Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299840 | XP_024631410.1 | 91.753 | 194 | 16 | 0 | 1 | 194 | 1 | 194 | 4.27e-132 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299840 | sp|F4JL28|EBS_ARATH | 54.505 | 222 | 88 | 3 | 10 | 220 | 1 | 220 | 7.85e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299840 | A0A396JHA7 | 91.753 | 194 | 16 | 0 | 1 | 194 | 1 | 194 | 2.04e-132 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0299840 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299840 | MtrunA17_Chr2g0324381 | 91.753 | 194 | 16 | 0 | 1 | 194 | 1 | 194 | 3.93e-136 | 382 |
| Msa0299840 | MtrunA17_Chr2g0316511 | 60.697 | 201 | 74 | 3 | 10 | 207 | 1 | 199 | 5.79e-74 | 225 |
| Msa0299840 | MtrunA17_Chr3g0145031 | 50.785 | 191 | 86 | 5 | 10 | 194 | 1 | 189 | 1.85e-60 | 191 |
| Msa0299840 | MtrunA17_Chr3g0145041 | 52.727 | 165 | 72 | 3 | 31 | 194 | 8 | 167 | 1.49e-53 | 172 |
| Msa0299840 | MtrunA17_Chr2g0324361 | 67.708 | 96 | 29 | 1 | 34 | 129 | 14 | 107 | 6.24e-40 | 134 |
| Msa0299840 | MtrunA17_Chr2g0324351 | 68.919 | 74 | 23 | 0 | 198 | 271 | 179 | 252 | 3.52e-25 | 104 |
| Msa0299840 | MtrunA17_Chr5g0447451 | 43.119 | 109 | 53 | 3 | 82 | 181 | 20 | 128 | 1.09e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299840 | AT4G22140.2 | 54.299 | 221 | 88 | 3 | 10 | 219 | 1 | 219 | 4.07e-76 | 231 |
| Msa0299840 | AT4G22140.1 | 54.505 | 222 | 88 | 3 | 10 | 220 | 1 | 220 | 7.98e-76 | 231 |
| Msa0299840 | AT4G22140.3 | 54.505 | 222 | 88 | 3 | 10 | 220 | 1 | 220 | 7.98e-76 | 231 |
| Msa0299840 | AT4G39100.1 | 51.136 | 176 | 82 | 3 | 21 | 194 | 14 | 187 | 3.36e-58 | 186 |
| Msa0299840 | AT4G04260.2 | 55.090 | 167 | 71 | 3 | 34 | 199 | 10 | 173 | 1.56e-52 | 171 |
| Msa0299840 | AT4G39100.2 | 53.691 | 149 | 67 | 2 | 21 | 167 | 14 | 162 | 3.48e-50 | 163 |
| Msa0299840 | AT4G04260.1 | 55.844 | 154 | 65 | 2 | 46 | 199 | 10 | 160 | 5.80e-50 | 164 |
| Msa0299840 | AT4G04260.3 | 53.571 | 140 | 61 | 3 | 10 | 145 | 1 | 140 | 1.87e-39 | 135 |
Find 73 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGCATGCCCACGCATTT+AGG | 0.253844 | 2_3:-55085479 | None:intergenic |
| AAGGGGCCATAAGCTGTTTC+TGG | 0.271004 | 2_3:-55087996 | None:intergenic |
| AGGGGAAAATTTATAGTCAT+TGG | 0.305089 | 2_3:-55087875 | None:intergenic |
| ACGATTACTTTAGCAGGTTC+TGG | 0.332292 | 2_3:+55085037 | Msa0299840:CDS |
| ATTAACCTATCCGGGTTATA+AGG | 0.334701 | 2_3:-55085233 | None:intergenic |
| AACGAGTATGTTGTGTGGTT+TGG | 0.341268 | 2_3:-55088047 | None:intergenic |
| TTATAACCCGGATAGGTTAA+TGG | 0.355817 | 2_3:+55085235 | Msa0299840:CDS |
| TAAAATCGACGCCATCGATT+AGG | 0.368427 | 2_3:-55084141 | None:intergenic |
| AGCTCTTGCCCTTTCTCATC+GGG | 0.381643 | 2_3:+55087966 | Msa0299840:CDS |
| TGCCTTCCAGAAACAGCTTA+TGG | 0.383427 | 2_3:+55087990 | Msa0299840:CDS |
| GATTTCATTGCTTCATCAAA+AGG | 0.383487 | 2_3:-55085497 | None:intergenic |
| ACTTACACTTCAACGCGTTC+AGG | 0.403385 | 2_3:-55085087 | None:intergenic |
| CACAGCACCATTAACCTATC+CGG | 0.404617 | 2_3:-55085242 | None:intergenic |
| ACGAGTATGTTGTGTGGTTT+GGG | 0.412377 | 2_3:-55088046 | None:intergenic |
| CGCATTCTGTTTCTGAGAAA+GGG | 0.423600 | 2_3:-55084239 | None:intergenic |
| GTTTGGGTCACATTTGGTGC+TGG | 0.431641 | 2_3:-55088030 | None:intergenic |
| GCGCATTCTGTTTCTGAGAA+AGG | 0.438042 | 2_3:-55084240 | None:intergenic |
| TTGGTTTGTTCCTGCCAGTA+TGG | 0.439578 | 2_3:-55084786 | None:intergenic |
| GTTGGACCATTGGCGAGGTT+GGG | 0.440411 | 2_3:-55088093 | None:intergenic |
| TAGCTCTTGCCCTTTCTCAT+CGG | 0.440980 | 2_3:+55087965 | Msa0299840:CDS |
| TGTGTGGTTTGGGTCACATT+TGG | 0.441724 | 2_3:-55088036 | None:intergenic |
| AGTTGGACCATTGGCGAGGT+TGG | 0.443323 | 2_3:-55088094 | None:intergenic |
| CGACAACAAGGCAAGGGAAA+AGG | 0.450024 | 2_3:+55084288 | Msa0299840:CDS |
| AAAACATACGCGTCCTTCAA+TGG | 0.453876 | 2_3:-55084893 | None:intergenic |
| GGCACCAACACGGTCGTTAG+AGG | 0.459119 | 2_3:+55084329 | Msa0299840:CDS |
| AGAGCTAGCTGCTGGTTATG+TGG | 0.467673 | 2_3:-55087949 | None:intergenic |
| GTGCTAACGATTACTTTAGC+AGG | 0.480077 | 2_3:+55085031 | Msa0299840:CDS |
