Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305420 | XP_039685450.1 | 71.383 | 311 | 63 | 6 | 1 | 287 | 1 | 309 | 5.09e-145 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305420 | sp|Q9T072|BH025_ARATH | 38.660 | 194 | 95 | 5 | 104 | 274 | 129 | 321 | 1.27e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305420 | G7IMB7 | 68.475 | 295 | 9 | 7 | 14 | 287 | 1 | 232 | 2.88e-121 | 355 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0305420 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305420 | MtrunA17_Chr2g0333541 | 62.457 | 293 | 72 | 6 | 15 | 286 | 1 | 276 | 1.17e-103 | 303 |
| Msa0305420 | MtrunA17_Chr8g0368371 | 80.986 | 142 | 22 | 3 | 15 | 153 | 1 | 140 | 6.30e-73 | 220 |
| Msa0305420 | MtrunA17_Chr2g0333621 | 37.224 | 317 | 147 | 10 | 3 | 276 | 2 | 309 | 4.48e-46 | 157 |
| Msa0305420 | MtrunA17_Chr4g0002801 | 34.431 | 334 | 155 | 11 | 1 | 276 | 1 | 328 | 4.09e-43 | 150 |
| Msa0305420 | MtrunA17_Chr2g0333641 | 35.873 | 315 | 150 | 12 | 3 | 276 | 2 | 305 | 6.58e-41 | 144 |
| Msa0305420 | MtrunA17_Chr8g0336681 | 37.179 | 234 | 112 | 3 | 76 | 274 | 98 | 331 | 9.11e-39 | 139 |
| Msa0305420 | MtrunA17_Chr4g0002781 | 37.083 | 240 | 105 | 6 | 76 | 276 | 115 | 347 | 3.72e-36 | 132 |
| Msa0305420 | MtrunA17_Chr5g0400621 | 40.741 | 189 | 87 | 4 | 110 | 277 | 144 | 328 | 6.25e-35 | 128 |
| Msa0305420 | MtrunA17_Chr5g0400661 | 38.579 | 197 | 86 | 5 | 114 | 276 | 137 | 332 | 5.46e-32 | 120 |
| Msa0305420 | MtrunA17_Chr5g0400641 | 37.975 | 158 | 86 | 3 | 128 | 280 | 1 | 151 | 8.14e-30 | 110 |
| Msa0305420 | MtrunA17_Chr7g0249811 | 31.532 | 333 | 157 | 9 | 3 | 274 | 2 | 324 | 2.56e-29 | 114 |
| Msa0305420 | MtrunA17_Chr2g0280161 | 35.632 | 174 | 92 | 3 | 121 | 274 | 173 | 346 | 7.53e-28 | 110 |
| Msa0305420 | MtrunA17_Chr4g0049331 | 36.683 | 199 | 103 | 4 | 103 | 278 | 109 | 307 | 9.31e-28 | 108 |
| Msa0305420 | MtrunA17_Chr4g0054571 | 30.476 | 315 | 164 | 10 | 1 | 275 | 27 | 326 | 1.65e-27 | 108 |
| Msa0305420 | MtrunA17_Chr2g0333611 | 33.690 | 187 | 103 | 3 | 107 | 274 | 27 | 211 | 2.17e-27 | 105 |
| Msa0305420 | MtrunA17_Chr4g0054581 | 34.826 | 201 | 107 | 4 | 101 | 277 | 173 | 373 | 1.12e-26 | 107 |
| Msa0305420 | MtrunA17_Chr4g0033391 | 32.068 | 237 | 127 | 6 | 58 | 276 | 94 | 314 | 1.36e-26 | 106 |
| Msa0305420 | MtrunA17_Chr5g0400671 | 35.417 | 192 | 102 | 3 | 108 | 280 | 137 | 325 | 1.42e-26 | 106 |
| Msa0305420 | MtrunA17_Chr4g0054561 | 35.676 | 185 | 84 | 6 | 118 | 276 | 148 | 323 | 1.65e-26 | 106 |
| Msa0305420 | MtrunA17_Chr4g0033281 | 28.615 | 325 | 171 | 8 | 1 | 277 | 9 | 320 | 2.41e-26 | 105 |
| Msa0305420 | MtrunA17_Chr4g0033291 | 30.822 | 292 | 165 | 8 | 4 | 276 | 49 | 322 | 9.02e-26 | 103 |
| Msa0305420 | MtrunA17_Chr2g0307141 | 34.706 | 170 | 90 | 3 | 125 | 274 | 183 | 351 | 4.80e-24 | 99.8 |
| Msa0305420 | MtrunA17_Chr2g0307131 | 32.821 | 195 | 109 | 4 | 101 | 274 | 154 | 347 | 3.39e-23 | 97.4 |
| Msa0305420 | MtrunA17_Chr7g0225901 | 36.301 | 146 | 88 | 3 | 113 | 254 | 76 | 220 | 3.06e-22 | 93.2 |
| Msa0305420 | MtrunA17_Chr6g0468491 | 29.492 | 295 | 166 | 12 | 17 | 277 | 22 | 308 | 5.08e-22 | 93.6 |
| Msa0305420 | MtrunA17_Chr4g0054551 | 32.973 | 185 | 89 | 6 | 118 | 276 | 148 | 323 | 1.09e-21 | 92.8 |
| Msa0305420 | MtrunA17_Chr4g0054621 | 30.882 | 204 | 112 | 6 | 96 | 277 | 140 | 336 | 1.27e-20 | 90.1 |
| Msa0305420 | MtrunA17_Chr4g0002831 | 34.884 | 172 | 83 | 6 | 128 | 280 | 45 | 206 | 1.54e-18 | 82.0 |
