Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306450 | XP_024636868.1 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 3.10e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306450 | sp|Q8L3W1|VRN1_ARATH | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.10e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306450 | A0A396IHE6 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 1.48e-133 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0306450 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306450 | MtrunA17_Chr4g0067431 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 2.85e-137 | 391 |
| Msa0306450 | MtrunA17_Chr1g0163221 | 56.958 | 309 | 104 | 8 | 1 | 303 | 1 | 286 | 8.96e-98 | 292 |
| Msa0306450 | MtrunA17_Chr6g0467351 | 62.712 | 236 | 70 | 4 | 1 | 228 | 1 | 226 | 3.09e-93 | 276 |
| Msa0306450 | MtrunA17_Chr1g0163061 | 55.094 | 265 | 69 | 3 | 1 | 215 | 1 | 265 | 2.89e-71 | 221 |
| Msa0306450 | MtrunA17_Chr1g0163131 | 29.582 | 311 | 184 | 16 | 8 | 302 | 14 | 305 | 4.15e-28 | 110 |
| Msa0306450 | MtrunA17_Chr3g0131891 | 31.544 | 298 | 165 | 12 | 10 | 293 | 17 | 289 | 6.03e-28 | 110 |
| Msa0306450 | MtrunA17_Chr1g0163071 | 28.223 | 287 | 178 | 8 | 28 | 297 | 2 | 277 | 2.22e-27 | 108 |
| Msa0306450 | MtrunA17_Chr1g0163251 | 27.891 | 294 | 168 | 10 | 12 | 295 | 9 | 268 | 3.24e-25 | 104 |
| Msa0306450 | MtrunA17_Chr3g0103181 | 28.383 | 303 | 171 | 11 | 10 | 303 | 10 | 275 | 4.83e-25 | 101 |
| Msa0306450 | MtrunA17_Chr1g0163261 | 27.891 | 294 | 179 | 9 | 8 | 295 | 5 | 271 | 2.03e-23 | 97.8 |
| Msa0306450 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 186 | 7 | 27 | 293 | 12 | 276 | 3.99e-23 | 99.0 |
| Msa0306450 | MtrunA17_Chr1g0163181 | 28.826 | 281 | 177 | 11 | 21 | 293 | 14 | 279 | 4.12e-23 | 98.6 |
| Msa0306450 | MtrunA17_Chr3g0103151 | 37.908 | 153 | 81 | 6 | 10 | 153 | 10 | 157 | 5.39e-23 | 93.2 |
| Msa0306450 | MtrunA17_Chr8g0390841 | 24.658 | 292 | 205 | 6 | 10 | 295 | 37 | 319 | 8.23e-23 | 98.6 |
| Msa0306450 | MtrunA17_Chr7g0233561 | 26.403 | 303 | 184 | 10 | 10 | 293 | 16 | 298 | 3.78e-22 | 94.7 |
| Msa0306450 | MtrunA17_Chr7g0233571 | 42.991 | 107 | 55 | 2 | 10 | 111 | 8 | 113 | 2.41e-21 | 90.5 |
| Msa0306450 | MtrunA17_Chr1g0163201 | 27.018 | 285 | 159 | 9 | 27 | 293 | 18 | 271 | 4.30e-21 | 92.8 |
| Msa0306450 | MtrunA17_Chr6g0467361 | 52.055 | 73 | 35 | 0 | 228 | 300 | 7 | 79 | 6.82e-20 | 82.8 |
| Msa0306450 | MtrunA17_Chr1g0163231 | 26.384 | 307 | 174 | 10 | 1 | 295 | 1 | 267 | 8.51e-20 | 87.8 |
| Msa0306450 | MtrunA17_Chr7g0233521 | 28.522 | 291 | 146 | 12 | 28 | 296 | 2 | 252 | 8.84e-20 | 87.4 |
| Msa0306450 | MtrunA17_Chr7g0233541 | 25.175 | 286 | 179 | 9 | 28 | 296 | 2 | 269 | 9.55e-20 | 87.4 |
| Msa0306450 | MtrunA17_Chr1g0163101 | 32.941 | 170 | 86 | 7 | 9 | 163 | 14 | 170 | 1.71e-19 | 84.3 |
| Msa0306450 | MtrunA17_Chr1g0154161 | 26.246 | 301 | 172 | 10 | 10 | 293 | 28 | 295 | 7.18e-19 | 85.5 |
| Msa0306450 | MtrunA17_Chr1g0171611 | 25.817 | 306 | 169 | 9 | 1 | 297 | 1 | 257 | 4.24e-18 | 82.8 |
| Msa0306450 | MtrunA17_Chr5g0419201 | 31.915 | 188 | 102 | 7 | 1 | 169 | 1 | 181 | 1.22e-17 | 79.3 |
| Msa0306450 | MtrunA17_Chr3g0103171 | 27.083 | 288 | 168 | 10 | 27 | 303 | 5 | 261 | 1.36e-17 | 80.9 |
| Msa0306450 | MtrunA17_Chr3g0103191 | 26.432 | 227 | 134 | 6 | 10 | 230 | 10 | 209 | 1.35e-16 | 77.8 |
| Msa0306450 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 82 | 7 | 28 | 177 | 2 | 150 | 1.48e-16 | 75.9 |
| Msa0306450 | MtrunA17_Chr7g0233531 | 24.828 | 290 | 158 | 9 | 28 | 296 | 2 | 252 | 2.14e-16 | 77.8 |
| Msa0306450 | MtrunA17_Chr1g0163191 | 37.405 | 131 | 62 | 6 | 1 | 122 | 2 | 121 | 9.63e-16 | 73.6 |
| Msa0306450 | MtrunA17_Chr1g0162161 | 36.111 | 144 | 74 | 8 | 28 | 161 | 4 | 139 | 1.06e-15 | 73.6 |
| Msa0306450 | MtrunA17_Chr1g0163081 | 34.711 | 121 | 63 | 5 | 28 | 136 | 6 | 122 | 2.67e-15 | 72.0 |
| Msa0306450 | MtrunA17_Chr1g0154191 | 23.780 | 328 | 201 | 9 | 10 | 293 | 20 | 342 | 1.08e-14 | 73.9 |
| Msa0306450 | MtrunA17_Chr1g0163121 | 32.558 | 129 | 71 | 6 | 26 | 142 | 9 | 133 | 2.99e-14 | 68.9 |
| Msa0306450 | MtrunA17_Chr4g0033961 | 36.842 | 114 | 69 | 2 | 12 | 125 | 6 | 116 | 4.44e-14 | 72.4 |
