AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0306480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306480 MtrunA17_Chr1g0167261 82.768 354 24 2 1 324 2 348 0.0 582
Msa0306480 MtrunA17_Chr1g0166821 70.541 370 60 4 1 324 2 368 0.0 513
Msa0306480 MtrunA17_Chr1g0187571 67.302 367 67 4 1 316 2 366 6.80e-173 488
Msa0306480 MtrunA17_Chr7g0261501 70.336 327 63 4 1 295 1 325 4.43e-161 457
Msa0306480 MtrunA17_Chr1g0183631 71.475 305 55 2 1 275 1 303 3.91e-157 447
Msa0306480 MtrunA17_Chr4g0071031 61.145 332 93 3 1 298 1 330 1.83e-144 415
Msa0306480 MtrunA17_Chr2g0329981 59.714 350 102 4 1 316 1 345 2.87e-144 415
Msa0306480 MtrunA17_Chr8g0342821 62.893 318 83 4 1 288 1 313 9.34e-141 406
Msa0306480 MtrunA17_Chr6g0486611 61.981 313 86 3 1 283 1 310 2.73e-137 395
Msa0306480 MtrunA17_Chr2g0299661 56.433 342 101 4 1 302 1 334 1.26e-136 395
Msa0306480 MtrunA17_Chr8g0390211 56.022 357 108 5 1 313 1 352 6.19e-136 392
Msa0306480 MtrunA17_Chr3g0140071 55.233 344 101 4 1 301 1 334 2.84e-129 375
Msa0306480 MtrunA17_Chr1g0146151 55.591 313 107 2 1 283 1 311 2.88e-122 357
Msa0306480 MtrunA17_Chr3g0140431 34.982 283 139 6 3 245 30 307 1.56e-44 160
Msa0306480 MtrunA17_Chr7g0214531 33.106 293 145 6 3 249 29 316 3.78e-44 159
Msa0306480 MtrunA17_Chr7g0253211 33.451 284 141 7 9 249 324 602 6.53e-42 155
Msa0306480 MtrunA17_Chr1g0146301 32.862 283 145 6 3 245 116 393 1.77e-41 152
Msa0306480 MtrunA17_Chr1g0213321 32.394 284 146 6 3 245 111 389 4.05e-41 152
Msa0306480 MtrunA17_Chr8g0340491 32.624 282 140 6 9 245 128 404 4.64e-38 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306480 AT3G23340.1 72.477 327 57 3 1 296 1 325 6.06e-169 477
Msa0306480 AT4G14340.1 64.420 371 77 6 1 318 7 375 2.88e-162 461
Msa0306480 AT4G14340.2 68.997 329 69 3 1 298 7 333 3.27e-161 454
Msa0306480 AT1G03930.1 66.866 335 73 3 1 299 1 333 3.78e-158 451
Msa0306480 AT4G28540.1 63.202 356 89 4 1 316 5 358 1.68e-157 449
Msa0306480 AT3G23340.2 69.419 327 53 4 1 296 1 311 9.64e-157 446
Msa0306480 AT5G44100.1 66.866 335 72 4 1 299 1 332 1.55e-155 444
Msa0306480 AT5G44100.2 66.866 335 72 4 1 299 1 332 1.55e-155 444
Msa0306480 AT5G43320.1 66.764 343 76 5 1 307 1 341 2.09e-155 444
Msa0306480 AT5G43320.2 67.560 336 72 4 1 301 1 334 1.23e-154 438
Msa0306480 AT5G43320.3 67.560 336 72 4 1 301 1 334 1.23e-154 438
Msa0306480 AT1G04440.1 61.351 370 86 6 1 319 1 364 4.91e-154 440
Msa0306480 AT2G19470.1 60.704 341 90 4 1 301 1 337 2.38e-144 414
Msa0306480 AT4G26100.1 59.821 336 99 3 1 302 1 334 4.84e-143 411
Msa0306480 AT1G72710.1 60.843 332 93 4 1 298 1 329 9.42e-142 409
Msa0306480 AT5G57015.1 61.830 317 88 3 1 286 1 315 2.06e-139 402
Msa0306480 AT4G28860.2 53.693 352 126 3 1 322 1 345 1.43e-131 380
Msa0306480 AT4G28880.3 59.355 310 94 2 1 280 1 308 8.35e-131 379
Msa0306480 AT4G28880.2 59.355 310 94 2 1 280 1 308 8.35e-131 379
Msa0306480 AT4G28880.1 59.355 310 94 2 1 280 1 308 8.35e-131 379
Msa0306480 AT4G28880.4 59.355 310 94 2 1 280 1 308 8.35e-131 379
Msa0306480 AT4G28860.1 53.693 352 126 3 1 322 1 345 9.11e-131 379
Msa0306480 AT4G08800.1 60.364 275 91 5 1 268 1 264 6.29e-111 324
Msa0306480 AT2G25760.2 36.170 282 133 7 9 245 107 386 1.64e-45 164
Msa0306480 AT2G25760.1 35.816 282 131 6 9 245 107 383 3.68e-45 163
Msa0306480 AT3G13670.1 32.765 293 146 7 3 249 129 416 3.36e-42 155
Msa0306480 AT3G03940.1 33.099 284 142 7 9 249 140 418 1.12e-41 154
Msa0306480 AT5G18190.2 33.099 284 142 7 9 249 130 408 4.57e-41 152
Msa0306480 AT5G18190.1 33.099 284 142 7 9 249 130 408 4.57e-41 152