| Msa0305420 | MtrunA17_Chr4g0002851 | 33.929 | 168 | 79 | 4 | 129 | 280 | 47 | 198 | 6.41e-18 | 80.1 |
| Msa0305420 | MtrunA17_Chr6g0468461 | 35.897 | 156 | 84 | 4 | 101 | 253 | 148 | 290 | 2.31e-17 | 80.9 |
| Msa0305420 | MtrunA17_Chr7g0233441 | 31.176 | 170 | 86 | 5 | 129 | 280 | 42 | 198 | 2.49e-16 | 75.9 |
| Msa0305420 | MtrunA17_Chr5g0411341 | 24.074 | 162 | 104 | 2 | 115 | 257 | 483 | 644 | 1.80e-12 | 67.4 |
| Msa0305420 | MtrunA17_Chr7g0275821 | 26.241 | 141 | 93 | 2 | 122 | 259 | 249 | 381 | 7.50e-12 | 65.1 |
| Msa0305420 | MtrunA17_Chr1g0185621 | 23.590 | 195 | 127 | 5 | 93 | 275 | 448 | 632 | 1.81e-11 | 64.3 |
| Msa0305420 | MtrunA17_Chr8g0365711 | 26.957 | 230 | 134 | 9 | 56 | 258 | 163 | 385 | 2.42e-11 | 63.5 |
| Msa0305420 | MtrunA17_Chr8g0346161 | 23.077 | 169 | 115 | 4 | 115 | 273 | 280 | 443 | 7.29e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305420 | AT4G37850.2 | 38.660 | 194 | 95 | 5 | 104 | 274 | 129 | 321 | 1.29e-28 | 112 |
| Msa0305420 | AT4G37850.1 | 38.660 | 194 | 95 | 5 | 104 | 274 | 129 | 321 | 1.29e-28 | 112 |
| Msa0305420 | AT2G22750.1 | 40.331 | 181 | 82 | 3 | 117 | 273 | 118 | 296 | 2.24e-26 | 105 |
| Msa0305420 | AT2G22750.4 | 40.331 | 181 | 82 | 3 | 117 | 273 | 146 | 324 | 2.37e-26 | 106 |
| Msa0305420 | AT2G22750.2 | 45.395 | 152 | 71 | 2 | 117 | 258 | 118 | 267 | 2.66e-26 | 105 |
| Msa0305420 | AT2G22750.5 | 45.395 | 152 | 71 | 2 | 117 | 258 | 142 | 291 | 3.37e-26 | 105 |
| Msa0305420 | AT2G22750.3 | 45.395 | 152 | 71 | 2 | 117 | 258 | 146 | 295 | 3.41e-26 | 105 |
| Msa0305420 | AT2G22760.1 | 29.091 | 220 | 133 | 6 | 80 | 276 | 74 | 293 | 1.13e-19 | 87.0 |
| Msa0305420 | AT2G22770.1 | 30.645 | 186 | 95 | 3 | 125 | 276 | 132 | 317 | 1.85e-18 | 84.3 |
| Msa0305420 | AT2G22760.2 | 28.889 | 180 | 122 | 2 | 80 | 253 | 74 | 253 | 2.26e-18 | 83.6 |
| Msa0305420 | AT5G46760.1 | 28.378 | 148 | 94 | 3 | 122 | 257 | 412 | 559 | 2.77e-15 | 76.3 |
| Msa0305420 | AT4G09820.1 | 33.793 | 145 | 75 | 4 | 113 | 256 | 351 | 475 | 5.01e-15 | 75.5 |
| Msa0305420 | AT4G17880.1 | 26.500 | 200 | 119 | 6 | 80 | 257 | 363 | 556 | 7.67e-15 | 75.1 |
| Msa0305420 | AT4G29930.2 | 25.269 | 186 | 117 | 5 | 83 | 259 | 11 | 183 | 1.30e-13 | 68.9 |
| Msa0305420 | AT1G32640.1 | 28.289 | 152 | 100 | 3 | 115 | 257 | 442 | 593 | 1.34e-13 | 71.2 |
| Msa0305420 | AT4G29930.6 | 27.322 | 183 | 120 | 5 | 83 | 259 | 11 | 186 | 1.53e-13 | 68.9 |
| Msa0305420 | AT4G29930.5 | 25.269 | 186 | 117 | 5 | 83 | 259 | 11 | 183 | 1.91e-13 | 68.9 |
| Msa0305420 | AT5G57150.5 | 23.810 | 189 | 130 | 3 | 83 | 258 | 12 | 199 | 2.34e-13 | 68.2 |
| Msa0305420 | AT5G57150.1 | 23.810 | 189 | 130 | 3 | 83 | 258 | 12 | 199 | 4.00e-13 | 68.2 |
| Msa0305420 | AT4G29930.1 | 24.257 | 202 | 128 | 5 | 83 | 259 | 11 | 212 | 5.39e-13 | 67.8 |
| Msa0305420 | AT4G29930.3 | 24.257 | 202 | 128 | 5 | 83 | 259 | 11 | 212 | 8.86e-13 | 67.4 |
| Msa0305420 | AT4G29930.7 | 24.257 | 202 | 128 | 5 | 83 | 259 | 11 | 212 | 8.86e-13 | 67.4 |
| Msa0305420 | AT5G57150.3 | 23.729 | 177 | 121 | 3 | 95 | 258 | 25 | 200 | 5.47e-12 | 64.3 |
| Msa0305420 | AT5G57150.2 | 23.729 | 177 | 121 | 3 | 95 | 258 | 25 | 200 | 6.02e-12 | 64.3 |
| Msa0305420 | AT2G46510.1 | 30.172 | 116 | 66 | 3 | 115 | 230 | 385 | 485 | 8.51e-12 | 65.9 |
| Msa0305420 | AT5G57150.4 | 23.729 | 177 | 121 | 3 | 95 | 258 | 25 | 200 | 1.10e-11 | 64.3 |
