Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301830 | XP_003597300.2 | 94.821 | 251 | 9 | 2 | 1 | 247 | 1 | 251 | 3.48e-148 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0301830 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301830 | MtrunA17_Chr2g0327621 | 94.821 | 251 | 9 | 2 | 1 | 247 | 1 | 251 | 3.20e-152 | 424 |
| Msa0301830 | MtrunA17_Chr4g0030421 | 65.152 | 132 | 44 | 2 | 118 | 247 | 1 | 132 | 1.02e-48 | 157 |
| Msa0301830 | MtrunA17_Chr8g0387241 | 48.101 | 158 | 62 | 7 | 55 | 202 | 132 | 279 | 8.37e-29 | 110 |
| Msa0301830 | MtrunA17_Chr5g0397361 | 43.860 | 114 | 43 | 2 | 87 | 200 | 130 | 222 | 5.37e-21 | 88.6 |
| Msa0301830 | MtrunA17_Chr2g0311591 | 47.059 | 102 | 35 | 2 | 142 | 243 | 161 | 243 | 4.89e-20 | 86.7 |
| Msa0301830 | MtrunA17_Chr1g0186171 | 46.000 | 100 | 47 | 2 | 102 | 196 | 264 | 361 | 7.47e-20 | 87.8 |
| Msa0301830 | MtrunA17_Chr1g0168401 | 44.330 | 97 | 50 | 1 | 103 | 195 | 267 | 363 | 3.30e-19 | 85.9 |
| Msa0301830 | MtrunA17_Chr4g0030411 | 51.807 | 83 | 36 | 1 | 33 | 115 | 29 | 107 | 1.42e-17 | 76.3 |
| Msa0301830 | MtrunA17_Chr1g0147111 | 32.867 | 143 | 79 | 4 | 62 | 199 | 150 | 280 | 3.60e-16 | 75.9 |
| Msa0301830 | MtrunA17_Chr3g0126721 | 57.692 | 52 | 22 | 0 | 147 | 198 | 226 | 277 | 5.09e-15 | 72.8 |
| Msa0301830 | MtrunA17_Chr1g0150471 | 42.188 | 64 | 37 | 0 | 140 | 203 | 244 | 307 | 3.01e-11 | 62.4 |
| Msa0301830 | MtrunA17_Chr4g0072871 | 44.262 | 61 | 31 | 1 | 137 | 197 | 287 | 344 | 4.65e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301830 | AT5G59990.1 | 52.899 | 138 | 52 | 2 | 66 | 203 | 91 | 215 | 3.32e-32 | 118 |
| Msa0301830 | AT5G41380.1 | 42.135 | 178 | 74 | 6 | 72 | 243 | 151 | 305 | 1.52e-29 | 113 |
| Msa0301830 | AT1G63820.1 | 47.581 | 124 | 56 | 2 | 103 | 221 | 139 | 258 | 1.77e-27 | 107 |
| Msa0301830 | AT1G04500.3 | 35.057 | 174 | 82 | 5 | 34 | 196 | 171 | 324 | 3.20e-23 | 97.1 |
| Msa0301830 | AT1G04500.4 | 35.057 | 174 | 82 | 5 | 34 | 196 | 180 | 333 | 3.40e-23 | 97.1 |
| Msa0301830 | AT1G04500.1 | 35.057 | 174 | 82 | 5 | 34 | 196 | 180 | 333 | 3.40e-23 | 97.1 |
| Msa0301830 | AT2G33350.4 | 46.535 | 101 | 47 | 2 | 103 | 196 | 244 | 344 | 3.66e-23 | 97.4 |
| Msa0301830 | AT2G33350.2 | 46.535 | 101 | 47 | 2 | 103 | 196 | 255 | 355 | 4.27e-23 | 97.1 |
| Msa0301830 | AT2G33350.5 | 46.535 | 101 | 47 | 2 | 103 | 196 | 264 | 364 | 5.65e-23 | 97.1 |
| Msa0301830 | AT2G33350.1 | 46.078 | 102 | 47 | 3 | 103 | 196 | 255 | 356 | 7.12e-22 | 93.6 |
| Msa0301830 | AT3G12890.1 | 54.651 | 86 | 38 | 1 | 131 | 215 | 119 | 204 | 1.00e-21 | 90.9 |
| Msa0301830 | AT5G53420.2 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 4.40e-16 | 74.3 |
| Msa0301830 | AT5G53420.5 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 4.40e-16 | 74.3 |
