AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0306860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306860 MtrunA17_Chr7g0233161 90.947 243 22 0 1 243 108 350 1.55e-164 461
Msa0306860 MtrunA17_Chr7g0228531 64.184 282 93 3 2 283 31 304 7.23e-127 368
Msa0306860 MtrunA17_Chr7g0228481 64.234 274 96 2 2 275 31 302 1.31e-124 362
Msa0306860 MtrunA17_Chr4g0046181 69.421 242 74 0 2 243 31 272 3.50e-108 315
Msa0306860 MtrunA17_Chr7g0228401 44.477 344 119 4 2 283 31 364 1.73e-83 259
Msa0306860 MtrunA17_Chr7g0233061 41.600 250 122 4 35 283 37 263 8.13e-52 173
Msa0306860 MtrunA17_Chr4g0058991 63.441 93 28 1 191 283 208 294 6.16e-35 131
Msa0306860 MtrunA17_Chr3g0117511 63.265 98 30 1 186 283 177 268 1.62e-34 130
Msa0306860 MtrunA17_Chr5g0429661 63.529 85 31 0 191 275 121 205 2.47e-34 127
Msa0306860 MtrunA17_Chr1g0177901 62.195 82 25 1 202 283 4 79 1.42e-29 111
Msa0306860 MtrunA17_Chr7g0238631 61.176 85 33 0 187 271 108 192 2.18e-29 117
Msa0306860 MtrunA17_Chr7g0238631 35.955 89 56 1 190 277 59 147 1.24e-11 65.1
Msa0306860 MtrunA17_Chr1g0157731 56.471 85 37 0 187 271 86 170 3.39e-29 117
Msa0306860 MtrunA17_Chr3g0139671 57.647 85 36 0 187 271 80 164 7.12e-29 116
Msa0306860 MtrunA17_Chr5g0397841 53.086 81 38 0 191 271 109 189 2.19e-24 102
Msa0306860 MtrunA17_Chr4g0008551 47.561 82 43 0 190 271 36 117 5.44e-22 94.4
Msa0306860 MtrunA17_Chr5g0401731 42.857 98 56 0 178 275 1 98 3.96e-21 91.3
Msa0306860 MtrunA17_Chr3g0133601 43.373 83 47 0 189 271 34 116 2.06e-20 87.4
Msa0306860 MtrunA17_Chr3g0104501 69.811 53 16 0 191 243 132 184 5.92e-20 85.5
Msa0306860 MtrunA17_Chr6g0460671 48.148 81 42 0 191 271 98 178 1.35e-19 87.4
Msa0306860 MtrunA17_Chr4g0022901 45.882 85 45 1 192 275 15 99 1.98e-19 85.9
Msa0306860 MtrunA17_Chr4g0022931 45.882 85 45 1 192 275 15 99 2.50e-19 85.5
Msa0306860 MtrunA17_Chr6g0480581 46.429 84 45 0 192 275 4 87 2.80e-19 84.7
Msa0306860 MtrunA17_Chr5g0417621 48.750 80 41 0 192 271 134 213 3.36e-19 87.0
Msa0306860 MtrunA17_Chr4g0053431 42.529 87 50 0 189 275 2 88 3.60e-19 85.1
Msa0306860 MtrunA17_Chr4g0022911 44.706 85 46 1 192 275 15 99 3.98e-19 85.5
Msa0306860 MtrunA17_Chr6g0460661 45.238 84 46 0 192 275 16 99 1.14e-18 81.3
Msa0306860 MtrunA17_Chr4g0042501 46.250 80 43 0 192 271 105 184 1.15e-18 85.5
Msa0306860 MtrunA17_Chr1g0154031 46.250 80 42 1 192 270 78 157 3.36e-18 84.0
Msa0306860 MtrunA17_Chr3g0099141 36.364 110 69 1 162 270 12 121 3.88e-18 79.3
Msa0306860 MtrunA17_Chr5g0437321 43.678 87 49 0 189 275 16 102 6.26e-18 82.0
Msa0306860 MtrunA17_Chr4g0039971 46.250 80 42 1 192 270 15 94 7.02e-18 82.8
Msa0306860 MtrunA17_Chr2g0323351 44.706 85 46 1 192 275 14 98 7.63e-18 80.9
Msa0306860 MtrunA17_Chr6g0454921 41.860 86 50 0 186 271 9 94 1.52e-17 79.3
