Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299950 | XP_039687055.1 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 6.33e-136 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299950 | sp|F4JIJ7|BH162_ARATH | 38.547 | 179 | 96 | 5 | 13 | 180 | 11 | 186 | 4.31e-30 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299950 | A0A072VCG2 | 88.182 | 220 | 22 | 2 | 1 | 217 | 1 | 219 | 3.03e-136 | 390 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0299950 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299950 | MtrunA17_Chr2g0324511 | 85.276 | 163 | 21 | 1 | 1 | 160 | 1 | 163 | 3.29e-96 | 277 |
| Msa0299950 | MtrunA17_Chr4g0040201 | 64.179 | 201 | 57 | 5 | 9 | 201 | 8 | 201 | 1.86e-84 | 249 |
| Msa0299950 | MtrunA17_Chr2g0324571 | 85.593 | 118 | 13 | 2 | 46 | 160 | 2 | 118 | 1.80e-66 | 201 |
| Msa0299950 | MtrunA17_Chr2g0324521 | 82.609 | 115 | 20 | 0 | 46 | 160 | 2 | 116 | 3.63e-65 | 197 |
| Msa0299950 | MtrunA17_Chr2g0282341 | 37.037 | 135 | 79 | 2 | 49 | 181 | 4 | 134 | 1.40e-27 | 102 |
| Msa0299950 | MtrunA17_Chr2g0324531 | 74.576 | 59 | 15 | 0 | 159 | 217 | 2 | 60 | 8.55e-26 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299950 | AT4G20970.1 | 38.547 | 179 | 96 | 5 | 13 | 180 | 11 | 186 | 4.39e-31 | 113 |
| Msa0299950 | AT1G10585.1 | 29.050 | 179 | 117 | 4 | 7 | 184 | 8 | 177 | 4.46e-15 | 70.9 |
| Msa0299950 | AT1G10586.1 | 25.824 | 182 | 124 | 5 | 1 | 180 | 1 | 173 | 1.44e-11 | 61.2 |
Find 47 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGGGATCTTGAAAT+TGG | 0.192948 | 2_3:+55248878 | Msa0299950:CDS |
| TTTCAATCTCTCGCCTATTT+TGG | 0.215651 | 2_3:-55248813 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_3:+55247104 | Msa0299950:CDS |
| TGGAAACACAACCTCAATTC+TGG | 0.245971 | 2_3:+55248864 | Msa0299950:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.260572 | 2_3:+55246949 | Msa0299950:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_3:+55246906 | Msa0299950:CDS |
| CCGCAATCTTTGTTACGATT+TGG | 0.283657 | 2_3:+55248785 | Msa0299950:CDS |
| TCTATTCTTCATCAAGGATT+AGG | 0.288350 | 2_3:-55248947 | None:intergenic |
| ATCACCTTTGGATCATAGTT+AGG | 0.324173 | 2_3:-55246425 | None:intergenic |
| GAAGAATAGATTAAAGTATC+TGG | 0.341952 | 2_3:+55248960 | Msa0299950:three_prime_UTR |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_3:-55246397 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_3:+55246907 | Msa0299950:CDS |
| CGATTTGGAGAAACCAAAAT+AGG | 0.365801 | 2_3:+55248800 | Msa0299950:CDS |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_3:-55246385 | None:intergenic |
| ATTGCCTCATCTACTTGATC+AGG | 0.400525 | 2_3:-55246841 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_3:+55247108 | Msa0299950:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_3:+55248891 | Msa0299950:CDS |
| TAACTTCACAGAAAATAAAA+TGG | 0.408004 | 2_3:-55247050 | None:intergenic |
| AACGATCTTTCTTTCTACTT+TGG | 0.409199 | 2_3:-55246345 | None:intergenic |