| CAGCAACCTACAGAACATAA+TGG | 0.494473 | 2_3:+55084265 | Msa0299840:CDS |
| AGGATAATATGAACAGAATG+AGG | 0.500778 | 2_3:+55084836 | Msa0299840:CDS |
| GCGAGGTTGGGTGAAGATGC+GGG | 0.503001 | 2_3:-55088081 | None:intergenic |
| CGTCCTTCAATGGTTTCCTC+AGG | 0.503827 | 2_3:-55084883 | None:intergenic |
| CAGATACTGACTGAGGTAGT+TGG | 0.506587 | 2_3:-55088111 | None:intergenic |
| GGAAGGCAACCCGATGAGAA+AGG | 0.510321 | 2_3:-55087975 | None:intergenic |
| AAAAGGAACAAATACACAAT+CGG | 0.520774 | 2_3:+55084305 | Msa0299840:CDS |
| GGCGAGGTTGGGTGAAGATG+CGG | 0.521906 | 2_3:-55088082 | None:intergenic |
| CATAGTGCTGACACAATTGA+AGG | 0.525786 | 2_3:+55084958 | Msa0299840:CDS |
| TACATGAAGCTTGAAGTTGT+AGG | 0.537934 | 2_3:+55085009 | Msa0299840:CDS |
| GACTGAGGTAGTTGGACCAT+TGG | 0.539614 | 2_3:-55088103 | None:intergenic |
| GAAGGCAACCCGATGAGAAA+GGG | 0.540095 | 2_3:-55087974 | None:intergenic |
| GGTGCTGGAGCATGAGATGA+AGG | 0.542852 | 2_3:-55088015 | None:intergenic |
| TTGTCGCCATTATGTTCTGT+AGG | 0.543808 | 2_3:-55084271 | None:intergenic |
| GAGCTAGCTGCTGGTTATGT+GGG | 0.549335 | 2_3:-55087948 | None:intergenic |
| CGACCTGAGGAAACCATTGA+AGG | 0.551081 | 2_3:+55084880 | Msa0299840:CDS |
| AAATGCCTTATAACCCGGAT+AGG | 0.557757 | 2_3:+55085228 | Msa0299840:CDS |
| GAATGAGGGTCTATGTAAGA+AGG | 0.562196 | 2_3:+55084851 | Msa0299840:CDS |
| CCGTGTGGAAAAGATTGAGC+AGG | 0.565789 | 2_3:+55084816 | Msa0299840:CDS |
| TTATGTTCTGTAGGTTGCTG+CGG | 0.575653 | 2_3:-55084262 | None:intergenic |
| AAAGGGCAAGAGCTAGCTGC+TGG | 0.577651 | 2_3:-55087957 | None:intergenic |
| AAAAGGAATTACCTAATCGA+TGG | 0.579467 | 2_3:+55084130 | Msa0299840:five_prime_UTR |
| CAGGTACCATCCTAAATGCG+TGG | 0.581382 | 2_3:+55085469 | Msa0299840:intron |
| ACAGCACCATTAACCTATCC+GGG | 0.588194 | 2_3:-55085241 | None:intergenic |
| TCTTCACCCAACCTCGCCAA+TGG | 0.588215 | 2_3:+55088087 | Msa0299840:CDS |
| ATGTGAAATGCCTTATAACC+CGG | 0.595533 | 2_3:+55085223 | Msa0299840:CDS |
| GGCCATAAGCTGTTTCTGGA+AGG | 0.600145 | 2_3:-55087992 | None:intergenic |
| GCATGCCCACGCATTTAGGA+TGG | 0.615056 | 2_3:-55085475 | None:intergenic |
| GTGCTGGAGCATGAGATGAA+GGG | 0.619432 | 2_3:-55088014 | None:intergenic |
| ATAATGGCGACAACAAGGCA+AGG | 0.623162 | 2_3:+55084281 | Msa0299840:CDS |
| AGGTACCATCCTAAATGCGT+GGG | 0.636148 | 2_3:+55085470 | Msa0299840:intron |
| AGAACATAATGGCGACAACA+AGG | 0.636635 | 2_3:+55084276 | Msa0299840:CDS |
| TGCTGGAGCATGAGATGAAG+GGG | 0.639280 | 2_3:-55088013 | None:intergenic |
| TGTGTGGAAGTTGCAATCAA+AGG | 0.645860 | 2_3:+55085261 | Msa0299840:CDS |
| AGGTAGTTGGACCATTGGCG+AGG | 0.652942 | 2_3:-55088098 | None:intergenic |
| GGATAATATGAACAGAATGA+GGG | 0.654950 | 2_3:+55084837 | Msa0299840:CDS |
| ATAGTGCTGACACAATTGAA+GGG | 0.668881 | 2_3:+55084959 | Msa0299840:CDS |
| ATTACCTCTAACGACCGTGT+TGG | 0.672565 | 2_3:-55084333 | None:intergenic |
| CACAATCGGAGGCACCAACA+CGG | 0.673961 | 2_3:+55084319 | Msa0299840:CDS |
| TAATGGCGACAACAAGGCAA+GGG | 0.678546 | 2_3:+55084282 | Msa0299840:CDS |
| AGGAACAAATACACAATCGG+AGG | 0.686184 | 2_3:+55084308 | Msa0299840:CDS |
| CAAACCAATCATAGCCCGTG+TGG | 0.703357 | 2_3:+55084801 | Msa0299840:CDS |
| AAGAAGGTATTATCGACCTG+AGG | 0.704026 | 2_3:+55084867 | Msa0299840:CDS |
| ACTGTATCAGATACTGACTG+AGG | 0.716589 | 2_3:-55088118 | None:intergenic |
| GTAATAACGAGTATGTTGTG+TGG | 0.726053 | 2_3:-55088052 | None:intergenic |
| GATAGGTTAATGGTGCTGTG+TGG | 0.736018 | 2_3:+55085245 | Msa0299840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAAAGAAAATAAAAA+AGG | + | chr2_3:55084113-55084132 | Msa0299840:five_prime_UTR | 10.0% |
| !! | GAAAAATTAATTAGGTTTAA+TGG | - | chr2_3:55084204-55084223 | None:intergenic | 15.0% |
| !!! | AAACCTAATTAATTTTTCAT+AGG | + | chr2_3:55084206-55084225 | Msa0299840:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTAACCATGTTAT+TGG | + | chr2_3:55086922-55086941 | Msa0299840:intron | 15.0% |
| !!! | AATTTTACTGATTTATTACT+AGG | - | chr2_3:55087101-55087120 | None:intergenic | 15.0% |