| Msa0305420 | AT5G41315.3 | 27.673 | 159 | 83 | 4 | 122 | 251 | 443 | 598 | 1.68e-11 | 65.1 |
| Msa0305420 | AT5G41315.2 | 27.673 | 159 | 83 | 4 | 122 | 251 | 446 | 601 | 1.68e-11 | 65.1 |
| Msa0305420 | AT1G63650.3 | 27.632 | 152 | 87 | 2 | 122 | 251 | 402 | 552 | 1.74e-11 | 64.7 |
| Msa0305420 | AT1G63650.1 | 27.632 | 152 | 87 | 2 | 122 | 251 | 402 | 552 | 1.74e-11 | 64.7 |
| Msa0305420 | AT1G63650.2 | 27.632 | 152 | 87 | 2 | 122 | 251 | 402 | 552 | 1.74e-11 | 64.7 |
| Msa0305420 | AT5G41315.1 | 27.673 | 159 | 83 | 4 | 122 | 251 | 438 | 593 | 1.74e-11 | 64.7 |
Find 52 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTGAAGTGAGGGTTCT+AGG | 0.256835 | 2_3:-63061359 | Msa0305420:CDS |
| ACTAGGCCAGTTGTGAAAAT+AGG | 0.274393 | 2_3:+63062014 | None:intergenic |
| TGGCACTGTCATTGTAATTA+AGG | 0.295958 | 2_3:+63061432 | None:intergenic |
| CAAGACATTGGTAGTTGTTA+TGG | 0.303801 | 2_3:+63061250 | None:intergenic |
| AGTATATAAGTTGTTGGAAT+TGG | 0.349233 | 2_3:+63061921 | None:intergenic |
| AAGAGTAGTGGCTACGTTGC+AGG | 0.356620 | 2_3:-63060978 | Msa0305420:CDS |
| GGGGAATTGGTCTTATGAAT+TGG | 0.385058 | 2_3:-63062310 | Msa0305420:intron |
| ACATAATAACAGAGAGGAAC+AGG | 0.423437 | 2_3:-63061764 | Msa0305420:CDS |
| CTCTTCATCAAATATGTTGT+TGG | 0.428970 | 2_3:+63062085 | None:intergenic |
| TAAGACAGTATATAAGTTGT+TGG | 0.436008 | 2_3:+63061915 | None:intergenic |
| CTAGGCCAGTTGTGAAAATA+GGG | 0.436339 | 2_3:+63062015 | None:intergenic |
| ATGAACACTAAAGAATGTTA+TGG | 0.445823 | 2_3:-63061401 | Msa0305420:CDS |
| AGCTTGAAGTGAGGGTTCTA+GGG | 0.452434 | 2_3:-63061358 | Msa0305420:CDS |
| TCTGATTCATGATATCTTTG+AGG | 0.462411 | 2_3:+63062060 | None:intergenic |
| ATTTATACCTGGATTGAAGA+AGG | 0.472752 | 2_3:-63061703 | Msa0305420:intron |
| AAATAATGGAGGAGAATTCA+TGG | 0.475963 | 2_3:-63062332 | None:intergenic |
| TCTTCTTTGAATTCGACCCT+TGG | 0.481461 | 2_3:+63061814 | None:intergenic |
| AGAACCCTCACTTCAAGCTC+TGG | 0.495246 | 2_3:+63061362 | None:intergenic |
| GAAGAAGACATCAAGAAGAA+AGG | 0.507699 | 2_3:-63061479 | Msa0305420:intron |
| TTTGCCTTTGTCATCATCAA+AGG | 0.512672 | 2_3:-63061844 | Msa0305420:CDS |
| TGTTGAATGAGAGACATTGA+TGG | 0.516688 | 2_3:+63061977 | None:intergenic |
| GATTCGCTGTGGGAAGCAAA+AGG | 0.520238 | 2_3:-63061318 | Msa0305420:CDS |
| AGACTAACCTTCTTCAATCC+AGG | 0.524279 | 2_3:+63061696 | None:intergenic |
| ATTTCCAGAGCTTGAAGTGA+GGG | 0.525230 | 2_3:-63061366 | Msa0305420:CDS |
| ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2_3:+63061853 | None:intergenic |
| GAACTTTCAGCATTTATACC+TGG | 0.532111 | 2_3:-63061714 | Msa0305420:CDS |
| TTTAGTGTTCATTTCACCCA+TGG | 0.540015 | 2_3:+63061412 | None:intergenic |
| ACGGACAAGGTTCATGTACT+AGG | 0.549231 | 2_3:-63061551 | Msa0305420:CDS |
| TGGACGAGTTGTTGTTGACT+AGG | 0.551791 | 2_3:+63061997 | None:intergenic |
| AATAATGGAGGAGAATTCAT+GGG | 0.555334 | 2_3:-63062331 | None:intergenic |
| GAATCATGGTGTTGTTCAGT+TGG | 0.556807 | 2_3:+63061867 | None:intergenic |
| AATTACAATGACAGTGCCAT+GGG | 0.574092 | 2_3:-63061428 | Msa0305420:CDS |
| AGTTGGTGGTAACAATGTAG+TGG | 0.574871 | 2_3:+63061884 | None:intergenic |
| TGAAGTGAGGGTTCTAGGGA+AGG | 0.581565 | 2_3:-63061354 | Msa0305420:CDS |
| TAATTACAATGACAGTGCCA+TGG | 0.581993 | 2_3:-63061429 | Msa0305420:CDS |
| CATTTCCAGAGCTTGAAGTG+AGG | 0.591406 | 2_3:-63061367 | Msa0305420:CDS |
| AGTTGTGAAAATAGGGACAC+TGG | 0.603100 | 2_3:+63062022 | None:intergenic |