| Msa0301830 | AT5G53420.4 | 34.884 | 129 | 68 | 4 | 68 | 195 | 70 | 183 | 4.40e-16 | 74.3 |
| Msa0301830 | AT5G53420.1 | 34.884 | 129 | 68 | 4 | 68 | 195 | 149 | 262 | 8.87e-16 | 75.1 |
| Msa0301830 | AT5G59990.2 | 45.872 | 109 | 46 | 2 | 66 | 174 | 91 | 186 | 7.31e-15 | 71.2 |
| Msa0301830 | AT4G27900.1 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.47e-14 | 71.6 |
| Msa0301830 | AT4G27900.2 | 32.787 | 122 | 59 | 3 | 100 | 198 | 140 | 261 | 1.47e-14 | 71.6 |
| Msa0301830 | AT2G24790.1 | 43.056 | 72 | 37 | 1 | 125 | 192 | 199 | 270 | 4.58e-11 | 62.0 |
| Msa0301830 | AT5G15850.1 | 45.283 | 53 | 29 | 0 | 147 | 199 | 282 | 334 | 5.80e-11 | 62.0 |
| Msa0301830 | AT5G24930.1 | 43.333 | 60 | 34 | 0 | 139 | 198 | 283 | 342 | 8.15e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCCTTCTCCATTTA+TGG | 0.057189 | 2_3:+58393326 | Msa0301830:CDS |
| CGGATAGGAGGCCACGAATT+AGG | 0.208419 | 2_3:+58395225 | Msa0301830:CDS |
| GAACTTTAACAAGAAAATTA+AGG | 0.269338 | 2_3:+58394171 | Msa0301830:CDS |
| GGATAGGAGGCCACGAATTA+GGG | 0.287165 | 2_3:+58395226 | Msa0301830:CDS |
| AGGATGAAGAAGATGAAAAT+TGG | 0.295769 | 2_3:+58395324 | Msa0301830:CDS |
| AACAAGATTTGCAGCAACTA+TGG | 0.316149 | 2_3:-58395363 | None:intergenic |
| CATTCCCTTCAGTACAATAA+TGG | 0.321357 | 2_3:+58393495 | Msa0301830:CDS |
| TCAGGGATATGTTCCATAAA+TGG | 0.329934 | 2_3:-58393339 | None:intergenic |
| TTGCAGTACCGGCGATTTGC+AGG | 0.339328 | 2_3:+58393590 | Msa0301830:CDS |
| TTTCAAGGAAGTTCTTCCTT+TGG | 0.354729 | 2_3:+58395395 | Msa0301830:CDS |
| GAGTCTAACTCATTGAAATC+AGG | 0.374546 | 2_3:-58393357 | None:intergenic |
| CTTGTTCATGATGAGTTTCA+AGG | 0.385277 | 2_3:+58395380 | Msa0301830:CDS |
| TCCTATCCGCCAATGTCTTT+CGG | 0.395899 | 2_3:-58395211 | None:intergenic |
| GAAGGAGATGGAAGAAGAAA+GGG | 0.410768 | 2_3:-58393315 | None:intergenic |
| ATGTGGCTCCACTCGACTAT+AGG | 0.414777 | 2_3:-58395284 | None:intergenic |
| TGTATTATTGAATCAAACTT+TGG | 0.418703 | 2_3:+58395661 | Msa0301830:three_prime_UTR |
| GAAAGTAGTATGATCATAGA+AGG | 0.422699 | 2_3:+58394070 | Msa0301830:CDS |
| GTTTGAGAATGGAATATTGT+TGG | 0.424526 | 2_3:-58393292 | None:intergenic |
| ATTCCCTTCAGTACAATAAT+GGG | 0.429789 | 2_3:+58393496 | Msa0301830:CDS |
| TGCATCAAGATTGGAGTACT+TGG | 0.434559 | 2_3:-58393456 | None:intergenic |
| ATGCTTCTCTGCATCAAGAT+TGG | 0.436083 | 2_3:-58393465 | None:intergenic |
| CATTGGTGGTGGGGAGGAAG+AGG | 0.451326 | 2_3:+58395304 | Msa0301830:CDS |
| AGAAGGAGATGGAAGAAGAA+AGG | 0.463165 | 2_3:-58393316 | None:intergenic |
| AGAAGAAAGGGGTTTGAGAA+TGG | 0.471555 | 2_3:-58393303 | None:intergenic |
| GAGTGGAGCCACATTGGTGG+TGG | 0.477837 | 2_3:+58395293 | Msa0301830:CDS |
| GTGAGGAAAGTTTGCAGTAC+CGG | 0.479206 | 2_3:+58393579 | Msa0301830:CDS |