| CAAACATTATATTTGTCTCT+AGG | 0.410779 | 2_3:-55246879 | None:intergenic |
| CGAGAGATTGAAAGCATTTG+TGG | 0.420058 | 2_3:+55248823 | Msa0299950:CDS |
| CTTTAATCTATTCTTCATCA+AGG | 0.435959 | 2_3:-55248953 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_3:+55246988 | Msa0299950:CDS |
| TCTACTTTGGTTGAAGAAGA+AGG | 0.464564 | 2_3:-55246332 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_3:+55248892 | Msa0299950:CDS |
| TCACCTTTGGATCATAGTTA+GGG | 0.469862 | 2_3:-55246424 | None:intergenic |
| ATTTCAAGATCCCAGAATTG+AGG | 0.481933 | 2_3:-55248875 | None:intergenic |
| TCAAGGATTAGGTAAACTCT+TGG | 0.489378 | 2_3:-55248936 | None:intergenic |
| GGAAACACAACCTCAATTCT+GGG | 0.497186 | 2_3:+55248865 | Msa0299950:CDS |
| TCATCTACTTGATCAGGTAA+TGG | 0.516045 | 2_3:-55246835 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_3:+55247140 | Msa0299950:CDS |
| TTGTGTTTCCACATTGCTCA+CGG | 0.538142 | 2_3:-55248852 | None:intergenic |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_3:-55247148 | None:intergenic |
| TACAAGTCATTGTAACATGT+GGG | 0.544345 | 2_3:+55247019 | Msa0299950:CDS |
| AGATTGAAAGCATTTGTGGA+AGG | 0.584279 | 2_3:+55248827 | Msa0299950:CDS |
| CTACAAGTCATTGTAACATG+TGG | 0.589705 | 2_3:+55247018 | Msa0299950:CDS |
| TCTCCCTAACTATGATCCAA+AGG | 0.591025 | 2_3:+55246421 | Msa0299950:CDS |
| CCAAATCGTAACAAAGATTG+CGG | 0.605051 | 2_3:-55248785 | None:intergenic |
| AATAAGAGATCACGTGATGG+TGG | 0.625950 | 2_3:+55246931 | Msa0299950:CDS |
| TGTTACAATGACTTGTAGAG+TGG | 0.628096 | 2_3:-55247013 | None:intergenic |
| ATTACCTGATCAAGTAGATG+AGG | 0.635272 | 2_3:+55246837 | Msa0299950:CDS |
| GGAAATAAGAGATCACGTGA+TGG | 0.672227 | 2_3:+55246928 | Msa0299950:CDS |
| ACAAGTCATTGTAACATGTG+GGG | 0.680252 | 2_3:+55247020 | Msa0299950:CDS |
| TAAATGGATCAAAATCAACA+AGG | 0.698469 | 2_3:+55246302 | None:intergenic |
| ATGGATCAAAATCAACAAGG+AGG | 0.707629 | 2_3:+55246305 | Msa0299950:CDS |
| ACTGCATGAAGAAAACGTCG+AGG | 0.726422 | 2_3:+55247080 | Msa0299950:CDS |
| GGAAGGATCCGTGAGCAATG+TGG | 0.734055 | 2_3:+55248844 | Msa0299950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTATAAGCTA+AGG | + | chr2_3:55246452-55246471 | Msa0299950:intron | 10.0% |
| !!! | TATTTTATTTTATAAGCTAA+GGG | + | chr2_3:55246453-55246472 | Msa0299950:intron | 10.0% |
| !!! | TTATTGCAATAAATTTTATA+CGG | - | chr2_3:55247693-55247712 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAAATCACCTT+TGG | - | chr2_3:55246440-55246459 | None:intergenic | 15.0% |
| !!! | CGATTTTTTTTTTTTTTTAC+AGG | - | chr2_3:55246550-55246569 | None:intergenic | 15.0% |
| !! | TGTTAATTAATTAAAAGAAG+AGG | - | chr2_3:55246729-55246748 | None:intergenic | 15.0% |
| !! | TTGAATAACACATATTAATT+TGG | + | chr2_3:55246778-55246797 | Msa0299950:intron | 15.0% |
| !!! | TTATCAATTGTTTCTATTTT+AGG | + | chr2_3:55247431-55247450 | Msa0299950:intron | 15.0% |
| !!! | TATCAATTGTTTCTATTTTA+GGG | + | chr2_3:55247432-55247451 | Msa0299950:intron | 15.0% |
