Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299300 | XP_039685680.1 | 86.303 | 752 | 99 | 2 | 6 | 753 | 48 | 799 | 0.0 | 1336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299300 | sp|Q9SZL8|FRS5_ARATH | 27.116 | 638 | 395 | 13 | 4 | 639 | 68 | 637 | 4.52e-66 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0299300 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299300 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 592 | 772 | 1 | 184 | 1.00e-103 | 316 |
| Msa0299300 | MtrunA17_Chr2g0324011 | 30.503 | 636 | 364 | 13 | 10 | 639 | 8 | 571 | 1.52e-99 | 320 |
| Msa0299300 | MtrunA17_Chr3g0082121 | 30.825 | 691 | 390 | 17 | 15 | 701 | 49 | 655 | 4.97e-97 | 316 |
| Msa0299300 | MtrunA17_Chr1g0202341 | 29.449 | 635 | 367 | 17 | 8 | 636 | 50 | 609 | 7.23e-80 | 270 |
| Msa0299300 | MtrunA17_Chr8g0363841 | 28.571 | 630 | 375 | 14 | 14 | 639 | 22 | 580 | 6.11e-73 | 251 |
| Msa0299300 | MtrunA17_Chr1g0203721 | 25.758 | 726 | 431 | 18 | 14 | 713 | 68 | 711 | 7.45e-71 | 249 |
| Msa0299300 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 13 | 682 | 1 | 602 | 3.58e-68 | 239 |
| Msa0299300 | MtrunA17_Chr5g0448761 | 24.929 | 706 | 451 | 15 | 6 | 702 | 57 | 692 | 4.12e-66 | 234 |
| Msa0299300 | MtrunA17_Chr6g0458391 | 26.424 | 632 | 358 | 15 | 15 | 636 | 231 | 765 | 1.84e-63 | 226 |
| Msa0299300 | MtrunA17_Chr6g0477261 | 29.032 | 527 | 316 | 14 | 154 | 673 | 7 | 482 | 8.96e-63 | 223 |
| Msa0299300 | MtrunA17_Chr1g0164591 | 34.688 | 320 | 194 | 4 | 105 | 422 | 1 | 307 | 1.65e-61 | 210 |
| Msa0299300 | MtrunA17_Chr2g0287651 | 25.437 | 629 | 389 | 13 | 13 | 636 | 79 | 632 | 1.15e-58 | 214 |
| Msa0299300 | MtrunA17_Chr5g0441581 | 25.519 | 674 | 396 | 19 | 6 | 663 | 26 | 609 | 1.85e-56 | 205 |
| Msa0299300 | MtrunA17_Chr1g0207551 | 25.000 | 696 | 428 | 17 | 6 | 692 | 31 | 641 | 5.47e-54 | 200 |
| Msa0299300 | MtrunA17_Chr1g0196541 | 25.159 | 628 | 394 | 17 | 13 | 636 | 1 | 556 | 5.27e-53 | 196 |
| Msa0299300 | MtrunA17_Chr5g0440451 | 24.011 | 708 | 431 | 18 | 8 | 695 | 42 | 662 | 6.66e-53 | 198 |
| Msa0299300 | MtrunA17_Chr2g0329031 | 25.559 | 626 | 370 | 17 | 15 | 632 | 20 | 557 | 5.22e-52 | 193 |
| Msa0299300 | MtrunA17_Chr7g0258861 | 34.641 | 306 | 176 | 6 | 10 | 310 | 8 | 294 | 3.85e-51 | 181 |
| Msa0299300 | MtrunA17_Chr3g0080351 | 24.966 | 725 | 440 | 20 | 8 | 726 | 75 | 701 | 9.34e-51 | 191 |
| Msa0299300 | MtrunA17_Chr1g0198761 | 26.761 | 639 | 370 | 21 | 14 | 634 | 52 | 610 | 1.09e-50 | 190 |
| Msa0299300 | MtrunA17_Chr3g0118611 | 27.237 | 503 | 306 | 11 | 195 | 693 | 111 | 557 | 3.11e-50 | 189 |
| Msa0299300 | MtrunA17_Chr1g0203051 | 22.203 | 590 | 390 | 8 | 24 | 611 | 94 | 616 | 9.00e-47 | 177 |
| Msa0299300 | MtrunA17_Chr2g0287061 | 24.603 | 630 | 356 | 18 | 15 | 639 | 189 | 704 | 2.35e-46 | 177 |
| Msa0299300 | MtrunA17_Chr2g0290391 | 25.545 | 642 | 375 | 19 | 12 | 634 | 54 | 611 | 3.67e-46 | 176 |
| Msa0299300 | MtrunA17_Chr2g0276841 | 25.472 | 636 | 378 | 19 | 23 | 644 | 84 | 637 | 1.60e-45 | 174 |
| Msa0299300 | MtrunA17_Chr2g0291591 | 26.819 | 481 | 289 | 13 | 11 | 473 | 66 | 501 | 1.12e-43 | 166 |
| Msa0299300 | MtrunA17_Chr2g0291581 | 23.408 | 628 | 398 | 13 | 12 | 636 | 74 | 621 | 1.12e-43 | 168 |
| Msa0299300 | MtrunA17_Chr5g0448511 | 25.221 | 452 | 284 | 9 | 190 | 639 | 1 | 400 | 1.85e-42 | 162 |
| Msa0299300 | MtrunA17_Chr5g0431001 | 27.494 | 451 | 282 | 12 | 14 | 447 | 66 | 488 | 6.53e-41 | 157 |
| Msa0299300 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 162 | 234 | 1 | 73 | 8.43e-41 | 144 |
| Msa0299300 | MtrunA17_Chr1g0172971 | 83.529 | 85 | 14 | 0 | 6 | 90 | 33 | 117 | 1.72e-40 | 157 |
| Msa0299300 | MtrunA17_Chr2g0294841 | 26.217 | 637 | 366 | 24 | 15 | 631 | 51 | 603 | 2.53e-38 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299300 | AT4G38180.1 | 27.116 | 638 | 395 | 13 | 4 | 639 | 68 | 637 | 4.59e-67 | 237 |
| Msa0299300 | AT4G15090.1 | 24.628 | 739 | 460 | 17 | 24 | 757 | 66 | 712 | 8.95e-59 | 214 |
| Msa0299300 | AT4G15090.5 | 24.628 | 739 | 460 | 17 | 24 | 757 | 66 | 712 | 8.95e-59 | 214 |
| Msa0299300 | AT4G15090.3 | 24.628 | 739 | 460 | 17 | 24 | 757 | 66 | 712 | 8.95e-59 | 214 |
| Msa0299300 | AT4G15090.2 | 24.628 | 739 | 460 | 17 | 24 | 757 | 66 | 712 | 8.95e-59 | 214 |
| Msa0299300 | AT4G15090.4 | 24.628 | 739 | 460 | 17 | 24 | 757 | 66 | 712 | 8.95e-59 | 214 |