| TTGAAAGATACAGAAGAAAG+AGG | 0.482706 | 2_3:+58394140 | Msa0301830:CDS |
| AATGAAATGTCAAGTGTGTA+TGG | 0.491009 | 2_3:-58393184 | None:intergenic |
| AGTGGAGCCACATTGGTGGT+GGG | 0.516680 | 2_3:+58395294 | Msa0301830:CDS |
| GCAAAACGTCCCCTAATTCG+TGG | 0.520615 | 2_3:-58395236 | None:intergenic |
| GCTCGACTCAGACGATGCTC+CGG | 0.525201 | 2_3:+58393557 | Msa0301830:CDS |
| AGCAGTGGCTATAGCAGCTA+TGG | 0.525220 | 2_3:+58393420 | Msa0301830:CDS |
| AGTCTAACTCATTGAAATCA+GGG | 0.536173 | 2_3:-58393356 | None:intergenic |
| GAGTCCCATTATTGTACTGA+AGG | 0.542232 | 2_3:-58393500 | None:intergenic |
| GTCGAGTGGAGCCACATTGG+TGG | 0.548825 | 2_3:+58395290 | Msa0301830:CDS |
| GCCGAAAGACATTGGCGGAT+AGG | 0.550818 | 2_3:+58395210 | Msa0301830:CDS |
| ACAGAAGAAAGAGGAATCAG+AGG | 0.553930 | 2_3:+58394149 | Msa0301830:CDS |
| GTATGTTTGCCGAAAGACAT+TGG | 0.562441 | 2_3:+58395202 | Msa0301830:intron |
| GAGCCACATTGGTGGTGGGG+AGG | 0.566927 | 2_3:+58395298 | Msa0301830:CDS |
| GAAAGACATTGGCGGATAGG+AGG | 0.570627 | 2_3:+58395213 | Msa0301830:CDS |
| TCCATAAATGGAGAAGGAGA+TGG | 0.571408 | 2_3:-58393327 | None:intergenic |
| GTGGAGCCACATTGGTGGTG+GGG | 0.572282 | 2_3:+58395295 | Msa0301830:CDS |
| AAGGAGATGGAAGAAGAAAG+GGG | 0.573099 | 2_3:-58393314 | None:intergenic |
| TCAACTCCGAGTTATTCAGC+TGG | 0.581544 | 2_3:-58393398 | None:intergenic |
| TCAGCTGGGAGAGAGTGTCT+TGG | 0.586821 | 2_3:-58393383 | None:intergenic |
| ATACTACTTTCACTAGACAA+TGG | 0.602525 | 2_3:-58394058 | None:intergenic |
| AAGATTGGAGTACTTGGAGA+AGG | 0.605160 | 2_3:-58393450 | None:intergenic |
| CAACTCCGAGTTATTCAGCT+GGG | 0.608456 | 2_3:-58393397 | None:intergenic |
| CTTCCTCCCCACCACCAATG+TGG | 0.613096 | 2_3:-58395301 | None:intergenic |
| ATATGTTCCATAAATGGAGA+AGG | 0.614198 | 2_3:-58393333 | None:intergenic |
| GTACTGCAAACTTTCCTCAC+CGG | 0.616956 | 2_3:-58393576 | None:intergenic |
| AGTCCCATTATTGTACTGAA+GGG | 0.624751 | 2_3:-58393499 | None:intergenic |
| AGTGGCTATAGCAGCTATGG+TGG | 0.633412 | 2_3:+58393423 | Msa0301830:CDS |
| ATTCTAATATAATAGACCAA+AGG | 0.637951 | 2_3:-58395411 | None:intergenic |
| GATAGGAGGCCACGAATTAG+GGG | 0.642140 | 2_3:+58395227 | Msa0301830:CDS |
| ATAGTGTACCTGCAAATCGC+CGG | 0.645719 | 2_3:-58393598 | None:intergenic |
| TTTCAAAGTATTATTGTACG+TGG | 0.651054 | 2_3:+58395482 | Msa0301830:three_prime_UTR |
| ATAGTCGAGTGGAGCCACAT+TGG | 0.657395 | 2_3:+58395287 | Msa0301830:CDS |
| TCTCTCCCAGCTGAATAACT+CGG | 0.662391 | 2_3:+58393392 | Msa0301830:CDS |
| ATAAGAAACCTATAGTCGAG+TGG | 0.670337 | 2_3:+58395276 | Msa0301830:CDS |
| ACTCAGACGATGCTCCGGTG+AGG | 0.675434 | 2_3:+58393562 | Msa0301830:CDS |
| AATAACTCGGAGTTGAGCAG+TGG | 0.681830 | 2_3:+58393405 | Msa0301830:CDS |
| TGTTTGCCGAAAGACATTGG+CGG | 0.695673 | 2_3:+58395205 | Msa0301830:CDS |
