Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299960 | XP_013465109.1 | 85.714 | 217 | 24 | 3 | 1 | 210 | 1 | 217 | 7.47e-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299960 | sp|F4JIJ7|BH162_ARATH | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 4.48e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299960 | A0A072VAT4 | 85.714 | 217 | 24 | 3 | 1 | 210 | 1 | 217 | 3.57e-125 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0299960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299960 | MtrunA17_Chr2g0324511 | 82.209 | 163 | 19 | 2 | 1 | 153 | 1 | 163 | 5.81e-90 | 261 |
| Msa0299960 | MtrunA17_Chr4g0040201 | 65.979 | 194 | 58 | 4 | 9 | 194 | 8 | 201 | 2.67e-83 | 246 |
| Msa0299960 | MtrunA17_Chr2g0324521 | 86.957 | 115 | 9 | 2 | 45 | 153 | 2 | 116 | 1.09e-63 | 193 |
| Msa0299960 | MtrunA17_Chr2g0324571 | 80.342 | 117 | 15 | 1 | 45 | 153 | 2 | 118 | 2.08e-62 | 190 |
| Msa0299960 | MtrunA17_Chr2g0324531 | 84.746 | 59 | 9 | 0 | 152 | 210 | 2 | 60 | 6.17e-30 | 105 |
| Msa0299960 | MtrunA17_Chr2g0282341 | 39.552 | 134 | 69 | 3 | 48 | 173 | 4 | 133 | 4.86e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299960 | AT4G20970.1 | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 4.55e-34 | 120 |
| Msa0299960 | AT1G10585.1 | 29.825 | 171 | 114 | 3 | 7 | 175 | 9 | 175 | 4.11e-15 | 70.9 |
| Msa0299960 | AT1G10586.1 | 26.471 | 170 | 119 | 3 | 7 | 174 | 9 | 174 | 4.37e-12 | 62.4 |
| Msa0299960 | AT5G51780.1 | 29.586 | 169 | 105 | 3 | 14 | 169 | 3 | 170 | 1.47e-11 | 61.2 |
| Msa0299960 | AT5G51780.2 | 29.586 | 169 | 105 | 3 | 14 | 169 | 26 | 193 | 2.07e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAATTCCAATCAATTTA+AGG | 0.084886 | 2_3:-55255446 | Msa0299960:five_prime_UTR |
| CCGCAAACTTTGTTACAATT+TGG | 0.160686 | 2_3:-55253276 | Msa0299960:CDS |
| ATGTATATGTTTCTTAATTA+AGG | 0.161924 | 2_3:+55253108 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_3:-55254002 | Msa0299960:CDS |
| CAATTGTGGGATCTTGAAAT+TGG | 0.269333 | 2_3:-55253183 | Msa0299960:CDS |
| TTAAATTGATTGGAATTTAT+AGG | 0.273082 | 2_3:+55255448 | None:intergenic |
| AACAAGAAAGAAAGTTTAAA+AGG | 0.273993 | 2_3:-55254157 | Msa0299960:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_3:-55254182 | Msa0299960:CDS |
| ATGTTTCTTAATTAAGGATT+TGG | 0.304277 | 2_3:+55253114 | None:intergenic |
| GAGAGTTGAGTTTGGAATAG+AGG | 0.319433 | 2_3:+55255299 | None:intergenic |
| ATAAATAACCTTAAATTGAT+TGG | 0.320560 | 2_3:+55255438 | None:intergenic |
| AATTCGAAGGTTTCTTTCAA+TGG | 0.323190 | 2_3:-55255407 | Msa0299960:exon |
| AGAGTTTGTGAACGGATCTA+TGG | 0.326191 | 2_3:-55253226 | Msa0299960:CDS |
| TCTTCCTAGCTATAATTCTA+AGG | 0.332366 | 2_3:-55255275 | Msa0299960:intron |
| AGGAAGAAGAGAGTTGAGTT+TGG | 0.335218 | 2_3:+55255291 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_3:-55254181 | Msa0299960:CDS |
| CCAACTTTAGATTTGTCTCT+AGG | 0.356186 | 2_3:+55254209 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_3:-55253998 | Msa0299960:CDS |
| CTTTCGACTTTGGTTGAAGA+AGG | 0.411324 | 2_3:+55255361 | None:intergenic |
| AACAGCCTTTCTTTCGACTT+TGG | 0.416457 | 2_3:+55255351 | None:intergenic |
| TATAACATTTAGTAGATAGT+TGG | 0.418579 | 2_3:+55255506 | None:intergenic |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2_3:+55254056 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_3:+55254247 | None:intergenic |
| TTGAAATTGGATCTGAGAGT+TGG | 0.440265 | 2_3:-55253170 | Msa0299960:CDS |
| CCAAATTGTAACAAAGTTTG+CGG | 0.448789 | 2_3:+55253276 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_3:-55254118 | Msa0299960:CDS |
| TGAAATTGGATCTGAGAGTT+GGG | 0.479805 | 2_3:-55253169 | Msa0299960:CDS |