| Msa0299300 | AT2G27110.3 | 26.916 | 509 | 315 | 11 | 187 | 693 | 36 | 489 | 1.02e-51 | 192 |
| Msa0299300 | AT2G27110.2 | 25.628 | 597 | 370 | 15 | 101 | 693 | 108 | 634 | 2.25e-51 | 193 |
| Msa0299300 | AT2G27110.1 | 25.628 | 597 | 370 | 15 | 101 | 693 | 108 | 634 | 2.25e-51 | 193 |
| Msa0299300 | AT3G06250.2 | 24.803 | 633 | 353 | 16 | 8 | 635 | 189 | 703 | 3.18e-50 | 189 |
| Msa0299300 | AT3G06250.1 | 24.803 | 633 | 353 | 16 | 8 | 635 | 189 | 703 | 3.18e-50 | 189 |
| Msa0299300 | AT3G06250.3 | 24.803 | 633 | 353 | 16 | 8 | 635 | 189 | 703 | 3.18e-50 | 189 |
| Msa0299300 | AT1G76320.3 | 24.520 | 677 | 415 | 18 | 24 | 694 | 12 | 598 | 5.92e-49 | 184 |
| Msa0299300 | AT1G76320.1 | 24.556 | 676 | 414 | 18 | 24 | 693 | 12 | 597 | 1.63e-48 | 183 |
| Msa0299300 | AT1G76320.4 | 24.556 | 676 | 414 | 18 | 24 | 693 | 12 | 597 | 1.63e-48 | 183 |
| Msa0299300 | AT1G76320.2 | 24.556 | 676 | 414 | 18 | 24 | 693 | 12 | 597 | 1.89e-48 | 183 |
| Msa0299300 | AT3G22170.2 | 23.367 | 689 | 416 | 17 | 8 | 682 | 69 | 659 | 5.02e-47 | 180 |
| Msa0299300 | AT3G22170.1 | 23.367 | 689 | 416 | 17 | 8 | 682 | 69 | 659 | 5.02e-47 | 180 |
| Msa0299300 | AT5G18960.2 | 23.780 | 635 | 360 | 17 | 8 | 635 | 210 | 727 | 1.00e-43 | 170 |
| Msa0299300 | AT5G18960.1 | 23.780 | 635 | 360 | 17 | 8 | 635 | 210 | 727 | 1.00e-43 | 170 |
| Msa0299300 | AT4G38170.1 | 25.754 | 431 | 262 | 12 | 209 | 636 | 24 | 399 | 1.53e-43 | 166 |
| Msa0299300 | AT5G28530.1 | 24.413 | 639 | 386 | 19 | 14 | 634 | 60 | 619 | 3.13e-41 | 161 |
| Msa0299300 | AT1G10240.2 | 24.519 | 624 | 377 | 19 | 23 | 633 | 62 | 604 | 7.54e-41 | 160 |
| Msa0299300 | AT1G10240.1 | 24.519 | 624 | 377 | 19 | 23 | 633 | 62 | 604 | 7.54e-41 | 160 |
| Msa0299300 | AT5G28530.3 | 24.257 | 639 | 383 | 20 | 14 | 634 | 60 | 615 | 1.71e-40 | 159 |
| Msa0299300 | AT5G28530.2 | 24.257 | 639 | 383 | 20 | 14 | 634 | 60 | 615 | 1.71e-40 | 159 |
| Msa0299300 | AT1G80010.1 | 24.257 | 639 | 389 | 22 | 15 | 636 | 101 | 661 | 4.82e-39 | 155 |
| Msa0299300 | AT2G32250.5 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.39e-38 | 154 |
| Msa0299300 | AT2G32250.6 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.61e-38 | 154 |
| Msa0299300 | AT2G32250.1 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.61e-38 | 154 |
| Msa0299300 | AT2G32250.3 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.61e-38 | 154 |
| Msa0299300 | AT2G32250.7 | 23.380 | 710 | 406 | 20 | 15 | 717 | 3 | 581 | 1.79e-38 | 154 |
| Msa0299300 | AT2G32250.8 | 23.380 | 710 | 406 | 20 | 15 | 717 | 3 | 581 | 1.81e-38 | 154 |
| Msa0299300 | AT2G32250.2 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.83e-38 | 154 |
| Msa0299300 | AT2G32250.4 | 23.395 | 701 | 399 | 20 | 24 | 717 | 53 | 622 | 1.83e-38 | 154 |
| Msa0299300 | AT1G52520.1 | 23.529 | 629 | 393 | 20 | 15 | 636 | 91 | 638 | 1.39e-34 | 141 |
| Msa0299300 | AT4G19990.5 | 27.985 | 268 | 186 | 4 | 193 | 457 | 163 | 426 | 5.10e-26 | 114 |
| Msa0299300 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 565 | 695 | 495 | 615 | 8.64e-13 | 72.4 |
| Msa0299300 | AT4G19990.1 | 27.985 | 268 | 186 | 4 | 193 | 457 | 106 | 369 | 5.53e-26 | 114 |
| Msa0299300 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 565 | 695 | 438 | 558 | 8.48e-13 | 72.4 |
| Msa0299300 | AT4G19990.3 | 27.985 | 268 | 186 | 4 | 193 | 457 | 163 | 426 | 5.63e-26 | 114 |
| Msa0299300 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 565 | 695 | 495 | 615 | 8.57e-13 | 72.4 |
| Msa0299300 | AT4G19990.4 | 27.985 | 268 | 186 | 4 | 193 | 457 | 163 | 426 | 5.63e-26 | 114 |
| Msa0299300 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 565 | 695 | 495 | 615 | 8.57e-13 | 72.4 |
| Msa0299300 | AT4G19990.7 | 27.985 | 268 | 186 | 4 | 193 | 457 | 177 | 440 | 5.91e-26 | 114 |
| Msa0299300 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 565 | 695 | 509 | 629 | 9.45e-13 | 72.4 |
| Msa0299300 | AT4G19990.6 | 27.985 | 268 | 186 | 4 | 193 | 457 | 163 | 426 | 7.02e-26 | 114 |
| Msa0299300 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 565 | 695 | 495 | 615 | 7.88e-13 | 72.8 |
| Msa0299300 | AT4G19990.2 | 27.985 | 268 | 186 | 4 | 193 | 457 | 163 | 426 | 7.02e-26 | 114 |
| Msa0299300 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 565 | 695 | 495 | 615 | 7.88e-13 | 72.8 |