Find 70 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTTGGGGAGCTTTATT+TGG 0.240792 2_3:+65315914 Msa0306480:CDS
CTAAATATTGGTACCTCTAT+TGG 0.252438 2_3:-65318606 None:intergenic
GTGATGGCTGTTGACCTTCT+TGG 0.294544 2_3:+65317205 Msa0306480:CDS
ATATCTTAAGAAACTCTTTC+GGG 0.305643 2_3:+65318883 Msa0306480:CDS
GTTATGATGGATATTGTTAT+TGG 0.306877 2_3:+65315855 None:intergenic
TTCAAGCTTGGCAGCAAACT+TGG 0.307902 2_3:+65315885 Msa0306480:CDS
CATATCTTAAGAAACTCTTT+CGG 0.313975 2_3:+65318882 Msa0306480:CDS
GCATTTGGGGAGCTTTATTT+GGG 0.341011 2_3:+65315915 Msa0306480:CDS
AGTTTGACTTTGTATTTGAT+TGG 0.343555 2_3:+65319023 Msa0306480:CDS
TTTAAGACTGGTTTCACATT+TGG 0.346834 2_3:-65319176 None:intergenic
AAACTTGGGAGTGGAGCATT+TGG 0.356250 2_3:+65315900 Msa0306480:CDS
TTCTTAAGATATGAATAATC+AGG 0.358182 2_3:-65318872 None:intergenic
TTTAACACTCACCTTGGAAT+TGG 0.359788 2_3:+65318239 Msa0306480:CDS
AACTTGGGAGTGGAGCATTT+GGG 0.378231 2_3:+65315901 Msa0306480:CDS
AGAAGAAATATGAATGGATA+AGG 0.378535 2_3:+65318565 Msa0306480:CDS
TCAGGAAGAAATAATGGCTC+TGG 0.388829 2_3:+65319512 Msa0306480:intron
AAAGCCCGAGAACTTTCTAA+TGG 0.388867 2_3:+65317457 Msa0306480:CDS
CAGACTGCAGCATAGGTCTT+TGG 0.407190 2_3:+65319538 Msa0306480:CDS
CAGGTGTACATTATTGACTA+TGG 0.410304 2_3:+65317864 Msa0306480:intron
GAGAACTTTCTAATGGGTTC+AGG 0.413955 2_3:+65317464 Msa0306480:CDS
AGAGGAAGTGGCTCTTAAAC+TGG 0.426091 2_3:+65316036 Msa0306480:CDS
TATGGTCCTGTGTTTAAGAC+TGG 0.431845 2_3:-65319188 None:intergenic
GTTATAGTCTTCCATGGCAT+GGG 0.446603 2_3:+65318517 Msa0306480:intron
TTAGAACTGGAACCACTTTG+TGG 0.457776 2_3:-65319061 None:intergenic
AGGGAAAACAAGAATCTCAT+TGG 0.467420 2_3:+65318197 Msa0306480:intron
AAGCCCGAGAACTTTCTAAT+GGG 0.468302 2_3:+65317458 Msa0306480:CDS
ATTTGATTGGACTAAATTGA+AGG 0.470659 2_3:+65319036 Msa0306480:CDS
CGTTCTAATCTCTCTTCATA+TGG 0.470694 2_3:-65319206 None:intergenic
TGAACCCATTAGAAAGTTCT+CGG 0.471922 2_3:-65317462 None:intergenic
ACCGCAATGATCGACAATAG+TGG 0.481921 2_3:-65318838 None:intergenic
TGTTATAGTCTTCCATGGCA+TGG 0.485138 2_3:+65318516 Msa0306480:intron
GAAGAAATATGAATGGATAA+GGG 0.486661 2_3:+65318566 Msa0306480:CDS
TTATATATTATGTACCTGTA+TGG 0.490253 2_3:-65317930 None:intergenic
TTAAATAAGTCTTCAAGACT+TGG 0.494574 2_3:-65317229 None:intergenic
TTCAGGCAGCAAGATAAATC+AGG 0.499327 2_3:+65317481 Msa0306480:CDS
CAGGAAGAAATAATGGCTCT+GGG 0.501297 2_3:+65319513 Msa0306480:intron
CGGGAACTATTCATTAGAGA+AGG 0.512534 2_3:+65318902 Msa0306480:CDS
AAAGAAGCTAACTCCAATAG+AGG 0.515041 2_3:+65318593 Msa0306480:CDS
ATGATGGATATTGTTATTGG+TGG 0.521288 2_3:+65315858 None:intergenic
CACAAAGGCACATACCATAC+AGG 0.527052 2_3:+65317916 Msa0306480:CDS
GAGAGATTAGAACGGCCTAC+AGG 0.527482 2_3:+65319215 Msa0306480:CDS
AGCTATACTTACTAGTTGAT+CGG 0.530567 2_3:-65317296 None:intergenic
CTGGGGACAGACTGCAGCAT+AGG 0.535067 2_3:+65319531 Msa0306480:CDS
TCAAGCTTGGCAGCAAACTT+GGG 0.536290 2_3:+65315886 Msa0306480:CDS
CTAAAGAGAAGAAATATGAA+TGG 0.541076 2_3:+65318559 Msa0306480:CDS
ATTGGTGGAAAATTCAAGCT+TGG 0.542077 2_3:+65315873 Msa0306480:CDS
CTTCAAGACTTGGTCCAAGA+AGG 0.548592 2_3:-65317219 None:intergenic
TGTGAAAACTCAAGAGGAAG+TGG 0.550394 2_3:+65316024 Msa0306480:CDS
TTCATGCCGTGCCCATGCCA+TGG 0.555518 2_3:-65318528 None:intergenic
CTTGGCAGCAAACTTGGGAG+TGG 0.558158 2_3:+65315891 Msa0306480:CDS
ATACCTCATATAAAGTGGTA+TGG 0.563349 2_3:+65317163 Msa0306480:intron
GAACCCATTAGAAAGTTCTC+GGG 0.565868 2_3:-65317461 None:intergenic
TGCACAACTTACCAATTCCA+AGG 0.568178 2_3:-65318250 None:intergenic
AGAGATGATCTAGAATCGCT+TGG 0.574171 2_3:+65318390 Msa0306480:CDS
