AlfalfaGEDB | Msa0301350

M. sativa cultivar zhongmu-4 / Msa0301350

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301350	XP_003597252.2	97.616	839	14	1	1	833	1	839	0.0	1703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301350	sp\|Q9SE43\|REV_ARATH	75.118	848	188	8	1	833	3	842	0.0	1315

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0301350	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0301350	MtrunA17_Chr2g0326731	97.616	839	14	1	1	833	1	839	1703
Msa0301350	MtrunA17_Chr4g0028991	79.103	847	160	8	1	833	3	846	1378
Msa0301350	MtrunA17_Chr2g0292391	63.571	840	280	10	13	833	4	836	1090
Msa0301350	MtrunA17_Chr2g0331131	61.796	835	287	11	21	833	12	836	1042
Msa0301350	MtrunA17_Chr3g0140351	61.602	849	293	13	3	833	2	835	1039
Msa0301350	MtrunA17_Chr8g0340411	59.595	839	304	12	16	833	8	832	1028

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0301350	AT5G60690.1	75.118	848	188	8	1	833	3	842	0.0	1315
Msa0301350	AT2G34710.1	62.791	860	282	13	3	833	2	852	0.0	1070
Msa0301350	AT1G30490.1	62.395	835	280	11	21	833	19	841	0.0	1048
Msa0301350	AT1G52150.1	61.071	840	282	15	21	833	15	836	0.0	1029
Msa0301350	AT1G52150.2	60.952	840	284	15	21	833	15	837	0.0	1027
Msa0301350	AT4G32880.1	59.547	838	305	14	17	833	9	833	0.0	1003
Msa0301350	AT1G52150.3	61.499	787	268	15	21	785	15	788	0.0	959
Msa0301350	AT5G32670.1	64.286	70	25	0	289	358	37	106	2.67e-25	104
Msa0301350	AT5G52170.2	25.203	369	218	11	24	355	61	408	2.59e-15	80.9
Msa0301350	AT5G52170.3	25.203	369	218	11	24	355	61	408	2.90e-15	80.5