Msa0306860 MtrunA17_Chr2g0309911 42.353 85 48 1 192 275 13 97 1.57e-17 81.3
Msa0306860 MtrunA17_Chr3g0099131 43.182 88 49 1 189 275 40 127 1.80e-17 82.4
Msa0306860 MtrunA17_Chr3g0125801 51.250 80 39 0 192 271 16 95 3.43e-17 80.1
Msa0306860 MtrunA17_Chr3g0115821 42.353 85 48 1 192 275 14 98 1.15e-16 79.0
Msa0306860 MtrunA17_Chr8g0354661 45.882 85 45 1 192 275 39 123 1.18e-16 80.1
Msa0306860 MtrunA17_Chr5g0410961 40.860 93 48 2 192 283 14 100 1.46e-16 79.0
Msa0306860 MtrunA17_Chr4g0055981 43.011 93 46 2 192 283 57 143 1.82e-16 77.0
Msa0306860 MtrunA17_Chr3g0080861 33.571 140 68 3 141 275 4 123 2.11e-16 79.0
Msa0306860 MtrunA17_Chr7g0261281 41.053 95 45 3 192 283 14 100 2.24e-16 77.4
Msa0306860 MtrunA17_Chr8g0349261 45.455 88 42 2 192 275 15 100 2.51e-16 77.4
Msa0306860 MtrunA17_Chr7g0254261 39.024 123 64 2 158 271 48 168 3.16e-16 77.8
Msa0306860 MtrunA17_Chr2g0281071 41.935 93 47 2 192 283 15 101 3.18e-16 77.8
Msa0306860 MtrunA17_Chr5g0395281 39.785 93 49 2 192 283 14 100 4.82e-16 77.0
Msa0306860 MtrunA17_Chr7g0274581 38.947 95 47 3 192 283 14 100 5.31e-16 75.1
Msa0306860 MtrunA17_Chr4g0042671 39.785 93 49 2 192 283 14 100 6.04e-16 77.4
Msa0306860 MtrunA17_Chr8g0362231 40.566 106 61 2 170 275 2 105 6.27e-16 77.4
Msa0306860 MtrunA17_Chr4g0013361 46.512 86 44 2 192 275 12 97 6.61e-16 76.3
Msa0306860 MtrunA17_Chr7g0271241 40.426 94 47 3 192 283 14 100 7.22e-16 77.0
Msa0306860 MtrunA17_Chr7g0240821 42.391 92 44 3 195 284 6 90 7.23e-16 75.1
Msa0306860 MtrunA17_Chr2g0323411 40.860 93 48 2 192 283 14 100 7.91e-16 76.6
Msa0306860 MtrunA17_Chr8g0342541 39.535 86 49 2 192 275 14 98 8.18e-16 76.6
Msa0306860 MtrunA17_Chr4g0048511 40.860 93 48 2 192 283 15 101 1.19e-15 76.3
Msa0306860 MtrunA17_Chr2g0330041 40.698 86 48 2 192 275 14 98 1.36e-15 76.3
Msa0306860 MtrunA17_Chr1g0193371 39.535 86 49 2 192 275 14 98 3.10e-15 75.1
Msa0306860 MtrunA17_Chr3g0117091 39.362 94 48 3 192 283 14 100 3.66e-15 74.7
Msa0306860 MtrunA17_Chr7g0228231 41.304 92 51 2 186 275 10 100 4.42e-15 72.4
Msa0306860 MtrunA17_Chr7g0270891 38.710 93 50 2 192 283 14 100 4.52e-15 74.7
Msa0306860 MtrunA17_Chr8g0385321 38.947 95 53 2 182 275 8 98 4.96e-15 73.9
Msa0306860 MtrunA17_Chr1g0193801 37.634 93 51 2 192 283 14 100 5.45e-15 74.7
Msa0306860 MtrunA17_Chr8g0342521 39.535 86 49 2 192 275 14 98 5.64e-15 74.3
Msa0306860 MtrunA17_Chr7g0228991 39.362 94 50 2 192 284 31 118 6.55e-15 73.2
Msa0306860 MtrunA17_Chr5g0416341 39.423 104 62 1 172 275 7 109 6.65e-15 74.7
Msa0306860 MtrunA17_Chr1g0211161 39.535 86 49 2 192 275 15 99 8.71e-15 72.0
Msa0306860 MtrunA17_Chr7g0217741 39.785 93 49 2 192 283 14 100 1.06e-14 73.2
Msa0306860 MtrunA17_Chr1g0203411 40.860 93 48 2 192 283 14 100 1.06e-14 72.8
