Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299460 | XP_013465039.1 | 93.220 | 236 | 9 | 1 | 1 | 229 | 1 | 236 | 8.92e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299460 | sp|Q8GZA8|ULT1_ARATH | 67.234 | 235 | 70 | 1 | 2 | 229 | 3 | 237 | 1.97e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299460 | A0A072VAL1 | 93.220 | 236 | 9 | 1 | 1 | 229 | 1 | 236 | 4.26e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0299460 | TF | ULT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299460 | MtrunA17_Chr2g0323881 | 93.220 | 236 | 9 | 1 | 1 | 229 | 1 | 236 | 8.20e-164 | 451 |
| Msa0299460 | MtrunA17_Chr4g0022491 | 75.000 | 236 | 52 | 1 | 1 | 229 | 4 | 239 | 7.36e-131 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299460 | AT4G28190.1 | 67.234 | 235 | 70 | 1 | 2 | 229 | 3 | 237 | 2.01e-116 | 332 |
| Msa0299460 | AT4G28190.2 | 59.398 | 266 | 70 | 2 | 2 | 229 | 3 | 268 | 1.32e-109 | 316 |
| Msa0299460 | AT2G20825.1 | 64.378 | 233 | 69 | 3 | 5 | 229 | 1 | 227 | 1.27e-106 | 307 |
Find 50 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTTAGCTGATCCTAAT+TGG | 0.234644 | 2_3:+54393459 | Msa0299460:CDS |
| GGAAATGGAAGAACAATATC+TGG | 0.261820 | 2_3:+54393234 | Msa0299460:CDS |
| ATTGATGGAGTGAAGAAAAT+TGG | 0.281708 | 2_3:+54392232 | Msa0299460:CDS |
| AGATTGGAACATTTCCAATT+AGG | 0.284354 | 2_3:-54393473 | None:intergenic |
| GTGGCACGCCTGCCCATTAT+TGG | 0.300408 | 2_3:-54393351 | None:intergenic |
| GGTTCCCACAAATCCAATAA+TGG | 0.313909 | 2_3:+54393338 | Msa0299460:CDS |
| GCTGCGTTTGAGAAACATTC+TGG | 0.316093 | 2_3:+54393197 | Msa0299460:CDS |
| ACAAGAAGTGCAACCTTTGC+AGG | 0.345352 | 2_3:-54394513 | None:intergenic |
| TGCACTTCTTGTGTGTGCTT+TGG | 0.357522 | 2_3:+54394524 | Msa0299460:CDS |
| TTGCACTTGCCAGACTTGTA+TGG | 0.394373 | 2_3:+54394571 | Msa0299460:CDS |
| CCTGCCCATTATTGGATTTG+TGG | 0.412539 | 2_3:-54393343 | None:intergenic |
| GAAGAGAAACAGCTAGGAAA+TGG | 0.415093 | 2_3:+54393219 | Msa0299460:CDS |
| GTGATGCTGTTGGAAGGCTT+AGG | 0.416932 | 2_3:+54392299 | Msa0299460:CDS |
| TGTTCAGTGATGAAGAGTTA+AGG | 0.424542 | 2_3:+54392206 | Msa0299460:CDS |
| GTTCCCACAAATCCAATAAT+GGG | 0.426469 | 2_3:+54393339 | Msa0299460:CDS |
| CTGCCCATTATTGGATTTGT+GGG | 0.429490 | 2_3:-54393342 | None:intergenic |
| ATCACTTGTGAATGCATCCC+TGG | 0.433805 | 2_3:+54392346 | Msa0299460:CDS |
| TGATGCTGTTGGAAGGCTTA+GGG | 0.435789 | 2_3:+54392300 | Msa0299460:CDS |
| GACATTCCTCTTTAGTTCTC+AGG | 0.443703 | 2_3:-54393424 | None:intergenic |
| TTTGATAGAAAATGTCAAAC+GGG | 0.447762 | 2_3:+54392158 | None:intergenic |
| GATTGAACATACTTGTCATA+TGG | 0.454651 | 2_3:-54393497 | None:intergenic |
| GTTCAGTGATGAAGAGTTAA+GGG | 0.457322 | 2_3:+54392207 | Msa0299460:CDS |
| GAAGAGTTAAGGGATATTGA+TGG | 0.458252 | 2_3:+54392217 | Msa0299460:CDS |
| ATACTTGTCATATGGAAGAT+TGG | 0.462268 | 2_3:-54393489 | None:intergenic |
| CATGATATGAACTCAAGCTT+TGG | 0.464804 | 2_3:-54394609 | None:intergenic |
| TTGTAAAGTCCATACAAGTC+TGG | 0.482167 | 2_3:-54394580 | None:intergenic |
| ATTGGATTTGTGGGAACCAT+TGG | 0.501377 | 2_3:-54393333 | None:intergenic |
| AGACTTGTATGGACTTTACA+AGG | 0.505964 | 2_3:+54394582 | Msa0299460:CDS |
| GAATGTTTCTCAAACGCAGC+AGG | 0.520755 | 2_3:-54393194 | None:intergenic |
| AAAGGACATTCTTCACAGCC+AGG | 0.523560 | 2_3:-54392364 | None:intergenic |
| AACGGGTTAGAGAGAGAAAG+TGG | 0.529218 | 2_3:+54392175 | Msa0299460:CDS |
| CATAGATACGGTGATGCTGT+TGG | 0.535605 | 2_3:+54392289 | Msa0299460:CDS |
| CCACAAATCCAATAATGGGC+AGG | 0.543451 | 2_3:+54393343 | Msa0299460:CDS |
| TGTGATGATGAAGAAGAAAG+AGG | 0.552017 | 2_3:+54394452 | Msa0299460:CDS |
| ACTCATTCTGCAGCCTGCAA+AGG | 0.562795 | 2_3:+54394500 | Msa0299460:CDS |
