Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305920 | XP_003597853.1 | 88.024 | 167 | 18 | 2 | 1 | 166 | 1 | 166 | 1.81e-94 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0305920 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305920 | MtrunA17_Chr2g0332631 | 86.000 | 100 | 12 | 2 | 1 | 99 | 1 | 99 | 1.18e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGTCTTAATCCTCATA+TGG | 0.366307 | 2_3:-63999737 | None:intergenic |
| TCTGCTGCTGCTACAACTAA+TGG | 0.397952 | 2_3:+64001134 | Msa0305920:CDS |
| GCCATGTGCATAGTTGCATT+GGG | 0.419796 | 2_3:-63999802 | None:intergenic |
| TGAACATAATGAAGAGGTAG+AGG | 0.427658 | 2_3:-63999930 | None:intergenic |
| AACGACCTCAGAACAGCAAC+AGG | 0.451715 | 2_3:+63999828 | Msa0305920:CDS |
| AAAATTCACAAACCCATATG+AGG | 0.470113 | 2_3:+63999724 | Msa0305920:CDS |
| TCATTCGTCTCTATGCTGAT+TGG | 0.477473 | 2_3:+64001311 | Msa0305920:CDS |
| ACTACCTCTTTACATAAGAA+TGG | 0.478765 | 2_3:+64001242 | Msa0305920:CDS |
| ATGAACATTCTACAGAATCT+TGG | 0.480970 | 2_3:-63999852 | None:intergenic |
| AGCCATGTGCATAGTTGCAT+TGG | 0.488645 | 2_3:-63999803 | None:intergenic |
| CTGAGTCTTAATCCTCATAT+GGG | 0.496970 | 2_3:-63999736 | None:intergenic |
| CATAAGAATGGACCGTATGC+TGG | 0.500563 | 2_3:+64001254 | Msa0305920:CDS |
| CGGTCCATTCTTATGTAAAG+AGG | 0.523765 | 2_3:-64001246 | None:intergenic |
| ACATAATGAAGAGGTAGAGG+AGG | 0.543147 | 2_3:-63999927 | None:intergenic |
| GTAGAGGAGGAGTTGCATGA+AGG | 0.548027 | 2_3:-63999914 | None:intergenic |
| TGATACAAAATGCAGAATGC+AGG | 0.549025 | 2_3:+64001099 | Msa0305920:CDS |
| CTGACAAAACACAATGCAAA+GGG | 0.552604 | 2_3:+64001288 | Msa0305920:CDS |
| TTGGTCCTGTTGCTGTTCTG+AGG | 0.555812 | 2_3:-63999833 | None:intergenic |
| ATGGCTGAGGTATTTGTAGC+AGG | 0.556435 | 2_3:-64001209 | None:intergenic |
| CCCCAATGCAACTATGCACA+TGG | 0.558064 | 2_3:+63999801 | Msa0305920:CDS |
| GTGTCCGTAGCTACAATGTC+TGG | 0.558270 | 2_3:-63999880 | None:intergenic |
| AGAGGTAGTTGCCGCTGTGA+TGG | 0.562973 | 2_3:-64001228 | None:intergenic |
| CACACCAGACATTGTAGCTA+CGG | 0.572650 | 2_3:+63999876 | Msa0305920:CDS |
| TTGCATTGGGGTGCAACAAG+AGG | 0.590171 | 2_3:-63999789 | None:intergenic |
| GATAGGGATTTACCAGCATA+CGG | 0.594337 | 2_3:-64001266 | None:intergenic |
| TCTGACAAAACACAATGCAA+AGG | 0.615125 | 2_3:+64001287 | Msa0305920:CDS |
| AGTTGCCGCTGTGATGGCTG+AGG | 0.641938 | 2_3:-64001222 | None:intergenic |
| TGAGGATGAACATAATGAAG+AGG | 0.648497 | 2_3:-63999936 | None:intergenic |
| CCATGTGCATAGTTGCATTG+GGG | 0.656451 | 2_3:-63999801 | None:intergenic |
| CTATGCAAAAGATTCATGCA+AGG | 0.677580 | 2_3:+63999759 | Msa0305920:CDS |
| AGTTTGTGAATGCAGAACCA+GGG | 0.757579 | 2_3:+64001075 | Msa0305920:intron |
| AAATACCTCAGCCATCACAG+CGG | 0.800744 | 2_3:+64001217 | Msa0305920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_3:64000296-64000315 | Msa0305920:intron | 10.0% |
| !!! | TTTTTTTAAACATTATTACT+TGG | + | chr2_3:64000296-64000315 | Msa0305920:intron | 10.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_3:64000451-64000470 | Msa0305920:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_3:64000801-64000820 | None:intergenic | 15.0% |
| !! | TTAATTAATAAGTAATGTCT+CGG | + | chr2_3:64000451-64000470 | Msa0305920:intron | 15.0% |
| !! | AATAAGCTAAAAACAATTTA+TGG | - | chr2_3:64000801-64000820 | None:intergenic | 15.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_3:64000066-64000085 | Msa0305920:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_3:64000067-64000086 | Msa0305920:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_3:64000212-64000231 | Msa0305920:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_3:64000916-64000935 | Msa0305920:intron | 20.0% |
| !! | TTCTTAGTATTAGAACAAAA+AGG | + | chr2_3:64000066-64000085 | Msa0305920:intron | 20.0% |