| Msa0306450 | MtrunA17_Chr3g0077411 | 24.026 | 308 | 164 | 11 | 1 | 293 | 251 | 503 | 6.76e-14 | 72.0 |
| Msa0306450 | MtrunA17_Chr3g0077411 | 30.345 | 145 | 90 | 4 | 11 | 148 | 24 | 164 | 5.45e-11 | 63.2 |
| Msa0306450 | MtrunA17_Chr1g0154151 | 25.899 | 278 | 166 | 10 | 44 | 293 | 36 | 301 | 1.67e-13 | 70.1 |
| Msa0306450 | MtrunA17_Chr1g0154131 | 25.817 | 306 | 165 | 11 | 23 | 300 | 193 | 464 | 7.03e-13 | 68.9 |
| Msa0306450 | MtrunA17_Chr1g0163241 | 32.394 | 142 | 75 | 6 | 15 | 147 | 14 | 143 | 1.37e-12 | 65.1 |
| Msa0306450 | MtrunA17_Chr3g0077461 | 31.013 | 158 | 95 | 4 | 11 | 155 | 236 | 392 | 1.49e-12 | 67.8 |
| Msa0306450 | MtrunA17_Chr1g0163141 | 29.508 | 183 | 105 | 8 | 26 | 188 | 9 | 187 | 1.08e-11 | 62.8 |
| Msa0306450 | MtrunA17_Chr1g0154171 | 25.078 | 319 | 191 | 11 | 13 | 293 | 23 | 331 | 1.11e-11 | 64.7 |
| Msa0306450 | MtrunA17_Chr5g0429931 | 24.648 | 284 | 146 | 10 | 27 | 300 | 10 | 235 | 1.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306450 | AT3G18990.1 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.12e-20 | 91.3 |
| Msa0306450 | AT3G18990.2 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.36e-20 | 91.3 |
| Msa0306450 | AT1G49475.1 | 37.097 | 124 | 70 | 4 | 5 | 122 | 26 | 147 | 3.43e-14 | 70.5 |
| Msa0306450 | AT3G18960.1 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.31e-13 | 68.9 |
| Msa0306450 | AT3G18960.2 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.40e-13 | 68.6 |
| Msa0306450 | AT4G01580.1 | 27.083 | 144 | 99 | 3 | 2 | 140 | 19 | 161 | 8.39e-13 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 2_3:-65280098 | Msa0306450:CDS |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 2_3:-65280145 | Msa0306450:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 2_3:+65281301 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 2_3:-65280056 | Msa0306450:CDS |
| TTACTGAAAAGAAAGTTTAT+TGG | 0.274412 | 2_3:-65281886 | Msa0306450:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 2_3:+65280203 | None:intergenic |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 2_3:-65281798 | Msa0306450:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 2_3:+65281608 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.299312 | 2_3:-65281885 | Msa0306450:CDS |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 2_3:+65281911 | None:intergenic |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 2_3:+65280051 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 2_3:-65281859 | Msa0306450:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 2_3:-65282180 | Msa0306450:intron |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 2_3:+65281953 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 2_3:-65280097 | Msa0306450:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 2_3:+65280101 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 2_3:+65281704 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 2_3:-65280144 | Msa0306450:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 2_3:-65281263 | Msa0306450:intron |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 2_3:+65281516 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 2_3:+65281705 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 2_3:-65281278 | Msa0306450:CDS |
| ATCCAATTAGTAGTCTCAAA+AGG | 0.494683 | 2_3:-65279243 | Msa0306450:intron |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 2_3:-65281287 | Msa0306450:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 2_3:-65282188 | Msa0306450:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 2_3:-65282233 | Msa0306450:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 2_3:+65281952 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 2_3:-65281657 | Msa0306450:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 2_3:-65280193 | Msa0306450:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 2_3:-65280185 | Msa0306450:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 2_3:-65280096 | Msa0306450:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 2_3:+65280060 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 2_3:+65281302 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 2_3:-65281944 | Msa0306450:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 2_3:-65280189 | Msa0306450:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 2_3:+65281912 | None:intergenic |