| TCATCAAAGGCTAACAACCA+AGG | 0.608148 | 2_3:-63061831 | Msa0305420:CDS |
| TCATGGTGTTGTTCAGTTGG+TGG | 0.611030 | 2_3:+63061870 | None:intergenic |
| TTAGCCTTTGATGATGACAA+AGG | 0.628673 | 2_3:+63061840 | None:intergenic |
| AATGGCTGTGTAGACGGACA+AGG | 0.629049 | 2_3:-63061564 | Msa0305420:intron |
| TGTTAATCAAGATTCGCTGT+GGG | 0.635001 | 2_3:-63061328 | Msa0305420:CDS |
| CATCAAAGGCTAACAACCAA+GGG | 0.638491 | 2_3:-63061830 | Msa0305420:CDS |
| GTGTTAATCAAGATTCGCTG+TGG | 0.639073 | 2_3:-63061329 | Msa0305420:CDS |
| TAAATACAAGTTGACCGTGA+AGG | 0.646419 | 2_3:-63061017 | Msa0305420:CDS |
| ATAATGGAGGAGAATTCATG+GGG | 0.647254 | 2_3:-63062330 | Msa0305420:CDS |
| TGGGAAGCAAAAGGAAATTG+TGG | 0.650519 | 2_3:-63061309 | Msa0305420:CDS |
| GGGACACTGGACTGATCTTG+TGG | 0.651566 | 2_3:+63062035 | None:intergenic |
| GCTCTGGAAATGTTTCATTG+TGG | 0.678911 | 2_3:+63061378 | None:intergenic |
| AGGAGAAGCTGTCAAGTACG+TGG | 0.701643 | 2_3:-63061531 | Msa0305420:CDS |
| TAGATCACATAATAACAGAG+AGG | 0.731708 | 2_3:-63061770 | Msa0305420:CDS |
| TAATGGAGGAGAATTCATGG+GGG | 0.808663 | 2_3:-63062329 | Msa0305420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACAATAATTAATCAAG+TGG | + | chr2_3:63061134-63061153 | None:intergenic | 15.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | + | chr2_3:63061637-63061656 | None:intergenic | 15.0% |
| !! | TAAAACAATAATTAATCAAG+TGG | + | chr2_3:63061134-63061153 | None:intergenic | 15.0% |
| !! | AAAAAAATTAAGAAAGGAAT+TGG | + | chr2_3:63061637-63061656 | None:intergenic | 15.0% |
| !! | TTTACAAATTATTCGTTCTT+AGG | - | chr2_3:63061150-63061169 | Msa0305420:intron | 20.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | - | chr2_3:63061639-63061658 | Msa0305420:intron | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | + | chr2_3:63061643-63061662 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | - | chr2_3:63061670-63061689 | Msa0305420:intron | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | - | chr2_3:63061700-63061719 | Msa0305420:intron | 20.0% |
| !!! | TGAATTGTTTTTCTTTTTTG+TGG | + | chr2_3:63062108-63062127 | None:intergenic | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | + | chr2_3:63062202-63062221 | None:intergenic | 20.0% |
| !! | TTTACAAATTATTCGTTCTT+AGG | - | chr2_3:63061150-63061169 | Msa0305420:intron | 20.0% |
| !!! | TCCTTTCTTAATTTTTTTTC+TGG | - | chr2_3:63061639-63061658 | Msa0305420:intron | 20.0% |
| !! | TCCAGAAAAAAAATTAAGAA+AGG | + | chr2_3:63061643-63061662 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTAGTTATCAT+TGG | - | chr2_3:63061670-63061689 | Msa0305420:intron | 20.0% |
| !! | CTATAAAATGACTTATCTAA+TGG | - | chr2_3:63061700-63061719 | Msa0305420:intron | 20.0% |
| !!! | TGAATTGTTTTTCTTTTTTG+TGG | + | chr2_3:63062108-63062127 | None:intergenic | 20.0% |
| !! | GAAACTTACATTGTAATATA+TGG | + | chr2_3:63062202-63062221 | None:intergenic | 20.0% |
| ! | AATTATTCGTTCTTAGGAAA+TGG | - | chr2_3:63061156-63061175 | Msa0305420:intron | 25.0% |
| ! | AGTATATAAGTTGTTGGAAT+TGG | + | chr2_3:63061364-63061383 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | + | chr2_3:63061370-63061389 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | - | chr2_3:63061881-63061900 | Msa0305420:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | - | chr2_3:63062238-63062257 | Msa0305420:intron | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | - | chr2_3:63062239-63062258 | Msa0305420:intron | 25.0% |