| TTCAACCAAAGTCGAAAGAA+AGG | 0.497186 | 2_3:-55255356 | Msa0299960:CDS |
| CCTAGAGACAAATCTAAAGT+TGG | 0.498284 | 2_3:-55254209 | Msa0299960:CDS |
| TTAAGGATTTGGTAAACTCA+TGG | 0.514490 | 2_3:+55253125 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_3:-55253966 | Msa0299960:intron |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_3:+55254253 | None:intergenic |
| TGGAACATAATCAACAAGAA+TGG | 0.524412 | 2_3:-55255387 | Msa0299960:CDS |
| GAGTTTGTGAACGGATCTAT+GGG | 0.526348 | 2_3:-55253225 | Msa0299960:CDS |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_3:+55253958 | None:intergenic |
| TACAAGTGATTGTAACATGT+GGG | 0.544345 | 2_3:-55254087 | Msa0299960:CDS |
| GGAAACACAGTCTCAATTGT+GGG | 0.560076 | 2_3:-55253196 | Msa0299960:CDS |
| TGGAAACACAGTCTCAATTG+TGG | 0.578883 | 2_3:-55253197 | Msa0299960:CDS |
| TTCACCTTAGAATTATAGCT+AGG | 0.582785 | 2_3:+55255271 | None:intergenic |
| GAGCAATCAAAATAAGTGAG+AGG | 0.593941 | 2_3:-55253254 | Msa0299960:CDS |
| TGTTACAATCACTTGTAGAG+TGG | 0.604182 | 2_3:+55254093 | None:intergenic |
| GTTACAATCACTTGTAGAGT+GGG | 0.605139 | 2_3:+55254094 | None:intergenic |
| CTACAAGTGATTGTAACATG+TGG | 0.615945 | 2_3:-55254088 | Msa0299960:CDS |
| AGGTTGAAAGAGTTTGTGAA+CGG | 0.618184 | 2_3:-55253234 | Msa0299960:CDS |
| TTTATCGTAAGAAAATTCGA+AGG | 0.623358 | 2_3:-55255420 | Msa0299960:five_prime_UTR |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_3:-55254251 | Msa0299960:CDS |
| GAACGGATCTATGGGCGATG+TGG | 0.672622 | 2_3:-55253217 | Msa0299960:CDS |
| ACAAGTGATTGTAACATGTG+GGG | 0.739715 | 2_3:-55254086 | Msa0299960:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2_3:-55254026 | Msa0299960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTATTGTTATGA+TGG | - | chr2_3:55253641-55253660 | Msa0299960:intron | 10.0% |
| !!! | TAAATTTATTTCTCTAAATT+CGG | + | chr2_3:55253739-55253758 | None:intergenic | 10.0% |
| !! | TTATTGAATAAATTTAATAC+AGG | - | chr2_3:55254327-55254346 | Msa0299960:intron | 10.0% |
| !!! | TTTATTTTTTATTGTTATGA+TGG | - | chr2_3:55253641-55253660 | Msa0299960:intron | 10.0% |
| !!! | TAAATTTATTTCTCTAAATT+CGG | + | chr2_3:55253739-55253758 | None:intergenic | 10.0% |
| !! | TTATTGAATAAATTTAATAC+AGG | - | chr2_3:55254327-55254346 | Msa0299960:intron | 10.0% |
| !! | TTAAATTGATTGGAATTTAT+AGG | + | chr2_3:55253169-55253188 | None:intergenic | 15.0% |
| !! | TATAAATTCCAATCAATTTA+AGG | - | chr2_3:55253168-55253187 | Msa0299960:CDS | 15.0% |
| !! | ATAAATAACCTTAAATTGAT+TGG | + | chr2_3:55253179-55253198 | None:intergenic | 15.0% |
| !!! | TCCAATATATTCTATATTTT+AGG | - | chr2_3:55253971-55253990 | Msa0299960:CDS | 15.0% |
| !! | ACCTAAAATATAGAATATAT+TGG | + | chr2_3:55253975-55253994 | None:intergenic | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_3:55254561-55254580 | None:intergenic | 15.0% |
| !!! | TTTTATAGTGTTAAAAGATA+AGG | - | chr2_3:55254830-55254849 | Msa0299960:intron | 15.0% |
| !!! | TTCTGATTTGATTATTAATT+TGG | - | chr2_3:55255306-55255325 | Msa0299960:CDS | 15.0% |
| !! | ATGTATATGTTTCTTAATTA+AGG | + | chr2_3:55255509-55255528 | None:intergenic | 15.0% |
| !! | TTAAATTGATTGGAATTTAT+AGG | + | chr2_3:55253169-55253188 | None:intergenic | 15.0% |
| !! | TATAAATTCCAATCAATTTA+AGG | - | chr2_3:55253168-55253187 | Msa0299960:CDS | 15.0% |
| !! | ATAAATAACCTTAAATTGAT+TGG | + | chr2_3:55253179-55253198 | None:intergenic | 15.0% |
| !!! | TCCAATATATTCTATATTTT+AGG | - | chr2_3:55253971-55253990 | Msa0299960:CDS | 15.0% |
| !! | ACCTAAAATATAGAATATAT+TGG | + | chr2_3:55253975-55253994 | None:intergenic | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_3:55254561-55254580 | None:intergenic | 15.0% |
| !!! | TTTTATAGTGTTAAAAGATA+AGG | - | chr2_3:55254830-55254849 | Msa0299960:intron | 15.0% |