| !!! | TTGTTATTGCAATAAATTTT+AGG | - | chr2_3:55247636-55247655 | None:intergenic | 15.0% |
| !! | TTCTTGTCAAAAAAAAAAAA+AGG | + | chr2_3:55248125-55248144 | Msa0299950:intron | 15.0% |
| !! | AAAAAAAAAATGTTAGATCA+TGG | - | chr2_3:55248311-55248330 | None:intergenic | 15.0% |
| !! | AAATCCAAAAACTTAAAAAA+TGG | + | chr2_3:55248429-55248448 | Msa0299950:intron | 15.0% |
| !!! | ATTTCCATTTTTTAAGTTTT+TGG | - | chr2_3:55248436-55248455 | None:intergenic | 15.0% |
| !!! | TTTTGTAAACACCTTTTATT+TGG | - | chr2_3:55246659-55246678 | None:intergenic | 20.0% |
| !!! | TGTAAAACCATTTTTCATAT+AGG | + | chr2_3:55246699-55246718 | Msa0299950:intron | 20.0% |
| !!! | TGTTATTTTTCATTTAATGC+AGG | + | chr2_3:55246801-55246820 | Msa0299950:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | - | chr2_3:55246988-55247007 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | + | chr2_3:55246987-55247006 | Msa0299950:CDS | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | + | chr2_3:55246988-55247007 | Msa0299950:CDS | 20.0% |
| !! | TAACTTCACAGAAAATAAAA+TGG | - | chr2_3:55247053-55247072 | None:intergenic | 20.0% |
| !! | TATATATATACATACACACA+TGG | + | chr2_3:55247163-55247182 | Msa0299950:intron | 20.0% |
| !!! | TTATTGCAATAAATTTTAGG+AGG | - | chr2_3:55247633-55247652 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAAATTTAGTGT+AGG | + | chr2_3:55247910-55247929 | Msa0299950:intron | 20.0% |
| !! | TATTTCTTAACTTATGTCTA+AGG | + | chr2_3:55248188-55248207 | Msa0299950:intron | 20.0% |
| !! | AATGACATGTCATAAAAAAT+GGG | - | chr2_3:55248230-55248249 | None:intergenic | 20.0% |
| !! | AAATGACATGTCATAAAAAA+TGG | - | chr2_3:55248231-55248250 | None:intergenic | 20.0% |
| ! | GAATATACATATGAATGTGA+TGG | - | chr2_3:55246494-55246513 | None:intergenic | 25.0% |
| ! | TTCATATGTATATTCATGTG+AGG | + | chr2_3:55246499-55246518 | Msa0299950:intron | 25.0% |
| ! | GTTTAACGTTTCCAAATAAA+AGG | + | chr2_3:55246645-55246664 | Msa0299950:intron | 25.0% |
| ! | CAAACATTATATTTGTCTCT+AGG | - | chr2_3:55246882-55246901 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | + | chr2_3:55246906-55246925 | Msa0299950:CDS | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | + | chr2_3:55246907-55246926 | Msa0299950:CDS | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | + | chr2_3:55247104-55247123 | Msa0299950:CDS | 25.0% |
| ! | TACATATCACTATTGTTCTT+TGG | + | chr2_3:55247290-55247309 | Msa0299950:intron | 25.0% |
| ! | ACATATCACTATTGTTCTTT+GGG | + | chr2_3:55247291-55247310 | Msa0299950:intron | 25.0% |
| ! | ATCTAGTTACTTATATAGAG+AGG | - | chr2_3:55247557-55247576 | None:intergenic | 25.0% |
| !!! | AATTTTAGGAGGAAAAAATC+AGG | - | chr2_3:55247622-55247641 | None:intergenic | 25.0% |
| !! | AATAAATTTTATACGGTAGC+AGG | - | chr2_3:55247686-55247705 | None:intergenic | 25.0% |
| ! | CGATTTAATCTCATATATGA+TGG | - | chr2_3:55247789-55247808 | None:intergenic | 25.0% |