| !!! | AAACACTGATATTTTTTTCT+AGG | + | chr2_3:55085112-55085131 | Msa0299840:intron | 20.0% |
| !!! | AACACTGATATTTTTTTCTA+GGG | + | chr2_3:55085113-55085132 | Msa0299840:intron | 20.0% |
| !!! | ATTTTACTTTTATGTTTCGA+AGG | + | chr2_3:55085192-55085211 | Msa0299840:intron | 20.0% |
| !! | TGTATAATGAATTATTATGC+AGG | + | chr2_3:55085308-55085327 | Msa0299840:intron | 20.0% |
| !!! | TTGTTTTAATGAATGTATGA+TGG | - | chr2_3:55085344-55085363 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAACTGAACTT+GGG | - | chr2_3:55086065-55086084 | None:intergenic | 20.0% |
| !! | TATTGGAAGATATAGAAATT+TGG | - | chr2_3:55086253-55086272 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTCTAATGTCTT+TGG | + | chr2_3:55086344-55086363 | Msa0299840:intron | 20.0% |
| !! | ATATGAGAGTTAAATTAACT+AGG | + | chr2_3:55086399-55086418 | Msa0299840:intron | 20.0% |
| !! | ATATTTCATGTATCTGAATT+TGG | + | chr2_3:55086465-55086484 | Msa0299840:intron | 20.0% |
| !! | TAATTGAGTAAATTTATCAG+AGG | + | chr2_3:55086772-55086791 | Msa0299840:intron | 20.0% |
| !! | ACAATTCCTATTCAATTTAA+TGG | - | chr2_3:55086872-55086891 | None:intergenic | 20.0% |
| !!! | ATTGTATTAAGAACTTTTTG+TGG | + | chr2_3:55086887-55086906 | Msa0299840:intron | 20.0% |
| !! | TGATTATTAACTTCTTATTG+TGG | + | chr2_3:55087296-55087315 | Msa0299840:intron | 20.0% |
| !! | GATTATTAACTTCTTATTGT+GGG | + | chr2_3:55087297-55087316 | Msa0299840:intron | 20.0% |
| !! | AAAAATTATAAGCTTGAGAA+TGG | - | chr2_3:55087383-55087402 | None:intergenic | 20.0% |
| !!! | TCAAGCTTATAATTTTTAAG+TGG | + | chr2_3:55087386-55087405 | Msa0299840:intron | 20.0% |
| !!! | CAAGCTTATAATTTTTAAGT+GGG | + | chr2_3:55087387-55087406 | Msa0299840:intron | 20.0% |
| ! | CTGCCTATGAAAAATTAATT+AGG | - | chr2_3:55084212-55084231 | None:intergenic | 25.0% |
| ! | AAAAGGAACAAATACACAAT+CGG | + | chr2_3:55084305-55084324 | Msa0299840:CDS | 25.0% |
| ! | AAGTAGATAGTTCAAAAACA+TGG | + | chr2_3:55084432-55084451 | Msa0299840:intron | 25.0% |
| !!! | ACACTGATATTTTTTTCTAG+GGG | + | chr2_3:55085114-55085133 | Msa0299840:intron | 25.0% |
| !! | ATCAAAGGTAAATTGGATTT+TGG | + | chr2_3:55085276-55085295 | Msa0299840:intron | 25.0% |
| !! | TCAAAGGTAAATTGGATTTT+GGG | + | chr2_3:55085277-55085296 | Msa0299840:intron | 25.0% |
| ! | GAAATATTTCAATTTCTTGC+AGG | + | chr2_3:55085450-55085469 | Msa0299840:intron | 25.0% |
| ! | AAAATGTTCACCTGATTTAA+AGG | + | chr2_3:55085544-55085563 | Msa0299840:intron | 25.0% |
| ! | ATCATAACATAAGAAACAGT+AGG | - | chr2_3:55085701-55085720 | None:intergenic | 25.0% |
| ! | GTAATTAGTTATGCACTTAA+AGG | + | chr2_3:55085859-55085878 | Msa0299840:intron | 25.0% |
| !! | GTTTTTAACAAAACTGAACT+TGG | - | chr2_3:55086066-55086085 | None:intergenic | 25.0% |
| !!! | AGTTCAGTTTTGTTAAAAAC+CGG | + | chr2_3:55086066-55086085 | Msa0299840:intron | 25.0% |
| ! | TTGTTAAATAGTAGCTATAG+CGG | + | chr2_3:55086155-55086174 | Msa0299840:intron | 25.0% |
| ! | AGTTAAATTAACTAGGACTA+TGG | + | chr2_3:55086406-55086425 | Msa0299840:intron | 25.0% |
| ! | TAGATCACTAGTAAACAATT+AGG | + | chr2_3:55086570-55086589 | Msa0299840:intron | 25.0% |
| ! | TTTAATGGTAACCTTAACAT+CGG | - | chr2_3:55086857-55086876 | None:intergenic | 25.0% |
| ! | AGGTTACCATTAAATTGAAT+AGG | + | chr2_3:55086863-55086882 | Msa0299840:intron | 25.0% |
| !!! | TTTGAACGTAATCTGTTTTT+TGG | + | chr2_3:55087064-55087083 | Msa0299840:intron | 25.0% |
| ! | ATAAGCTAAAATAATCAGTC+AGG | - | chr2_3:55087689-55087708 | None:intergenic | 25.0% |
| ! | TCGAAATCAAGAATAGATAA+CGG | - | chr2_3:55087825-55087844 | None:intergenic | 25.0% |
| !! | AAATTTTGCTTTGTACTTCA+AGG | + | chr2_3:55087844-55087863 | Msa0299840:intron | 25.0% |
| !!! | ATCAGTTCTGTTTTGATTTA+AGG | - | chr2_3:55087905-55087924 | None:intergenic | 25.0% |
| AAAAGGAATTACCTAATCGA+TGG | + | chr2_3:55084130-55084149 | Msa0299840:five_prime_UTR | 30.0% | |
| ! | TTTGAAGCAATTTGCTTAAC+AGG | - | chr2_3:55084388-55084407 | None:intergenic | 30.0% |
| !!! | GTTTTAAATTGCACTGATTG+TGG | - | chr2_3:55084678-55084697 | None:intergenic | 30.0% |
| AGGATAATATGAACAGAATG+AGG | + | chr2_3:55084836-55084855 | Msa0299840:CDS | 30.0% | |