| !!! | TTCTGATTTGATTATTAATT+TGG | - | chr2_3:55255306-55255325 | Msa0299960:CDS | 15.0% |
| !! | ATGTATATGTTTCTTAATTA+AGG | + | chr2_3:55255509-55255528 | None:intergenic | 15.0% |
| !! | TATAACATTTAGTAGATAGT+TGG | + | chr2_3:55253111-55253130 | None:intergenic | 20.0% |
| !!! | TATAGGATTTTGATTAGAAT+TGG | + | chr2_3:55253152-55253171 | None:intergenic | 20.0% |
| !! | CAAAAAGAATATACATATGT+GGG | + | chr2_3:55253569-55253588 | None:intergenic | 20.0% |
| !! | TCAAATGAATATACATATGT+GGG | + | chr2_3:55253597-55253616 | None:intergenic | 20.0% |
| !! | AAACAATGTGTTAAATAGTA+GGG | + | chr2_3:55253911-55253930 | None:intergenic | 20.0% |
| !! | AAAACAATGTGTTAAATAGT+AGG | + | chr2_3:55253912-55253931 | None:intergenic | 20.0% |
| !!! | ACTATTTAACACATTGTTTT+TGG | - | chr2_3:55253912-55253931 | Msa0299960:intron | 20.0% |
| !! | TATTGGAATATCATGAATAT+CGG | + | chr2_3:55253958-55253977 | None:intergenic | 20.0% |
| !! | TTATTCAATAATGCTACATT+AGG | + | chr2_3:55254318-55254337 | None:intergenic | 20.0% |
| !! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2_3:55254457-55254476 | Msa0299960:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_3:55254496-55254515 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_3:55254495-55254514 | Msa0299960:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_3:55254496-55254515 | Msa0299960:intron | 20.0% |
| !! | TTTAACACTATAAAAAGACA+AGG | + | chr2_3:55254825-55254844 | None:intergenic | 20.0% |
| !!! | GAAAATTTTTCTTTGACTTT+TGG | + | chr2_3:55254966-55254985 | None:intergenic | 20.0% |
| !!! | AATTTCGAGCATATTTTTTA+GGG | + | chr2_3:55255042-55255061 | None:intergenic | 20.0% |
| !!! | CATTTTTTGCATTAAGTTTT+GGG | + | chr2_3:55255088-55255107 | None:intergenic | 20.0% |
| !!! | TCATTTTTTGCATTAAGTTT+TGG | + | chr2_3:55255089-55255108 | None:intergenic | 20.0% |
| !!! | TTATTATTCAAATGCACTTT+TGG | + | chr2_3:55255183-55255202 | None:intergenic | 20.0% |
| !! | ATGTTTCTTAATTAAGGATT+TGG | + | chr2_3:55255503-55255522 | None:intergenic | 20.0% |
| !! | TATAACATTTAGTAGATAGT+TGG | + | chr2_3:55253111-55253130 | None:intergenic | 20.0% |
| !!! | TATAGGATTTTGATTAGAAT+TGG | + | chr2_3:55253152-55253171 | None:intergenic | 20.0% |
| !! | CAAAAAGAATATACATATGT+GGG | + | chr2_3:55253569-55253588 | None:intergenic | 20.0% |
| !! | TCAAATGAATATACATATGT+GGG | + | chr2_3:55253597-55253616 | None:intergenic | 20.0% |
| !! | AAACAATGTGTTAAATAGTA+GGG | + | chr2_3:55253911-55253930 | None:intergenic | 20.0% |
| !! | AAAACAATGTGTTAAATAGT+AGG | + | chr2_3:55253912-55253931 | None:intergenic | 20.0% |
| !!! | ACTATTTAACACATTGTTTT+TGG | - | chr2_3:55253912-55253931 | Msa0299960:intron | 20.0% |
| !! | TATTGGAATATCATGAATAT+CGG | + | chr2_3:55253958-55253977 | None:intergenic | 20.0% |
| !! | TTATTCAATAATGCTACATT+AGG | + | chr2_3:55254318-55254337 | None:intergenic | 20.0% |
| !! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2_3:55254457-55254476 | Msa0299960:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_3:55254496-55254515 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_3:55254495-55254514 | Msa0299960:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_3:55254496-55254515 | Msa0299960:intron | 20.0% |
| !! | TTTAACACTATAAAAAGACA+AGG | + | chr2_3:55254825-55254844 | None:intergenic | 20.0% |
| !!! | GAAAATTTTTCTTTGACTTT+TGG | + | chr2_3:55254966-55254985 | None:intergenic | 20.0% |
| !!! | AATTTCGAGCATATTTTTTA+GGG | + | chr2_3:55255042-55255061 | None:intergenic | 20.0% |
| !!! | CATTTTTTGCATTAAGTTTT+GGG | + | chr2_3:55255088-55255107 | None:intergenic | 20.0% |
| !!! | TCATTTTTTGCATTAAGTTT+TGG | + | chr2_3:55255089-55255108 | None:intergenic | 20.0% |