| Msa0299300 | AT5G28530.4 | 22.099 | 629 | 350 | 22 | 14 | 634 | 60 | 556 | 2.21e-22 | 102 |
| Msa0299300 | AT5G28530.5 | 21.940 | 629 | 347 | 23 | 14 | 634 | 60 | 552 | 1.31e-21 | 100 |
Find 121 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 2_3:+54010785 | Msa0299300:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 2_3:-54011920 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_3:+54011052 | Msa0299300:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 2_3:+54010504 | Msa0299300:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 2_3:+54009981 | Msa0299300:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 2_3:+54010537 | Msa0299300:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 2_3:-54010631 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 2_3:-54011914 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 2_3:+54011349 | Msa0299300:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 2_3:+54010826 | Msa0299300:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 2_3:+54011766 | Msa0299300:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 2_3:-54010649 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_3:-54010031 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 2_3:+54012163 | Msa0299300:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 2_3:-54011982 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 2_3:+54011085 | Msa0299300:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 2_3:-54011642 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 2_3:+54010926 | Msa0299300:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 2_3:+54012144 | Msa0299300:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 2_3:+54011758 | Msa0299300:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_3:+54010038 | Msa0299300:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 2_3:+54011094 | Msa0299300:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_3:+54010030 | Msa0299300:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 2_3:+54009119 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 2_3:+54010925 | Msa0299300:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 2_3:-54009501 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 2_3:+54011906 | Msa0299300:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_3:-54011896 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 2_3:+54009272 | Msa0299300:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 2_3:+54011474 | Msa0299300:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 2_3:-54011397 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 2_3:+54009343 | Msa0299300:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 2_3:+54011432 | Msa0299300:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 2_3:-54011398 | None:intergenic |
| GAGGAGTTTCTTATATCTAA+AGG | 0.432555 | 2_3:+54011791 | Msa0299300:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 2_3:+54009560 | Msa0299300:CDS |
| CAAGAAGTAAATGAAGTTCA+AGG | 0.439524 | 2_3:+54009678 | Msa0299300:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 2_3:+54009592 | Msa0299300:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 2_3:-54010642 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_3:+54009543 | Msa0299300:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 2_3:-54011575 | None:intergenic |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 2_3:+54009708 | Msa0299300:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 2_3:+54009198 | Msa0299300:five_prime_UTR |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 2_3:+54010716 | Msa0299300:CDS |
| CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 2_3:-54011228 | None:intergenic |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 2_3:-54009648 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 2_3:+54011475 | Msa0299300:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 2_3:+54010880 | Msa0299300:CDS |
| CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 2_3:-54011709 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 2_3:+54009392 | Msa0299300:CDS |
| TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 2_3:+54011242 | Msa0299300:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 2_3:+54009753 | Msa0299300:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 2_3:-54009537 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 2_3:+54009330 | Msa0299300:CDS |