| GAGGATCCTTCATCTTCGCG+AGG | 0.649374 | 2_3:-65281638 | Msa0306450:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 2_3:-65280095 | Msa0306450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | - | chr2_3:65280805-65280824 | Msa0306450:intron | 10.0% |
| !! | ATAAAAAAAAATATTCACTA+CGG | - | chr2_3:65280888-65280907 | Msa0306450:intron | 10.0% |
| !!! | TAAAAAAAATGTTCTAAAAA+AGG | + | chr2_3:65281581-65281600 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATGAATAAGTA+AGG | - | chr2_3:65281983-65282002 | Msa0306450:intron | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | - | chr2_3:65280057-65280076 | Msa0306450:CDS | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | - | chr2_3:65280225-65280244 | Msa0306450:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | + | chr2_3:65280291-65280310 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | + | chr2_3:65280317-65280336 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATATTCACTAC+GGG | - | chr2_3:65280889-65280908 | Msa0306450:intron | 15.0% |
| !! | TAAAATTACCTTCAAAAATA+GGG | + | chr2_3:65281523-65281542 | None:intergenic | 15.0% |
| !! | ATAAAATTACCTTCAAAAAT+AGG | + | chr2_3:65281524-65281543 | None:intergenic | 15.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | + | chr2_3:65279575-65279594 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | - | chr2_3:65279579-65279598 | Msa0306450:intron | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | - | chr2_3:65279580-65279599 | Msa0306450:intron | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | + | chr2_3:65279875-65279894 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | - | chr2_3:65279958-65279977 | Msa0306450:intron | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | - | chr2_3:65279971-65279990 | Msa0306450:intron | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | - | chr2_3:65280071-65280090 | Msa0306450:CDS | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | + | chr2_3:65280469-65280488 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | + | chr2_3:65280725-65280744 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | + | chr2_3:65280791-65280810 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | + | chr2_3:65280792-65280811 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | - | chr2_3:65281179-65281198 | Msa0306450:intron | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | + | chr2_3:65281183-65281202 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | - | chr2_3:65281185-65281204 | Msa0306450:intron | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | + | chr2_3:65281367-65281386 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | - | chr2_3:65281367-65281386 | Msa0306450:CDS | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | - | chr2_3:65281368-65281387 | Msa0306450:CDS | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | - | chr2_3:65281369-65281388 | Msa0306450:CDS | 20.0% |
| !! | AATGGTAAAAACAAATATGA+TGG | + | chr2_3:65281554-65281573 | None:intergenic | 20.0% |
| !!! | ATCATACTTTCTTTTTTTTG+TGG | - | chr2_3:65281605-65281624 | Msa0306450:CDS | 20.0% |
| !! | GATAATGCATAAAATATGTA+AGG | + | chr2_3:65281653-65281672 | None:intergenic | 20.0% |
| !! | ACTAAACTACTTGAAAAAAA+GGG | + | chr2_3:65281948-65281967 | None:intergenic | 20.0% |
| !! | ACAATTCAATCTATATAGTT+TGG | + | chr2_3:65282080-65282099 | None:intergenic | 20.0% |
| !! | AGTTATTCACTTATTGATAT+AGG | - | chr2_3:65282159-65282178 | Msa0306450:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | + | chr2_3:65279261-65279280 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | - | chr2_3:65279418-65279437 | Msa0306450:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | - | chr2_3:65279606-65279625 | Msa0306450:intron | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | + | chr2_3:65279736-65279755 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | + | chr2_3:65279910-65279929 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | - | chr2_3:65280030-65280049 | Msa0306450:CDS | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | - | chr2_3:65280234-65280253 | Msa0306450:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | + | chr2_3:65280304-65280323 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | - | chr2_3:65280467-65280486 | Msa0306450:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | + | chr2_3:65280742-65280761 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | - | chr2_3:65280845-65280864 | Msa0306450:intron | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | - | chr2_3:65280846-65280865 | Msa0306450:intron | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | - | chr2_3:65281009-65281028 | Msa0306450:intron | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | - | chr2_3:65281010-65281029 | Msa0306450:intron | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | + | chr2_3:65281147-65281166 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | - | chr2_3:65281320-65281339 | Msa0306450:CDS | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | - | chr2_3:65281321-65281340 | Msa0306450:CDS | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | - | chr2_3:65281370-65281389 | Msa0306450:CDS | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | + | chr2_3:65281417-65281436 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | - | chr2_3:65281486-65281505 | Msa0306450:intron | 25.0% |
| !!! | TGTTCTAAAAAAGGTAGAAA+TGG | + | chr2_3:65281572-65281591 | None:intergenic | 25.0% |
| !!! | ATACTTTCTTTTTTTTGTGG+TGG | - | chr2_3:65281608-65281627 | Msa0306450:CDS | 25.0% |
| ! | CACTAAACTACTTGAAAAAA+AGG | + | chr2_3:65281949-65281968 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCAAGTAGTTTAG+TGG | - | chr2_3:65281947-65281966 | Msa0306450:CDS | 25.0% |
| ! | ATATAACAATGCATTGTCTA+GGG | - | chr2_3:65282034-65282053 | Msa0306450:intron | 25.0% |
| !!! | AGATTGAATTGTTTTGAACA+AGG | - | chr2_3:65282088-65282107 | Msa0306450:intron | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr2_3:65279617-65279636 | Msa0306450:intron | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | + | chr2_3:65279763-65279782 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | + | chr2_3:65279764-65279783 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | - | chr2_3:65279808-65279827 | Msa0306450:intron | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | - | chr2_3:65279975-65279994 | Msa0306450:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | + | chr2_3:65280051-65280070 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | - | chr2_3:65280202-65280221 | Msa0306450:CDS | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | - | chr2_3:65280344-65280363 | Msa0306450:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | - | chr2_3:65280479-65280498 | Msa0306450:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | + | chr2_3:65280494-65280513 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | + | chr2_3:65280645-65280664 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | + | chr2_3:65280710-65280729 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | + | chr2_3:65280711-65280730 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | + | chr2_3:65280843-65280862 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | - | chr2_3:65280894-65280913 | Msa0306450:intron | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | - | chr2_3:65280895-65280914 | Msa0306450:intron | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | - | chr2_3:65280998-65281017 | Msa0306450:intron | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | - | chr2_3:65281014-65281033 | Msa0306450:intron | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | - | chr2_3:65281234-65281253 | Msa0306450:intron | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | + | chr2_3:65281250-65281269 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | - | chr2_3:65281260-65281279 | Msa0306450:intron | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | + | chr2_3:65281408-65281427 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | - | chr2_3:65281409-65281428 | Msa0306450:intron | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | - | chr2_3:65281428-65281447 | Msa0306450:intron | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | + | chr2_3:65281500-65281519 | None:intergenic | 30.0% |