| !!! | TTATTATTCAAATGCACTTT+TGG | + | chr2_3:55255183-55255202 | None:intergenic | 20.0% |
| !! | ATGTTTCTTAATTAAGGATT+TGG | + | chr2_3:55255503-55255522 | None:intergenic | 20.0% |
| ! | TTTATCGTAAGAAAATTCGA+AGG | - | chr2_3:55253194-55253213 | Msa0299960:CDS | 25.0% |
| !! | TTTTCATCACATATGTATGT+AGG | - | chr2_3:55253374-55253393 | Msa0299960:intron | 25.0% |
| ! | TTTCATCACATATGTATGTA+GGG | - | chr2_3:55253375-55253394 | Msa0299960:intron | 25.0% |
| ! | TTATGCTAACAAATACCTAA+AGG | - | chr2_3:55253398-55253417 | Msa0299960:intron | 25.0% |
| ! | AAATGTTAACAAGTGTTCTT+GGG | + | chr2_3:55253546-55253565 | None:intergenic | 25.0% |
| ! | CCAAAAAGAATATACATATG+TGG | + | chr2_3:55253570-55253589 | None:intergenic | 25.0% |
| !! | CCACATATGTATATTCTTTT+TGG | - | chr2_3:55253567-55253586 | Msa0299960:intron | 25.0% |
| ! | CAAATGAATATACATATGTG+GGG | + | chr2_3:55253596-55253615 | None:intergenic | 25.0% |
| ! | CTCAAATGAATATACATATG+TGG | + | chr2_3:55253598-55253617 | None:intergenic | 25.0% |
| !! | ATTTATTTCTCTAAATTCGG+TGG | + | chr2_3:55253736-55253755 | None:intergenic | 25.0% |
| !!! | ACATAGATCTTATTTTGTGA+AGG | - | chr2_3:55253802-55253821 | Msa0299960:intron | 25.0% |
| ! | CAACTAGATTTATAGAATTC+AGG | - | chr2_3:55254062-55254081 | Msa0299960:CDS | 25.0% |
| !!! | AGTTTAATTTGCATCACATT+AGG | - | chr2_3:55254171-55254190 | Msa0299960:CDS | 25.0% |
| ! | CATATTTGATGAAAATAGGT+TGG | + | chr2_3:55254229-55254248 | None:intergenic | 25.0% |
| !! | CAACCTATTTTCATCAAATA+TGG | - | chr2_3:55254227-55254246 | Msa0299960:CDS | 25.0% |
| ! | CTACCATATTTGATGAAAAT+AGG | + | chr2_3:55254233-55254252 | None:intergenic | 25.0% |
| ! | TGAAATTTCACAAGTATGAT+GGG | + | chr2_3:55254282-55254301 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_3:55254432-55254451 | Msa0299960:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_3:55254433-55254452 | Msa0299960:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_3:55254612-55254631 | Msa0299960:intron | 25.0% |
| !! | GCAGCTTTAATATAATACAA+GGG | + | chr2_3:55254739-55254758 | None:intergenic | 25.0% |
| !! | TGCAGCTTTAATATAATACA+AGG | + | chr2_3:55254740-55254759 | None:intergenic | 25.0% |
| !!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2_3:55254777-55254796 | None:intergenic | 25.0% |
| ! | ACTAGACTTGAATACATATT+TGG | - | chr2_3:55254786-55254805 | Msa0299960:intron | 25.0% |
| ! | TAAAAAGACAAGGTTGAATA+TGG | + | chr2_3:55254815-55254834 | None:intergenic | 25.0% |
| !!! | TGATGATGTAAAACTTTTGA+GGG | - | chr2_3:55254939-55254958 | Msa0299960:intron | 25.0% |
| !!! | CAATTTCGAGCATATTTTTT+AGG | + | chr2_3:55255043-55255062 | None:intergenic | 25.0% |
| ! | TTTAAAAAAAATCGCACGTT+TGG | + | chr2_3:55255159-55255178 | None:intergenic | 25.0% |
| !! | CTCTTAACAATATTTTGCAA+AGG | - | chr2_3:55255233-55255252 | Msa0299960:intron | 25.0% |
| ! | TTTATCGTAAGAAAATTCGA+AGG | - | chr2_3:55253194-55253213 | Msa0299960:CDS | 25.0% |
| !! | TTTTCATCACATATGTATGT+AGG | - | chr2_3:55253374-55253393 | Msa0299960:intron | 25.0% |
| ! | TTTCATCACATATGTATGTA+GGG | - | chr2_3:55253375-55253394 | Msa0299960:intron | 25.0% |
| ! | TTATGCTAACAAATACCTAA+AGG | - | chr2_3:55253398-55253417 | Msa0299960:intron | 25.0% |
| ! | AAATGTTAACAAGTGTTCTT+GGG | + | chr2_3:55253546-55253565 | None:intergenic | 25.0% |
| ! | CCAAAAAGAATATACATATG+TGG | + | chr2_3:55253570-55253589 | None:intergenic | 25.0% |
| !! | CCACATATGTATATTCTTTT+TGG | - | chr2_3:55253567-55253586 | Msa0299960:intron | 25.0% |
| ! | CAAATGAATATACATATGTG+GGG | + | chr2_3:55253596-55253615 | None:intergenic | 25.0% |
| ! | CTCAAATGAATATACATATG+TGG | + | chr2_3:55253598-55253617 | None:intergenic | 25.0% |