| TCCTTTGTGATAAAGAATCA+TGG | 0.486378 | 2_3:+54009262 | Msa0299300:CDS |
| CTGTCTGTGAACTATCTGTT+GGG | 0.486691 | 2_3:+54011867 | Msa0299300:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 2_3:+54009821 | Msa0299300:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.489142 | 2_3:-54011029 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 2_3:+54009386 | Msa0299300:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 2_3:-54010517 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 2_3:+54010827 | Msa0299300:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 2_3:+54009834 | Msa0299300:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_3:+54011066 | Msa0299300:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 2_3:-54011146 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 2_3:+54009740 | Msa0299300:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 2_3:-54009926 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 2_3:+54010913 | Msa0299300:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 2_3:+54011411 | Msa0299300:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 2_3:-54009792 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 2_3:+54010931 | Msa0299300:CDS |
| CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 2_3:-54011223 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 2_3:-54011034 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 2_3:+54009596 | Msa0299300:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 2_3:+54011412 | Msa0299300:CDS |
| TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 2_3:+54011243 | Msa0299300:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 2_3:+54011972 | Msa0299300:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 2_3:+54011632 | Msa0299300:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 2_3:+54009437 | Msa0299300:CDS |
| GCTGTCTGTGAACTATCTGT+TGG | 0.540392 | 2_3:+54011866 | Msa0299300:CDS |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 2_3:+54009426 | Msa0299300:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_3:+54009438 | Msa0299300:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 2_3:-54009636 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 2_3:-54010662 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 2_3:+54009888 | Msa0299300:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 2_3:+54009222 | Msa0299300:five_prime_UTR |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 2_3:+54009756 | Msa0299300:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 2_3:+54011718 | Msa0299300:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 2_3:-54011147 | None:intergenic |
| TCCATGATTCTTTATCACAA+AGG | 0.585347 | 2_3:-54009263 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 2_3:+54011997 | Msa0299300:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 2_3:-54011168 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 2_3:+54009747 | Msa0299300:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 2_3:+54011759 | Msa0299300:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 2_3:+54010648 | Msa0299300:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 2_3:+54011754 | Msa0299300:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 2_3:+54012059 | Msa0299300:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 2_3:-54011834 | None:intergenic |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 2_3:-54011666 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 2_3:+54009741 | Msa0299300:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 2_3:+54009827 | Msa0299300:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 2_3:+54011721 | Msa0299300:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 2_3:+54011144 | Msa0299300:CDS |
| GAGGCTTTGACAATTTAAGC+GGG | 0.608380 | 2_3:+54012016 | Msa0299300:exon |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 2_3:+54011327 | Msa0299300:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 2_3:+54009830 | Msa0299300:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 2_3:+54009187 | Msa0299300:five_prime_UTR |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 2_3:-54010882 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 2_3:+54011328 | Msa0299300:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 2_3:-54009486 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 2_3:+54009761 | Msa0299300:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 2_3:-54011396 | None:intergenic |