| GCAACATAATCATTATCACG+TGG | 0.744787 | 2_3:+58394030 | Msa0301830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATTTTTAATTTTTTTG+CGG | - | chr2_3:58393812-58393831 | None:intergenic | 10.0% |
| !!! | TATTTAAGAATGTTTTTTTA+AGG | + | chr2_3:58393944-58393963 | Msa0301830:intron | 10.0% |
| !!! | ATTTAAGAATGTTTTTTTAA+GGG | + | chr2_3:58393945-58393964 | Msa0301830:intron | 10.0% |
| !!! | TATATTGTTGTTATTAATAA+GGG | - | chr2_3:58394832-58394851 | None:intergenic | 10.0% |
| !!! | CGTTAAACTTTTTTTTTTTT+TGG | + | chr2_3:58393683-58393702 | Msa0301830:intron | 15.0% |
| !! | TTAAAAAAACTATGAATTTG+TGG | - | chr2_3:58393777-58393796 | None:intergenic | 15.0% |
| !!! | TTGAAAAACATTTTTTTTTG+CGG | - | chr2_3:58393840-58393859 | None:intergenic | 15.0% |
| !!! | GAGTATATTGTTATTAATAA+GGG | - | chr2_3:58394795-58394814 | None:intergenic | 15.0% |
| !!! | GTATATTGTTGTTATTAATA+AGG | - | chr2_3:58394833-58394852 | None:intergenic | 15.0% |
| !!! | TTTTATTCCTTCAAAAAAAA+TGG | + | chr2_3:58394880-58394899 | Msa0301830:intron | 15.0% |
| !! | GAACTTTAACAAGAAAATTA+AGG | + | chr2_3:58394171-58394190 | Msa0301830:CDS | 20.0% |
| !! | TTAGTGTATGAAAGTTAAAT+TGG | - | chr2_3:58394305-58394324 | None:intergenic | 20.0% |
| !! | ATAAAAAGAACAAGAAGTAA+TGG | + | chr2_3:58394343-58394362 | Msa0301830:intron | 20.0% |
| !! | TGATAGAAAATTTCATAAAG+GGG | - | chr2_3:58394407-58394426 | None:intergenic | 20.0% |
| !! | GTGATAGAAAATTTCATAAA+GGG | - | chr2_3:58394408-58394427 | None:intergenic | 20.0% |
| !! | AGTGATAGAAAATTTCATAA+AGG | - | chr2_3:58394409-58394428 | None:intergenic | 20.0% |
| !! | TGGTGAAAAAATAAATTCAT+TGG | + | chr2_3:58394484-58394503 | Msa0301830:intron | 20.0% |
| !!! | GGAGTATATTGTTATTAATA+AGG | - | chr2_3:58394796-58394815 | None:intergenic | 20.0% |
| !! | TACAAATTATTGTCATATAG+TGG | + | chr2_3:58395063-58395082 | Msa0301830:intron | 20.0% |
| !! | ATTCTAATATAATAGACCAA+AGG | - | chr2_3:58395414-58395433 | None:intergenic | 20.0% |
| !! | AAGTCCTATAAAAAGATATA+GGG | - | chr2_3:58395624-58395643 | None:intergenic | 20.0% |
| !! | TAAGTCCTATAAAAAGATAT+AGG | - | chr2_3:58395625-58395644 | None:intergenic | 20.0% |
| !! | TGTATTATTGAATCAAACTT+TGG | + | chr2_3:58395661-58395680 | Msa0301830:three_prime_UTR | 20.0% |
| !!! | TCGCATTTTAATAATTTTGG+AGG | + | chr2_3:58393648-58393667 | Msa0301830:intron | 25.0% |
| ! | AAAACTTTGTGCATTTCTTT+AGG | - | chr2_3:58393885-58393904 | None:intergenic | 25.0% |
| !!! | TGAATTTATTTTTTCACCAG+TGG | - | chr2_3:58394483-58394502 | None:intergenic | 25.0% |
| ! | AACTAATTACGCATGTATAA+GGG | - | chr2_3:58394521-58394540 | None:intergenic | 25.0% |
| ! | TAACTAATTACGCATGTATA+AGG | - | chr2_3:58394522-58394541 | None:intergenic | 25.0% |