| GAAATGGAAGAACAATATCT+GGG | 0.577525 | 2_3:+54393235 | Msa0299460:CDS |
| GTTCCGCCTGAGAACTAAAG+AGG | 0.578750 | 2_3:+54393418 | Msa0299460:CDS |
| GATACGGTGATGCTGTTGGA+AGG | 0.589849 | 2_3:+54392293 | Msa0299460:CDS |
| TAACTCTTCATCACTGAACA+TGG | 0.592135 | 2_3:-54392203 | None:intergenic |
| TAGGATCAGCTAAAGCATCA+TGG | 0.594494 | 2_3:-54393454 | None:intergenic |
| ATTCTGGAAGAGAAACAGCT+AGG | 0.616300 | 2_3:+54393213 | Msa0299460:CDS |
| GGTTGTACTAGTCATAGATA+CGG | 0.623720 | 2_3:+54392277 | Msa0299460:CDS |
| TACAGCAGATAAACTCGTCA+CGG | 0.635905 | 2_3:-54393373 | None:intergenic |
| AAGGACATTCTTCACAGCCA+GGG | 0.637942 | 2_3:-54392363 | None:intergenic |
| CTAGATGTAACAAAGAGCGC+AGG | 0.644243 | 2_3:+54393396 | Msa0299460:CDS |
| ATTCCTCTTTAGTTCTCAGG+CGG | 0.652096 | 2_3:-54393421 | None:intergenic |
| GGCAGTCGCAGAGTTTACAG+AGG | 0.678401 | 2_3:+54394473 | Msa0299460:CDS |
| GAATGTATTGAAGTTATGTG+TGG | 0.706126 | 2_3:+54392256 | Msa0299460:CDS |
| ACGGGTTAGAGAGAGAAAGT+GGG | 0.717955 | 2_3:+54392176 | Msa0299460:CDS |
| AGCAGATAAACTCGTCACGG+TGG | 0.722161 | 2_3:-54393370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTCTTATTATTAAAAA+TGG | + | chr2_3:54392522-54392541 | Msa0299460:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | + | chr2_3:54392523-54392542 | Msa0299460:intron | 10.0% |
| !! | TAAAAATCATAATGAAAATT+AGG | - | chr2_3:54393155-54393174 | None:intergenic | 10.0% |
| !! | TATTCTCTTATTATTAAAAA+TGG | + | chr2_3:54392522-54392541 | Msa0299460:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | + | chr2_3:54392523-54392542 | Msa0299460:intron | 10.0% |
| !! | TAAAAATCATAATGAAAATT+AGG | - | chr2_3:54393155-54393174 | None:intergenic | 10.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | + | chr2_3:54392524-54392543 | Msa0299460:intron | 15.0% |
| !! | TCTATAAATTTATGTATTGA+AGG | + | chr2_3:54393611-54393630 | Msa0299460:intron | 15.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | + | chr2_3:54392524-54392543 | Msa0299460:intron | 15.0% |
| !! | TCTATAAATTTATGTATTGA+AGG | + | chr2_3:54393611-54393630 | Msa0299460:intron | 15.0% |
| !! | GAGATATAATAGATAGAAAA+AGG | - | chr2_3:54392385-54392404 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTCATTTGATAT+TGG | + | chr2_3:54392606-54392625 | Msa0299460:intron | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | - | chr2_3:54393066-54393085 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGATAA+GGG | - | chr2_3:54393567-54393586 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGATA+AGG | - | chr2_3:54393568-54393587 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | - | chr2_3:54393596-54393615 | None:intergenic | 20.0% |
| !! | TAATACTAGAACTAGAATAA+TGG | - | chr2_3:54393693-54393712 | None:intergenic | 20.0% |
| !! | TTTAAATCAGTATGCATAAT+AGG | - | chr2_3:54394063-54394082 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | - | chr2_3:54394249-54394268 | None:intergenic | 20.0% |
| !! | GAGATATAATAGATAGAAAA+AGG | - | chr2_3:54392385-54392404 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTCATTTGATAT+TGG | + | chr2_3:54392606-54392625 | Msa0299460:intron | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | - | chr2_3:54393066-54393085 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGATAA+GGG | - | chr2_3:54393567-54393586 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGATA+AGG | - | chr2_3:54393568-54393587 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | - | chr2_3:54393596-54393615 | None:intergenic | 20.0% |
| !! | TAATACTAGAACTAGAATAA+TGG | - | chr2_3:54393693-54393712 | None:intergenic | 20.0% |