| TGAGGCTTTGACAATTTAAG+CGG | 0.631125 | 2_3:+54012015 | Msa0299300:exon |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 2_3:+54010717 | Msa0299300:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_3:+54011067 | Msa0299300:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 2_3:+54009595 | Msa0299300:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 2_3:-54011617 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 2_3:-54011188 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 2_3:+54011743 | Msa0299300:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 2_3:-54011493 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 2_3:+54010644 | Msa0299300:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 2_3:+54011476 | Msa0299300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr2_3:54012046-54012065 | Msa0299300:three_prime_UTR | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr2_3:54009330-54009349 | Msa0299300:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr2_3:54009386-54009405 | Msa0299300:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr2_3:54009592-54009611 | Msa0299300:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr2_3:54010185-54010204 | Msa0299300:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr2_3:54010213-54010232 | Msa0299300:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr2_3:54010855-54010874 | Msa0299300:CDS | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr2_3:54012144-54012163 | Msa0299300:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr2_3:54009222-54009241 | Msa0299300:five_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr2_3:54009382-54009401 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr2_3:54009392-54009411 | Msa0299300:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr2_3:54009595-54009614 | Msa0299300:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr2_3:54009596-54009615 | Msa0299300:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr2_3:54009708-54009727 | Msa0299300:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr2_3:54009943-54009962 | Msa0299300:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr2_3:54009944-54009963 | Msa0299300:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr2_3:54010030-54010049 | Msa0299300:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr2_3:54010056-54010075 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr2_3:54010103-54010122 | Msa0299300:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr2_3:54010205-54010224 | Msa0299300:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr2_3:54010475-54010494 | Msa0299300:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr2_3:54010693-54010712 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr2_3:54010785-54010804 | Msa0299300:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr2_3:54010859-54010878 | Msa0299300:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr2_3:54011052-54011071 | Msa0299300:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr2_3:54011191-54011210 | None:intergenic | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | - | chr2_3:54011226-54011245 | None:intergenic | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | + | chr2_3:54011226-54011245 | Msa0299300:CDS | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | + | chr2_3:54011286-54011305 | Msa0299300:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr2_3:54011327-54011346 | Msa0299300:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr2_3:54011328-54011347 | Msa0299300:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | + | chr2_3:54011945-54011964 | Msa0299300:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | + | chr2_3:54011946-54011965 | Msa0299300:CDS | 25.0% |
| TCCTTTGTGATAAAGAATCA+TGG | + | chr2_3:54009262-54009281 | Msa0299300:CDS | 30.0% | |
| TCCATGATTCTTTATCACAA+AGG | - | chr2_3:54009266-54009285 | None:intergenic | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr2_3:54009272-54009291 | Msa0299300:CDS | 30.0% | |