| !! | GTTAGTATGTGTTTTTCTAA+AGG | - | chr2_3:55248003-55248022 | None:intergenic | 25.0% |
| ! | AAATGTTAGATCATGGTTTA+TGG | - | chr2_3:55248304-55248323 | None:intergenic | 25.0% |
| !! | GTCTTAACAATATTTTGTGA+AGG | + | chr2_3:55248682-55248701 | Msa0299950:intron | 25.0% |
| ! | CTTTAATCTATTCTTCATCA+AGG | - | chr2_3:55248956-55248975 | None:intergenic | 25.0% |
| AACGATCTTTCTTTCTACTT+TGG | - | chr2_3:55246348-55246367 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | - | chr2_3:55246388-55246407 | None:intergenic | 30.0% | |
| AGGTGAACCTATATGAAAAA+TGG | - | chr2_3:55246709-55246728 | None:intergenic | 30.0% | |
| TTAACACTATAAGCTCTTCT+TGG | + | chr2_3:55246754-55246773 | Msa0299950:intron | 30.0% | |
| TACAAGTCATTGTAACATGT+GGG | + | chr2_3:55247019-55247038 | Msa0299950:CDS | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | - | chr2_3:55247151-55247170 | None:intergenic | 30.0% | |
| TAATTGCAGTTCCTTCAATA+CGG | + | chr2_3:55247657-55247676 | Msa0299950:intron | 30.0% | |
| TAACAAATAACCTCCATGAA+AGG | + | chr2_3:55247710-55247729 | Msa0299950:intron | 30.0% | |
| AACAAATAACCTCCATGAAA+GGG | + | chr2_3:55247711-55247730 | Msa0299950:intron | 30.0% | |
| ! | TTGATGATAGATGCTAATGA+TGG | - | chr2_3:55247856-55247875 | None:intergenic | 30.0% |
| TCTATTCTTCATCAAGGATT+AGG | - | chr2_3:55248950-55248969 | None:intergenic | 30.0% | |
| ATGGATCAAAATCAACAAGG+AGG | + | chr2_3:55246305-55246324 | Msa0299950:CDS | 35.0% | |
| TCTACTTTGGTTGAAGAAGA+AGG | - | chr2_3:55246335-55246354 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | - | chr2_3:55246400-55246419 | None:intergenic | 35.0% | |
| TCACCTTTGGATCATAGTTA+GGG | - | chr2_3:55246427-55246446 | None:intergenic | 35.0% | |
| ATCACCTTTGGATCATAGTT+AGG | - | chr2_3:55246428-55246447 | None:intergenic | 35.0% | |
| CCAATCTCAAAGAAAACTCA+AGG | - | chr2_3:55246574-55246593 | None:intergenic | 35.0% | |
| !!! | CCTTGAGTTTTCTTTGAGAT+TGG | + | chr2_3:55246571-55246590 | Msa0299950:intron | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | - | chr2_3:55246838-55246857 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | + | chr2_3:55246837-55246856 | Msa0299950:CDS | 35.0% | |
| ! | TGTTACAATGACTTGTAGAG+TGG | - | chr2_3:55247016-55247035 | None:intergenic | 35.0% |
| CTACAAGTCATTGTAACATG+TGG | + | chr2_3:55247018-55247037 | Msa0299950:CDS | 35.0% | |
| ACAAGTCATTGTAACATGTG+GGG | + | chr2_3:55247020-55247039 | Msa0299950:CDS | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | + | chr2_3:55247108-55247127 | Msa0299950:CDS | 35.0% | |
| AGCCAGAAAACTTGAATAGT+GGG | + | chr2_3:55247207-55247226 | Msa0299950:intron | 35.0% | |
| TGGCAAATCCTAAAGAACTA+GGG | - | chr2_3:55247473-55247492 | None:intergenic | 35.0% | |
| ATGGCAAATCCTAAAGAACT+AGG | - | chr2_3:55247474-55247493 | None:intergenic | 35.0% | |
| !! | TGTTTTTCTAAAGGTTTGCG+CGG | - | chr2_3:55247994-55248013 | None:intergenic | 35.0% |
| TATATTCCGAACTGAGTTCT+AGG | + | chr2_3:55248395-55248414 | Msa0299950:intron | 35.0% | |