| !! | ATTTATTTCTCTAAATTCGG+TGG | + | chr2_3:55253736-55253755 | None:intergenic | 25.0% |
| !!! | ACATAGATCTTATTTTGTGA+AGG | - | chr2_3:55253802-55253821 | Msa0299960:intron | 25.0% |
| ! | CAACTAGATTTATAGAATTC+AGG | - | chr2_3:55254062-55254081 | Msa0299960:CDS | 25.0% |
| !!! | AGTTTAATTTGCATCACATT+AGG | - | chr2_3:55254171-55254190 | Msa0299960:CDS | 25.0% |
| ! | CATATTTGATGAAAATAGGT+TGG | + | chr2_3:55254229-55254248 | None:intergenic | 25.0% |
| !! | CAACCTATTTTCATCAAATA+TGG | - | chr2_3:55254227-55254246 | Msa0299960:CDS | 25.0% |
| ! | CTACCATATTTGATGAAAAT+AGG | + | chr2_3:55254233-55254252 | None:intergenic | 25.0% |
| ! | TGAAATTTCACAAGTATGAT+GGG | + | chr2_3:55254282-55254301 | None:intergenic | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_3:55254432-55254451 | Msa0299960:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_3:55254433-55254452 | Msa0299960:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_3:55254612-55254631 | Msa0299960:intron | 25.0% |
| !! | GCAGCTTTAATATAATACAA+GGG | + | chr2_3:55254739-55254758 | None:intergenic | 25.0% |
| !! | TGCAGCTTTAATATAATACA+AGG | + | chr2_3:55254740-55254759 | None:intergenic | 25.0% |
| !!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2_3:55254777-55254796 | None:intergenic | 25.0% |
| ! | ACTAGACTTGAATACATATT+TGG | - | chr2_3:55254786-55254805 | Msa0299960:intron | 25.0% |
| ! | TAAAAAGACAAGGTTGAATA+TGG | + | chr2_3:55254815-55254834 | None:intergenic | 25.0% |
| !!! | TGATGATGTAAAACTTTTGA+GGG | - | chr2_3:55254939-55254958 | Msa0299960:intron | 25.0% |
| !!! | CAATTTCGAGCATATTTTTT+AGG | + | chr2_3:55255043-55255062 | None:intergenic | 25.0% |
| ! | TTTAAAAAAAATCGCACGTT+TGG | + | chr2_3:55255159-55255178 | None:intergenic | 25.0% |
| !! | CTCTTAACAATATTTTGCAA+AGG | - | chr2_3:55255233-55255252 | Msa0299960:intron | 25.0% |
| AATTCGAAGGTTTCTTTCAA+TGG | - | chr2_3:55253207-55253226 | Msa0299960:CDS | 30.0% | |
| TGGAACATAATCAACAAGAA+TGG | - | chr2_3:55253227-55253246 | Msa0299960:CDS | 30.0% | |
| TCTTCCTAGCTATAATTCTA+AGG | - | chr2_3:55253339-55253358 | Msa0299960:intron | 30.0% | |
| TTCACCTTAGAATTATAGCT+AGG | + | chr2_3:55253346-55253365 | None:intergenic | 30.0% | |
| !! | ATACCTAAAGGCATTGTTTA+AGG | - | chr2_3:55253410-55253429 | Msa0299960:intron | 30.0% |
| AATCCTTAAACAATGCCTTT+AGG | + | chr2_3:55253416-55253435 | None:intergenic | 30.0% | |
| GAAATGTTAACAAGTGTTCT+TGG | + | chr2_3:55253547-55253566 | None:intergenic | 30.0% | |
| !! | GTTTTTAGATTCAATTTGCC+AGG | + | chr2_3:55253889-55253908 | None:intergenic | 30.0% |
| GATGAAGAAAATAGTTTCGT+AGG | + | chr2_3:55254000-55254019 | None:intergenic | 30.0% | |
| GGGTTTATGAAGGAAAAAAA+GGG | + | chr2_3:55254262-55254281 | None:intergenic | 30.0% | |
| TGGGTTTATGAAGGAAAAAA+AGG | + | chr2_3:55254263-55254282 | None:intergenic | 30.0% | |
| GTGAAATTTCACAAGTATGA+TGG | + | chr2_3:55254283-55254302 | None:intergenic | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_3:55254527-55254546 | Msa0299960:intron | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2_3:55254659-55254678 | None:intergenic | 30.0% | |
| ATTAAAGCTGCAATTGCAAT+TGG | - | chr2_3:55254748-55254767 | Msa0299960:intron | 30.0% | |
| !! | GTGATGATGTAAAACTTTTG+AGG | - | chr2_3:55254938-55254957 | Msa0299960:intron | 30.0% |
| GAAAGACTAAATCATGTTTC+TGG | - | chr2_3:55255121-55255140 | Msa0299960:intron | 30.0% | |
| CCAAATTGTAACAAAGTTTG+CGG | + | chr2_3:55255341-55255360 | None:intergenic | 30.0% | |
| ! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2_3:55255492-55255511 | None:intergenic | 30.0% |
| AATTCGAAGGTTTCTTTCAA+TGG | - | chr2_3:55253207-55253226 | Msa0299960:CDS | 30.0% | |