| ! | ATACATGTACACTATGAATT+TGG | - | chr2_3:58394857-58394876 | None:intergenic | 25.0% |
| !!! | ACAGTATCCATTTTTTTTGA+AGG | - | chr2_3:58394890-58394909 | None:intergenic | 25.0% |
| !!! | ATACTGTTTATTGATTCTAG+TGG | + | chr2_3:58394903-58394922 | Msa0301830:intron | 25.0% |
| ! | CCTAAATAGTAGTATAATGA+TGG | - | chr2_3:58394930-58394949 | None:intergenic | 25.0% |
| ! | CCATCATTATACTACTATTT+AGG | + | chr2_3:58394927-58394946 | Msa0301830:intron | 25.0% |
| ! | AATTTGTACTAAATAGCGTA+TGG | - | chr2_3:58395051-58395070 | None:intergenic | 25.0% |
| !! | TTTCAAAGTATTATTGTACG+TGG | + | chr2_3:58395482-58395501 | Msa0301830:three_prime_UTR | 25.0% |
| !! | ATCTCTAAAAACTGCATATA+TGG | - | chr2_3:58395577-58395596 | None:intergenic | 25.0% |
| AATGAAATGTCAAGTGTGTA+TGG | - | chr2_3:58393187-58393206 | None:intergenic | 30.0% | |
| GTTTGAGAATGGAATATTGT+TGG | - | chr2_3:58393295-58393314 | None:intergenic | 30.0% | |
| ATATGTTCCATAAATGGAGA+AGG | - | chr2_3:58393336-58393355 | None:intergenic | 30.0% | |
| AGTCTAACTCATTGAAATCA+GGG | - | chr2_3:58393359-58393378 | None:intergenic | 30.0% | |
| ATTCCCTTCAGTACAATAAT+GGG | + | chr2_3:58393496-58393515 | Msa0301830:CDS | 30.0% | |
| !!! | ATTGTTTTAGATTGCAGTTG+CGG | + | chr2_3:58393625-58393644 | Msa0301830:intron | 30.0% |
| !! | CGGTCGCATTTTAATAATTT+TGG | + | chr2_3:58393645-58393664 | Msa0301830:intron | 30.0% |
| ATACTACTTTCACTAGACAA+TGG | - | chr2_3:58394061-58394080 | None:intergenic | 30.0% | |
| GAAAGTAGTATGATCATAGA+AGG | + | chr2_3:58394070-58394089 | Msa0301830:CDS | 30.0% | |
| ! | TTCTCACTTTCTTTTCTTCT+GGG | - | chr2_3:58394120-58394139 | None:intergenic | 30.0% |
| ! | ATTCTCACTTTCTTTTCTTC+TGG | - | chr2_3:58394121-58394140 | None:intergenic | 30.0% |
| TTGAAAGATACAGAAGAAAG+AGG | + | chr2_3:58394140-58394159 | Msa0301830:CDS | 30.0% | |
| CAAAGAGGAAAATAAATGCA+TGG | + | chr2_3:58394377-58394396 | Msa0301830:intron | 30.0% | |
| CTAAAAGACACTTCAAATCA+TGG | - | chr2_3:58394627-58394646 | None:intergenic | 30.0% | |
| ! | AATAAGGGCATGTATGAATT+TGG | - | chr2_3:58394817-58394836 | None:intergenic | 30.0% |
| AACTCGATTAGAATATTGAC+CGG | + | chr2_3:58394957-58394976 | Msa0301830:intron | 30.0% | |
| !! | AGCGTTATAGCATTTTAGTA+CGG | + | chr2_3:58395093-58395112 | Msa0301830:intron | 30.0% |
| AGGATGAAGAAGATGAAAAT+TGG | + | chr2_3:58395324-58395343 | Msa0301830:CDS | 30.0% | |
| !! | CAGTTTTTAGAGATCAATCA+GGG | + | chr2_3:58395583-58395602 | Msa0301830:three_prime_UTR | 30.0% |
| !! | AGTTTTTAGAGATCAATCAG+GGG | + | chr2_3:58395584-58395603 | Msa0301830:three_prime_UTR | 30.0% |
| ! | AGTGCCCTATATCTTTTTAT+AGG | + | chr2_3:58395617-58395636 | Msa0301830:three_prime_UTR | 30.0% |
| TCAGGGATATGTTCCATAAA+TGG | - | chr2_3:58393342-58393361 | None:intergenic | 35.0% | |