| ATATTCCGAACTGAGTTCTA+GGG | + | chr2_3:55248396-55248415 | Msa0299950:intron | 35.0% | |
| CCAAATCGTAACAAAGATTG+CGG | - | chr2_3:55248788-55248807 | None:intergenic | 35.0% | |
| ! | CGATTTGGAGAAACCAAAAT+AGG | + | chr2_3:55248800-55248819 | Msa0299950:CDS | 35.0% |
| ! | TTTCAATCTCTCGCCTATTT+TGG | - | chr2_3:55248816-55248835 | None:intergenic | 35.0% |
| !! | AGATTGAAAGCATTTGTGGA+AGG | + | chr2_3:55248827-55248846 | Msa0299950:CDS | 35.0% |
| ATTTCAAGATCCCAGAATTG+AGG | - | chr2_3:55248878-55248897 | None:intergenic | 35.0% | |
| !! | CAATTCTGGGATCTTGAAAT+TGG | + | chr2_3:55248878-55248897 | Msa0299950:CDS | 35.0% |
| TTGAAATTGGAAGTGAGAGT+TGG | + | chr2_3:55248891-55248910 | Msa0299950:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | + | chr2_3:55248892-55248911 | Msa0299950:CDS | 35.0% | |
| TCAAGGATTAGGTAAACTCT+TGG | - | chr2_3:55248939-55248958 | None:intergenic | 35.0% | |
| TCTCCCTAACTATGATCCAA+AGG | + | chr2_3:55246421-55246440 | Msa0299950:CDS | 40.0% | |
| ATTGCCTCATCTACTTGATC+AGG | - | chr2_3:55246844-55246863 | None:intergenic | 40.0% | |
| GGAAATAAGAGATCACGTGA+TGG | + | chr2_3:55246928-55246947 | Msa0299950:CDS | 40.0% | |
| AATAAGAGATCACGTGATGG+TGG | + | chr2_3:55246931-55246950 | Msa0299950:CDS | 40.0% | |
| GAGCCAGAAAACTTGAATAG+TGG | + | chr2_3:55247206-55247225 | Msa0299950:intron | 40.0% | |
| GCCAGAAAACTTGAATAGTG+GGG | + | chr2_3:55247208-55247227 | Msa0299950:intron | 40.0% | |
| !! | TCCCCACTATTCAAGTTTTC+TGG | - | chr2_3:55247212-55247231 | None:intergenic | 40.0% |
| ! | GTTCTTTGGGAAATGCTAAC+AGG | + | chr2_3:55247304-55247323 | Msa0299950:intron | 40.0% |
| AAATGCTAACAGGTGCTCTT+AGG | + | chr2_3:55247314-55247333 | Msa0299950:intron | 40.0% | |
| AATGCTAACAGGTGCTCTTA+GGG | + | chr2_3:55247315-55247334 | Msa0299950:intron | 40.0% | |
| ! | TAGCAAGACCCTAGTTCTTT+AGG | + | chr2_3:55247462-55247481 | Msa0299950:intron | 40.0% |
| GTATGTTGCAAACCCTTTCA+TGG | - | chr2_3:55247726-55247745 | None:intergenic | 40.0% | |
| AACATCAACCGTACAATCAG+AGG | - | chr2_3:55247968-55247987 | None:intergenic | 40.0% | |
| ! | ACATACTAACTTGTGCCCTA+TGG | + | chr2_3:55248013-55248032 | Msa0299950:intron | 40.0% |
| ! | CATACTAACTTGTGCCCTAT+GGG | + | chr2_3:55248014-55248033 | Msa0299950:intron | 40.0% |
| ! | TATTCCGAACTGAGTTCTAG+GGG | + | chr2_3:55248397-55248416 | Msa0299950:intron | 40.0% |
| TGTGTGTGTGTGTGTATTCA+TGG | - | chr2_3:55248553-55248572 | None:intergenic | 40.0% | |
| CCGCAATCTTTGTTACGATT+TGG | + | chr2_3:55248785-55248804 | Msa0299950:CDS | 40.0% | |
| !! | CGAGAGATTGAAAGCATTTG+TGG | + | chr2_3:55248823-55248842 | Msa0299950:CDS | 40.0% |
| TTGTGTTTCCACATTGCTCA+CGG | - | chr2_3:55248855-55248874 | None:intergenic | 40.0% | |
| TGGAAACACAACCTCAATTC+TGG | + | chr2_3:55248864-55248883 | Msa0299950:CDS | 40.0% | |
| GGAAACACAACCTCAATTCT+GGG | + | chr2_3:55248865-55248884 | Msa0299950:CDS | 40.0% | |