ACTTGGGAGTGGAGCATTTG+GGG 0.577875 2_3:+65315902 Msa0306480:CDS
TATAAAGTGGTATGGAGTCG+AGG 0.580298 2_3:+65317171 Msa0306480:intron
AGTCTTCCATGGCATGGGCA+CGG 0.583186 2_3:+65318522 Msa0306480:intron
GTGAAACCAGTCTTAAACAC+AGG 0.585633 2_3:+65319182 Msa0306480:CDS
AATCATGGAAGAACATCTGA+AGG 0.597406 2_3:-65319578 None:intergenic
TCCACTATTGTCGATCATTG+CGG 0.598884 2_3:+65318837 Msa0306480:CDS
ATAAAGTGGTATGGAGTCGA+GGG 0.602710 2_3:+65317172 Msa0306480:intron
TGTTGATGTGAAAACTCAAG+AGG 0.614137 2_3:+65316018 Msa0306480:CDS
AAATATGACGTGAACTCTGT+TGG 0.622690 2_3:-65318815 None:intergenic
GTAGCGTATATGCACTATCG+TGG 0.653910 2_3:+65317416 Msa0306480:CDS
CGAGGGTGACTACAATGTGA+TGG 0.664692 2_3:+65317189 Msa0306480:CDS
ATTGTGATCTTAAAACACAA+AGG 0.669161 2_3:+65317901 Msa0306480:CDS
AAATTGAAGGATCCACAAAG+TGG 0.696056 2_3:+65319049 Msa0306480:CDS
ACATCTGAAGGTGCATACGA+CGG 0.698148 2_3:-65319566 None:intergenic
AGGAAGAAATAATGGCTCTG+GGG 0.722212 2_3:+65319514 Msa0306480:intron
CATATGAAGAGAGATTAGAA+CGG 0.732307 2_3:+65319207 Msa0306480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAATTTATTATAAA+TGG + chr2_3:65318983-65319002 Msa0306480:intron 0.0%
!!! ACATAATATATAATTTTGTT+TGG + chr2_3:65317940-65317959 Msa0306480:intron 10.0%
!!! CATAATATATAATTTTGTTT+GGG + chr2_3:65317941-65317960 Msa0306480:intron 10.0%
!! AATTTCTTATTCAAATAAAT+TGG + chr2_3:65318319-65318338 Msa0306480:intron 10.0%
!!! AAATTTTTAATTTCTTAAAC+AGG + chr2_3:65318775-65318794 Msa0306480:intron 10.0%
!!! CTAATAAATTTTATTTTAGT+CGG + chr2_3:65319439-65319458 Msa0306480:intron 10.0%
!!! TATGTTTTCTTTGAATAATT+TGG + chr2_3:65315978-65315997 Msa0306480:intron 15.0%
!!! ATGTTTTCTTTGAATAATTT+GGG + chr2_3:65315979-65315998 Msa0306480:intron 15.0%
!!! TTTTGCATATAATGTAATTT+AGG + chr2_3:65317522-65317541 Msa0306480:intron 15.0%
!!! TTAAATGCATTTATTTTTAC+CGG + chr2_3:65317696-65317715 Msa0306480:intron 15.0%
!! TTTAATTGAACTAAAGATTT+GGG - chr2_3:65318712-65318731 None:intergenic 15.0%
!! ATTTAATTGAACTAAAGATT+TGG - chr2_3:65318713-65318732 None:intergenic 15.0%
!! ATTTATTAAATTATCAGCAT+AGG - chr2_3:65319292-65319311 None:intergenic 15.0%
!! TATGCTGATAATTTAATAAA+TGG + chr2_3:65319291-65319310 Msa0306480:intron 15.0%
!! CGACTAAAATAAAATTTATT+AGG - chr2_3:65319441-65319460 None:intergenic 15.0%
!!! ATCTAAAACATTGGAATTTA+GGG - chr2_3:65316307-65316326 None:intergenic 20.0%
!!! TATCTAAAACATTGGAATTT+AGG - chr2_3:65316308-65316327 None:intergenic 20.0%
!!! TTTCACTATATCTAAAACAT+TGG - chr2_3:65316316-65316335 None:intergenic 20.0%
!!! CATTTTCCAATTAGTATTTA+AGG + chr2_3:65316375-65316394 Msa0306480:intron 20.0%
!!! GTTGAGTTATTTTATTGAAA+GGG - chr2_3:65316621-65316640 None:intergenic 20.0%
!!! TGTTGAGTTATTTTATTGAA+AGG - chr2_3:65316622-65316641 None:intergenic 20.0%
!!! TCTTTTTTCTACATTTTCAT+TGG + chr2_3:65316849-65316868 Msa0306480:intron 20.0%
!! CATTAAATACTCAAACTATT+AGG - chr2_3:65317119-65317138 None:intergenic 20.0%
!! AAAGATGTTCCTAATATAAT+CGG - chr2_3:65317622-65317641 None:intergenic 20.0%
!!! TTCATTCTTGTATTTGAAAT+AGG - chr2_3:65317663-65317682 None:intergenic 20.0%
!!! TACCTTTATTTTTTGTTTTC+CGG - chr2_3:65317718-65317737 None:intergenic 20.0%
!! TAAAGGTAGAAAAATACAAA+CGG + chr2_3:65317730-65317749 Msa0306480:intron 20.0%
!!! ATATAAATCTTTAGTTTTGC+CGG + chr2_3:65317758-65317777 Msa0306480:intron 20.0%
!! AAAATCATAAAGTTTGACAT+AGG - chr2_3:65317831-65317850 None:intergenic 20.0%
!! TTATATATTATGTACCTGTA+TGG - chr2_3:65317933-65317952 None:intergenic 20.0%
!! AATGTGTACGAAAATAATTA+TGG - chr2_3:65318132-65318151 None:intergenic 20.0%