| !! | TTTAAATCAGTATGCATAAT+AGG | - | chr2_3:54394063-54394082 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | - | chr2_3:54394249-54394268 | None:intergenic | 20.0% |
| ! | ATAAAACGCCAAAATAAACA+CGG | - | chr2_3:54392503-54392522 | None:intergenic | 25.0% |
| ! | ATTTGTCAAAGTGAAAACTT+TGG | + | chr2_3:54392739-54392758 | Msa0299460:intron | 25.0% |
| !! | AAAGTCAATGAAATCTGTTT+TGG | + | chr2_3:54392857-54392876 | Msa0299460:intron | 25.0% |
| ! | GCTTAAAACAGATATAAACA+TGG | - | chr2_3:54392978-54392997 | None:intergenic | 25.0% |
| ! | GAAACAAGTTATAATTCACT+TGG | - | chr2_3:54393044-54393063 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | - | chr2_3:54393083-54393102 | None:intergenic | 25.0% |
| !! | GTAGAACTGTTTTATACAAT+GGG | - | chr2_3:54393283-54393302 | None:intergenic | 25.0% |
| !! | AGTAGAACTGTTTTATACAA+TGG | - | chr2_3:54393284-54393303 | None:intergenic | 25.0% |
| ! | AATTTATGTATTGAAGGCAA+TGG | + | chr2_3:54393617-54393636 | Msa0299460:intron | 25.0% |
| !!! | TTATGTTGTTTTGCTATGTA+TGG | + | chr2_3:54393999-54394018 | Msa0299460:intron | 25.0% |
| !!! | CATACTGATTTAAATATGCA+TGG | + | chr2_3:54394069-54394088 | Msa0299460:intron | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | + | chr2_3:54394232-54394251 | Msa0299460:intron | 25.0% |
| !!! | GCTTTTCAACTTTTTTACAA+TGG | + | chr2_3:54394361-54394380 | Msa0299460:intron | 25.0% |
| ! | ATAAAACGCCAAAATAAACA+CGG | - | chr2_3:54392503-54392522 | None:intergenic | 25.0% |
| ! | ATTTGTCAAAGTGAAAACTT+TGG | + | chr2_3:54392739-54392758 | Msa0299460:intron | 25.0% |
| !! | AAAGTCAATGAAATCTGTTT+TGG | + | chr2_3:54392857-54392876 | Msa0299460:intron | 25.0% |
| ! | GCTTAAAACAGATATAAACA+TGG | - | chr2_3:54392978-54392997 | None:intergenic | 25.0% |
| ! | GAAACAAGTTATAATTCACT+TGG | - | chr2_3:54393044-54393063 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | - | chr2_3:54393083-54393102 | None:intergenic | 25.0% |
| !! | GTAGAACTGTTTTATACAAT+GGG | - | chr2_3:54393283-54393302 | None:intergenic | 25.0% |
| !! | AGTAGAACTGTTTTATACAA+TGG | - | chr2_3:54393284-54393303 | None:intergenic | 25.0% |
| ! | AATTTATGTATTGAAGGCAA+TGG | + | chr2_3:54393617-54393636 | Msa0299460:intron | 25.0% |
| !!! | TTATGTTGTTTTGCTATGTA+TGG | + | chr2_3:54393999-54394018 | Msa0299460:intron | 25.0% |
| !!! | CATACTGATTTAAATATGCA+TGG | + | chr2_3:54394069-54394088 | Msa0299460:intron | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | + | chr2_3:54394232-54394251 | Msa0299460:intron | 25.0% |
| !!! | GCTTTTCAACTTTTTTACAA+TGG | + | chr2_3:54394361-54394380 | Msa0299460:intron | 25.0% |
| ATTGATGGAGTGAAGAAAAT+TGG | + | chr2_3:54392232-54392251 | Msa0299460:CDS | 30.0% | |
| GAATGTATTGAAGTTATGTG+TGG | + | chr2_3:54392256-54392275 | Msa0299460:CDS | 30.0% | |
| ATTACATGATTCTAGACAAG+TGG | + | chr2_3:54392764-54392783 | Msa0299460:intron | 30.0% | |
| !!! | TAGCATGTTATGTTGACTTT+TGG | + | chr2_3:54392827-54392846 | Msa0299460:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+CGG | + | chr2_3:54392871-54392890 | Msa0299460:intron | 30.0% |
| TAAAGCAATTCTGTAATCTG+TGG | - | chr2_3:54392924-54392943 | None:intergenic | 30.0% | |
| TTGCTTTAATTCTTACGTTG+TGG | + | chr2_3:54392936-54392955 | Msa0299460:intron | 30.0% | |
| GAAATGGAAGAACAATATCT+GGG | + | chr2_3:54393235-54393254 | Msa0299460:CDS | 30.0% | |
| CAAGCATTAAAAACAACCAA+TGG | + | chr2_3:54393317-54393336 | Msa0299460:CDS | 30.0% | |
| AGATTGGAACATTTCCAATT+AGG | - | chr2_3:54393476-54393495 | None:intergenic | 30.0% | |
| ATACTTGTCATATGGAAGAT+TGG | - | chr2_3:54393492-54393511 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | - | chr2_3:54393500-54393519 | None:intergenic | 30.0% | |