| TGTTATGCTTGTAACAAAGA+AGG | + | chr2_3:54009426-54009445 | Msa0299300:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr2_3:54009437-54009456 | Msa0299300:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr2_3:54009438-54009457 | Msa0299300:CDS | 30.0% | |
| GTCTGCTTAATCCTAAAAAT+AGG | + | chr2_3:54009463-54009482 | Msa0299300:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr2_3:54009527-54009546 | Msa0299300:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr2_3:54009560-54009579 | Msa0299300:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr2_3:54009639-54009658 | None:intergenic | 30.0% |
| CAAGAAGTAAATGAAGTTCA+AGG | + | chr2_3:54009678-54009697 | Msa0299300:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr2_3:54009741-54009760 | Msa0299300:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr2_3:54009785-54009804 | Msa0299300:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr2_3:54009795-54009814 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr2_3:54009909-54009928 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr2_3:54009981-54010000 | Msa0299300:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr2_3:54010034-54010053 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr2_3:54010038-54010057 | Msa0299300:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr2_3:54010117-54010136 | Msa0299300:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr2_3:54010142-54010161 | Msa0299300:intron | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | - | chr2_3:54010243-54010262 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr2_3:54010276-54010295 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr2_3:54010434-54010453 | Msa0299300:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr2_3:54010520-54010539 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr2_3:54010634-54010653 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr2_3:54010684-54010703 | Msa0299300:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr2_3:54010696-54010715 | Msa0299300:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr2_3:54010741-54010760 | Msa0299300:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr2_3:54010826-54010845 | Msa0299300:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr2_3:54010827-54010846 | Msa0299300:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr2_3:54011037-54011056 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr2_3:54011171-54011190 | None:intergenic | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | - | chr2_3:54011231-54011250 | None:intergenic | 30.0% | |
| !! | CTTCAAATACTATTTTGAGG+AGG | + | chr2_3:54011229-54011248 | Msa0299300:CDS | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | + | chr2_3:54011349-54011368 | Msa0299300:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr2_3:54011399-54011418 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr2_3:54011400-54011419 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr2_3:54011411-54011430 | Msa0299300:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr2_3:54011412-54011431 | Msa0299300:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr2_3:54011508-54011527 | Msa0299300:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | + | chr2_3:54011518-54011537 | Msa0299300:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr2_3:54011576-54011595 | Msa0299300:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr2_3:54011743-54011762 | Msa0299300:CDS | 30.0% |
| GAGGAGTTTCTTATATCTAA+AGG | + | chr2_3:54011791-54011810 | Msa0299300:CDS | 30.0% | |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr2_3:54011899-54011918 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr2_3:54011906-54011925 | Msa0299300:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr2_3:54011917-54011936 | None:intergenic | 30.0% | |
| ATAAGTTAGGAAAGATGATG+AGG | + | chr2_3:54012059-54012078 | Msa0299300:three_prime_UTR | 30.0% | |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr2_3:54009159-54009178 | Msa0299300:five_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr2_3:54009187-54009206 | Msa0299300:five_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr2_3:54009343-54009362 | Msa0299300:CDS | 35.0% | |
| !! | TCACATGTTGGCCTATTTTT+AGG | - | chr2_3:54009477-54009496 | None:intergenic | 35.0% |