| !! | TCTTAGTATTAGAACAAAAA+GGG | + | chr2_3:64000067-64000086 | Msa0305920:intron | 20.0% |
| !!! | TTTATAGGTTTTATGTAATC+TGG | + | chr2_3:64000212-64000231 | Msa0305920:intron | 20.0% |
| !! | ACATAAACACTTATATGATA+TGG | + | chr2_3:64000916-64000935 | Msa0305920:intron | 20.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_3:64000404-64000423 | Msa0305920:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_3:64000438-64000457 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | + | chr2_3:64000485-64000504 | Msa0305920:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_3:64000691-64000710 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_3:64000699-64000718 | Msa0305920:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_3:64001030-64001049 | Msa0305920:intron | 25.0% |
| ! | AAACAACAAACACATAATGT+TGG | + | chr2_3:64000404-64000423 | Msa0305920:intron | 25.0% |
| ! | TAATTAAGCAACCTCATAAT+CGG | - | chr2_3:64000438-64000457 | None:intergenic | 25.0% |
| ! | ATAAATGGAAAAATGTGCAT+CGG | + | chr2_3:64000485-64000504 | Msa0305920:intron | 25.0% |
| ! | AGTAGAAAATTGTCAAATAG+CGG | - | chr2_3:64000691-64000710 | None:intergenic | 25.0% |
| !! | CAATTTTCTACTAAATATCG+TGG | + | chr2_3:64000699-64000718 | Msa0305920:intron | 25.0% |
| ! | AATAGAATATAGAACTGTGT+TGG | + | chr2_3:64001030-64001049 | Msa0305920:intron | 25.0% |
| AAAATTCACAAACCCATATG+AGG | + | chr2_3:63999724-63999743 | Msa0305920:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_3:63999855-63999874 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_3:64000002-64000021 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_3:64000029-64000048 | Msa0305920:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | - | chr2_3:64000110-64000129 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_3:64000880-64000899 | Msa0305920:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_3:64000999-64001018 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_3:64001011-64001030 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_3:64001242-64001261 | Msa0305920:CDS | 30.0% | |
| AAAATTCACAAACCCATATG+AGG | + | chr2_3:63999724-63999743 | Msa0305920:CDS | 30.0% | |
| ATGAACATTCTACAGAATCT+TGG | - | chr2_3:63999855-63999874 | None:intergenic | 30.0% | |
| AGAAGTTGAAGAAAAATACG+TGG | - | chr2_3:64000002-64000021 | None:intergenic | 30.0% | |
| !! | ACTACACTAACACTACTTTT+TGG | + | chr2_3:64000029-64000048 | Msa0305920:intron | 30.0% |
| ! | ACACTTTTGATCAAATGTGT+CGG | - | chr2_3:64000110-64000129 | None:intergenic | 30.0% |
| ! | GACTTCAGTTTATCTTTTGT+TGG | + | chr2_3:64000880-64000899 | Msa0305920:intron | 30.0% |
| AGCTTTCATGGAAATCATAT+TGG | - | chr2_3:64000999-64001018 | None:intergenic | 30.0% | |
| TGAATCACAAAAAGCTTTCA+TGG | - | chr2_3:64001011-64001030 | None:intergenic | 30.0% | |
| ACTACCTCTTTACATAAGAA+TGG | + | chr2_3:64001242-64001261 | Msa0305920:CDS | 30.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_3:63999739-63999758 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_3:63999759-63999778 | Msa0305920:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_3:63999933-63999952 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_3:63999939-63999958 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_3:63999996-64000015 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_3:64000197-64000216 | Msa0305920:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_3:64000470-64000489 | Msa0305920:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_3:64000521-64000540 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_3:64000522-64000541 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_3:64000523-64000542 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_3:64000619-64000638 | Msa0305920:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_3:64000626-64000645 | Msa0305920:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_3:64000836-64000855 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_3:64000959-64000978 | Msa0305920:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_3:64000986-64001005 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_3:64001099-64001118 | Msa0305920:CDS | 35.0% | |