| ! | AATTATTCGTTCTTAGGAAA+TGG | - | chr2_3:63061156-63061175 | Msa0305420:intron | 25.0% |
| ! | AGTATATAAGTTGTTGGAAT+TGG | + | chr2_3:63061364-63061383 | None:intergenic | 25.0% |
| ! | TAAGACAGTATATAAGTTGT+TGG | + | chr2_3:63061370-63061389 | None:intergenic | 25.0% |
| ! | ATGAACACTAAAGAATGTTA+TGG | - | chr2_3:63061881-63061900 | Msa0305420:CDS | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | - | chr2_3:63062238-63062257 | Msa0305420:intron | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | - | chr2_3:63062239-63062258 | Msa0305420:intron | 25.0% |
| ! | GTAGTTTTTATAGTTAGTGG+AGG | + | chr2_3:63061112-63061131 | None:intergenic | 30.0% |
| ! | GTGGTAGTTTTTATAGTTAG+TGG | + | chr2_3:63061115-63061134 | None:intergenic | 30.0% |
| CTCTTCATCAAATATGTTGT+TGG | + | chr2_3:63061200-63061219 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | + | chr2_3:63061225-63061244 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | - | chr2_3:63061512-63061531 | Msa0305420:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | - | chr2_3:63061579-63061598 | Msa0305420:intron | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | + | chr2_3:63062058-63062077 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | + | chr2_3:63062156-63062175 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACTAGATCCTTCA+CGG | + | chr2_3:63062282-63062301 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | - | chr2_3:63062292-63062311 | Msa0305420:intron | 30.0% | |
| ! | GTAGTTTTTATAGTTAGTGG+AGG | + | chr2_3:63061112-63061131 | None:intergenic | 30.0% |
| ! | GTGGTAGTTTTTATAGTTAG+TGG | + | chr2_3:63061115-63061134 | None:intergenic | 30.0% |
| CTCTTCATCAAATATGTTGT+TGG | + | chr2_3:63061200-63061219 | None:intergenic | 30.0% | |
| TCTGATTCATGATATCTTTG+AGG | + | chr2_3:63061225-63061244 | None:intergenic | 30.0% | |
| TAGATCACATAATAACAGAG+AGG | - | chr2_3:63061512-63061531 | Msa0305420:CDS | 30.0% | |
| ATTTATACCTGGATTGAAGA+AGG | - | chr2_3:63061579-63061598 | Msa0305420:intron | 30.0% | |
| !! | ATGTTAAGAGTGTTTCCAAA+TGG | + | chr2_3:63062058-63062077 | None:intergenic | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | + | chr2_3:63062156-63062175 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACTAGATCCTTCA+CGG | + | chr2_3:63062282-63062301 | None:intergenic | 30.0% |
| AGTGAAAAAACTAAGAGTAG+TGG | - | chr2_3:63062292-63062311 | Msa0305420:intron | 30.0% | |
| TGTTGAATGAGAGACATTGA+TGG | + | chr2_3:63061308-63061327 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | + | chr2_3:63061432-63061451 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | - | chr2_3:63061438-63061457 | Msa0305420:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | + | chr2_3:63061445-63061464 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | - | chr2_3:63061518-63061537 | Msa0305420:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | - | chr2_3:63061568-63061587 | Msa0305420:intron | 35.0% | |
| ! | AGGAATTGGTTCACATATCT+AGG | + | chr2_3:63061623-63061642 | None:intergenic | 35.0% |