| GGATAATATGAACAGAATGA+GGG | + | chr2_3:55084837-55084856 | Msa0299840:CDS | 30.0% | |
| AGTTGCAATCAAAGGTAAAT+TGG | + | chr2_3:55085269-55085288 | Msa0299840:intron | 30.0% | |
| TGAATGTATGATGGCAAATA+AGG | - | chr2_3:55085335-55085354 | None:intergenic | 30.0% | |
| ! | AGAGTATCTAAGAAGTAATG+CGG | + | chr2_3:55085382-55085401 | Msa0299840:intron | 30.0% |
| AGATCTGTAAGGAAATAAAC+TGG | - | chr2_3:55085423-55085442 | None:intergenic | 30.0% | |
| TTTCTGTCATAAGATCTGTA+AGG | - | chr2_3:55085434-55085453 | None:intergenic | 30.0% | |
| GATTTCATTGCTTCATCAAA+AGG | - | chr2_3:55085500-55085519 | None:intergenic | 30.0% | |
| AGTCTCTAATCCTTTAAATC+AGG | - | chr2_3:55085557-55085576 | None:intergenic | 30.0% | |
| !!! | AAAGCTGTTTTCTTTTTCGA+AGG | + | chr2_3:55085599-55085618 | Msa0299840:intron | 30.0% |
| CATGTGTGTTTCTTTATTCT+TGG | + | chr2_3:55085747-55085766 | Msa0299840:intron | 30.0% | |
| TTTCTTTATTCTTGGTACCA+TGG | + | chr2_3:55085755-55085774 | Msa0299840:intron | 30.0% | |
| CAAACAGATAAATCAAACCA+TGG | - | chr2_3:55085775-55085794 | None:intergenic | 30.0% | |
| !! | TTATCTGTTTGTTTTCTGCA+TGG | + | chr2_3:55085784-55085803 | Msa0299840:intron | 30.0% |
| ATCTGTGTTAAAACCATTGA+AGG | - | chr2_3:55085932-55085951 | None:intergenic | 30.0% | |
| TTAGCAACATACTTTGATGT+TGG | + | chr2_3:55086743-55086762 | Msa0299840:intron | 30.0% | |
| TAGCAACATACTTTGATGTT+GGG | + | chr2_3:55086744-55086763 | Msa0299840:intron | 30.0% | |
| !!! | ATTGTGATGCTCTTGTTTTA+AGG | + | chr2_3:55086818-55086837 | Msa0299840:intron | 30.0% |
| AATTAGTCATCTGCAAAGTT+TGG | - | chr2_3:55086961-55086980 | None:intergenic | 30.0% | |
| ! | CTTTGCAGATGACTAATTTT+TGG | + | chr2_3:55086963-55086982 | Msa0299840:intron | 30.0% |
| ! | CATTTTATTAACCTTGTGGT+TGG | - | chr2_3:55087037-55087056 | None:intergenic | 30.0% |
| ACCACAAGGTTAATAAAATG+TGG | + | chr2_3:55087037-55087056 | Msa0299840:intron | 30.0% | |
| ! | TCCACATTTTATTAACCTTG+TGG | - | chr2_3:55087041-55087060 | None:intergenic | 30.0% |
| CAAGTTATTGAACAAGATCA+GGG | + | chr2_3:55087133-55087152 | Msa0299840:intron | 30.0% | |
| ATGTGTACTTGTGATGATTA+TGG | + | chr2_3:55087469-55087488 | Msa0299840:intron | 30.0% | |
| AGGGGAAAATTTATAGTCAT+TGG | - | chr2_3:55087878-55087897 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATTTAAGGCAGAA+GGG | - | chr2_3:55087897-55087916 | None:intergenic | 30.0% |
| ! | AAGCAATTTGCTTAACAGGA+AGG | - | chr2_3:55084384-55084403 | None:intergenic | 35.0% |
| ! | CGTATGTTTTCATGGAGATA+AGG | + | chr2_3:55084906-55084925 | Msa0299840:CDS | 35.0% |
| !! | ATAGTGCTGACACAATTGAA+GGG | + | chr2_3:55084959-55084978 | Msa0299840:CDS | 35.0% |
| TACATGAAGCTTGAAGTTGT+AGG | + | chr2_3:55085009-55085028 | Msa0299840:CDS | 35.0% | |
| ! | TTCTGGTACAATGCTTTTAC+TGG | + | chr2_3:55085054-55085073 | Msa0299840:CDS | 35.0% |
| ! | TCTGGTACAATGCTTTTACT+GGG | + | chr2_3:55085055-55085074 | Msa0299840:CDS | 35.0% |
| ATGTGAAATGCCTTATAACC+CGG | + | chr2_3:55085223-55085242 | Msa0299840:CDS | 35.0% | |
| ATTAACCTATCCGGGTTATA+AGG | - | chr2_3:55085236-55085255 | None:intergenic | 35.0% | |
| TTATAACCCGGATAGGTTAA+TGG | + | chr2_3:55085235-55085254 | Msa0299840:CDS | 35.0% | |
| !! | TTACACTTTGAAGCACATTC+AGG | - | chr2_3:55085843-55085862 | None:intergenic | 35.0% |
| TAGAACATAAGCACCTTCAA+TGG | + | chr2_3:55085916-55085935 | Msa0299840:intron | 35.0% | |
| CAGATATGAGTCTGACTAAA+AGG | + | chr2_3:55085947-55085966 | Msa0299840:intron | 35.0% | |
| ATGAATTGTACCCTAACACT+AGG | - | chr2_3:55086040-55086059 | None:intergenic | 35.0% | |
| ! | AAACCGGTTCTATATTGTAG+TGG | + | chr2_3:55086082-55086101 | Msa0299840:intron | 35.0% |
| GTTCCACTACAATATAGAAC+CGG | - | chr2_3:55086088-55086107 | None:intergenic | 35.0% | |
| GATATGCTATGTAGGTCAAA+GGG | + | chr2_3:55086132-55086151 | Msa0299840:intron | 35.0% | |
| ! | TCAAAGTAAAGCTCTAGCTA+TGG | + | chr2_3:55086299-55086318 | Msa0299840:intron | 35.0% |
| AAAAAGTTACTGTGACCAGA+TGG | - | chr2_3:55086333-55086352 | None:intergenic | 35.0% | |