| ! | GCCTTTAAAAAAGTAGTAGT+CGG | + | chr2_3:54393956-54393975 | Msa0299460:intron | 30.0% |
| !!! | ACCGACTACTACTTTTTTAA+AGG | - | chr2_3:54393960-54393979 | None:intergenic | 30.0% |
| CAAATTCGGACAAACATAAA+AGG | - | chr2_3:54394134-54394153 | None:intergenic | 30.0% | |
| GTGAGACATCTAAACAAATT+CGG | - | chr2_3:54394148-54394167 | None:intergenic | 30.0% | |
| TCTGTATAGAAGATTCAAGT+TGG | + | chr2_3:54394275-54394294 | Msa0299460:intron | 30.0% | |
| ! | CTGTATAGAAGATTCAAGTT+GGG | + | chr2_3:54394276-54394295 | Msa0299460:intron | 30.0% |
| !! | TGTATAGAAGATTCAAGTTG+GGG | + | chr2_3:54394277-54394296 | Msa0299460:intron | 30.0% |
| ATTGATGGAGTGAAGAAAAT+TGG | + | chr2_3:54392232-54392251 | Msa0299460:CDS | 30.0% | |
| GAATGTATTGAAGTTATGTG+TGG | + | chr2_3:54392256-54392275 | Msa0299460:CDS | 30.0% | |
| ATTACATGATTCTAGACAAG+TGG | + | chr2_3:54392764-54392783 | Msa0299460:intron | 30.0% | |
| !!! | TAGCATGTTATGTTGACTTT+TGG | + | chr2_3:54392827-54392846 | Msa0299460:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+CGG | + | chr2_3:54392871-54392890 | Msa0299460:intron | 30.0% |
| TAAAGCAATTCTGTAATCTG+TGG | - | chr2_3:54392924-54392943 | None:intergenic | 30.0% | |
| TTGCTTTAATTCTTACGTTG+TGG | + | chr2_3:54392936-54392955 | Msa0299460:intron | 30.0% | |
| GAAATGGAAGAACAATATCT+GGG | + | chr2_3:54393235-54393254 | Msa0299460:CDS | 30.0% | |
| CAAGCATTAAAAACAACCAA+TGG | + | chr2_3:54393317-54393336 | Msa0299460:CDS | 30.0% | |
| AGATTGGAACATTTCCAATT+AGG | - | chr2_3:54393476-54393495 | None:intergenic | 30.0% | |
| ATACTTGTCATATGGAAGAT+TGG | - | chr2_3:54393492-54393511 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | - | chr2_3:54393500-54393519 | None:intergenic | 30.0% | |
| ! | GCCTTTAAAAAAGTAGTAGT+CGG | + | chr2_3:54393956-54393975 | Msa0299460:intron | 30.0% |
| !!! | ACCGACTACTACTTTTTTAA+AGG | - | chr2_3:54393960-54393979 | None:intergenic | 30.0% |
| CAAATTCGGACAAACATAAA+AGG | - | chr2_3:54394134-54394153 | None:intergenic | 30.0% | |
| GTGAGACATCTAAACAAATT+CGG | - | chr2_3:54394148-54394167 | None:intergenic | 30.0% | |
| TCTGTATAGAAGATTCAAGT+TGG | + | chr2_3:54394275-54394294 | Msa0299460:intron | 30.0% | |
| ! | CTGTATAGAAGATTCAAGTT+GGG | + | chr2_3:54394276-54394295 | Msa0299460:intron | 30.0% |
| !! | TGTATAGAAGATTCAAGTTG+GGG | + | chr2_3:54394277-54394296 | Msa0299460:intron | 30.0% |
| TAACTCTTCATCACTGAACA+TGG | - | chr2_3:54392206-54392225 | None:intergenic | 35.0% | |
| TGTTCAGTGATGAAGAGTTA+AGG | + | chr2_3:54392206-54392225 | Msa0299460:CDS | 35.0% | |
| GTTCAGTGATGAAGAGTTAA+GGG | + | chr2_3:54392207-54392226 | Msa0299460:CDS | 35.0% | |
| GAAGAGTTAAGGGATATTGA+TGG | + | chr2_3:54392217-54392236 | Msa0299460:CDS | 35.0% | |
| GGTTGTACTAGTCATAGATA+CGG | + | chr2_3:54392277-54392296 | Msa0299460:CDS | 35.0% | |
| ! | AGGCTTAGGGTTTTTGTTAA+TGG | + | chr2_3:54392313-54392332 | Msa0299460:CDS | 35.0% |
| !!! | TGGATGGTTGTTTTAATGTG+TGG | + | chr2_3:54392647-54392666 | Msa0299460:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | + | chr2_3:54392690-54392709 | Msa0299460:intron | 35.0% | |
| TTATGTACGGTACTACTCTA+AGG | + | chr2_3:54392884-54392903 | Msa0299460:intron | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | + | chr2_3:54393234-54393253 | Msa0299460:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+TGG | + | chr2_3:54393248-54393267 | Msa0299460:intron | 35.0% | |
| GTTCCCACAAATCCAATAAT+GGG | + | chr2_3:54393339-54393358 | Msa0299460:CDS | 35.0% | |
| ATGCTTTAGCTGATCCTAAT+TGG | + | chr2_3:54393459-54393478 | Msa0299460:CDS | 35.0% | |
| AAGTATGTTCAATCTGCTGT+AGG | + | chr2_3:54393506-54393525 | Msa0299460:intron | 35.0% | |