Msa0306860 MtrunA17_Chr5g0397231 40.000 85 50 1 192 275 14 98 1.09e-14 73.2
Msa0306860 MtrunA17_Chr8g0334881 46.512 86 44 2 192 275 12 97 1.38e-14 72.8
Msa0306860 MtrunA17_Chr4g0022881 38.824 85 51 1 192 275 14 98 1.39e-14 71.6
Msa0306860 MtrunA17_Chr1g0192411 37.615 109 56 3 192 288 14 122 1.45e-14 73.6
Msa0306860 MtrunA17_Chr6g0453471 41.250 80 46 1 192 270 14 93 1.50e-14 73.2
Msa0306860 MtrunA17_Chr4g0058631 37.634 93 51 2 192 283 14 100 1.62e-14 72.8
Msa0306860 MtrunA17_Chr2g0311221 43.023 86 47 2 187 270 10 95 1.91e-14 72.4
Msa0306860 MtrunA17_Chr3g0088461 39.815 108 52 3 183 283 9 110 1.98e-14 72.4
Msa0306860 MtrunA17_Chr1g0187761 39.362 94 48 3 192 283 14 100 1.98e-14 71.6
Msa0306860 MtrunA17_Chr6g0450101 38.462 91 55 1 186 275 10 100 2.15e-14 70.5
Msa0306860 MtrunA17_Chr4g0070641 39.785 93 49 2 192 283 14 100 2.24e-14 69.7
Msa0306860 MtrunA17_Chr4g0044421 40.000 95 46 3 192 283 14 100 2.28e-14 70.1
Msa0306860 MtrunA17_Chr4g0037141 40.860 93 48 2 192 283 14 100 2.35e-14 71.6
Msa0306860 MtrunA17_Chr4g0070611 39.785 93 49 2 192 283 14 100 2.57e-14 72.0
Msa0306860 MtrunA17_Chr6g0483051 35.948 153 85 4 122 272 58 199 2.78e-14 72.8
Msa0306860 MtrunA17_Chr6g0483051 35.417 96 61 1 187 282 64 158 1.22e-12 68.2
Msa0306860 MtrunA17_Chr5g0417821 40.000 80 47 1 192 270 9 88 2.85e-14 71.6
Msa0306860 MtrunA17_Chr8g0387421 39.583 96 54 2 184 275 3 98 3.11e-14 71.6
Msa0306860 MtrunA17_Chr5g0434931 38.298 94 51 2 192 284 37 124 3.32e-14 71.2
Msa0306860 MtrunA17_Chr8g0342481 39.080 87 49 3 192 275 14 99 3.33e-14 72.4
Msa0306860 MtrunA17_Chr1g0186061 41.860 86 47 2 192 275 22 106 3.51e-14 70.9
Msa0306860 MtrunA17_Chr3g0103281 38.542 96 52 2 189 283 11 100 3.51e-14 71.6
Msa0306860 MtrunA17_Chr1g0167691 38.710 93 50 2 192 283 14 100 3.85e-14 70.9
Msa0306860 MtrunA17_Chr8g0346561 41.053 95 45 3 192 283 14 100 4.60e-14 71.2
Msa0306860 MtrunA17_Chr2g0323321 37.500 80 49 1 192 270 13 92 5.14e-14 67.0
Msa0306860 MtrunA17_Chr3g0131121 39.785 93 49 2 192 283 14 100 5.17e-14 70.9
Msa0306860 MtrunA17_Chr1g0168661 41.860 86 47 2 192 275 23 107 5.30e-14 70.5
Msa0306860 MtrunA17_Chr8g0343831 38.614 101 52 4 186 283 3 96 5.79e-14 70.1
Msa0306860 MtrunA17_Chr6g0452271 38.542 96 52 2 189 283 11 100 5.97e-14 71.2
Msa0306860 MtrunA17_Chr4g0042611 41.333 75 43 1 192 265 14 88 6.54e-14 66.2
Msa0306860 MtrunA17_Chr7g0217221 41.250 80 46 1 192 270 14 93 7.41e-14 70.1
Msa0306860 MtrunA17_Chr1g0180391 39.785 93 49 2 192 283 21 107 7.58e-14 69.7
Msa0306860 MtrunA17_Chr4g0032401 37.634 93 51 2 192 283 19 105 1.14e-13 70.1
Msa0306860 MtrunA17_Chr4g0030881 41.304 92 46 2 192 275 9 100 1.17e-13 69.3
Msa0306860 MtrunA17_Chr4g0057031 41.489 94 46 3 192 283 14 100 1.20e-13 69.7
Msa0306860 MtrunA17_Chr2g0327821 42.353 85 48 1 192 275 8 92 1.60e-13 68.6