| TTATCTAATGGCTGTGTAGA+CGG | - | chr2_3:63061712-63061731 | Msa0305420:CDS | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | - | chr2_3:63061803-63061822 | Msa0305420:CDS | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | + | chr2_3:63061853-63061872 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | - | chr2_3:63061853-63061872 | Msa0305420:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | - | chr2_3:63061854-63061873 | Msa0305420:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | + | chr2_3:63061873-63061892 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | - | chr2_3:63061954-63061973 | Msa0305420:intron | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | + | chr2_3:63062035-63062054 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | - | chr2_3:63062072-63062091 | Msa0305420:CDS | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | + | chr2_3:63062083-63062102 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | - | chr2_3:63062265-63062284 | Msa0305420:intron | 35.0% |
| TGTTGAATGAGAGACATTGA+TGG | + | chr2_3:63061308-63061327 | None:intergenic | 35.0% | |
| ATGACAAAGGCAAAGAATCA+TGG | + | chr2_3:63061432-63061451 | None:intergenic | 35.0% | |
| TTTGCCTTTGTCATCATCAA+AGG | - | chr2_3:63061438-63061457 | Msa0305420:CDS | 35.0% | |
| !! | TTAGCCTTTGATGATGACAA+AGG | + | chr2_3:63061445-63061464 | None:intergenic | 35.0% |
| ACATAATAACAGAGAGGAAC+AGG | - | chr2_3:63061518-63061537 | Msa0305420:CDS | 35.0% | |
| GAACTTTCAGCATTTATACC+TGG | - | chr2_3:63061568-63061587 | Msa0305420:intron | 35.0% | |
| ! | AGGAATTGGTTCACATATCT+AGG | + | chr2_3:63061623-63061642 | None:intergenic | 35.0% |
| TTATCTAATGGCTGTGTAGA+CGG | - | chr2_3:63061712-63061731 | Msa0305420:CDS | 35.0% | |
| GAAGAAGACATCAAGAAGAA+AGG | - | chr2_3:63061803-63061822 | Msa0305420:CDS | 35.0% | |
| TGGCACTGTCATTGTAATTA+AGG | + | chr2_3:63061853-63061872 | None:intergenic | 35.0% | |
| TAATTACAATGACAGTGCCA+TGG | - | chr2_3:63061853-63061872 | Msa0305420:CDS | 35.0% | |
| AATTACAATGACAGTGCCAT+GGG | - | chr2_3:63061854-63061873 | Msa0305420:CDS | 35.0% | |
| TTTAGTGTTCATTTCACCCA+TGG | + | chr2_3:63061873-63061892 | None:intergenic | 35.0% | |
| TGTTAATCAAGATTCGCTGT+GGG | - | chr2_3:63061954-63061973 | Msa0305420:intron | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | + | chr2_3:63062035-63062054 | None:intergenic | 35.0% |
| TAACATCACCATTATTGCTC+AGG | - | chr2_3:63062072-63062091 | Msa0305420:CDS | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | + | chr2_3:63062083-63062102 | None:intergenic | 35.0% | |
| ! | TAAATACAAGTTGACCGTGA+AGG | - | chr2_3:63062265-63062284 | Msa0305420:intron | 35.0% |
| !! | GGGGAATTGGTCTTATGAAT+TGG | - | chr2_3:63060972-63060991 | Msa0305420:CDS | 40.0% |
| AGTTGTGAAAATAGGGACAC+TGG | + | chr2_3:63061263-63061282 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | - | chr2_3:63061262-63061281 | Msa0305420:CDS | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | + | chr2_3:63061270-63061289 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | + | chr2_3:63061271-63061290 | None:intergenic | 40.0% | |
| !! | TGTTGGAATTGGTAATGAGC+TGG | + | chr2_3:63061353-63061372 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | + | chr2_3:63061401-63061420 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | + | chr2_3:63061418-63061437 | None:intergenic | 40.0% |
| TCATCAAAGGCTAACAACCA+AGG | - | chr2_3:63061451-63061470 | Msa0305420:CDS | 40.0% | |
| CATCAAAGGCTAACAACCAA+GGG | - | chr2_3:63061452-63061471 | Msa0305420:CDS | 40.0% | |