| GAGTCTAACTCATTGAAATC+AGG | - | chr2_3:58393360-58393379 | None:intergenic | 35.0% | |
| CATTCCCTTCAGTACAATAA+TGG | + | chr2_3:58393495-58393514 | Msa0301830:CDS | 35.0% | |
| AGTCCCATTATTGTACTGAA+GGG | - | chr2_3:58393502-58393521 | None:intergenic | 35.0% | |
| GAGCAATTCAGCAAAAAAAG+CGG | - | chr2_3:58393541-58393560 | None:intergenic | 35.0% | |
| TTGTGGTTATGCTGCAATTA+AGG | - | chr2_3:58393760-58393779 | None:intergenic | 35.0% | |
| ! | CGTTTTTCACAGAGGATTAA+CGG | + | chr2_3:58394004-58394023 | Msa0301830:intron | 35.0% |
| GCAACATAATCATTATCACG+TGG | + | chr2_3:58394030-58394049 | Msa0301830:CDS | 35.0% | |
| ! | TTCTTTTCTTCTGGGCTATA+TGG | - | chr2_3:58394112-58394131 | None:intergenic | 35.0% |
| ATGGACAAAACTGTACAAAG+AGG | + | chr2_3:58394362-58394381 | Msa0301830:intron | 35.0% | |
| TAGTCAGTGTATATAGCAAC+AGG | + | chr2_3:58394644-58394663 | Msa0301830:intron | 35.0% | |
| ! | AACAGGTTCAGAATTTTGTG+AGG | + | chr2_3:58394661-58394680 | Msa0301830:intron | 35.0% |
| GAGGTGTGAAAATCTTCTTA+CGG | + | chr2_3:58394680-58394699 | Msa0301830:intron | 35.0% | |
| ! | TTGTTATTAATAAGGGCGTG+TGG | - | chr2_3:58394788-58394807 | None:intergenic | 35.0% |
| GCTAATTGCTATAACTGGTT+TGG | - | chr2_3:58394988-58395007 | None:intergenic | 35.0% | |
| ! | GTGTTGCTAATTGCTATAAC+TGG | - | chr2_3:58394993-58395012 | None:intergenic | 35.0% |
| !! | GTTATAGCATTTTAGTACGG+TGG | + | chr2_3:58395096-58395115 | Msa0301830:intron | 35.0% |
| ATAAGAAACCTATAGTCGAG+TGG | + | chr2_3:58395276-58395295 | Msa0301830:CDS | 35.0% | |
| AACAAGATTTGCAGCAACTA+TGG | - | chr2_3:58395366-58395385 | None:intergenic | 35.0% | |
| CTTGTTCATGATGAGTTTCA+AGG | + | chr2_3:58395380-58395399 | Msa0301830:CDS | 35.0% | |
| TTTCAAGGAAGTTCTTCCTT+TGG | + | chr2_3:58395395-58395414 | Msa0301830:CDS | 35.0% | |
| !! | GCAGTTTTTAGAGATCAATC+AGG | + | chr2_3:58395582-58395601 | Msa0301830:three_prime_UTR | 35.0% |
| AGAAGAAAGGGGTTTGAGAA+TGG | - | chr2_3:58393306-58393325 | None:intergenic | 40.0% | |
| AAGGAGATGGAAGAAGAAAG+GGG | - | chr2_3:58393317-58393336 | None:intergenic | 40.0% | |
| GAAGGAGATGGAAGAAGAAA+GGG | - | chr2_3:58393318-58393337 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAAGAAGAA+AGG | - | chr2_3:58393319-58393338 | None:intergenic | 40.0% | |
| TCCATCTCCTTCTCCATTTA+TGG | + | chr2_3:58393326-58393345 | Msa0301830:CDS | 40.0% | |
| TCCATAAATGGAGAAGGAGA+TGG | - | chr2_3:58393330-58393349 | None:intergenic | 40.0% | |
| ! | AAGATTGGAGTACTTGGAGA+AGG | - | chr2_3:58393453-58393472 | None:intergenic | 40.0% |
| ! | TGCATCAAGATTGGAGTACT+TGG | - | chr2_3:58393459-58393478 | None:intergenic | 40.0% |
| ATGCTTCTCTGCATCAAGAT+TGG | - | chr2_3:58393468-58393487 | None:intergenic | 40.0% | |