!! TTAATTGAACTAAAGATTTG+GGG - chr2_3:65318711-65318730 None:intergenic 20.0%
!!! AATTTTCAACAGATGAAATT+TGG - chr2_3:65318760-65318779 None:intergenic 20.0%
!! TTCTTAAGATATGAATAATC+AGG - chr2_3:65318875-65318894 None:intergenic 20.0%
!!! TTTATAACTATCACAAGTTT+TGG + chr2_3:65319238-65319257 Msa0306480:intron 20.0%
!! ATGCATATTATTTAAACAAG+TGG - chr2_3:65319338-65319357 None:intergenic 20.0%
!!! TGTTATTTTAATTCTAGGAT+AGG + chr2_3:65319384-65319403 Msa0306480:intron 20.0%
!! TGTACCATGATTTTAAATTG+CGG + chr2_3:65316193-65316212 Msa0306480:intron 25.0%
! TTTGGTCCTTAAATACTAAT+TGG - chr2_3:65316384-65316403 None:intergenic 25.0%
! AACTCAACATATTTACTTGT+CGG + chr2_3:65316633-65316652 Msa0306480:intron 25.0%
! AAAGATTGTATTTCACATGA+AGG - chr2_3:65316801-65316820 None:intergenic 25.0%
! TATGAAAAGAAGAGTAAAAG+AGG - chr2_3:65316824-65316843 None:intergenic 25.0%
! TGTATGAGTCTAAATTGTAT+AGG + chr2_3:65316911-65316930 Msa0306480:intron 25.0%
!!! TGCTAATTTTTATTTGAAGC+CGG + chr2_3:65317139-65317158 Msa0306480:intron 25.0%
! TTAAATAAGTCTTCAAGACT+TGG - chr2_3:65317232-65317251 None:intergenic 25.0%
!!! AAGCATCAATACTGTTTTTA+AGG - chr2_3:65317275-65317294 None:intergenic 25.0%
! TACCGGAAAACAAAAAATAA+AGG + chr2_3:65317713-65317732 Msa0306480:intron 25.0%
! GGCAAAACTAAAGATTTATA+TGG - chr2_3:65317759-65317778 None:intergenic 25.0%
! TATAATCCCATCACTAAAAT+AGG + chr2_3:65317789-65317808 Msa0306480:intron 25.0%
!!! GATTTTCTTTTGATTATTGC+AGG + chr2_3:65317845-65317864 Msa0306480:intron 25.0%
! ATTGTGATCTTAAAACACAA+AGG + chr2_3:65317901-65317920 Msa0306480:CDS 25.0%
! ATAAAGGGAACAAAATACAA+AGG - chr2_3:65318050-65318069 None:intergenic 25.0%
! GTTGAAACAAAACGTATAAA+GGG - chr2_3:65318065-65318084 None:intergenic 25.0%
! AGTTGAAACAAAACGTATAA+AGG - chr2_3:65318066-65318085 None:intergenic 25.0%
!!! AATTTTGTTATAGTCTTCCA+TGG + chr2_3:65318511-65318530 Msa0306480:intron 25.0%
! CTAAAGAGAAGAAATATGAA+TGG + chr2_3:65318559-65318578 Msa0306480:CDS 25.0%
! AGAAGAAATATGAATGGATA+AGG + chr2_3:65318565-65318584 Msa0306480:CDS 25.0%
! GAAGAAATATGAATGGATAA+GGG + chr2_3:65318566-65318585 Msa0306480:CDS 25.0%
! AGCTTCTTGAAACTAAATAT+TGG - chr2_3:65318621-65318640 None:intergenic 25.0%
! AACATGATGCAGAAAAATAA+GGG - chr2_3:65318670-65318689 None:intergenic 25.0%
! AAACATGATGCAGAAAAATA+AGG - chr2_3:65318671-65318690 None:intergenic 25.0%
! CATATCTTAAGAAACTCTTT+CGG + chr2_3:65318882-65318901 Msa0306480:CDS 25.0%
! ATATCTTAAGAAACTCTTTC+GGG + chr2_3:65318883-65318902 Msa0306480:CDS 25.0%
!! TTTGCAAGAATTTTCAAATG+AGG - chr2_3:65318959-65318978 None:intergenic 25.0%
!! AGTTTGACTTTGTATTTGAT+TGG + chr2_3:65319023-65319042 Msa0306480:CDS 25.0%
! ATTTGATTGGACTAAATTGA+AGG + chr2_3:65319036-65319055 Msa0306480:CDS 25.0%
!!! GTTGGTGTTATTTTAATTCT+AGG + chr2_3:65319379-65319398 Msa0306480:intron 25.0%
TGTATAGGTATGATGTGTAT+GGG - chr2_3:65316589-65316608 None:intergenic 30.0%
!! AGTTATTTTATTGAAAGGGC+AGG - chr2_3:65316617-65316636 None:intergenic 30.0%
ACTCAACATATTTACTTGTC+GGG + chr2_3:65316634-65316653 Msa0306480:intron 30.0%
AAATTGTATAGGCTTCTTCA+AGG + chr2_3:65316922-65316941 Msa0306480:intron 30.0%
CCGCTTATTAACAAAATTGT+CGG - chr2_3:65316994-65317013 None:intergenic 30.0%
! CCGACAATTTTGTTAATAAG+CGG + chr2_3:65316991-65317010 Msa0306480:intron 30.0%
ATACCTCATATAAAGTGGTA+TGG + chr2_3:65317163-65317182 Msa0306480:intron 30.0%
AGCTATACTTACTAGTTGAT+CGG - chr2_3:65317299-65317318 None:intergenic 30.0%
TTTGCTTCATGCTAGAAATA+TGG - chr2_3:65317344-65317363 None:intergenic 30.0%
TCTAGTTAAGATAGTACACA+TGG - chr2_3:65317388-65317407 None:intergenic 30.0%