| ACTATGGTAAATACCCATGA+GGG | + | chr2_3:55086422-55086441 | Msa0299840:intron | 35.0% | |
| AATGATTGCAGTTGAAGTCA+TGG | - | chr2_3:55086801-55086820 | None:intergenic | 35.0% | |
| AAGAGATTGTTCCGATGTTA+AGG | + | chr2_3:55086843-55086862 | Msa0299840:intron | 35.0% | |
| ATCTGCTTGAAAACCTTTAG+TGG | + | chr2_3:55086992-55087011 | Msa0299840:intron | 35.0% | |
| TCTGCTTGAAAACCTTTAGT+GGG | + | chr2_3:55086993-55087012 | Msa0299840:intron | 35.0% | |
| ! | TATTAACCTTGTGGTTGGTA+GGG | - | chr2_3:55087032-55087051 | None:intergenic | 35.0% |
| TTATTAACCTTGTGGTTGGT+AGG | - | chr2_3:55087033-55087052 | None:intergenic | 35.0% | |
| GCAAGTTATTGAACAAGATC+AGG | + | chr2_3:55087132-55087151 | Msa0299840:intron | 35.0% | |
| ACAAGTACACATCAATTGGA+AGG | - | chr2_3:55087461-55087480 | None:intergenic | 35.0% | |
| CATCACAAGTACACATCAAT+TGG | - | chr2_3:55087465-55087484 | None:intergenic | 35.0% | |
| ATATGACAAAACTAGTGACC+AGG | + | chr2_3:55087541-55087560 | Msa0299840:intron | 35.0% | |
| TTGAAGATATCACATGCTTC+CGG | - | chr2_3:55087608-55087627 | None:intergenic | 35.0% | |
| AAATGCAAAAGGTAACTCAG+CGG | - | chr2_3:55087650-55087669 | None:intergenic | 35.0% | |
| CGAGAAAGAAGAAATGCAAA+AGG | - | chr2_3:55087661-55087680 | None:intergenic | 35.0% | |
| !! | ACGTTGAGTTTTAATCTTCG+TGG | + | chr2_3:55087738-55087757 | Msa0299840:intron | 35.0% |
| TTGCTTCACAAATTCAGAGA+GGG | - | chr2_3:55087801-55087820 | None:intergenic | 35.0% | |
| TTTGCTTCACAAATTCAGAG+AGG | - | chr2_3:55087802-55087821 | None:intergenic | 35.0% | |
| !!! | GTTTTGATTTAAGGCAGAAG+GGG | - | chr2_3:55087896-55087915 | None:intergenic | 35.0% |
| !!! | CTGTTTTGATTTAAGGCAGA+AGG | - | chr2_3:55087898-55087917 | None:intergenic | 35.0% |
| GTAATAACGAGTATGTTGTG+TGG | - | chr2_3:55088055-55088074 | None:intergenic | 35.0% | |
| ! | TAAAATCGACGCCATCGATT+AGG | - | chr2_3:55084144-55084163 | None:intergenic | 40.0% |
| !! | CGCATTCTGTTTCTGAGAAA+GGG | - | chr2_3:55084242-55084261 | None:intergenic | 40.0% |
| TTATGTTCTGTAGGTTGCTG+CGG | - | chr2_3:55084265-55084284 | None:intergenic | 40.0% | |
| CAGCAACCTACAGAACATAA+TGG | + | chr2_3:55084265-55084284 | Msa0299840:CDS | 40.0% | |
| TTGTCGCCATTATGTTCTGT+AGG | - | chr2_3:55084274-55084293 | None:intergenic | 40.0% | |
| AGAACATAATGGCGACAACA+AGG | + | chr2_3:55084276-55084295 | Msa0299840:CDS | 40.0% | |
| AGGAACAAATACACAATCGG+AGG | + | chr2_3:55084308-55084327 | Msa0299840:CDS | 40.0% | |
| !! | TAAGGAGAGAAGGGTTTTGA+GGG | - | chr2_3:55084359-55084378 | None:intergenic | 40.0% |
| ! | TTGCTTAACAGGAAGGTGTA+AGG | - | chr2_3:55084377-55084396 | None:intergenic | 40.0% |
| ! | GCTTCAAATCGTTCCTTTTG+CGG | + | chr2_3:55084400-55084419 | Msa0299840:intron | 40.0% |
| ATTGCAGTGCAATGTTGAAG+AGG | - | chr2_3:55084512-55084531 | None:intergenic | 40.0% | |
| TGGTGTGGTTACGAATAATG+TGG | - | chr2_3:55084565-55084584 | None:intergenic | 40.0% | |
| ! | TCCACAGTTGTTAGGGTTTT+GGG | - | chr2_3:55084593-55084612 | None:intergenic | 40.0% |
| ! | AGTTTGCTCCACAGTTGTTA+GGG | - | chr2_3:55084600-55084619 | None:intergenic | 40.0% |
| CTATGTAAACGACGCTGATA+TGG | - | chr2_3:55084712-55084731 | None:intergenic | 40.0% | |
| GAATGAGGGTCTATGTAAGA+AGG | + | chr2_3:55084851-55084870 | Msa0299840:CDS | 40.0% | |
| !! | AAGAAGGTATTATCGACCTG+AGG | + | chr2_3:55084867-55084886 | Msa0299840:CDS | 40.0% |
| AAAACATACGCGTCCTTCAA+TGG | - | chr2_3:55084896-55084915 | None:intergenic | 40.0% | |
| !! | CATAGTGCTGACACAATTGA+AGG | + | chr2_3:55084958-55084977 | Msa0299840:CDS | 40.0% |
| GTGCTAACGATTACTTTAGC+AGG | + | chr2_3:55085031-55085050 | Msa0299840:CDS | 40.0% | |
| ACGATTACTTTAGCAGGTTC+TGG | + | chr2_3:55085037-55085056 | Msa0299840:CDS | 40.0% | |
| ! | CTGGTACAATGCTTTTACTG+GGG | + | chr2_3:55085056-55085075 | Msa0299840:CDS | 40.0% |
| AAATGCCTTATAACCCGGAT+AGG | + | chr2_3:55085228-55085247 | Msa0299840:CDS | 40.0% | |
| TGTGTGGAAGTTGCAATCAA+AGG | + | chr2_3:55085261-55085280 | Msa0299840:CDS | 40.0% | |
| TGACTAAAAGGTCCTTGGTT+AGG | + | chr2_3:55085959-55085978 | Msa0299840:intron | 40.0% | |