| TTCTCATACTCAACAAGAAC+TGG | - | chr2_3:54009504-54009523 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr2_3:54009521-54009540 | Msa0299300:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr2_3:54009526-54009545 | Msa0299300:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr2_3:54009740-54009759 | Msa0299300:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr2_3:54010537-54010556 | Msa0299300:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr2_3:54010580-54010599 | Msa0299300:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr2_3:54010709-54010728 | Msa0299300:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr2_3:54010913-54010932 | Msa0299300:CDS | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr2_3:54010926-54010945 | Msa0299300:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr2_3:54010996-54011015 | Msa0299300:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr2_3:54011066-54011085 | Msa0299300:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr2_3:54011067-54011086 | Msa0299300:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr2_3:54011401-54011420 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | + | chr2_3:54011521-54011540 | Msa0299300:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr2_3:54011578-54011597 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr2_3:54011579-54011598 | Msa0299300:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | + | chr2_3:54011632-54011651 | Msa0299300:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr2_3:54011845-54011864 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr2_3:54011972-54011991 | Msa0299300:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr2_3:54011997-54012016 | Msa0299300:CDS | 35.0% | |
| ! | TGAGGCTTTGACAATTTAAG+CGG | + | chr2_3:54012015-54012034 | Msa0299300:exon | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr2_3:54009198-54009217 | Msa0299300:five_prime_UTR | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr2_3:54009747-54009766 | Msa0299300:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | + | chr2_3:54009821-54009840 | Msa0299300:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr2_3:54009951-54009970 | Msa0299300:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr2_3:54010123-54010142 | Msa0299300:intron | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr2_3:54010370-54010389 | Msa0299300:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr2_3:54010374-54010393 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr2_3:54010504-54010523 | Msa0299300:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr2_3:54010645-54010664 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr2_3:54010644-54010663 | Msa0299300:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr2_3:54010885-54010904 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr2_3:54010925-54010944 | Msa0299300:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr2_3:54011032-54011051 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr2_3:54011085-54011104 | Msa0299300:CDS | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr2_3:54011094-54011113 | Msa0299300:CDS | 40.0% |
| TTTGAGGAGGACACAACAAA+AGG | + | chr2_3:54011242-54011261 | Msa0299300:CDS | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | + | chr2_3:54011243-54011262 | Msa0299300:CDS | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | + | chr2_3:54011365-54011384 | Msa0299300:CDS | 40.0% |
| ! | TTGAAGGAAACTTTTCCCCA+AGG | + | chr2_3:54011381-54011400 | Msa0299300:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr2_3:54011474-54011493 | Msa0299300:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr2_3:54011475-54011494 | Msa0299300:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr2_3:54011620-54011639 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr2_3:54011645-54011664 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr2_3:54011669-54011688 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr2_3:54011754-54011773 | Msa0299300:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr2_3:54011837-54011856 | None:intergenic | 40.0% |
| CTGTCTGTGAACTATCTGTT+GGG | + | chr2_3:54011867-54011886 | Msa0299300:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr2_3:54011923-54011942 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr2_3:54011985-54012004 | None:intergenic | 40.0% | |