!!! ACACAACCTATTTTAGTGAT+GGG - chr2_3:65317798-65317817 None:intergenic 30.0%
!!! AACACAACCTATTTTAGTGA+TGG - chr2_3:65317799-65317818 None:intergenic 30.0%
!!! GATCACAATACTTTTTTGCA+AGG - chr2_3:65317890-65317909 None:intergenic 30.0%
!! GTACTAATGTACTTTTTGAG+AGG + chr2_3:65318417-65318436 Msa0306480:CDS 30.0%
!! TAATGTACTTTTTGAGAGGA+AGG + chr2_3:65318421-65318440 Msa0306480:CDS 30.0%
AATGTATAATGACGAGTACA+AGG - chr2_3:65318476-65318495 None:intergenic 30.0%
CTAAATATTGGTACCTCTAT+TGG - chr2_3:65318609-65318628 None:intergenic 30.0%
! TAGTTTCAAGAAGCTCTTTT+AGG + chr2_3:65318626-65318645 Msa0306480:intron 30.0%
CTAAAGATTTGGGGATTAAA+AGG - chr2_3:65318702-65318721 None:intergenic 30.0%
!! TTTAAGACTGGTTTCACATT+TGG - chr2_3:65319179-65319198 None:intergenic 30.0%
CATATGAAGAGAGATTAGAA+CGG + chr2_3:65319207-65319226 Msa0306480:CDS 30.0%
TGTGATAGTTATAAACCTGT+AGG - chr2_3:65319233-65319252 None:intergenic 30.0%
TATATGATACACTGCAAAGT+TGG + chr2_3:65319361-65319380 Msa0306480:intron 30.0%
!! GCATTTTCAGGAAGAAATAA+TGG + chr2_3:65319506-65319525 Msa0306480:intron 30.0%
ATTGGTGGAAAATTCAAGCT+TGG + chr2_3:65315873-65315892 Msa0306480:CDS 35.0%
! ATTTGGGACTTGTTTGTTTC+AGG + chr2_3:65315995-65316014 Msa0306480:intron 35.0%
TGTTGATGTGAAAACTCAAG+AGG + chr2_3:65316018-65316037 Msa0306480:CDS 35.0%
TGTCACTCCAATTTCTATGT+AGG + chr2_3:65316082-65316101 Msa0306480:intron 35.0%
GTCACTCCAATTTCTATGTA+GGG + chr2_3:65316083-65316102 Msa0306480:intron 35.0%
! CCATGATTTTAAATTGCGGT+CGG + chr2_3:65316197-65316216 Msa0306480:intron 35.0%
! CGTCTAAAATATTGCTGATG+TGG + chr2_3:65316232-65316251 Msa0306480:intron 35.0%
CTAAAATATTGCTGATGTGG+TGG + chr2_3:65316235-65316254 Msa0306480:intron 35.0%
CAAAGTTCACATCGCAATTA+CGG - chr2_3:65316281-65316300 None:intergenic 35.0%
CAAAGTCAGACTCTACTATA+GGG + chr2_3:65316400-65316419 Msa0306480:intron 35.0%
! TTAAATTGCGGTTCTAGTCA+CGG - chr2_3:65316552-65316571 None:intergenic 35.0%
GTGTATAGGTATGATGTGTA+TGG - chr2_3:65316590-65316609 None:intergenic 35.0%
! TACATTTTCATTGGCATCTC+AGG + chr2_3:65316858-65316877 Msa0306480:intron 35.0%
TTAGACTCATACAGAAGTTG+AGG - chr2_3:65316904-65316923 None:intergenic 35.0%
ACTCCATACCACTTTATATG+AGG - chr2_3:65317169-65317188 None:intergenic 35.0%
AGTACACATGGAAGGTAAAT+CGG - chr2_3:65317376-65317395 None:intergenic 35.0%
GTTAAGATAGTACACATGGA+AGG - chr2_3:65317384-65317403 None:intergenic 35.0%
TGAACCCATTAGAAAGTTCT+CGG - chr2_3:65317465-65317484 None:intergenic 35.0%
ACCTGTTGTCCGATTATATT+AGG + chr2_3:65317610-65317629 Msa0306480:intron 35.0%
TCCTAATATAATCGGACAAC+AGG - chr2_3:65317614-65317633 None:intergenic 35.0%
! CAGGTGTACATTATTGACTA+TGG + chr2_3:65317864-65317883 Msa0306480:intron 35.0%
AGGGAAAACAAGAATCTCAT+TGG + chr2_3:65318197-65318216 Msa0306480:intron 35.0%
TTTAACACTCACCTTGGAAT+TGG + chr2_3:65318239-65318258 Msa0306480:CDS 35.0%
AAAGAAGCTAACTCCAATAG+AGG + chr2_3:65318593-65318612 Msa0306480:CDS 35.0%
AAATATGACGTGAACTCTGT+TGG - chr2_3:65318818-65318837 None:intergenic 35.0%
! ATTATAAATGGCGCTTTTGC+AGG + chr2_3:65318995-65319014 Msa0306480:intron 35.0%
AAATTGAAGGATCCACAAAG+TGG + chr2_3:65319049-65319068 Msa0306480:CDS 35.0%
!!! ACTCACACTTGTTTTAGAAC+TGG - chr2_3:65319077-65319096 None:intergenic 35.0%
CGTTCTAATCTCTCTTCATA+TGG - chr2_3:65319209-65319228 None:intergenic 35.0%
TTTGAAAAGCCGTTGATCAT+AGG + chr2_3:65319409-65319428 Msa0306480:intron 35.0%
GAGATTCGAGATAGATTATG+AGG + chr2_3:65319473-65319492 Msa0306480:intron 35.0%
ATAGATTATGAGGTGAGGTT+GGG + chr2_3:65319483-65319502 Msa0306480:intron 35.0%
!! AGCATTTGGGGAGCTTTATT+TGG + chr2_3:65315914-65315933 Msa0306480:CDS 40.0%