| ! | GCATTGTGTTTTGTCAGATA+GGG | - | chr2_3:64001285-64001304 | None:intergenic | 35.0% |
| ! | TGCATTGTGTTTTGTCAGAT+AGG | - | chr2_3:64001286-64001305 | None:intergenic | 35.0% |
| TCTGACAAAACACAATGCAA+AGG | + | chr2_3:64001287-64001306 | Msa0305920:CDS | 35.0% | |
| CTGACAAAACACAATGCAAA+GGG | + | chr2_3:64001288-64001307 | Msa0305920:CDS | 35.0% | |
| CTGAGTCTTAATCCTCATAT+GGG | - | chr2_3:63999739-63999758 | None:intergenic | 35.0% | |
| CTATGCAAAAGATTCATGCA+AGG | + | chr2_3:63999759-63999778 | Msa0305920:CDS | 35.0% | |
| TGAACATAATGAAGAGGTAG+AGG | - | chr2_3:63999933-63999952 | None:intergenic | 35.0% | |
| TGAGGATGAACATAATGAAG+AGG | - | chr2_3:63999939-63999958 | None:intergenic | 35.0% | |
| TGAAGAAAAATACGTGGTTG+TGG | - | chr2_3:63999996-64000015 | None:intergenic | 35.0% | |
| ! | TGTTTGTGTTGGTGCTTTAT+AGG | + | chr2_3:64000197-64000216 | Msa0305920:intron | 35.0% |
| ! | TCGGATTCGAGTCTTATAAA+TGG | + | chr2_3:64000470-64000489 | Msa0305920:intron | 35.0% |
| AAATAGACCCTAACTCATAG+GGG | - | chr2_3:64000521-64000540 | None:intergenic | 35.0% | |
| CAAATAGACCCTAACTCATA+GGG | - | chr2_3:64000522-64000541 | None:intergenic | 35.0% | |
| TCAAATAGACCCTAACTCAT+AGG | - | chr2_3:64000523-64000542 | None:intergenic | 35.0% | |
| ! | ATGCTCTCAATTTTGAATCG+CGG | + | chr2_3:64000619-64000638 | Msa0305920:intron | 35.0% |
| ! | CAATTTTGAATCGCGGAAAT+TGG | + | chr2_3:64000626-64000645 | Msa0305920:intron | 35.0% |
| GCTGTTTGTATAAGCTATCA+TGG | - | chr2_3:64000836-64000855 | None:intergenic | 35.0% | |
| ATTAAGCTGTTTACCCAAAC+AGG | + | chr2_3:64000959-64000978 | Msa0305920:intron | 35.0% | |
| ATCATATTGGACCTGGAATA+AGG | - | chr2_3:64000986-64001005 | None:intergenic | 35.0% | |
| TGATACAAAATGCAGAATGC+AGG | + | chr2_3:64001099-64001118 | Msa0305920:CDS | 35.0% | |
| ! | GCATTGTGTTTTGTCAGATA+GGG | - | chr2_3:64001285-64001304 | None:intergenic | 35.0% |
| ! | TGCATTGTGTTTTGTCAGAT+AGG | - | chr2_3:64001286-64001305 | None:intergenic | 35.0% |
| TCTGACAAAACACAATGCAA+AGG | + | chr2_3:64001287-64001306 | Msa0305920:CDS | 35.0% | |
| CTGACAAAACACAATGCAAA+GGG | + | chr2_3:64001288-64001307 | Msa0305920:CDS | 35.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_3:63999740-63999759 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_3:63999930-63999949 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_3:64000150-64000169 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_3:64000196-64000215 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_3:64000332-64000351 | Msa0305920:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_3:64000339-64000358 | Msa0305920:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_3:64000357-64000376 | Msa0305920:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_3:64000510-64000529 | Msa0305920:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_3:64000511-64000530 | Msa0305920:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_3:64000629-64000648 | Msa0305920:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_3:64000993-64001012 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_3:64001075-64001094 | Msa0305920:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_3:64001095-64001114 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_3:64001160-64001179 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_3:64001249-64001268 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_3:64001269-64001288 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_3:64001311-64001330 | Msa0305920:CDS | 40.0% | |