| TCTTCTTTGAATTCGACCCT+TGG | + | chr2_3:63061471-63061490 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | + | chr2_3:63061589-63061608 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | + | chr2_3:63061907-63061926 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | - | chr2_3:63061916-63061935 | Msa0305420:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | - | chr2_3:63061953-63061972 | Msa0305420:intron | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | - | chr2_3:63061973-63061992 | Msa0305420:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | - | chr2_3:63062040-63062059 | Msa0305420:CDS | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | + | chr2_3:63062047-63062066 | None:intergenic | 40.0% | |
| !! | GGGGAATTGGTCTTATGAAT+TGG | - | chr2_3:63060972-63060991 | Msa0305420:CDS | 40.0% |
| AGTTGTGAAAATAGGGACAC+TGG | + | chr2_3:63061263-63061282 | None:intergenic | 40.0% | |
| ! | AGTGTCCCTATTTTCACAAC+TGG | - | chr2_3:63061262-63061281 | Msa0305420:CDS | 40.0% |
| CTAGGCCAGTTGTGAAAATA+GGG | + | chr2_3:63061270-63061289 | None:intergenic | 40.0% | |
| ACTAGGCCAGTTGTGAAAAT+AGG | + | chr2_3:63061271-63061290 | None:intergenic | 40.0% | |
| !! | TGTTGGAATTGGTAATGAGC+TGG | + | chr2_3:63061353-63061372 | None:intergenic | 40.0% |
| !! | AGTTGGTGGTAACAATGTAG+TGG | + | chr2_3:63061401-63061420 | None:intergenic | 40.0% |
| !! | GAATCATGGTGTTGTTCAGT+TGG | + | chr2_3:63061418-63061437 | None:intergenic | 40.0% |
| TCATCAAAGGCTAACAACCA+AGG | - | chr2_3:63061451-63061470 | Msa0305420:CDS | 40.0% | |
| CATCAAAGGCTAACAACCAA+GGG | - | chr2_3:63061452-63061471 | Msa0305420:CDS | 40.0% | |
| TCTTCTTTGAATTCGACCCT+TGG | + | chr2_3:63061471-63061490 | None:intergenic | 40.0% | |
| AGACTAACCTTCTTCAATCC+AGG | + | chr2_3:63061589-63061608 | None:intergenic | 40.0% | |
| !! | GCTCTGGAAATGTTTCATTG+TGG | + | chr2_3:63061907-63061926 | None:intergenic | 40.0% |
| ATTTCCAGAGCTTGAAGTGA+GGG | - | chr2_3:63061916-63061935 | Msa0305420:CDS | 40.0% | |
| GTGTTAATCAAGATTCGCTG+TGG | - | chr2_3:63061953-63061972 | Msa0305420:intron | 40.0% | |
| TGGGAAGCAAAAGGAAATTG+TGG | - | chr2_3:63061973-63061992 | Msa0305420:CDS | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | - | chr2_3:63062040-63062059 | Msa0305420:CDS | 40.0% | |
| GTTTCCAAATGGCAAGACAT+TGG | + | chr2_3:63062047-63062066 | None:intergenic | 40.0% | |
| AGGAGAATTCATGGGGGAAT+TGG | - | chr2_3:63060959-63060978 | Msa0305420:CDS | 45.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | + | chr2_3:63061288-63061307 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | + | chr2_3:63061415-63061434 | None:intergenic | 45.0% |
| ACGGACAAGGTTCATGTACT+AGG | - | chr2_3:63061731-63061750 | Msa0305420:CDS | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | - | chr2_3:63061809-63061828 | Msa0305420:CDS | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | - | chr2_3:63061915-63061934 | Msa0305420:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | - | chr2_3:63061924-63061943 | Msa0305420:CDS | 45.0% | |
| AGGAGAATTCATGGGGGAAT+TGG | - | chr2_3:63060959-63060978 | Msa0305420:CDS | 45.0% | |
| ! | TGGACGAGTTGTTGTTGACT+AGG | + | chr2_3:63061288-63061307 | None:intergenic | 45.0% |
| !! | TCATGGTGTTGTTCAGTTGG+TGG | + | chr2_3:63061415-63061434 | None:intergenic | 45.0% |
| ACGGACAAGGTTCATGTACT+AGG | - | chr2_3:63061731-63061750 | Msa0305420:CDS | 45.0% | |
| ! | GACATCAAGAAGAAAGGTGC+AGG | - | chr2_3:63061809-63061828 | Msa0305420:CDS | 45.0% |