!! GCATTTGGGGAGCTTTATTT+GGG + chr2_3:65315915-65315934 Msa0306480:CDS 40.0%
TGTGAAAACTCAAGAGGAAG+TGG + chr2_3:65316024-65316043 Msa0306480:CDS 40.0%
ACTGGTGAGTGAAGTTGTTA+TGG + chr2_3:65316054-65316073 Msa0306480:intron 40.0%
! TTTTGTCCAACTACGTGCAA+GGG - chr2_3:65316152-65316171 None:intergenic 40.0%
! ATTTTGTCCAACTACGTGCA+AGG - chr2_3:65316153-65316172 None:intergenic 40.0%
GCACGTAGTTGGACAAAATA+TGG + chr2_3:65316154-65316173 Msa0306480:intron 40.0%
! CCGACCGCAATTTAAAATCA+TGG - chr2_3:65316200-65316219 None:intergenic 40.0%
CCTATAGTAGAGTCTGACTT+TGG - chr2_3:65316402-65316421 None:intergenic 40.0%
CCAAAGTCAGACTCTACTAT+AGG + chr2_3:65316399-65316418 Msa0306480:intron 40.0%
GTGACTAGAACCGCAATTTA+AGG + chr2_3:65316551-65316570 Msa0306480:intron 40.0%
TTGTATAGGCTTCTTCAAGG+AGG + chr2_3:65316925-65316944 Msa0306480:intron 40.0%
! TACCTGTTCAGCTTCTTTTC+AGG + chr2_3:65316965-65316984 Msa0306480:intron 40.0%
ATATCTGTGCTCTAGCATAG+TGG + chr2_3:65317016-65317035 Msa0306480:intron 40.0%
CCACTTTATATGAGGTATGC+CGG - chr2_3:65317161-65317180 None:intergenic 40.0%
TATAAAGTGGTATGGAGTCG+AGG + chr2_3:65317171-65317190 Msa0306480:intron 40.0%
ATAAAGTGGTATGGAGTCGA+GGG + chr2_3:65317172-65317191 Msa0306480:intron 40.0%
AAAGCCCGAGAACTTTCTAA+TGG + chr2_3:65317457-65317476 Msa0306480:CDS 40.0%
AAGCCCGAGAACTTTCTAAT+GGG + chr2_3:65317458-65317477 Msa0306480:CDS 40.0%
GAACCCATTAGAAAGTTCTC+GGG - chr2_3:65317464-65317483 None:intergenic 40.0%
!! GAGAACTTTCTAATGGGTTC+AGG + chr2_3:65317464-65317483 Msa0306480:CDS 40.0%
TTCAGGCAGCAAGATAAATC+AGG + chr2_3:65317481-65317500 Msa0306480:CDS 40.0%
ATTTAGGCACGTATCTGCTA+AGG + chr2_3:65317538-65317557 Msa0306480:intron 40.0%
CTAGTGACAGATGTAAGTCA+TGG - chr2_3:65317571-65317590 None:intergenic 40.0%
ATGGGATTATACAATGTCGC+CGG - chr2_3:65317780-65317799 None:intergenic 40.0%
TTCCACTGATGTTGCATGAA+TGG + chr2_3:65318153-65318172 Msa0306480:intron 40.0%
! TGCACTGTTTTACTCTCAAC+AGG + chr2_3:65318177-65318196 Msa0306480:intron 40.0%
! GCACTGTTTTACTCTCAACA+GGG + chr2_3:65318178-65318197 Msa0306480:intron 40.0%
!! GCAAGTTTTAACACTCACCT+TGG + chr2_3:65318233-65318252 Msa0306480:CDS 40.0%
TGCACAACTTACCAATTCCA+AGG - chr2_3:65318253-65318272 None:intergenic 40.0%
! AGAGATGATCTAGAATCGCT+TGG + chr2_3:65318390-65318409 Msa0306480:CDS 40.0%
!! GTACTTTTTGAGAGGAAGGT+TGG + chr2_3:65318425-65318444 Msa0306480:intron 40.0%
!! TTTTTGAGAGGAAGGTTGGT+TGG + chr2_3:65318429-65318448 Msa0306480:intron 40.0%
TGTTATAGTCTTCCATGGCA+TGG + chr2_3:65318516-65318535 Msa0306480:intron 40.0%
GTTATAGTCTTCCATGGCAT+GGG + chr2_3:65318517-65318536 Msa0306480:intron 40.0%
TCCACTATTGTCGATCATTG+CGG + chr2_3:65318837-65318856 Msa0306480:CDS 40.0%
CGGGAACTATTCATTAGAGA+AGG + chr2_3:65318902-65318921 Msa0306480:CDS 40.0%
TTAGAACTGGAACCACTTTG+TGG - chr2_3:65319064-65319083 None:intergenic 40.0%
GTGAAACCAGTCTTAAACAC+AGG + chr2_3:65319182-65319201 Msa0306480:CDS 40.0%
! TATGGTCCTGTGTTTAAGAC+TGG - chr2_3:65319191-65319210 None:intergenic 40.0%
! AGGAGTTAGCCTATGATCAA+CGG - chr2_3:65319421-65319440 None:intergenic 40.0%
TCGAGATAGATTATGAGGTG+AGG + chr2_3:65319478-65319497 Msa0306480:intron 40.0%
GATAGATTATGAGGTGAGGT+TGG + chr2_3:65319482-65319501 Msa0306480:intron 40.0%
TAGATTATGAGGTGAGGTTG+GGG + chr2_3:65319484-65319503 Msa0306480:intron 40.0%
TCAGGAAGAAATAATGGCTC+TGG + chr2_3:65319512-65319531 Msa0306480:intron 40.0%
CAGGAAGAAATAATGGCTCT+GGG + chr2_3:65319513-65319532 Msa0306480:intron 40.0%
! AGGAAGAAATAATGGCTCTG+GGG + chr2_3:65319514-65319533 Msa0306480:intron 40.0%