| ATTATCACAAGATAAGGGCT+AGG | - | chr2_3:54393562-54393581 | None:intergenic | 35.0% | |
| ATGTGGTCGAAGATATAACT+TGG | - | chr2_3:54393656-54393675 | None:intergenic | 35.0% | |
| TTGTCAAGACACTAAACTCT+AGG | - | chr2_3:54393850-54393869 | None:intergenic | 35.0% | |
| TGTCTTGACAATGCAACTTT+GGG | + | chr2_3:54393859-54393878 | Msa0299460:intron | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+CGG | + | chr2_3:54393915-54393934 | Msa0299460:intron | 35.0% |
| ! | TTTAAAGGCATGACCAAGAT+TGG | - | chr2_3:54393945-54393964 | None:intergenic | 35.0% |
| GTATCGTGAAAGAACTATCA+CGG | + | chr2_3:54394100-54394119 | Msa0299460:intron | 35.0% | |
| TTACGTAGTTATTGCTGTAG+CGG | + | chr2_3:54394169-54394188 | Msa0299460:intron | 35.0% | |
| ! | TGTGATGATGAAGAAGAAAG+AGG | + | chr2_3:54394452-54394471 | Msa0299460:CDS | 35.0% |
| TTGTAAAGTCCATACAAGTC+TGG | - | chr2_3:54394583-54394602 | None:intergenic | 35.0% | |
| AGACTTGTATGGACTTTACA+AGG | + | chr2_3:54394582-54394601 | Msa0299460:CDS | 35.0% | |
| TAACTCTTCATCACTGAACA+TGG | - | chr2_3:54392206-54392225 | None:intergenic | 35.0% | |
| TGTTCAGTGATGAAGAGTTA+AGG | + | chr2_3:54392206-54392225 | Msa0299460:CDS | 35.0% | |
| GTTCAGTGATGAAGAGTTAA+GGG | + | chr2_3:54392207-54392226 | Msa0299460:CDS | 35.0% | |
| GAAGAGTTAAGGGATATTGA+TGG | + | chr2_3:54392217-54392236 | Msa0299460:CDS | 35.0% | |
| GGTTGTACTAGTCATAGATA+CGG | + | chr2_3:54392277-54392296 | Msa0299460:CDS | 35.0% | |
| ! | AGGCTTAGGGTTTTTGTTAA+TGG | + | chr2_3:54392313-54392332 | Msa0299460:CDS | 35.0% |
| !!! | TGGATGGTTGTTTTAATGTG+TGG | + | chr2_3:54392647-54392666 | Msa0299460:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | + | chr2_3:54392690-54392709 | Msa0299460:intron | 35.0% | |
| TTATGTACGGTACTACTCTA+AGG | + | chr2_3:54392884-54392903 | Msa0299460:intron | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | + | chr2_3:54393234-54393253 | Msa0299460:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+TGG | + | chr2_3:54393248-54393267 | Msa0299460:intron | 35.0% | |
| GTTCCCACAAATCCAATAAT+GGG | + | chr2_3:54393339-54393358 | Msa0299460:CDS | 35.0% | |
| ATGCTTTAGCTGATCCTAAT+TGG | + | chr2_3:54393459-54393478 | Msa0299460:CDS | 35.0% | |
| AAGTATGTTCAATCTGCTGT+AGG | + | chr2_3:54393506-54393525 | Msa0299460:intron | 35.0% | |
| ATTATCACAAGATAAGGGCT+AGG | - | chr2_3:54393562-54393581 | None:intergenic | 35.0% | |
| ATGTGGTCGAAGATATAACT+TGG | - | chr2_3:54393656-54393675 | None:intergenic | 35.0% | |
| TTGTCAAGACACTAAACTCT+AGG | - | chr2_3:54393850-54393869 | None:intergenic | 35.0% | |
| TGTCTTGACAATGCAACTTT+GGG | + | chr2_3:54393859-54393878 | Msa0299460:intron | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+CGG | + | chr2_3:54393915-54393934 | Msa0299460:intron | 35.0% |
| ! | TTTAAAGGCATGACCAAGAT+TGG | - | chr2_3:54393945-54393964 | None:intergenic | 35.0% |
| GTATCGTGAAAGAACTATCA+CGG | + | chr2_3:54394100-54394119 | Msa0299460:intron | 35.0% | |
| TTACGTAGTTATTGCTGTAG+CGG | + | chr2_3:54394169-54394188 | Msa0299460:intron | 35.0% | |
| ! | TGTGATGATGAAGAAGAAAG+AGG | + | chr2_3:54394452-54394471 | Msa0299460:CDS | 35.0% |
| TTGTAAAGTCCATACAAGTC+TGG | - | chr2_3:54394583-54394602 | None:intergenic | 35.0% | |
| AGACTTGTATGGACTTTACA+AGG | + | chr2_3:54394582-54394601 | Msa0299460:CDS | 35.0% | |
| ! | TCGAGTATGAGTGTTGTGTT+CGG | + | chr2_3:54392474-54392493 | Msa0299460:intron | 40.0% |
| !!! | TTCGGTGTCCGTGTTTATTT+TGG | + | chr2_3:54392492-54392511 | Msa0299460:intron | 40.0% |
| TTGATATTGGCACGTGTCAT+TGG | + | chr2_3:54392619-54392638 | Msa0299460:intron | 40.0% | |
| AATTCTTACGTTGTGGCTAG+TGG | + | chr2_3:54392943-54392962 | Msa0299460:intron | 40.0% | |