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Find 254 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGGAATAAAGTCA+GGG	0.676082	2_3:-57323128	None:intergenic
AAATGAGAGGCTGCAGAAGC+AGG	0.455804	2_3:+57324330	Msa0301350:CDS
AACAACTCTAGTGGCTCTAC+AGG	0.497254	2_3:+57327871	Msa0301350:CDS
AACAGCAGCAAATCGAACCT+TGG	0.582279	2_3:+57327200	Msa0301350:CDS
AACCAAACCTTGATCTGCTT+AGG	0.671065	2_3:-57324091	None:intergenic
AACCTCGTAGACCTCATTCC+AGG	0.475028	2_3:-57326570	None:intergenic
AACTTCAAAATTACCCAGCA+GGG	0.589166	2_3:-57324650	None:intergenic
AAGAAGTACTTAAGTTAAAA+GGG	0.484220	2_3:+57323356	Msa0301350:five_prime_UTR
AAGACCAGATGTCAAATCCA+AGG	0.596011	2_3:-57327217	None:intergenic
AAGCACTTACACTAGCTCAA+TGG	0.536805	2_3:+57327475	Msa0301350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCATTAGAAACAAACAACA+AGG	+	chr2_3:57323017-57323036	Msa0301350:five_prime_UTR	30.0%
AGTACTTAAGTTAAAAGGGT+CGG	+	chr2_3:57323360-57323379	Msa0301350:five_prime_UTR	30.0%
CCCTAAAATAAAACCAAAAG+AGG	-	chr2_3:57323839-57323858	None:intergenic	30.0%
TTGAATTTGTGTTGTGTGAA+AGG	+	chr2_3:57324167-57324186	Msa0301350:intron	30.0%
GTAATTAAAAAGGGGACATA+TGG	+	chr2_3:57325071-57325090	Msa0301350:intron	30.0%
AATGCATTACTATTGTTGCA+TGG	+	chr2_3:57325473-57325492	Msa0301350:intron	30.0%
ATGCATTACTATTGTTGCAT+GGG	+	chr2_3:57325474-57325493	Msa0301350:intron	30.0%
GCATTATTAATTCACGATGT+AGG	+	chr2_3:57325874-57325893	Msa0301350:intron	30.0%
GACTAATGTGATTAGTACTA+TGG	+	chr2_3:57325918-57325937	Msa0301350:intron	30.0%
TTTAAACATCATTCTTGCAG+AGG	+	chr2_3:57326144-57326163	Msa0301350:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	57322999	57328499	57322999	ID=Msa0301350;Name=Msa0301350
chr2_3	mRNA	57322999	57328499	57322999	ID=Msa0301350-mRNA-1;Parent=Msa0301350;Name=Msa0301350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=900\|0.88\|0.84\|1\|0.88\|0.84\|19\|256\|833
chr2_3	exon	57322999	57324125	57322999	ID=Msa0301350-mRNA-1:exon:18492;Parent=Msa0301350-mRNA-1
chr2_3	exon	57324243	57324402	57324243	ID=Msa0301350-mRNA-1:exon:18493;Parent=Msa0301350-mRNA-1
chr2_3	exon	57324567	57324658	57324567	ID=Msa0301350-mRNA-1:exon:18494;Parent=Msa0301350-mRNA-1
chr2_3	exon	57324750	57324840	57324750	ID=Msa0301350-mRNA-1:exon:18495;Parent=Msa0301350-mRNA-1
chr2_3	exon	57324975	57325070	57324975	ID=Msa0301350-mRNA-1:exon:18496;Parent=Msa0301350-mRNA-1
chr2_3	exon	57325179	57325292	57325179	ID=Msa0301350-mRNA-1:exon:18497;Parent=Msa0301350-mRNA-1
chr2_3	exon	57325370	57325453	57325370	ID=Msa0301350-mRNA-1:exon:18498;Parent=Msa0301350-mRNA-1
chr2_3	exon	57325543	57325698	57325543	ID=Msa0301350-mRNA-1:exon:18499;Parent=Msa0301350-mRNA-1
chr2_3	exon	57325790	57325864	57325790	ID=Msa0301350-mRNA-1:exon:18500;Parent=Msa0301350-mRNA-1
chr2_3	exon	57325952	57326058	57325952	ID=Msa0301350-mRNA-1:exon:18501;Parent=Msa0301350-mRNA-1
chr2_3	exon	57326164	57326347	57326164	ID=Msa0301350-mRNA-1:exon:18502;Parent=Msa0301350-mRNA-1
chr2_3	exon	57326456	57326644	57326456	ID=Msa0301350-mRNA-1:exon:18503;Parent=Msa0301350-mRNA-1
chr2_3	exon	57326779	57326853	57326779	ID=Msa0301350-mRNA-1:exon:18504;Parent=Msa0301350-mRNA-1
chr2_3	exon	57326954	57327088	57326954	ID=Msa0301350-mRNA-1:exon:18505;Parent=Msa0301350-mRNA-1
chr2_3	exon	57327183	57327383	57327183	ID=Msa0301350-mRNA-1:exon:18506;Parent=Msa0301350-mRNA-1
chr2_3	exon	57327402	57327514	57327402	ID=Msa0301350-mRNA-1:exon:18507;Parent=Msa0301350-mRNA-1
chr2_3	exon	57327608	57327713	57327608	ID=Msa0301350-mRNA-1:exon:18508;Parent=Msa0301350-mRNA-1
chr2_3	exon	57327821	57327970	57327821	ID=Msa0301350-mRNA-1:exon:18509;Parent=Msa0301350-mRNA-1
chr2_3	exon	57328097	57328499	57328097	ID=Msa0301350-mRNA-1:exon:18510;Parent=Msa0301350-mRNA-1
chr2_3	five_prime_UTR	57322999	57323898	57322999	ID=Msa0301350-mRNA-1:five_prime_utr;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57323899	57324125	57323899	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57324243	57324402	57324243	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57324567	57324658	57324567	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57324750	57324840	57324750	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57324975	57325070	57324975	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57325179	57325292	57325179	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57325370	57325453	57325370	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57325543	57325698	57325543	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57325790	57325864	57325790	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57325952	57326058	57325952	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57326164	57326347	57326164	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57326456	57326644	57326456	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57326779	57326853	57326779	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57326954	57327088	57326954	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57327183	57327383	57327183	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57327402	57327514	57327402	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57327608	57327713	57327608	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57327821	57327970	57327821	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	CDS	57328097	57328243	57328097	ID=Msa0301350-mRNA-1:cds;Parent=Msa0301350-mRNA-1
chr2_3	three_prime_UTR	57328244	57328499	57328244	ID=Msa0301350-mRNA-1:three_prime_utr;Parent=Msa0301350-mRNA-1

Gene Sequence

>Msa0301350

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGATTTATGCGCCAGCAATTGCACACTACCCCAGCAGCTCCAAATGCTGACAGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTAGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCCTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTTCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGTAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCCGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGTTACTTGATTCGACCATGTGAAGGTGGAGGATCGATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGACTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCAAATCCAGCAAGTTCCCTTTCACTCCTCGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTTAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGACGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACACAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTCCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA

Protein sequence

>Msa0301350

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADSSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHDEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNTTAANRTLDLTSGLEVSQATAHANGDASCPNNRCALTVAFQFPFESGLQDNVAAMARQYVRRAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*