| TGGAACATAATCAACAAGAA+TGG | - | chr2_3:55253227-55253246 | Msa0299960:CDS | 30.0% | |
| TCTTCCTAGCTATAATTCTA+AGG | - | chr2_3:55253339-55253358 | Msa0299960:intron | 30.0% | |
| TTCACCTTAGAATTATAGCT+AGG | + | chr2_3:55253346-55253365 | None:intergenic | 30.0% | |
| !! | ATACCTAAAGGCATTGTTTA+AGG | - | chr2_3:55253410-55253429 | Msa0299960:intron | 30.0% |
| AATCCTTAAACAATGCCTTT+AGG | + | chr2_3:55253416-55253435 | None:intergenic | 30.0% | |
| GAAATGTTAACAAGTGTTCT+TGG | + | chr2_3:55253547-55253566 | None:intergenic | 30.0% | |
| !! | GTTTTTAGATTCAATTTGCC+AGG | + | chr2_3:55253889-55253908 | None:intergenic | 30.0% |
| GATGAAGAAAATAGTTTCGT+AGG | + | chr2_3:55254000-55254019 | None:intergenic | 30.0% | |
| GGGTTTATGAAGGAAAAAAA+GGG | + | chr2_3:55254262-55254281 | None:intergenic | 30.0% | |
| TGGGTTTATGAAGGAAAAAA+AGG | + | chr2_3:55254263-55254282 | None:intergenic | 30.0% | |
| GTGAAATTTCACAAGTATGA+TGG | + | chr2_3:55254283-55254302 | None:intergenic | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_3:55254527-55254546 | Msa0299960:intron | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2_3:55254659-55254678 | None:intergenic | 30.0% | |
| ATTAAAGCTGCAATTGCAAT+TGG | - | chr2_3:55254748-55254767 | Msa0299960:intron | 30.0% | |
| !! | GTGATGATGTAAAACTTTTG+AGG | - | chr2_3:55254938-55254957 | Msa0299960:intron | 30.0% |
| GAAAGACTAAATCATGTTTC+TGG | - | chr2_3:55255121-55255140 | Msa0299960:intron | 30.0% | |
| CCAAATTGTAACAAAGTTTG+CGG | + | chr2_3:55255341-55255360 | None:intergenic | 30.0% | |
| ! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2_3:55255492-55255511 | None:intergenic | 30.0% |
| TTCAACCAAAGTCGAAAGAA+AGG | - | chr2_3:55253258-55253277 | Msa0299960:CDS | 35.0% | |
| GAAAGGCTGTTGAGAAAAAT+AGG | - | chr2_3:55253275-55253294 | Msa0299960:CDS | 35.0% | |
| !! | TGCAGGGGTTTTATCAATTT+GGG | + | chr2_3:55253842-55253861 | None:intergenic | 35.0% |
| !! | TTGCAGGGGTTTTATCAATT+TGG | + | chr2_3:55253843-55253862 | None:intergenic | 35.0% |
| !! | TCTGACAAATTGATTTGCAG+GGG | + | chr2_3:55253857-55253876 | None:intergenic | 35.0% |
| !! | CTCTGACAAATTGATTTGCA+GGG | + | chr2_3:55253858-55253877 | None:intergenic | 35.0% |
| ! | GGTTGGTTCAAAGATTTGAA+TGG | + | chr2_3:55254212-55254231 | None:intergenic | 35.0% |
| !! | CAAGTATGATGGGTTTATGA+AGG | + | chr2_3:55254272-55254291 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_3:55254364-55254383 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_3:55254363-55254382 | Msa0299960:intron | 35.0% | |
| CCAACTTTAGATTTGTCTCT+AGG | + | chr2_3:55254408-55254427 | None:intergenic | 35.0% | |
| ! | CCTAGAGACAAATCTAAAGT+TGG | - | chr2_3:55254405-55254424 | Msa0299960:intron | 35.0% |
| GTTACAATCACTTGTAGAGT+GGG | + | chr2_3:55254523-55254542 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_3:55254524-55254543 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_3:55254526-55254545 | Msa0299960:intron | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_3:55254528-55254547 | Msa0299960:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_3:55254616-55254635 | Msa0299960:intron | 35.0% | |
| ! | TATGCTCGAAATTGAGTTGT+AGG | - | chr2_3:55255049-55255068 | Msa0299960:intron | 35.0% |
| CCGCAAACTTTGTTACAATT+TGG | - | chr2_3:55255338-55255357 | Msa0299960:CDS | 35.0% | |
| GAGCAATCAAAATAAGTGAG+AGG | - | chr2_3:55255360-55255379 | Msa0299960:CDS | 35.0% | |
| AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2_3:55255380-55255399 | Msa0299960:CDS | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_3:55255431-55255450 | Msa0299960:five_prime_UTR | 35.0% | |
| TTGAAATTGGATCTGAGAGT+TGG | - | chr2_3:55255444-55255463 | Msa0299960:five_prime_UTR | 35.0% | |