| AAAGTGAACGACCTAGTGTT+AGG | + | chr2_3:55086026-55086045 | Msa0299840:intron | 40.0% | |
| AAGTGAACGACCTAGTGTTA+GGG | + | chr2_3:55086027-55086046 | Msa0299840:intron | 40.0% | |
| TTGACCTACATAGCATATCG+CGG | - | chr2_3:55086131-55086150 | None:intergenic | 40.0% | |
| CGATATGCTATGTAGGTCAA+AGG | + | chr2_3:55086131-55086150 | Msa0299840:intron | 40.0% | |
| ATAGCGGCATTATAGTACTG+TGG | + | chr2_3:55086171-55086190 | Msa0299840:intron | 40.0% | |
| GTGTTGTCGAATGCAAATTG+CGG | - | chr2_3:55086227-55086246 | None:intergenic | 40.0% | |
| TGATGCAGAGACAGAGTTAT+TGG | - | chr2_3:55086270-55086289 | None:intergenic | 40.0% | |
| !! | CAAATGAAGTCATCGACTCA+AGG | - | chr2_3:55086371-55086390 | None:intergenic | 40.0% |
| GACTATGGTAAATACCCATG+AGG | + | chr2_3:55086421-55086440 | Msa0299840:intron | 40.0% | |
| !! | AGACCTATGTAGTTGATGAC+AGG | + | chr2_3:55086618-55086637 | Msa0299840:intron | 40.0% |
| CTACCTGTCATCAACTACAT+AGG | - | chr2_3:55086624-55086643 | None:intergenic | 40.0% | |
| TAGTCATCTGCAAAGTTTGG+TGG | - | chr2_3:55086958-55086977 | None:intergenic | 40.0% | |
| CTGCTTGAAAACCTTTAGTG+GGG | + | chr2_3:55086994-55087013 | Msa0299840:intron | 40.0% | |
| !! | ATTAACCTTGTGGTTGGTAG+GGG | - | chr2_3:55087031-55087050 | None:intergenic | 40.0% |
| CGTCTTCAGCAAAGATTAAC+AGG | + | chr2_3:55087213-55087232 | Msa0299840:intron | 40.0% | |
| CCAGCTATTCACTCATCAAA+GGG | - | chr2_3:55087717-55087736 | None:intergenic | 40.0% | |
| TCCAGCTATTCACTCATCAA+AGG | - | chr2_3:55087718-55087737 | None:intergenic | 40.0% | |
| ! | AGGGTAAGGTATTTATCTGC+TGG | - | chr2_3:55087782-55087801 | None:intergenic | 40.0% |
| TCACAAATTCAGAGAGGGTA+AGG | - | chr2_3:55087796-55087815 | None:intergenic | 40.0% | |
| ACGAGTATGTTGTGTGGTTT+GGG | - | chr2_3:55088049-55088068 | None:intergenic | 40.0% | |
| AACGAGTATGTTGTGTGGTT+TGG | - | chr2_3:55088050-55088069 | None:intergenic | 40.0% | |
| !! | GCGCATTCTGTTTCTGAGAA+AGG | - | chr2_3:55084243-55084262 | None:intergenic | 45.0% |
| ATAATGGCGACAACAAGGCA+AGG | + | chr2_3:55084281-55084300 | Msa0299840:CDS | 45.0% | |
| TAATGGCGACAACAAGGCAA+GGG | + | chr2_3:55084282-55084301 | Msa0299840:CDS | 45.0% | |
| ATTACCTCTAACGACCGTGT+TGG | - | chr2_3:55084336-55084355 | None:intergenic | 45.0% | |
| ! | GTAAGGAGAGAAGGGTTTTG+AGG | - | chr2_3:55084360-55084379 | None:intergenic | 45.0% |
| ! | AGGAAGGTGTAAGGAGAGAA+GGG | - | chr2_3:55084368-55084387 | None:intergenic | 45.0% |
| ACTTCACTCGATTCCGCAAA+AGG | - | chr2_3:55084416-55084435 | None:intergenic | 45.0% | |
| CTGCCATAACAGCGATATTG+CGG | - | chr2_3:55084489-55084508 | None:intergenic | 45.0% | |
| !!! | TGTTAGGGTTTTGGGGTAGT+TGG | - | chr2_3:55084585-55084604 | None:intergenic | 45.0% |
| ! | CCACAGTTGTTAGGGTTTTG+GGG | - | chr2_3:55084592-55084611 | None:intergenic | 45.0% |
| ! | CTCCACAGTTGTTAGGGTTT+TGG | - | chr2_3:55084594-55084613 | None:intergenic | 45.0% |
| ! | CAGTTTGCTCCACAGTTGTT+AGG | - | chr2_3:55084601-55084620 | None:intergenic | 45.0% |
| ! | TGTGTTTTGCTACGCCATAC+TGG | + | chr2_3:55084772-55084791 | Msa0299840:CDS | 45.0% |
| !! | TTGGTTTGTTCCTGCCAGTA+TGG | - | chr2_3:55084789-55084808 | None:intergenic | 45.0% |
| !! | TTTTCCACACGGGCTATGAT+TGG | - | chr2_3:55084808-55084827 | None:intergenic | 45.0% |
| ! | CTGCTCAATCTTTTCCACAC+GGG | - | chr2_3:55084818-55084837 | None:intergenic | 45.0% |
| ! | CCTGCTCAATCTTTTCCACA+CGG | - | chr2_3:55084819-55084838 | None:intergenic | 45.0% |
| ! | GAAGGACGCGTATGTTTTCA+TGG | + | chr2_3:55084898-55084917 | Msa0299840:CDS | 45.0% |
| ACTTACACTTCAACGCGTTC+AGG | - | chr2_3:55085090-55085109 | None:intergenic | 45.0% | |
| ACAGCACCATTAACCTATCC+GGG | - | chr2_3:55085244-55085263 | None:intergenic | 45.0% | |
| CACAGCACCATTAACCTATC+CGG | - | chr2_3:55085245-55085264 | None:intergenic | 45.0% | |
| !! | GATAGGTTAATGGTGCTGTG+TGG | + | chr2_3:55085245-55085264 | Msa0299840:CDS | 45.0% |
| AGGTACCATCCTAAATGCGT+GGG | + | chr2_3:55085470-55085489 | Msa0299840:intron | 45.0% | |
| ACCACAACTAGCTGCTCAAA+GGG | - | chr2_3:55085637-55085656 | None:intergenic | 45.0% | |