| CATTTCCAGAGCTTGAAGTG+AGG | - | chr2_3:63061915-63061934 | Msa0305420:CDS | 45.0% | |
| AGCTTGAAGTGAGGGTTCTA+GGG | - | chr2_3:63061924-63061943 | Msa0305420:CDS | 45.0% | |
| !! | TATATTATAGTAATTAAATT+TGG | + | chr2_3:63062178-63062197 | None:intergenic | 5.0% |
| !! | TATATTATAGTAATTAAATT+TGG | + | chr2_3:63062178-63062197 | None:intergenic | 5.0% |
| AATGGCTGTGTAGACGGACA+AGG | - | chr2_3:63061718-63061737 | Msa0305420:CDS | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | - | chr2_3:63061751-63061770 | Msa0305420:CDS | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | + | chr2_3:63061923-63061942 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | - | chr2_3:63061923-63061942 | Msa0305420:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | - | chr2_3:63061928-63061947 | Msa0305420:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | - | chr2_3:63061964-63061983 | Msa0305420:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | - | chr2_3:63062304-63062323 | Msa0305420:intron | 50.0% | |
| AATGGCTGTGTAGACGGACA+AGG | - | chr2_3:63061718-63061737 | Msa0305420:CDS | 50.0% | |
| AGGAGAAGCTGTCAAGTACG+TGG | - | chr2_3:63061751-63061770 | Msa0305420:CDS | 50.0% | |
| AGAACCCTCACTTCAAGCTC+TGG | + | chr2_3:63061923-63061942 | None:intergenic | 50.0% | |
| GAGCTTGAAGTGAGGGTTCT+AGG | - | chr2_3:63061923-63061942 | Msa0305420:CDS | 50.0% | |
| !! | TGAAGTGAGGGTTCTAGGGA+AGG | - | chr2_3:63061928-63061947 | Msa0305420:CDS | 50.0% |
| GATTCGCTGTGGGAAGCAAA+AGG | - | chr2_3:63061964-63061983 | Msa0305420:CDS | 50.0% | |
| AAGAGTAGTGGCTACGTTGC+AGG | - | chr2_3:63062304-63062323 | Msa0305420:intron | 50.0% | |
| GGGACACTGGACTGATCTTG+TGG | + | chr2_3:63061250-63061269 | None:intergenic | 55.0% | |
| GGGACACTGGACTGATCTTG+TGG | + | chr2_3:63061250-63061269 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 63060955 | 63062349 | 63060955 | ID=Msa0305420;Name=Msa0305420 |
| chr2_3 | mRNA | 63060955 | 63062349 | 63060955 | ID=Msa0305420-mRNA-1;Parent=Msa0305420;Name=Msa0305420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.83|0.4|0.16|6|0|287 |
| chr2_3 | exon | 63062311 | 63062349 | 63062311 | ID=Msa0305420-mRNA-1:exon:21039;Parent=Msa0305420-mRNA-1 |
| chr2_3 | exon | 63061960 | 63062132 | 63061960 | ID=Msa0305420-mRNA-1:exon:21038;Parent=Msa0305420-mRNA-1 |
| chr2_3 | exon | 63061704 | 63061950 | 63061704 | ID=Msa0305420-mRNA-1:exon:21037;Parent=Msa0305420-mRNA-1 |
| chr2_3 | exon | 63061480 | 63061573 | 63061480 | ID=Msa0305420-mRNA-1:exon:21036;Parent=Msa0305420-mRNA-1 |
| chr2_3 | exon | 63061256 | 63061473 | 63061256 | ID=Msa0305420-mRNA-1:exon:21035;Parent=Msa0305420-mRNA-1 |
| chr2_3 | exon | 63060955 | 63061047 | 63060955 | ID=Msa0305420-mRNA-1:exon:21034;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63062311 | 63062349 | 63062311 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63061960 | 63062132 | 63061960 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63061704 | 63061950 | 63061704 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63061480 | 63061573 | 63061480 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63061256 | 63061473 | 63061256 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| chr2_3 | CDS | 63060955 | 63061047 | 63060955 | ID=Msa0305420-mRNA-1:cds;Parent=Msa0305420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