Msa0306860 MtrunA17_Chr2g0328771 37.634 93 51 2 192 283 22 108 1.61e-13 69.7
Msa0306860 MtrunA17_Chr5g0434571 41.860 86 47 2 192 275 50 134 1.75e-13 70.1
Msa0306860 MtrunA17_Chr1g0167661 37.634 93 51 2 192 283 14 100 2.33e-13 68.6
Msa0306860 MtrunA17_Chr7g0275911 40.000 95 46 3 192 283 14 100 2.50e-13 68.6
Msa0306860 MtrunA17_Chr4g0022891 40.698 86 48 2 192 275 14 98 2.54e-13 68.2
Msa0306860 MtrunA17_Chr8g0342471 41.772 79 42 3 192 267 14 91 2.72e-13 65.9
Msa0306860 MtrunA17_Chr5g0425591 38.554 83 49 2 192 272 11 93 3.24e-13 64.3
Msa0306860 MtrunA17_Chr5g0435101 38.710 93 50 2 192 283 13 99 3.76e-13 67.4
Msa0306860 MtrunA17_Chr8g0342531 37.975 79 46 2 192 268 14 91 3.77e-13 66.2
Msa0306860 MtrunA17_Chr7g0220341 37.755 98 52 2 192 286 27 118 4.61e-13 67.8
Msa0306860 MtrunA17_Chr1g0209661 37.634 93 54 3 186 275 22 113 6.06e-13 68.2
Msa0306860 MtrunA17_Chr3g0110351 40.698 86 48 2 192 275 14 98 6.31e-13 67.8
Msa0306860 MtrunA17_Chr7g0228891 41.975 81 44 2 192 270 14 93 6.51e-13 67.4
Msa0306860 MtrunA17_Chr8g0342461 40.506 79 43 3 192 267 14 91 7.88e-13 64.7
Msa0306860 MtrunA17_Chr4g0060721 38.750 80 48 1 192 270 15 94 8.11e-13 67.8
Msa0306860 MtrunA17_Chr8g0342511 40.000 75 42 2 192 264 14 87 8.63e-13 63.5
Msa0306860 MtrunA17_Chr6g0453211 39.024 82 45 2 192 270 14 93 9.23e-13 67.4
Msa0306860 MtrunA17_Chr8g0360111 37.234 94 52 2 192 284 27 114 1.04e-12 66.6
Msa0306860 MtrunA17_Chr2g0322521 46.316 95 40 3 192 283 31 117 1.13e-12 67.8
Msa0306860 MtrunA17_Chr5g0441141 37.209 86 52 2 192 275 14 99 1.16e-12 66.6
Msa0306860 MtrunA17_Chr5g0440761 37.209 86 52 2 192 275 14 99 1.18e-12 66.6
Msa0306860 MtrunA17_Chr7g0274481 36.667 90 54 1 193 282 8 94 1.26e-12 68.2
Msa0306860 MtrunA17_Chr3g0121241 36.559 93 52 2 192 283 44 130 1.31e-12 67.0
Msa0306860 MtrunA17_Chr5g0440781 37.209 86 52 2 192 275 14 99 1.34e-12 65.1
Msa0306860 MtrunA17_Chr5g0434911 36.170 94 53 2 192 284 23 110 1.61e-12 66.2
Msa0306860 MtrunA17_Chr5g0395221 40.000 75 44 1 192 265 14 88 1.68e-12 62.4
Msa0306860 MtrunA17_Chr5g0441131 36.047 86 53 2 192 275 11 96 1.68e-12 64.7
Msa0306860 MtrunA17_Chr5g0434841 38.298 94 51 2 192 284 22 109 1.73e-12 66.6
Msa0306860 MtrunA17_Chr7g0238651 38.043 92 52 2 194 282 9 98 2.17e-12 66.6
Msa0306860 MtrunA17_Chr5g0397691 37.363 91 52 1 192 282 7 92 2.81e-12 67.0
Msa0306860 MtrunA17_Chr4g0068061 36.585 82 47 2 192 270 14 93 3.34e-12 65.9
Msa0306860 MtrunA17_Chr1g0203441 34.043 94 61 1 183 275 6 99 4.27e-12 65.1
Msa0306860 MtrunA17_Chr7g0247131 47.541 61 30 1 217 275 4 64 5.27e-12 64.7
Msa0306860 MtrunA17_Chr7g0254411 38.750 80 48 1 192 270 14 93 7.79e-12 65.1
Msa0306860 MtrunA17_Chr5g0434831 36.170 94 53 2 192 284 9 96 1.13e-11 62.8