| AACCACAACTAGCTGCTCAA+AGG | - | chr2_3:55085638-55085657 | None:intergenic | 45.0% | |
| TTTGAGCAGCTAGTTGTGGT+TGG | + | chr2_3:55085637-55085656 | Msa0299840:intron | 45.0% | |
| ! | CAATGAGCTAGTCTGCATAC+TGG | + | chr2_3:55085660-55085679 | Msa0299840:intron | 45.0% |
| AGTCTGCATACTGGATACCA+TGG | + | chr2_3:55085669-55085688 | Msa0299840:intron | 45.0% | |
| GAAACAGTAGGCAACTTCCA+TGG | - | chr2_3:55085689-55085708 | None:intergenic | 45.0% | |
| GAGTCTGACTAAAAGGTCCT+TGG | + | chr2_3:55085954-55085973 | Msa0299840:intron | 45.0% | |
| AATCAATCCACGCCTAACCA+AGG | - | chr2_3:55085974-55085993 | None:intergenic | 45.0% | |
| TATCGCGGAACAATAGCGAT+TGG | - | chr2_3:55086116-55086135 | None:intergenic | 45.0% | |
| TGTTCCGCGATATGCTATGT+AGG | + | chr2_3:55086124-55086143 | Msa0299840:intron | 45.0% | |
| AAAGAAGTGAGAGCCCTCAT+GGG | - | chr2_3:55086438-55086457 | None:intergenic | 45.0% | |
| AAAAGAAGTGAGAGCCCTCA+TGG | - | chr2_3:55086439-55086458 | None:intergenic | 45.0% | |
| ! | ATGAGGGCTCTCACTTCTTT+TGG | + | chr2_3:55086438-55086457 | Msa0299840:intron | 45.0% |
| GGCAGAACGTCAAAATGCTA+TGG | + | chr2_3:55086655-55086674 | Msa0299840:intron | 45.0% | |
| GATGCTTCGCACCAATAACA+TGG | - | chr2_3:55086936-55086955 | None:intergenic | 45.0% | |
| TGACAAAACTAGTGACCAGG+AGG | + | chr2_3:55087544-55087563 | Msa0299840:intron | 45.0% | |
| CCCTTTGATGAGTGAATAGC+TGG | + | chr2_3:55087714-55087733 | Msa0299840:intron | 45.0% | |
| TAGCTCTTGCCCTTTCTCAT+CGG | + | chr2_3:55087965-55087984 | Msa0299840:CDS | 45.0% | |
| TGCCTTCCAGAAACAGCTTA+TGG | + | chr2_3:55087990-55088009 | Msa0299840:CDS | 45.0% | |
| ! | TGTGTGGTTTGGGTCACATT+TGG | - | chr2_3:55088039-55088058 | None:intergenic | 45.0% |
| ! | CAGATACTGACTGAGGTAGT+TGG | - | chr2_3:55088114-55088133 | None:intergenic | 45.0% |
| CGACAACAAGGCAAGGGAAA+AGG | + | chr2_3:55084288-55084307 | Msa0299840:CDS | 50.0% | |
| ! | CAGGAAGGTGTAAGGAGAGA+AGG | - | chr2_3:55084369-55084388 | None:intergenic | 50.0% |
| CGATATTGCGGCTGCAATTG+TGG | - | chr2_3:55084477-55084496 | None:intergenic | 50.0% | |
| CAGCCGCAATATCGCTGTTA+TGG | + | chr2_3:55084483-55084502 | Msa0299840:intron | 50.0% | |
| CCCCAAAACCCTAACAACTG+TGG | + | chr2_3:55084589-55084608 | Msa0299840:intron | 50.0% | |
| GACACACATTGCGGTCATTG+TGG | - | chr2_3:55084648-55084667 | None:intergenic | 50.0% | |
| ! | TTTTGCTACGCCATACTGGC+AGG | + | chr2_3:55084776-55084795 | Msa0299840:CDS | 50.0% |
| CAAACCAATCATAGCCCGTG+TGG | + | chr2_3:55084801-55084820 | Msa0299840:CDS | 50.0% | |
| CCGTGTGGAAAAGATTGAGC+AGG | + | chr2_3:55084816-55084835 | Msa0299840:CDS | 50.0% | |
| CGACCTGAGGAAACCATTGA+AGG | + | chr2_3:55084880-55084899 | Msa0299840:CDS | 50.0% | |
| CGTCCTTCAATGGTTTCCTC+AGG | - | chr2_3:55084886-55084905 | None:intergenic | 50.0% | |
| CAGGTACCATCCTAAATGCG+TGG | + | chr2_3:55085469-55085488 | Msa0299840:intron | 50.0% | |
| ! | AAAGGCATGCCCACGCATTT+AGG | - | chr2_3:55085482-55085501 | None:intergenic | 50.0% |
| ACCCTTTGAGCAGCTAGTTG+TGG | + | chr2_3:55085633-55085652 | Msa0299840:intron | 50.0% | |
| AAAAGGTCCTTGGTTAGGCG+TGG | + | chr2_3:55085964-55085983 | Msa0299840:intron | 50.0% | |
| ! | AAAGCTCTAGCTATGGCGTC+TGG | + | chr2_3:55086306-55086325 | Msa0299840:intron | 50.0% |
| TGACAGGTAGCAGAGTGTAG+TGG | + | chr2_3:55086634-55086653 | Msa0299840:intron | 50.0% | |
| AAACCTTTAGTGGGGTCTCC+CGG | + | chr2_3:55087002-55087021 | Msa0299840:intron | 50.0% | |
| CAAAACTAGTGACCAGGAGG+AGG | + | chr2_3:55087547-55087566 | Msa0299840:intron | 50.0% | |
| !! | GTTTTGAATCTGCCTCCTCC+TGG | - | chr2_3:55087562-55087581 | None:intergenic | 50.0% |
| TTCTCTCGACAAACACCAGC+CGG | + | chr2_3:55087586-55087605 | Msa0299840:intron | 50.0% | |
| AGATATCACATGCTTCCGGC+TGG | - | chr2_3:55087604-55087623 | None:intergenic | 50.0% | |
| ! | GAGCTAGCTGCTGGTTATGT+GGG | - | chr2_3:55087951-55087970 | None:intergenic | 50.0% |
| ! | AGAGCTAGCTGCTGGTTATG+TGG | - | chr2_3:55087952-55087971 | None:intergenic | 50.0% |
| AGCTCTTGCCCTTTCTCATC+GGG | + | chr2_3:55087966-55087985 | Msa0299840:CDS | 50.0% | |