TTCAAGCTTGGCAGCAAACT+TGG + chr2_3:65315885-65315904 Msa0306480:CDS 45.0%
TCAAGCTTGGCAGCAAACTT+GGG + chr2_3:65315886-65315905 Msa0306480:CDS 45.0%
! AAACTTGGGAGTGGAGCATT+TGG + chr2_3:65315900-65315919 Msa0306480:CDS 45.0%
! AACTTGGGAGTGGAGCATTT+GGG + chr2_3:65315901-65315920 Msa0306480:CDS 45.0%
AGAGGAAGTGGCTCTTAAAC+TGG + chr2_3:65316036-65316055 Msa0306480:CDS 45.0%
CGGCATCCCTACATAGAAAT+TGG - chr2_3:65316092-65316111 None:intergenic 45.0%
TTTCTATGTAGGGATGCCGA+TGG + chr2_3:65316093-65316112 Msa0306480:intron 45.0%
TTCTATGTAGGGATGCCGAT+GGG + chr2_3:65316094-65316113 Msa0306480:intron 45.0%
TCTACCAAAACCCTACCCAT+CGG - chr2_3:65316112-65316131 None:intergenic 45.0%
TTTGTCCAACTACGTGCAAG+GGG - chr2_3:65316151-65316170 None:intergenic 45.0%
! CGAGTCATGGCCTTAAATTG+CGG - chr2_3:65316564-65316583 None:intergenic 45.0%
ATGTGTATGGGTACGAGTCA+TGG - chr2_3:65316577-65316596 None:intergenic 45.0%
AAAGGGCAGGTGATGTGTAT+AGG - chr2_3:65316604-65316623 None:intergenic 45.0%
TGCCTGAAAAGAAGCTGAAC+AGG - chr2_3:65316970-65316989 None:intergenic 45.0%
CCGGCATACCTCATATAAAG+TGG + chr2_3:65317158-65317177 Msa0306480:intron 45.0%
! CTTCAAGACTTGGTCCAAGA+AGG - chr2_3:65317222-65317241 None:intergenic 45.0%
GTAGCGTATATGCACTATCG+TGG + chr2_3:65317416-65317435 Msa0306480:CDS 45.0%
! CACAAAGGCACATACCATAC+AGG + chr2_3:65317916-65317935 Msa0306480:CDS 45.0%
AGCCATTCATGCAACATCAG+TGG - chr2_3:65318158-65318177 None:intergenic 45.0%
ACCGCAATGATCGACAATAG+TGG - chr2_3:65318841-65318860 None:intergenic 45.0%
! ACATCTGAAGGTGCATACGA+CGG - chr2_3:65319569-65319588 None:intergenic 45.0%
!! TACAAAATATTATTATATAT+CGG + chr2_3:65317079-65317098 Msa0306480:intron 5.0%
! ACTTGGGAGTGGAGCATTTG+GGG + chr2_3:65315902-65315921 Msa0306480:CDS 50.0%
TCGCAATTACGGTGCCTTTG+CGG - chr2_3:65316270-65316289 None:intergenic 50.0%
CACTGATGCGACTCGCATTA+AGG - chr2_3:65316502-65316521 None:intergenic 50.0%
CGAGGGTGACTACAATGTGA+TGG + chr2_3:65317189-65317208 Msa0306480:CDS 50.0%
GTGATGGCTGTTGACCTTCT+TGG + chr2_3:65317205-65317224 Msa0306480:CDS 50.0%
GAGAGATTAGAACGGCCTAC+AGG + chr2_3:65319215-65319234 Msa0306480:CDS 50.0%
CAGACTGCAGCATAGGTCTT+TGG + chr2_3:65319538-65319557 Msa0306480:CDS 50.0%
CTTGGCAGCAAACTTGGGAG+TGG + chr2_3:65315891-65315910 Msa0306480:CDS 55.0%
ATGTAGGGATGCCGATGGGT+AGG + chr2_3:65316098-65316117 Msa0306480:intron 55.0%
TGTAGGGATGCCGATGGGTA+GGG + chr2_3:65316099-65316118 Msa0306480:intron 55.0%
! GATGCCGATGGGTAGGGTTT+TGG + chr2_3:65316105-65316124 Msa0306480:intron 55.0%
TCTGTCCCCTTGCACGTAGT+TGG + chr2_3:65316143-65316162 Msa0306480:intron 55.0%
TTACGGTGCCTTTGCGGTTG+CGG - chr2_3:65316264-65316283 None:intergenic 55.0%
AGTCTTCCATGGCATGGGCA+CGG + chr2_3:65318522-65318541 Msa0306480:intron 55.0%
!! GGTGAGGTTGGGGCATTTTC+AGG + chr2_3:65319494-65319513 Msa0306480:intron 55.0%
CTACGTGCAAGGGGACAGAC+AGG - chr2_3:65316142-65316161 None:intergenic 60.0%
TTCATGCCGTGCCCATGCCA+TGG - chr2_3:65318531-65318550 None:intergenic 60.0%
CTGGGGACAGACTGCAGCAT+AGG + chr2_3:65319531-65319550 Msa0306480:CDS 60.0%
GGTGGCCACCGCAACCGCAA+AGG + chr2_3:65316253-65316272 Msa0306480:intron 70.0%
CGGTGCCTTTGCGGTTGCGG+TGG - chr2_3:65316261-65316280 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 65315861 65319598 65315861 ID=Msa0306480;Name=Msa0306480
chr2_3 mRNA 65315861 65319598 65315861 ID=Msa0306480-mRNA-1;Parent=Msa0306480;Name=Msa0306480-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0.90|0.91|12|0|324
chr2_3 exon 65315861 65315936 65315861 ID=Msa0306480-mRNA-1:exon:21741;Parent=Msa0306480-mRNA-1