| ! | ATTCTGGAAGAGAAACAGCT+AGG | + | chr2_3:54393213-54393232 | Msa0299460:CDS | 40.0% |
| GAAGAGAAACAGCTAGGAAA+TGG | + | chr2_3:54393219-54393238 | Msa0299460:CDS | 40.0% | |
| ATTGGATTTGTGGGAACCAT+TGG | - | chr2_3:54393336-54393355 | None:intergenic | 40.0% | |
| GGTTCCCACAAATCCAATAA+TGG | + | chr2_3:54393338-54393357 | Msa0299460:CDS | 40.0% | |
| CTGCCCATTATTGGATTTGT+GGG | - | chr2_3:54393345-54393364 | None:intergenic | 40.0% | |
| TACAGCAGATAAACTCGTCA+CGG | - | chr2_3:54393376-54393395 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | - | chr2_3:54393424-54393443 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | - | chr2_3:54393427-54393446 | None:intergenic | 40.0% |
| ! | TAGGATCAGCTAAAGCATCA+TGG | - | chr2_3:54393457-54393476 | None:intergenic | 40.0% |
| GTGTCTTGACAATGCAACTT+TGG | + | chr2_3:54393858-54393877 | Msa0299460:intron | 40.0% | |
| GTCTTGACAATGCAACTTTG+GGG | + | chr2_3:54393860-54393879 | Msa0299460:intron | 40.0% | |
| TAACCGTGACAGTTCTTTCA+GGG | - | chr2_3:54394035-54394054 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | - | chr2_3:54394562-54394581 | None:intergenic | 40.0% | |
| ! | TCGAGTATGAGTGTTGTGTT+CGG | + | chr2_3:54392474-54392493 | Msa0299460:intron | 40.0% |
| !!! | TTCGGTGTCCGTGTTTATTT+TGG | + | chr2_3:54392492-54392511 | Msa0299460:intron | 40.0% |
| TTGATATTGGCACGTGTCAT+TGG | + | chr2_3:54392619-54392638 | Msa0299460:intron | 40.0% | |
| AATTCTTACGTTGTGGCTAG+TGG | + | chr2_3:54392943-54392962 | Msa0299460:intron | 40.0% | |
| ! | ATTCTGGAAGAGAAACAGCT+AGG | + | chr2_3:54393213-54393232 | Msa0299460:CDS | 40.0% |
| GAAGAGAAACAGCTAGGAAA+TGG | + | chr2_3:54393219-54393238 | Msa0299460:CDS | 40.0% | |
| ATTGGATTTGTGGGAACCAT+TGG | - | chr2_3:54393336-54393355 | None:intergenic | 40.0% | |
| GGTTCCCACAAATCCAATAA+TGG | + | chr2_3:54393338-54393357 | Msa0299460:CDS | 40.0% | |
| CTGCCCATTATTGGATTTGT+GGG | - | chr2_3:54393345-54393364 | None:intergenic | 40.0% | |
| TACAGCAGATAAACTCGTCA+CGG | - | chr2_3:54393376-54393395 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | - | chr2_3:54393424-54393443 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | - | chr2_3:54393427-54393446 | None:intergenic | 40.0% |
| ! | TAGGATCAGCTAAAGCATCA+TGG | - | chr2_3:54393457-54393476 | None:intergenic | 40.0% |
| GTGTCTTGACAATGCAACTT+TGG | + | chr2_3:54393858-54393877 | Msa0299460:intron | 40.0% | |
| GTCTTGACAATGCAACTTTG+GGG | + | chr2_3:54393860-54393879 | Msa0299460:intron | 40.0% | |
| TAACCGTGACAGTTCTTTCA+GGG | - | chr2_3:54394035-54394054 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | - | chr2_3:54394562-54394581 | None:intergenic | 40.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | + | chr2_3:54392175-54392194 | Msa0299460:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | + | chr2_3:54392176-54392195 | Msa0299460:CDS | 45.0% |
| CATAGATACGGTGATGCTGT+TGG | + | chr2_3:54392289-54392308 | Msa0299460:CDS | 45.0% | |
| TGATGCTGTTGGAAGGCTTA+GGG | + | chr2_3:54392300-54392319 | Msa0299460:CDS | 45.0% | |
| ATCACTTGTGAATGCATCCC+TGG | + | chr2_3:54392346-54392365 | Msa0299460:CDS | 45.0% | |
| AAGGACATTCTTCACAGCCA+GGG | - | chr2_3:54392366-54392385 | None:intergenic | 45.0% | |
| AAAGGACATTCTTCACAGCC+AGG | - | chr2_3:54392367-54392386 | None:intergenic | 45.0% | |
| GCAGGAGTCAACTTGTCTAT+TGG | - | chr2_3:54393179-54393198 | None:intergenic | 45.0% | |
| GAATGTTTCTCAAACGCAGC+AGG | - | chr2_3:54393197-54393216 | None:intergenic | 45.0% | |
| GCTGCGTTTGAGAAACATTC+TGG | + | chr2_3:54393197-54393216 | Msa0299460:CDS | 45.0% | |
| CCTGCCCATTATTGGATTTG+TGG | - | chr2_3:54393346-54393365 | None:intergenic | 45.0% | |