| GAAGGCAACCCGATGAGAAA+GGG | - | chr2_3:55087977-55087996 | None:intergenic | 50.0% | |
| !! | GGCCATAAGCTGTTTCTGGA+AGG | - | chr2_3:55087995-55088014 | None:intergenic | 50.0% |
| ! | AAGGGGCCATAAGCTGTTTC+TGG | - | chr2_3:55087999-55088018 | None:intergenic | 50.0% |
| TGCTGGAGCATGAGATGAAG+GGG | - | chr2_3:55088016-55088035 | None:intergenic | 50.0% | |
| GTGCTGGAGCATGAGATGAA+GGG | - | chr2_3:55088017-55088036 | None:intergenic | 50.0% | |
| !! | GTTTGGGTCACATTTGGTGC+TGG | - | chr2_3:55088033-55088052 | None:intergenic | 50.0% |
| GACTGAGGTAGTTGGACCAT+TGG | - | chr2_3:55088106-55088125 | None:intergenic | 50.0% | |
| !! | CACAATCGGAGGCACCAACA+CGG | + | chr2_3:55084319-55084338 | Msa0299840:CDS | 55.0% |
| TGCGGCTGCAATTGTGGTTG+CGG | - | chr2_3:55084471-55084490 | None:intergenic | 55.0% | |
| !!! | GGGTTTTGGGGTAGTTGGTG+TGG | - | chr2_3:55084580-55084599 | None:intergenic | 55.0% |
| GGATGCTGCGACACACATTG+CGG | - | chr2_3:55084657-55084676 | None:intergenic | 55.0% | |
| GCATGCCCACGCATTTAGGA+TGG | - | chr2_3:55085478-55085497 | None:intergenic | 55.0% | |
| !! | TTGTGGTTGGTAGGGGAGAC+CGG | - | chr2_3:55087024-55087043 | None:intergenic | 55.0% |
| AAAGGGCAAGAGCTAGCTGC+TGG | - | chr2_3:55087960-55087979 | None:intergenic | 55.0% | |
| GGAAGGCAACCCGATGAGAA+AGG | - | chr2_3:55087978-55087997 | None:intergenic | 55.0% | |
| ! | GGTGCTGGAGCATGAGATGA+AGG | - | chr2_3:55088018-55088037 | None:intergenic | 55.0% |
| TCTTCACCCAACCTCGCCAA+TGG | + | chr2_3:55088087-55088106 | Msa0299840:CDS | 55.0% | |
| GTTGGACCATTGGCGAGGTT+GGG | - | chr2_3:55088096-55088115 | None:intergenic | 55.0% | |
| AGTTGGACCATTGGCGAGGT+TGG | - | chr2_3:55088097-55088116 | None:intergenic | 55.0% | |
| AGGTAGTTGGACCATTGGCG+AGG | - | chr2_3:55088101-55088120 | None:intergenic | 55.0% | |
| GGCACCAACACGGTCGTTAG+AGG | + | chr2_3:55084329-55084348 | Msa0299840:CDS | 60.0% | |
| GCGGCTGCAATTGTGGTTGC+GGG | - | chr2_3:55084470-55084489 | None:intergenic | 60.0% | |
| GCTATGGCGTCTGGACCATC+TGG | + | chr2_3:55086315-55086334 | Msa0299840:intron | 60.0% | |
| AGACCGGGAGACCCCACTAA+AGG | - | chr2_3:55087008-55087027 | None:intergenic | 60.0% | |
| !! | TGTGGTTGGTAGGGGAGACC+GGG | - | chr2_3:55087023-55087042 | None:intergenic | 60.0% |
| GGTCTCCCCTACCAACCACA+AGG | + | chr2_3:55087023-55087042 | Msa0299840:intron | 60.0% | |
| GCGAGGTTGGGTGAAGATGC+GGG | - | chr2_3:55088084-55088103 | None:intergenic | 60.0% | |
| GGCGAGGTTGGGTGAAGATG+CGG | - | chr2_3:55088085-55088104 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55084068 | 55088134 | 55084068 | ID=Msa0299840;Name=Msa0299840 |
| chr2_3 | mRNA | 55084068 | 55088134 | 55084068 | ID=Msa0299840-mRNA-1;Parent=Msa0299840;Name=Msa0299840-mRNA-1;_AED=0.42;_eAED=0.42;_QI=189|0.75|0.6|1|1|1|5|0|282 |
| chr2_3 | exon | 55084068 | 55084350 | 55084068 | ID=Msa0299840-mRNA-1:exon:17601;Parent=Msa0299840-mRNA-1 |
| chr2_3 | exon | 55084764 | 55085103 | 55084764 | ID=Msa0299840-mRNA-1:exon:17602;Parent=Msa0299840-mRNA-1 |
| chr2_3 | exon | 55085214 | 55085282 | 55085214 | ID=Msa0299840-mRNA-1:exon:17603;Parent=Msa0299840-mRNA-1 |
| chr2_3 | exon | 55085472 | 55085548 | 55085472 | ID=Msa0299840-mRNA-1:exon:17604;Parent=Msa0299840-mRNA-1 |
| chr2_3 | exon | 55087866 | 55088134 | 55087866 | ID=Msa0299840-mRNA-1:exon:17605;Parent=Msa0299840-mRNA-1 |
| chr2_3 | five_prime_UTR | 55084068 | 55084256 | 55084068 | ID=Msa0299840-mRNA-1:five_prime_utr;Parent=Msa0299840-mRNA-1 |
| chr2_3 | CDS | 55084257 | 55084350 | 55084257 | ID=Msa0299840-mRNA-1:cds;Parent=Msa0299840-mRNA-1 |
| chr2_3 | CDS | 55084764 | 55085103 | 55084764 | ID=Msa0299840-mRNA-1:cds;Parent=Msa0299840-mRNA-1 |
| chr2_3 | CDS | 55085214 | 55085282 | 55085214 | ID=Msa0299840-mRNA-1:cds;Parent=Msa0299840-mRNA-1 |
| chr2_3 | CDS | 55085472 | 55085548 | 55085472 | ID=Msa0299840-mRNA-1:cds;Parent=Msa0299840-mRNA-1 |
| chr2_3 | CDS | 55087866 | 55088134 | 55087866 | ID=Msa0299840-mRNA-1:cds;Parent=Msa0299840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