chr2_3 exon 65316017 65316057 65316017 ID=Msa0306480-mRNA-1:exon:21742;Parent=Msa0306480-mRNA-1
chr2_3 exon 65317178 65317306 65317178 ID=Msa0306480-mRNA-1:exon:21743;Parent=Msa0306480-mRNA-1
chr2_3 exon 65317407 65317502 65317407 ID=Msa0306480-mRNA-1:exon:21744;Parent=Msa0306480-mRNA-1
chr2_3 exon 65317867 65317937 65317867 ID=Msa0306480-mRNA-1:exon:21745;Parent=Msa0306480-mRNA-1
chr2_3 exon 65318199 65318260 65318199 ID=Msa0306480-mRNA-1:exon:21746;Parent=Msa0306480-mRNA-1
chr2_3 exon 65318379 65318442 65318379 ID=Msa0306480-mRNA-1:exon:21747;Parent=Msa0306480-mRNA-1
chr2_3 exon 65318524 65318614 65318524 ID=Msa0306480-mRNA-1:exon:21748;Parent=Msa0306480-mRNA-1
chr2_3 exon 65318797 65318923 65318797 ID=Msa0306480-mRNA-1:exon:21749;Parent=Msa0306480-mRNA-1
chr2_3 exon 65319017 65319090 65319017 ID=Msa0306480-mRNA-1:exon:21750;Parent=Msa0306480-mRNA-1
chr2_3 exon 65319176 65319236 65319176 ID=Msa0306480-mRNA-1:exon:21751;Parent=Msa0306480-mRNA-1
chr2_3 exon 65319516 65319598 65319516 ID=Msa0306480-mRNA-1:exon:21752;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65315861 65315936 65315861 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65316017 65316057 65316017 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65317178 65317306 65317178 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65317407 65317502 65317407 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65317867 65317937 65317867 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65318199 65318260 65318199 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65318379 65318442 65318379 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65318524 65318614 65318524 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65318797 65318923 65318797 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65319017 65319090 65319017 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65319176 65319236 65319176 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
chr2_3 CDS 65319516 65319598 65319516 ID=Msa0306480-mRNA-1:cds;Parent=Msa0306480-mRNA-1
Gene Sequence

>Msa0306480

ATGGATATTGTTATTGGTGGAAAATTCAAGCTTGGCAGCAAACTTGGGAGTGGAGCATTTGGGGAGCTTTATTTGGGTGTTGATGTGAAAACTCAAGAGGAAGTGGCTCTTAAACTGTGGTATGGAGTCGAGGGTGACTACAATGTGATGGCTGTTGACCTTCTTGGACCAAGTCTTGAAGACTTATTTAATTACTGCAATAGAAAATTCTCCTTAAAAACAGTATTGATGCTTGCCGATCAACTAATAAATAGAGTAGCGTATATGCACTATCGTGGATTTCTGCATCGTGATGTAAAGCCCGAGAACTTTCTAATGGGTTCAGGCAGCAAGATAAATCAGGTGTACATTATTGACTATGGCCTTGCAAAAAAGTATTGTGATCTTAAAACACAAAGGCACATACCATACAGGGAAAACAAGAATCTCATTGGAACTGCTCAATATGCAAGTTTTAACACTCACCTTGGAATTGAACAAAGTAGAAGAGATGATCTAGAATCGCTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCATGGGCACGGCATGAAAGCTGTCACTAAAGAGAAGAAATATGAATGGATAAGGGAAAAAAAGAAGCTAACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAGTTCACGTCATATTTCCACTATTGTCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAAACTCTTTCGGGAACTATTCATTAGAGAAGGTTATCAGTTTGACTTTGTATTTGATTGGACTAAATTGAAGGATCCACAAAGTGGTTCCAGTTCTAAAACAAGTCCAAATGTGAAACCAGTCTTAAACACAGGACCATATGAAGAGAGATTAGAACGGCCTACAGGAAGAAATAATGGCTCTGGGGACAGACTGCAGCATAGGTCTTTGGCAGATCCGTCGTATGCACCTTCAGATGTTCTTCCATGA

Protein sequence

>Msa0306480

MDIVIGGKFKLGSKLGSGAFGELYLGVDVKTQEEVALKLWYGVEGDYNVMAVDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVAYMHYRGFLHRDVKPENFLMGSGSKINQVYIIDYGLAKKYCDLKTQRHIPYRENKNLIGTAQYASFNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWHGHGMKAVTKEKKYEWIREKKKLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKKLFRELFIREGYQFDFVFDWTKLKDPQSGSSSKTSPNVKPVLNTGPYEERLERPTGRNNGSGDRLQHRSLADPSYAPSDVLP*