| !! | CCACAAATCCAATAATGGGC+AGG | + | chr2_3:54393343-54393362 | Msa0299460:CDS | 45.0% |
| ! | CTAGATGTAACAAAGAGCGC+AGG | + | chr2_3:54393396-54393415 | Msa0299460:CDS | 45.0% |
| ACAAGATAAGGGCTAGGCAA+GGG | - | chr2_3:54393556-54393575 | None:intergenic | 45.0% | |
| CGACCACATTGTAGTAACTC+TGG | + | chr2_3:54393667-54393686 | Msa0299460:intron | 45.0% | |
| TGGCCAGAGTTACTACAATG+TGG | - | chr2_3:54393673-54393692 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | chr2_3:54393779-54393798 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr2_3:54393784-54393803 | None:intergenic | 45.0% |
| CATGAACGGTGTTCCAATCT+TGG | + | chr2_3:54393929-54393948 | Msa0299460:intron | 45.0% | |
| GTAACCGTGACAGTTCTTTC+AGG | - | chr2_3:54394036-54394055 | None:intergenic | 45.0% | |
| ! | ACAAGAAGTGCAACCTTTGC+AGG | - | chr2_3:54394516-54394535 | None:intergenic | 45.0% |
| TGCACTTCTTGTGTGTGCTT+TGG | + | chr2_3:54394524-54394543 | Msa0299460:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | + | chr2_3:54394571-54394590 | Msa0299460:CDS | 45.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | + | chr2_3:54392175-54392194 | Msa0299460:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | + | chr2_3:54392176-54392195 | Msa0299460:CDS | 45.0% |
| CATAGATACGGTGATGCTGT+TGG | + | chr2_3:54392289-54392308 | Msa0299460:CDS | 45.0% | |
| TGATGCTGTTGGAAGGCTTA+GGG | + | chr2_3:54392300-54392319 | Msa0299460:CDS | 45.0% | |
| ATCACTTGTGAATGCATCCC+TGG | + | chr2_3:54392346-54392365 | Msa0299460:CDS | 45.0% | |
| AAGGACATTCTTCACAGCCA+GGG | - | chr2_3:54392366-54392385 | None:intergenic | 45.0% | |
| AAAGGACATTCTTCACAGCC+AGG | - | chr2_3:54392367-54392386 | None:intergenic | 45.0% | |
| GCAGGAGTCAACTTGTCTAT+TGG | - | chr2_3:54393179-54393198 | None:intergenic | 45.0% | |
| GAATGTTTCTCAAACGCAGC+AGG | - | chr2_3:54393197-54393216 | None:intergenic | 45.0% | |
| GCTGCGTTTGAGAAACATTC+TGG | + | chr2_3:54393197-54393216 | Msa0299460:CDS | 45.0% | |
| CCTGCCCATTATTGGATTTG+TGG | - | chr2_3:54393346-54393365 | None:intergenic | 45.0% | |
| !! | CCACAAATCCAATAATGGGC+AGG | + | chr2_3:54393343-54393362 | Msa0299460:CDS | 45.0% |
| ! | CTAGATGTAACAAAGAGCGC+AGG | + | chr2_3:54393396-54393415 | Msa0299460:CDS | 45.0% |
| ACAAGATAAGGGCTAGGCAA+GGG | - | chr2_3:54393556-54393575 | None:intergenic | 45.0% | |
| CGACCACATTGTAGTAACTC+TGG | + | chr2_3:54393667-54393686 | Msa0299460:intron | 45.0% | |
| TGGCCAGAGTTACTACAATG+TGG | - | chr2_3:54393673-54393692 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | chr2_3:54393779-54393798 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr2_3:54393784-54393803 | None:intergenic | 45.0% |
| CATGAACGGTGTTCCAATCT+TGG | + | chr2_3:54393929-54393948 | Msa0299460:intron | 45.0% | |
| GTAACCGTGACAGTTCTTTC+AGG | - | chr2_3:54394036-54394055 | None:intergenic | 45.0% | |
| ! | ACAAGAAGTGCAACCTTTGC+AGG | - | chr2_3:54394516-54394535 | None:intergenic | 45.0% |
| TGCACTTCTTGTGTGTGCTT+TGG | + | chr2_3:54394524-54394543 | Msa0299460:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | + | chr2_3:54394571-54394590 | Msa0299460:CDS | 45.0% | |
| GATACGGTGATGCTGTTGGA+AGG | + | chr2_3:54392293-54392312 | Msa0299460:CDS | 50.0% | |
| GTGATGCTGTTGGAAGGCTT+AGG | + | chr2_3:54392299-54392318 | Msa0299460:CDS | 50.0% | |
| ! | CGTGTCATTGGCACATTGGA+TGG | + | chr2_3:54392631-54392650 | Msa0299460:intron | 50.0% |
| !! | GGTAACAGTTGATGGCGAGA+AGG | + | chr2_3:54393256-54393275 | Msa0299460:intron | 50.0% |
| AGCAGATAAACTCGTCACGG+TGG | - | chr2_3:54393373-54393392 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | + | chr2_3:54393418-54393437 | Msa0299460:CDS | 50.0% | |