| !!! | TGATCATTCCCTATTTTTGA+AGG | - | chr2_3:65281512-65281531 | Msa0306450:CDS | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | + | chr2_3:65281648-65281667 | None:intergenic | 30.0% | |
| TTGCATGTATTGTGTTTGTA+TGG | + | chr2_3:65281721-65281740 | None:intergenic | 30.0% | |
| AGTAAAATGGTAAAGGCAAA+AGG | + | chr2_3:65281793-65281812 | None:intergenic | 30.0% | |
| ! | TTTACCATTTTACTGCTAGA+GGG | - | chr2_3:65281799-65281818 | Msa0306450:CDS | 30.0% |
| GAATGATATTGATACTTGCA+TGG | - | chr2_3:65281828-65281847 | Msa0306450:CDS | 30.0% | |
| GTTGTTACAATTTCAAGAAG+CGG | - | chr2_3:65281874-65281893 | Msa0306450:CDS | 30.0% | |
| GACAATGCATTGTTATATGT+AGG | + | chr2_3:65282032-65282051 | None:intergenic | 30.0% | |
| CATATAACAATGCATTGTCT+AGG | - | chr2_3:65282033-65282052 | Msa0306450:intron | 30.0% | |
| ATCCAATTAGTAGTCTCAAA+AGG | - | chr2_3:65282222-65282241 | Msa0306450:CDS | 30.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | + | chr2_3:65279290-65279309 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr2_3:65279291-65279310 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | + | chr2_3:65279516-65279535 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | - | chr2_3:65279516-65279535 | Msa0306450:intron | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr2_3:65279621-65279640 | Msa0306450:intron | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | - | chr2_3:65279667-65279686 | Msa0306450:intron | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | + | chr2_3:65279952-65279971 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | - | chr2_3:65280127-65280146 | Msa0306450:CDS | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | + | chr2_3:65280166-65280185 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | - | chr2_3:65280187-65280206 | Msa0306450:CDS | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | - | chr2_3:65280486-65280505 | Msa0306450:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | - | chr2_3:65280580-65280599 | Msa0306450:intron | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | + | chr2_3:65280646-65280665 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | + | chr2_3:65280771-65280790 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | + | chr2_3:65280772-65280791 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | - | chr2_3:65280896-65280915 | Msa0306450:intron | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | + | chr2_3:65281073-65281092 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | + | chr2_3:65281265-65281284 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | - | chr2_3:65281374-65281393 | Msa0306450:CDS | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | + | chr2_3:65281646-65281665 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | + | chr2_3:65281647-65281666 | None:intergenic | 35.0% | |
| ! | TGAGTTTAACTTAGTTGGCA+AGG | + | chr2_3:65281675-65281694 | None:intergenic | 35.0% |
| ! | CATCGTGAGTTTAACTTAGT+TGG | + | chr2_3:65281680-65281699 | None:intergenic | 35.0% |
| CTCTAGCAGTAAAATGGTAA+AGG | + | chr2_3:65281800-65281819 | None:intergenic | 35.0% | |
| ! | CTTTACCATTTTACTGCTAG+AGG | - | chr2_3:65281798-65281817 | Msa0306450:CDS | 35.0% |
| ! | ATGAATAAGTAAGGTGTCTG+AGG | - | chr2_3:65281992-65282011 | Msa0306450:intron | 35.0% |
| !!! | AGCCTTTTGAGACTACTAAT+TGG | + | chr2_3:65282227-65282246 | None:intergenic | 35.0% |
| TCTTCTCATGAACCTGATCA+TGG | - | chr2_3:65279232-65279251 | Msa0306450:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | + | chr2_3:65279247-65279266 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | - | chr2_3:65279277-65279296 | Msa0306450:intron | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | - | chr2_3:65279285-65279304 | Msa0306450:intron | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | + | chr2_3:65279515-65279534 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | - | chr2_3:65279521-65279540 | Msa0306450:intron | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | + | chr2_3:65279556-65279575 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | + | chr2_3:65279557-65279576 