| GAGTCCCATTATTGTACTGA+AGG | - | chr2_3:58393503-58393522 | None:intergenic | 40.0% | |
| TTCAGCAAAAAAAGCGGAGA+GGG | - | chr2_3:58393535-58393554 | None:intergenic | 40.0% | |
| ATTCAGCAAAAAAAGCGGAG+AGG | - | chr2_3:58393536-58393555 | None:intergenic | 40.0% | |
| TGCATTTCTTTAGGTACGCT+TGG | - | chr2_3:58393876-58393895 | None:intergenic | 40.0% | |
| ! | TCATGCAACGTTTTTCACAG+AGG | + | chr2_3:58393996-58394015 | Msa0301830:intron | 40.0% |
| ACAGAAGAAAGAGGAATCAG+AGG | + | chr2_3:58394149-58394168 | Msa0301830:CDS | 40.0% | |
| CTTGGAGAACAGAATCAATC+AGG | + | chr2_3:58394751-58394770 | Msa0301830:intron | 40.0% | |
| !! | TATAACTGGTTTGGCAACAC+CGG | - | chr2_3:58394979-58394998 | None:intergenic | 40.0% |
| GTATGTTTGCCGAAAGACAT+TGG | + | chr2_3:58395202-58395221 | Msa0301830:intron | 40.0% | |
| TCTCTCCCAGCTGAATAACT+CGG | + | chr2_3:58393392-58393411 | Msa0301830:CDS | 45.0% | |
| CAACTCCGAGTTATTCAGCT+GGG | - | chr2_3:58393400-58393419 | None:intergenic | 45.0% | |
| TCAACTCCGAGTTATTCAGC+TGG | - | chr2_3:58393401-58393420 | None:intergenic | 45.0% | |
| AATAACTCGGAGTTGAGCAG+TGG | + | chr2_3:58393405-58393424 | Msa0301830:CDS | 45.0% | |
| AAAAAGCGGAGAGGGGATAA+TGG | - | chr2_3:58393527-58393546 | None:intergenic | 45.0% | |
| TCAGCAAAAAAAGCGGAGAG+GGG | - | chr2_3:58393534-58393553 | None:intergenic | 45.0% | |
| GTACTGCAAACTTTCCTCAC+CGG | - | chr2_3:58393579-58393598 | None:intergenic | 45.0% | |
| GTGAGGAAAGTTTGCAGTAC+CGG | + | chr2_3:58393579-58393598 | Msa0301830:CDS | 45.0% | |
| ATAGTGTACCTGCAAATCGC+CGG | - | chr2_3:58393601-58393620 | None:intergenic | 45.0% | |
| CTCCATTCCTGTCAAGATCT+TGG | + | chr2_3:58394733-58394752 | Msa0301830:intron | 45.0% | |
| CTCCAAGATCTTGACAGGAA+TGG | - | chr2_3:58394738-58394757 | None:intergenic | 45.0% | |
| CTGTTCTCCAAGATCTTGAC+AGG | - | chr2_3:58394743-58394762 | None:intergenic | 45.0% | |
| TGTTTGCCGAAAGACATTGG+CGG | + | chr2_3:58395205-58395224 | Msa0301830:CDS | 45.0% | |
| TCCTATCCGCCAATGTCTTT+CGG | - | chr2_3:58395214-58395233 | None:intergenic | 45.0% | |
| AGCAGTGGCTATAGCAGCTA+TGG | + | chr2_3:58393420-58393439 | Msa0301830:CDS | 50.0% | |
| AGTGGCTATAGCAGCTATGG+TGG | + | chr2_3:58393423-58393442 | Msa0301830:CDS | 50.0% | |
| CTTATGCATGCTACCTCCAC+AGG | + | chr2_3:58394448-58394467 | Msa0301830:intron | 50.0% | |
| ! | GAAAGACATTGGCGGATAGG+AGG | + | chr2_3:58395213-58395232 | Msa0301830:CDS | 50.0% |
| GGATAGGAGGCCACGAATTA+GGG | + | chr2_3:58395226-58395245 | Msa0301830:CDS | 50.0% | |
| GATAGGAGGCCACGAATTAG+GGG | + | chr2_3:58395227-58395246 | Msa0301830:CDS | 50.0% | |
| GCAAAACGTCCCCTAATTCG+TGG | - | chr2_3:58395239-58395258 | None:intergenic | 50.0% | |
| ATGTGGCTCCACTCGACTAT+AGG | - | chr2_3:58395287-58395306 | None:intergenic | 50.0% | |