| CACAAGATAAGGGCTAGGCA+AGG | - | chr2_3:54393557-54393576 | None:intergenic | 50.0% | |
| TGTTAGCCGATCCCACTTAG+TGG | + | chr2_3:54393770-54393789 | Msa0299460:intron | 50.0% | |
| GTTAGCCGATCCCACTTAGT+GGG | + | chr2_3:54393771-54393790 | Msa0299460:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | chr2_3:54393777-54393796 | Msa0299460:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr2_3:54393785-54393804 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr2_3:54393782-54393801 | Msa0299460:intron | 50.0% | |
| CTGCCCTGAAAGAACTGTCA+CGG | + | chr2_3:54394029-54394048 | Msa0299460:intron | 50.0% | |
| ACTCATTCTGCAGCCTGCAA+AGG | + | chr2_3:54394500-54394519 | Msa0299460:CDS | 50.0% | |
| GATACGGTGATGCTGTTGGA+AGG | + | chr2_3:54392293-54392312 | Msa0299460:CDS | 50.0% | |
| GTGATGCTGTTGGAAGGCTT+AGG | + | chr2_3:54392299-54392318 | Msa0299460:CDS | 50.0% | |
| ! | CGTGTCATTGGCACATTGGA+TGG | + | chr2_3:54392631-54392650 | Msa0299460:intron | 50.0% |
| !! | GGTAACAGTTGATGGCGAGA+AGG | + | chr2_3:54393256-54393275 | Msa0299460:intron | 50.0% |
| AGCAGATAAACTCGTCACGG+TGG | - | chr2_3:54393373-54393392 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | + | chr2_3:54393418-54393437 | Msa0299460:CDS | 50.0% | |
| CACAAGATAAGGGCTAGGCA+AGG | - | chr2_3:54393557-54393576 | None:intergenic | 50.0% | |
| TGTTAGCCGATCCCACTTAG+TGG | + | chr2_3:54393770-54393789 | Msa0299460:intron | 50.0% | |
| GTTAGCCGATCCCACTTAGT+GGG | + | chr2_3:54393771-54393790 | Msa0299460:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | chr2_3:54393777-54393796 | Msa0299460:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr2_3:54393785-54393804 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr2_3:54393782-54393801 | Msa0299460:intron | 50.0% | |
| CTGCCCTGAAAGAACTGTCA+CGG | + | chr2_3:54394029-54394048 | Msa0299460:intron | 50.0% | |
| ACTCATTCTGCAGCCTGCAA+AGG | + | chr2_3:54394500-54394519 | Msa0299460:CDS | 50.0% | |
| ! | GGCACGTGTCATTGGCACAT+TGG | + | chr2_3:54392627-54392646 | Msa0299460:intron | 55.0% |
| GGCAGTCGCAGAGTTTACAG+AGG | + | chr2_3:54394473-54394492 | Msa0299460:CDS | 55.0% | |
| ! | GGCACGTGTCATTGGCACAT+TGG | + | chr2_3:54392627-54392646 | Msa0299460:intron | 55.0% |
| GGCAGTCGCAGAGTTTACAG+AGG | + | chr2_3:54394473-54394492 | Msa0299460:CDS | 55.0% | |
| GTGGCACGCCTGCCCATTAT+TGG | - | chr2_3:54393354-54393373 | None:intergenic | 60.0% | |
| GTGGCACGCCTGCCCATTAT+TGG | - | chr2_3:54393354-54393373 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54392169 | 54394619 | 54392169 | ID=Msa0299460;Name=Msa0299460 |
| chr2_3 | mRNA | 54392169 | 54394619 | 54392169 | ID=Msa0299460-mRNA-1;Parent=Msa0299460;Name=Msa0299460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0.33|0.25|4|0|229 |
| chr2_3 | exon | 54392169 | 54392379 | 54392169 | ID=Msa0299460-mRNA-1:exon:17383;Parent=Msa0299460-mRNA-1 |
| chr2_3 | exon | 54393183 | 54393256 | 54393183 | ID=Msa0299460-mRNA-1:exon:17384;Parent=Msa0299460-mRNA-1 |
| chr2_3 | exon | 54393278 | 54393507 | 54393278 | ID=Msa0299460-mRNA-1:exon:17385;Parent=Msa0299460-mRNA-1 |
| chr2_3 | exon | 54394445 | 54394619 | 54394445 | ID=Msa0299460-mRNA-1:exon:17386;Parent=Msa0299460-mRNA-1 |
| chr2_3 | CDS | 54392169 | 54392379 | 54392169 | ID=Msa0299460-mRNA-1:cds;Parent=Msa0299460-mRNA-1 |
| chr2_3 | CDS | 54393183 | 54393256 | 54393183 | ID=Msa0299460-mRNA-1:cds;Parent=Msa0299460-mRNA-1 |
| chr2_3 | CDS | 54393278 | 54393507 | 54393278 | ID=Msa0299460-mRNA-1:cds;Parent=Msa0299460-mRNA-1 |
| chr2_3 | CDS | 54394445 | 54394619 | 54394445 | ID=Msa0299460-mRNA-1:cds;Parent=Msa0299460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