| ACTGCATGAAGAAAACGTCG+AGG | + | chr2_3:55247080-55247099 | Msa0299950:CDS | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | + | chr2_3:55247140-55247159 | Msa0299950:CDS | 45.0% | |
| GGTCTAATTGTACGCAGTAG+CGG | + | chr2_3:55247184-55247203 | Msa0299950:intron | 45.0% | |
| TGTTGCAAACCCTTTCATGG+AGG | - | chr2_3:55247723-55247742 | None:intergenic | 45.0% | |
| ATCAACCGTACAATCAGAGG+CGG | - | chr2_3:55247965-55247984 | None:intergenic | 45.0% | |
| !! | ATTCCGAACTGAGTTCTAGG+GGG | + | chr2_3:55248398-55248417 | Msa0299950:intron | 45.0% |
| !!! | TATTTAATATTTTCAAAAAA+TGG | - | chr2_3:55247493-55247512 | None:intergenic | 5.0% |
| !! | TATTTAAATAAATACATATT+TGG | - | chr2_3:55248524-55248543 | None:intergenic | 5.0% |
| GTAGCAGGCAACCGTATTGA+AGG | - | chr2_3:55247671-55247690 | None:intergenic | 50.0% | |
| AGCCACACACAAGGTTGTGT+GGG | - | chr2_3:55247942-55247961 | None:intergenic | 50.0% | |
| AACTTGTGCCCTATGGGCTT+AGG | + | chr2_3:55248020-55248039 | Msa0299950:intron | 50.0% | |
| ACTTGTGCCCTATGGGCTTA+GGG | + | chr2_3:55248021-55248040 | Msa0299950:intron | 50.0% | |
| ACTTGTGCCCTAAGCCCATA+GGG | - | chr2_3:55248031-55248050 | None:intergenic | 50.0% | |
| CTTCCCCCTAGAACTCAGTT+CGG | - | chr2_3:55248404-55248423 | None:intergenic | 50.0% | |
| AGCCCACACAACCTTGTGTG+TGG | + | chr2_3:55247937-55247956 | Msa0299950:intron | 55.0% | |
| GAGCCACACACAAGGTTGTG+TGG | - | chr2_3:55247943-55247962 | None:intergenic | 55.0% | |
| TGGCTCCGCCTCTGATTGTA+CGG | + | chr2_3:55247957-55247976 | Msa0299950:intron | 55.0% | |
| CACTTGTGCCCTAAGCCCAT+AGG | - | chr2_3:55248032-55248051 | None:intergenic | 55.0% | |
| GGAAGGATCCGTGAGCAATG+TGG | + | chr2_3:55248844-55248863 | Msa0299950:CDS | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | + | chr2_3:55246949-55246968 | Msa0299950:CDS | 60.0% | |
| CAGAGGCGGAGCCACACACA+AGG | - | chr2_3:55247951-55247970 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55246305 | 55248982 | 55246305 | ID=Msa0299950;Name=Msa0299950 |
| chr2_3 | mRNA | 55246305 | 55248982 | 55246305 | ID=Msa0299950-mRNA-1;Parent=Msa0299950;Name=Msa0299950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|1|1|3|24|217 |
| chr2_3 | exon | 55246305 | 55246442 | 55246305 | ID=Msa0299950-mRNA-1:exon:17638;Parent=Msa0299950-mRNA-1 |
| chr2_3 | exon | 55246823 | 55247161 | 55246823 | ID=Msa0299950-mRNA-1:exon:17639;Parent=Msa0299950-mRNA-1 |
| chr2_3 | exon | 55248782 | 55248982 | 55248782 | ID=Msa0299950-mRNA-1:exon:17640;Parent=Msa0299950-mRNA-1 |
| chr2_3 | CDS | 55246305 | 55246442 | 55246305 | ID=Msa0299950-mRNA-1:cds;Parent=Msa0299950-mRNA-1 |
| chr2_3 | CDS | 55246823 | 55247161 | 55246823 | ID=Msa0299950-mRNA-1:cds;Parent=Msa0299950-mRNA-1 |
| chr2_3 | CDS | 55248782 | 55248958 | 55248782 | ID=Msa0299950-mRNA-1:cds;Parent=Msa0299950-mRNA-1 |
| chr2_3 | three_prime_UTR | 55248959 | 55248982 | 55248959 | ID=Msa0299950-mRNA-1:three_prime_utr;Parent=Msa0299950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