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | - | chr2_3:65279722-65279741 | Msa0306450:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | + | chr2_3:65279860-65279879 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | + | chr2_3:65279934-65279953 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | + | chr2_3:65280167-65280186 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | - | chr2_3:65280178-65280197 | Msa0306450:CDS | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | + | chr2_3:65280406-65280425 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | + | chr2_3:65280410-65280429 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | + | chr2_3:65280526-65280545 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | + | chr2_3:65280527-65280546 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | - | chr2_3:65280626-65280645 | Msa0306450:intron | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | + | chr2_3:65280701-65280720 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | - | chr2_3:65280971-65280990 | Msa0306450:intron | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | + | chr2_3:65281060-65281079 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | + | chr2_3:65281061-65281080 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | - | chr2_3:65281064-65281083 | Msa0306450:intron | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | + | chr2_3:65281068-65281087 | None:intergenic | 40.0% | |
| TGATACTTGCATGGTCAATG+AGG | - | chr2_3:65281837-65281856 | Msa0306450:CDS | 40.0% | |
| TTGCATGGTCAATGAGGAAA+AGG | - | chr2_3:65281843-65281862 | Msa0306450:CDS | 40.0% | |
| ATGGTCAATGAGGAAAAGGT+TGG | - | chr2_3:65281847-65281866 | Msa0306450:CDS | 40.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | + | chr2_3:65280383-65280402 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | + | chr2_3:65280407-65280426 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | + | chr2_3:65280411-65280430 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | - | chr2_3:65280424-65280443 | Msa0306450:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | - | chr2_3:65280425-65280444 | Msa0306450:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | + | chr2_3:65280429-65280448 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | + | chr2_3:65280521-65280540 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | + | chr2_3:65280525-65280544 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | + | chr2_3:65280549-65280568 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | + | chr2_3:65280612-65280631 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | - | chr2_3:65280970-65280989 | Msa0306450:intron | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | + | chr2_3:65280976-65280995 | None:intergenic | 45.0% | |
| !!! | TCTTTTTTTTGTGGTGGCCG+AGG | - | chr2_3:65281614-65281633 | Msa0306450:CDS | 45.0% |
| CCAACCCTCTAGCAGTAAAA+TGG | + | chr2_3:65281806-65281825 | None:intergenic | 45.0% | |
| ! | CCATTTTACTGCTAGAGGGT+TGG | - | chr2_3:65281803-65281822 | Msa0306450:CDS | 45.0% |
| !!! | TTTTTTAAATATATTTCAAA+TGG | - | chr2_3:65281745-65281764 | Msa0306450:intron | 5.0% |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | + | chr2_3:65279836-65279855 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | + | chr2_3:65280384-65280403 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | + | chr2_3:65280401-65280420 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | + | chr2_3:65280430-65280449 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | + | chr2_3:65280514-65280533 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | - | chr2_3:65280529-65280548 | Msa0306450:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | + | chr2_3:65280550-65280569 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | - | chr2_3:65280632-65280651 | Msa0306450:intron | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | + | chr2_3:65281055-65281074 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | - | chr2_3:65281272-65281291 | Msa0306450:CDS | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | - | chr2_3:65281276-65281295 | Msa0306450:CDS | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | - | chr2_3:65281280-65281299 | Msa0306450:CDS | 50.0% | |