| ! | GAGGCTTTGACAATTTAAGC+GGG | + | chr2_3:54012016-54012035 | Msa0299300:exon | 40.0% |
| AGAACTGGACTGTCACATGT+TGG | - | chr2_3:54009489-54009508 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr2_3:54009531-54009550 | Msa0299300:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr2_3:54009540-54009559 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr2_3:54009543-54009562 | Msa0299300:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr2_3:54009888-54009907 | Msa0299300:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr2_3:54009929-54009948 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr2_3:54010256-54010275 | Msa0299300:intron | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | + | chr2_3:54010880-54010899 | Msa0299300:CDS | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr2_3:54010931-54010950 | Msa0299300:CDS | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr2_3:54010948-54010967 | Msa0299300:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr2_3:54011144-54011163 | Msa0299300:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr2_3:54011476-54011495 | Msa0299300:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr2_3:54011496-54011515 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr2_3:54011766-54011785 | Msa0299300:CDS | 45.0% | |
| GCTGTCTGTGAACTATCTGT+TGG | + | chr2_3:54011866-54011885 | Msa0299300:CDS | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | - | chr2_3:54009651-54009670 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr2_3:54009753-54009772 | Msa0299300:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | + | chr2_3:54009827-54009846 | Msa0299300:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | + | chr2_3:54009830-54009849 | Msa0299300:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr2_3:54010648-54010667 | Msa0299300:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr2_3:54010652-54010671 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr2_3:54010716-54010735 | Msa0299300:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr2_3:54010717-54010736 | Msa0299300:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr2_3:54011149-54011168 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr2_3:54011432-54011451 | Msa0299300:CDS | 50.0% | |
| CGCAAACACGTGTAGAAAGC+TGG | - | chr2_3:54011712-54011731 | None:intergenic | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr2_3:54011718-54011737 | Msa0299300:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr2_3:54011759-54011778 | Msa0299300:CDS | 50.0% | |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr2_3:54009756-54009775 | Msa0299300:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr2_3:54009834-54009853 | Msa0299300:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr2_3:54010665-54010684 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr2_3:54011150-54011169 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr2_3:54011758-54011777 | Msa0299300:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr2_3:54011772-54011791 | Msa0299300:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr2_3:54009761-54009780 | Msa0299300:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr2_3:54011721-54011740 | Msa0299300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54009133 | 54012185 | 54009133 | ID=Msa0299300;Name=Msa0299300 |
| chr2_3 | mRNA | 54009133 | 54012185 | 54009133 | ID=Msa0299300-mRNA-1;Parent=Msa0299300;Name=Msa0299300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|2|152|774 |
| chr2_3 | exon | 54009133 | 54010059 | 54009133 | ID=Msa0299300-mRNA-1:exon:17260;Parent=Msa0299300-mRNA-1 |
| chr2_3 | exon | 54010514 | 54012185 | 54010514 | ID=Msa0299300-mRNA-1:exon:17261;Parent=Msa0299300-mRNA-1 |
| chr2_3 | five_prime_UTR | 54009133 | 54009254 | 54009133 | ID=Msa0299300-mRNA-1:five_prime_utr;Parent=Msa0299300-mRNA-1 |
| chr2_3 | CDS | 54009255 | 54010059 | 54009255 | ID=Msa0299300-mRNA-1:cds;Parent=Msa0299300-mRNA-1 |
| chr2_3 | CDS | 54010514 | 54012033 | 54010514 | ID=Msa0299300-mRNA-1:cds;Parent=Msa0299300-mRNA-1 |
| chr2_3 | three_prime_UTR | 54012034 | 54012185 | 54012034 | ID=Msa0299300-mRNA-1:three_prime_utr;Parent=Msa0299300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