| TGAAATTGGATCTGAGAGTT+GGG | - | chr2_3:55255445-55255464 | Msa0299960:five_prime_UTR | 35.0% | |
| TTCAACCAAAGTCGAAAGAA+AGG | - | chr2_3:55253258-55253277 | Msa0299960:CDS | 35.0% | |
| GAAAGGCTGTTGAGAAAAAT+AGG | - | chr2_3:55253275-55253294 | Msa0299960:CDS | 35.0% | |
| !! | TGCAGGGGTTTTATCAATTT+GGG | + | chr2_3:55253842-55253861 | None:intergenic | 35.0% |
| !! | TTGCAGGGGTTTTATCAATT+TGG | + | chr2_3:55253843-55253862 | None:intergenic | 35.0% |
| !! | TCTGACAAATTGATTTGCAG+GGG | + | chr2_3:55253857-55253876 | None:intergenic | 35.0% |
| !! | CTCTGACAAATTGATTTGCA+GGG | + | chr2_3:55253858-55253877 | None:intergenic | 35.0% |
| ! | GGTTGGTTCAAAGATTTGAA+TGG | + | chr2_3:55254212-55254231 | None:intergenic | 35.0% |
| !! | CAAGTATGATGGGTTTATGA+AGG | + | chr2_3:55254272-55254291 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_3:55254364-55254383 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_3:55254363-55254382 | Msa0299960:intron | 35.0% | |
| CCAACTTTAGATTTGTCTCT+AGG | + | chr2_3:55254408-55254427 | None:intergenic | 35.0% | |
| ! | CCTAGAGACAAATCTAAAGT+TGG | - | chr2_3:55254405-55254424 | Msa0299960:intron | 35.0% |
| GTTACAATCACTTGTAGAGT+GGG | + | chr2_3:55254523-55254542 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_3:55254524-55254543 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_3:55254526-55254545 | Msa0299960:intron | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_3:55254528-55254547 | Msa0299960:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_3:55254616-55254635 | Msa0299960:intron | 35.0% | |
| ! | TATGCTCGAAATTGAGTTGT+AGG | - | chr2_3:55255049-55255068 | Msa0299960:intron | 35.0% |
| CCGCAAACTTTGTTACAATT+TGG | - | chr2_3:55255338-55255357 | Msa0299960:CDS | 35.0% | |
| GAGCAATCAAAATAAGTGAG+AGG | - | chr2_3:55255360-55255379 | Msa0299960:CDS | 35.0% | |
| AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2_3:55255380-55255399 | Msa0299960:CDS | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_3:55255431-55255450 | Msa0299960:five_prime_UTR | 35.0% | |
| TTGAAATTGGATCTGAGAGT+TGG | - | chr2_3:55255444-55255463 | Msa0299960:five_prime_UTR | 35.0% | |
| TGAAATTGGATCTGAGAGTT+GGG | - | chr2_3:55255445-55255464 | Msa0299960:five_prime_UTR | 35.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2_3:55253256-55253275 | None:intergenic | 40.0% | |
| AACAGCCTTTCTTTCGACTT+TGG | + | chr2_3:55253266-55253285 | None:intergenic | 40.0% | |
| ! | GAGAGTTGAGTTTGGAATAG+AGG | + | chr2_3:55253318-55253337 | None:intergenic | 40.0% |
| AGGAAGAAGAGAGTTGAGTT+TGG | + | chr2_3:55253326-55253345 | None:intergenic | 40.0% | |
| GATGGAAATAATGCGACATG+TGG | - | chr2_3:55253659-55253678 | Msa0299960:intron | 40.0% | |
| ACGTAACATACCACAAGCTA+AGG | - | chr2_3:55253763-55253782 | Msa0299960:intron | 40.0% | |
| !! | GATAGTTTAGCCTTAGCTTG+TGG | + | chr2_3:55253776-55253795 | None:intergenic | 40.0% |
| !! | CAGGGGTTTTATCAATTTGG+GGG | + | chr2_3:55253840-55253859 | None:intergenic | 40.0% |
| !! | GCAGGGGTTTTATCAATTTG+GGG | + | chr2_3:55253841-55253860 | None:intergenic | 40.0% |
| !! | CCTCTGACAAATTGATTTGC+AGG | + | chr2_3:55253859-55253878 | None:intergenic | 40.0% |
| CCTGCAAATCAATTTGTCAG+AGG | - | chr2_3:55253856-55253875 | Msa0299960:intron | 40.0% | |
| TTTGTCAGAGGTCAAAAACC+TGG | - | chr2_3:55253868-55253887 | Msa0299960:intron | 40.0% | |
| !! | CGCGTGCAAAATTAGTTTGT+TGG | + | chr2_3:55254026-55254045 | None:intergenic | 40.0% |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_3:55254370-55254389 | None:intergenic | 40.0% | |
| AGAGTTTGTGAACGGATCTA+TGG | - | chr2_3:55255388-55255407 | Msa0299960:CDS | 40.0% | |