| TCAAGAAGCGGCAGCTACAT+TGG | - | chr2_3:65281886-65281905 | Msa0306450:CDS | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | - | chr2_3:65279347-65279366 | Msa0306450:intron | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | + | chr2_3:65279351-65279370 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | - | chr2_3:65279348-65279367 | Msa0306450:intron | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | + | chr2_3:65279352-65279371 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | - | chr2_3:65279827-65279846 | Msa0306450:intron | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | + | chr2_3:65280396-65280415 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | + | chr2_3:65280397-65280416 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | + | chr2_3:65280539-65280558 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | - | chr2_3:65280593-65280612 | Msa0306450:intron | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | - | chr2_3:65280906-65280925 | Msa0306450:intron | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | - | chr2_3:65280907-65280926 | Msa0306450:intron | 55.0% | |
| AATCTCACCCCCGTCCCTAT+GGG | + | chr2_3:65280942-65280961 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | - | chr2_3:65280541-65280560 | Msa0306450:intron | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | + | chr2_3:65280596-65280615 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | + | chr2_3:65280600-65280619 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | - | chr2_3:65280924-65280943 | Msa0306450:intron | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | - | chr2_3:65280925-65280944 | Msa0306450:intron | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | - | chr2_3:65280929-65280948 | Msa0306450:intron | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | - | chr2_3:65280930-65280949 | Msa0306450:intron | 60.0% | |
| GAATCTCACCCCCGTCCCTA+TGG | + | chr2_3:65280943-65280962 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | + | chr2_3:65281052-65281071 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | + | chr2_3:65281634-65281653 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | - | chr2_3:65280931-65280950 | Msa0306450:intron | 65.0% | |
| ACCCCCGTCCCTATGGGTTC+GGG | + | chr2_3:65280936-65280955 | None:intergenic | 65.0% | |
| CACCCCCGTCCCTATGGGTT+CGG | + | chr2_3:65280937-65280956 | None:intergenic | 65.0% | |
| GCCCGAACCCATAGGGACGG+GGG | - | chr2_3:65280932-65280951 | Msa0306450:intron | 70.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | - | chr2_3:65281626-65281645 | Msa0306450:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65279229 | 65282258 | 65279229 | ID=Msa0306450;Name=Msa0306450 |
| chr2_3 | mRNA | 65279229 | 65282258 | 65279229 | ID=Msa0306450-mRNA-1;Parent=Msa0306450;Name=Msa0306450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.83|0.6|0.33|6|0|310 |
| chr2_3 | exon | 65282181 | 65282258 | 65282181 | ID=Msa0306450-mRNA-1:exon:21733;Parent=Msa0306450-mRNA-1 |
| chr2_3 | exon | 65281753 | 65281981 | 65281753 | ID=Msa0306450-mRNA-1:exon:21732;Parent=Msa0306450-mRNA-1 |
| chr2_3 | exon | 65281495 | 65281737 | 65281495 | ID=Msa0306450-mRNA-1:exon:21731;Parent=Msa0306450-mRNA-1 |
| chr2_3 | exon | 65281264 | 65281394 | 65281264 | ID=Msa0306450-mRNA-1:exon:21730;Parent=Msa0306450-mRNA-1 |
| chr2_3 | exon | 65280004 | 65280231 | 65280004 | ID=Msa0306450-mRNA-1:exon:21729;Parent=Msa0306450-mRNA-1 |
| chr2_3 | exon | 65279229 | 65279252 | 65279229 | ID=Msa0306450-mRNA-1:exon:21728;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65282181 | 65282258 | 65282181 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65281753 | 65281981 | 65281753 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65281495 | 65281737 | 65281495 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65281264 | 65281394 | 65281264 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65280004 | 65280231 | 65280004 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| chr2_3 | CDS | 65279229 | 65279252 | 65279229 | ID=Msa0306450-mRNA-1:cds;Parent=Msa0306450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