| GCTGAGTCTTAATCCTCATA+TGG | - | chr2_3:63999740-63999759 | None:intergenic | 40.0% | |
| ACATAATGAAGAGGTAGAGG+AGG | - | chr2_3:63999930-63999949 | None:intergenic | 40.0% | |
| CACATTTGTCAGTGTTGTGT+TGG | - | chr2_3:64000150-64000169 | None:intergenic | 40.0% | |
| ! | TAAAGCACCAACACAAACAC+CGG | - | chr2_3:64000196-64000215 | None:intergenic | 40.0% |
| ! | GCAGCTTGCTTAATCAGTTA+TGG | + | chr2_3:64000332-64000351 | Msa0305920:intron | 40.0% |
| GCTTAATCAGTTATGGCATG+TGG | + | chr2_3:64000339-64000358 | Msa0305920:intron | 40.0% | |
| TGTGGTGAATTTAGCTAGGA+TGG | + | chr2_3:64000357-64000376 | Msa0305920:intron | 40.0% | |
| ! | ATGATTTGCCCCTATGAGTT+AGG | + | chr2_3:64000510-64000529 | Msa0305920:intron | 40.0% |
| ! | TGATTTGCCCCTATGAGTTA+GGG | + | chr2_3:64000511-64000530 | Msa0305920:intron | 40.0% |
| ! | TTTTGAATCGCGGAAATTGG+CGG | + | chr2_3:64000629-64000648 | Msa0305920:intron | 40.0% |
| CATGGAAATCATATTGGACC+TGG | - | chr2_3:64000993-64001012 | None:intergenic | 40.0% | |
| AGTTTGTGAATGCAGAACCA+GGG | + | chr2_3:64001075-64001094 | Msa0305920:intron | 40.0% | |
| ! | TCTGCATTTTGTATCATCCC+TGG | - | chr2_3:64001095-64001114 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTGTGCAGAAGAG+TGG | - | chr2_3:64001160-64001179 | None:intergenic | 40.0% |
| CGGTCCATTCTTATGTAAAG+AGG | - | chr2_3:64001249-64001268 | None:intergenic | 40.0% | |
| GATAGGGATTTACCAGCATA+CGG | - | chr2_3:64001269-64001288 | None:intergenic | 40.0% | |
| TCATTCGTCTCTATGCTGAT+TGG | + | chr2_3:64001311-64001330 | Msa0305920:CDS | 40.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_3:63999804-63999823 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_3:63999805-63999824 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_3:63999806-63999825 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_3:63999876-63999895 | Msa0305920:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_3:64000174-64000193 | Msa0305920:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_3:64000353-64000372 | Msa0305920:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_3:64000424-64000443 | Msa0305920:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_3:64000733-64000752 | Msa0305920:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_3:64000745-64000764 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_3:64000975-64000994 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_3:64000976-64000995 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_3:64001074-64001093 | Msa0305920:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_3:64001134-64001153 | Msa0305920:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_3:64001212-64001231 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_3:64001217-64001236 | Msa0305920:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_3:64001254-64001273 | Msa0305920:CDS | 45.0% | |
| CCATGTGCATAGTTGCATTG+GGG | - | chr2_3:63999804-63999823 | None:intergenic | 45.0% | |
| GCCATGTGCATAGTTGCATT+GGG | - | chr2_3:63999805-63999824 | None:intergenic | 45.0% | |
| AGCCATGTGCATAGTTGCAT+TGG | - | chr2_3:63999806-63999825 | None:intergenic | 45.0% | |
| CACACCAGACATTGTAGCTA+CGG | + | chr2_3:63999876-63999895 | Msa0305920:CDS | 45.0% | |
| CATTCGATCAGTGTTGTGTC+CGG | + | chr2_3:64000174-64000193 | Msa0305920:intron | 45.0% | |
| GGCATGTGGTGAATTTAGCT+AGG | + | chr2_3:64000353-64000372 | Msa0305920:intron | 45.0% | |
| ! | TGGTTCTTCTGCCGATTATG+AGG | + | chr2_3:64000424-64000443 | Msa0305920:intron | 45.0% |
| GTTCGAATTCCACTACGCTA+TGG | + | chr2_3:64000733-64000752 | Msa0305920:intron | 45.0% | |
| ATAGTGTCACCATAGCGTAG+TGG | - | chr2_3:64000745-64000764 | None:intergenic | 45.0% | |