| GAGTTTGTGAACGGATCTAT+GGG | - | chr2_3:55255389-55255408 | Msa0299960:CDS | 40.0% | |
| TGGAAACACAGTCTCAATTG+TGG | - | chr2_3:55255417-55255436 | Msa0299960:five_prime_UTR | 40.0% | |
| GGAAACACAGTCTCAATTGT+GGG | - | chr2_3:55255418-55255437 | Msa0299960:five_prime_UTR | 40.0% | |
| CTTTCGACTTTGGTTGAAGA+AGG | + | chr2_3:55253256-55253275 | None:intergenic | 40.0% | |
| AACAGCCTTTCTTTCGACTT+TGG | + | chr2_3:55253266-55253285 | None:intergenic | 40.0% | |
| ! | GAGAGTTGAGTTTGGAATAG+AGG | + | chr2_3:55253318-55253337 | None:intergenic | 40.0% |
| AGGAAGAAGAGAGTTGAGTT+TGG | + | chr2_3:55253326-55253345 | None:intergenic | 40.0% | |
| GATGGAAATAATGCGACATG+TGG | - | chr2_3:55253659-55253678 | Msa0299960:intron | 40.0% | |
| ACGTAACATACCACAAGCTA+AGG | - | chr2_3:55253763-55253782 | Msa0299960:intron | 40.0% | |
| !! | GATAGTTTAGCCTTAGCTTG+TGG | + | chr2_3:55253776-55253795 | None:intergenic | 40.0% |
| !! | CAGGGGTTTTATCAATTTGG+GGG | + | chr2_3:55253840-55253859 | None:intergenic | 40.0% |
| !! | GCAGGGGTTTTATCAATTTG+GGG | + | chr2_3:55253841-55253860 | None:intergenic | 40.0% |
| !! | CCTCTGACAAATTGATTTGC+AGG | + | chr2_3:55253859-55253878 | None:intergenic | 40.0% |
| CCTGCAAATCAATTTGTCAG+AGG | - | chr2_3:55253856-55253875 | Msa0299960:intron | 40.0% | |
| TTTGTCAGAGGTCAAAAACC+TGG | - | chr2_3:55253868-55253887 | Msa0299960:intron | 40.0% | |
| !! | CGCGTGCAAAATTAGTTTGT+TGG | + | chr2_3:55254026-55254045 | None:intergenic | 40.0% |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_3:55254370-55254389 | None:intergenic | 40.0% | |
| AGAGTTTGTGAACGGATCTA+TGG | - | chr2_3:55255388-55255407 | Msa0299960:CDS | 40.0% | |
| GAGTTTGTGAACGGATCTAT+GGG | - | chr2_3:55255389-55255408 | Msa0299960:CDS | 40.0% | |
| TGGAAACACAGTCTCAATTG+TGG | - | chr2_3:55255417-55255436 | Msa0299960:five_prime_UTR | 40.0% | |
| GGAAACACAGTCTCAATTGT+GGG | - | chr2_3:55255418-55255437 | Msa0299960:five_prime_UTR | 40.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_3:55254648-55254667 | Msa0299960:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_3:55254648-55254667 | Msa0299960:intron | 45.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_3:55254588-55254607 | Msa0299960:intron | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_3:55254588-55254607 | Msa0299960:intron | 50.0% | |
| GAACGGATCTATGGGCGATG+TGG | - | chr2_3:55255397-55255416 | Msa0299960:exon | 55.0% | |
| GAACGGATCTATGGGCGATG+TGG | - | chr2_3:55255397-55255416 | Msa0299960:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55253098 | 55255538 | 55253098 | ID=Msa0299960;Name=Msa0299960 |
| chr2_3 | mRNA | 55253098 | 55255538 | 55253098 | ID=Msa0299960-mRNA-1;Parent=Msa0299960;Name=Msa0299960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=128|1|1|1|1|1|3|27|210 |
| chr2_3 | exon | 55253098 | 55253301 | 55253098 | ID=Msa0299960-mRNA-1:exon:17657;Parent=Msa0299960-mRNA-1 |
| chr2_3 | exon | 55253967 | 55254287 | 55253967 | ID=Msa0299960-mRNA-1:exon:17656;Parent=Msa0299960-mRNA-1 |
| chr2_3 | exon | 55255276 | 55255538 | 55255276 | ID=Msa0299960-mRNA-1:exon:17655;Parent=Msa0299960-mRNA-1 |
| chr2_3 | five_prime_UTR | 55255411 | 55255538 | 55255411 | ID=Msa0299960-mRNA-1:five_prime_utr;Parent=Msa0299960-mRNA-1 |
| chr2_3 | CDS | 55255276 | 55255410 | 55255276 | ID=Msa0299960-mRNA-1:cds;Parent=Msa0299960-mRNA-1 |
| chr2_3 | CDS | 55253967 | 55254287 | 55253967 | ID=Msa0299960-mRNA-1:cds;Parent=Msa0299960-mRNA-1 |
| chr2_3 | CDS | 55253125 | 55253301 | 55253125 | ID=Msa0299960-mRNA-1:cds;Parent=Msa0299960-mRNA-1 |
| chr2_3 | three_prime_UTR | 55253098 | 55253124 | 55253098 | ID=Msa0299960-mRNA-1:three_prime_utr;Parent=Msa0299960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