| ATAGTCGAGTGGAGCCACAT+TGG | + | chr2_3:58395287-58395306 | Msa0301830:CDS | 50.0% | |
| !! | TCAGCTGGGAGAGAGTGTCT+TGG | - | chr2_3:58393386-58393405 | None:intergenic | 55.0% |
| !! | TTGCAGTACCGGCGATTTGC+AGG | + | chr2_3:58393590-58393609 | Msa0301830:CDS | 55.0% |
| ! | GCCGAAAGACATTGGCGGAT+AGG | + | chr2_3:58395210-58395229 | Msa0301830:CDS | 55.0% |
| CGGATAGGAGGCCACGAATT+AGG | + | chr2_3:58395225-58395244 | Msa0301830:CDS | 55.0% | |
| ! | AGTGGAGCCACATTGGTGGT+GGG | + | chr2_3:58395294-58395313 | Msa0301830:CDS | 55.0% |
| GCTCGACTCAGACGATGCTC+CGG | + | chr2_3:58393557-58393576 | Msa0301830:CDS | 60.0% | |
| ACTCAGACGATGCTCCGGTG+AGG | + | chr2_3:58393562-58393581 | Msa0301830:CDS | 60.0% | |
| GTGGCAGTGTCTACCTGTGG+AGG | - | chr2_3:58394464-58394483 | None:intergenic | 60.0% | |
| CCAGTGGCAGTGTCTACCTG+TGG | - | chr2_3:58394467-58394486 | None:intergenic | 60.0% | |
| CCACAGGTAGACACTGCCAC+TGG | + | chr2_3:58394464-58394483 | Msa0301830:intron | 60.0% | |
| GTCGAGTGGAGCCACATTGG+TGG | + | chr2_3:58395290-58395309 | Msa0301830:CDS | 60.0% | |
| GAGTGGAGCCACATTGGTGG+TGG | + | chr2_3:58395293-58395312 | Msa0301830:CDS | 60.0% | |
| !! | GTGGAGCCACATTGGTGGTG+GGG | + | chr2_3:58395295-58395314 | Msa0301830:CDS | 60.0% |
| CTTCCTCCCCACCACCAATG+TGG | - | chr2_3:58395304-58395323 | None:intergenic | 60.0% | |
| !! | CATTGGTGGTGGGGAGGAAG+AGG | + | chr2_3:58395304-58395323 | Msa0301830:CDS | 60.0% |
| !! | GAGCCACATTGGTGGTGGGG+AGG | + | chr2_3:58395298-58395317 | Msa0301830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 58393135 | 58395719 | 58393135 | ID=Msa0301830;Name=Msa0301830 |
| chr2_3 | mRNA | 58393135 | 58395719 | 58393135 | ID=Msa0301830-mRNA-1;Parent=Msa0301830;Name=Msa0301830-mRNA-1;_AED=0.17;_eAED=0.17;_QI=138|1|1|1|1|1|3|289|247 |
| chr2_3 | exon | 58393135 | 58393611 | 58393135 | ID=Msa0301830-mRNA-1:exon:18843;Parent=Msa0301830-mRNA-1 |
| chr2_3 | exon | 58394016 | 58394192 | 58394016 | ID=Msa0301830-mRNA-1:exon:18844;Parent=Msa0301830-mRNA-1 |
| chr2_3 | exon | 58395203 | 58395719 | 58395203 | ID=Msa0301830-mRNA-1:exon:18845;Parent=Msa0301830-mRNA-1 |
| chr2_3 | five_prime_UTR | 58393135 | 58393272 | 58393135 | ID=Msa0301830-mRNA-1:five_prime_utr;Parent=Msa0301830-mRNA-1 |
| chr2_3 | CDS | 58393273 | 58393611 | 58393273 | ID=Msa0301830-mRNA-1:cds;Parent=Msa0301830-mRNA-1 |
| chr2_3 | CDS | 58394016 | 58394192 | 58394016 | ID=Msa0301830-mRNA-1:cds;Parent=Msa0301830-mRNA-1 |
| chr2_3 | CDS | 58395203 | 58395430 | 58395203 | ID=Msa0301830-mRNA-1:cds;Parent=Msa0301830-mRNA-1 |
| chr2_3 | three_prime_UTR | 58395431 | 58395719 | 58395431 | ID=Msa0301830-mRNA-1:three_prime_utr;Parent=Msa0301830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