| CCTGGAATAAGGTCCTGTTT+GGG | - | chr2_3:64000975-64000994 | None:intergenic | 45.0% | |
| ACCTGGAATAAGGTCCTGTT+TGG | - | chr2_3:64000976-64000995 | None:intergenic | 45.0% | |
| GAGTTTGTGAATGCAGAACC+AGG | + | chr2_3:64001074-64001093 | Msa0305920:intron | 45.0% | |
| TCTGCTGCTGCTACAACTAA+TGG | + | chr2_3:64001134-64001153 | Msa0305920:CDS | 45.0% | |
| ! | ATGGCTGAGGTATTTGTAGC+AGG | - | chr2_3:64001212-64001231 | None:intergenic | 45.0% |
| AAATACCTCAGCCATCACAG+CGG | + | chr2_3:64001217-64001236 | Msa0305920:CDS | 45.0% | |
| CATAAGAATGGACCGTATGC+TGG | + | chr2_3:64001254-64001273 | Msa0305920:CDS | 45.0% | |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_3:64000262-64000281 | Msa0305920:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_3:64000263-64000282 | Msa0305920:intron | 5.0% |
| !!! | TTTTTGTTATTAAAATAAAA+TGG | + | chr2_3:64000262-64000281 | Msa0305920:intron | 5.0% |
| !!! | TTTTGTTATTAAAATAAAAT+GGG | + | chr2_3:64000263-64000282 | Msa0305920:intron | 5.0% |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_3:63999792-63999811 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_3:63999801-63999820 | Msa0305920:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_3:63999828-63999847 | Msa0305920:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_3:63999836-63999855 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_3:63999883-63999902 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_3:63999917-63999936 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_3:64000186-64000205 | Msa0305920:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_3:64000674-64000693 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_3:64000972-64000991 | Msa0305920:intron | 50.0% | |
| TTGCATTGGGGTGCAACAAG+AGG | - | chr2_3:63999792-63999811 | None:intergenic | 50.0% | |
| CCCCAATGCAACTATGCACA+TGG | + | chr2_3:63999801-63999820 | Msa0305920:CDS | 50.0% | |
| AACGACCTCAGAACAGCAAC+AGG | + | chr2_3:63999828-63999847 | Msa0305920:CDS | 50.0% | |
| ! | TTGGTCCTGTTGCTGTTCTG+AGG | - | chr2_3:63999836-63999855 | None:intergenic | 50.0% |
| GTGTCCGTAGCTACAATGTC+TGG | - | chr2_3:63999883-63999902 | None:intergenic | 50.0% | |
| GTAGAGGAGGAGTTGCATGA+AGG | - | chr2_3:63999917-63999936 | None:intergenic | 50.0% | |
| GTTGTGTCCGGTGTTTGTGT+TGG | + | chr2_3:64000186-64000205 | Msa0305920:intron | 50.0% | |
| TAGCGGCGCTGTAGCATTAT+AGG | - | chr2_3:64000674-64000693 | None:intergenic | 50.0% | |
| CCCAAACAGGACCTTATTCC+AGG | + | chr2_3:64000972-64000991 | Msa0305920:intron | 50.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_3:64001231-64001250 | None:intergenic | 55.0% | |
| AGAGGTAGTTGCCGCTGTGA+TGG | - | chr2_3:64001231-64001250 | None:intergenic | 55.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_3:64001225-64001244 | None:intergenic | 60.0% | |
| AGTTGCCGCTGTGATGGCTG+AGG | - | chr2_3:64001225-64001244 | None:intergenic | 60.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_3:63999957-63999976 | None:intergenic | 65.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr2_3:63999957-63999976 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 63999708 | 64001364 | 63999708 | ID=Msa0305920;Name=Msa0305920 |
| chr2_3 | mRNA | 63999708 | 64001364 | 63999708 | ID=Msa0305920-mRNA-1;Parent=Msa0305920;Name=Msa0305920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|189 |
| chr2_3 | exon | 63999708 | 64000002 | 63999708 | ID=Msa0305920-mRNA-1:exon:21409;Parent=Msa0305920-mRNA-1 |
| chr2_3 | exon | 64001090 | 64001364 | 64001090 | ID=Msa0305920-mRNA-1:exon:21410;Parent=Msa0305920-mRNA-1 |
| chr2_3 | CDS | 63999708 | 64000002 | 63999708 | ID=Msa0305920-mRNA-1:cds;Parent=Msa0305920-mRNA-1 |
| chr2_3 | CDS | 64001090 | 64001364 | 64001090 | ID=Msa0305920-mRNA-1:cds;Parent=Msa0305920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