Msa0306860 MtrunA17_Chr3g0092401 37.500 80 49 1 192 270 15 94 1.17e-11 64.3
Msa0306860 MtrunA17_Chr1g0194301 39.024 82 47 2 192 271 35 115 1.79e-11 63.5
Msa0306860 MtrunA17_Chr6g0470971 36.471 85 53 1 192 275 16 100 2.01e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0306860 AT3G27785.1 50.355 141 61 3 149 286 143 277 5.13e-37 137
Msa0306860 AT4G18770.1 62.500 96 30 1 191 286 216 305 7.81e-37 136
Msa0306860 AT5G11050.1 62.500 96 34 1 182 275 93 188 1.68e-34 129
Msa0306860 AT5G58850.1 43.421 152 79 1 120 271 40 184 1.06e-32 125
Msa0306860 AT5G40360.1 60.870 92 35 1 185 275 150 241 1.39e-32 123
Msa0306860 AT5G11510.3 57.647 85 36 0 187 271 76 160 1.36e-30 121
Msa0306860 AT5G11510.1 57.647 85 36 0 187 271 76 160 1.36e-30 121
Msa0306860 AT5G11510.4 57.647 85 36 0 187 271 76 160 1.36e-30 121
Msa0306860 AT5G11510.2 57.647 85 36 0 187 271 76 160 1.81e-30 121
Msa0306860 AT5G11510.5 57.647 85 36 0 187 271 76 160 1.92e-30 120
Msa0306860 AT5G02320.1 56.180 89 39 0 187 275 122 210 2.18e-28 114
Msa0306860 AT5G02320.1 35.955 89 56 1 190 277 73 161 1.67e-12 67.8
Msa0306860 AT5G02320.2 56.180 89 39 0 187 275 122 210 2.18e-28 114
Msa0306860 AT5G02320.2 35.955 89 56 1 190 277 73 161 1.67e-12 67.8
Msa0306860 AT3G09370.1 57.303 89 38 0 187 275 125 213 2.24e-28 114
Msa0306860 AT3G09370.1 37.079 89 55 1 190 277 76 164 9.10e-12 65.5
Msa0306860 AT3G09370.2 57.303 89 38 0 187 275 130 218 2.39e-28 114
Msa0306860 AT3G09370.2 37.079 89 55 1 190 277 81 169 8.98e-12 65.9
Msa0306860 AT5G02320.3 56.180 89 39 0 187 275 62 150 3.11e-28 113
Msa0306860 AT5G02320.3 35.955 89 56 1 190 277 13 101 2.77e-12 67.0
Msa0306860 AT3G09370.3 57.303 89 38 0 187 275 138 226 3.15e-28 114
Msa0306860 AT3G09370.3 37.079 89 55 1 190 277 89 177 1.07e-11 65.5
Msa0306860 AT4G32730.5 54.118 85 39 0 187 271 82 166 1.99e-27 112
Msa0306860 AT4G32730.4 54.118 85 39 0 187 271 82 166 1.99e-27 112
Msa0306860 AT4G32730.3 54.118 85 39 0 187 271 82 166 1.99e-27 112
Msa0306860 AT4G32730.2 54.118 85 39 0 187 271 82 166 1.99e-27 112
Msa0306860 AT4G32730.1 54.118 85 39 0 187 271 82 166 2.48e-27 112
Msa0306860 AT5G40430.1 40.909 132 71 3 148 275 8 136 2.15e-24 99.4
Msa0306860 AT2G25230.1 51.190 84 41 0 192 275 26 109 2.92e-23 95.9
Msa0306860 AT4G33450.1 47.872 94 49 0 178 271 5 98 6.39e-23 95.1
Msa0306860 AT4G00540.2 45.946 111 48 3 169 271 79 185 6.29e-21 92.0
Msa0306860 AT3G09230.1 49.398 83 42 0 189 271 52 134 8.63e-21 91.7
Msa0306860 AT4G00540.1 45.946 111 48 3 169 271 77 183 1.22e-20 91.7
Msa0306860 AT3G55730.1 44.828 87 48 0 189 275 53 139 5.70e-20 89.4
Msa0306860 AT1G17950.1 48.750 80 41 0 192 271 5 84 2.47e-19 85.5
Msa0306860 AT2G26960.1 45.882 85 45 1 192 275 22 106 4.39e-19 87.0
Msa0306860 AT5G17800.1 51.250 80 39 0 192 271 93 172 4.47e-19 85.9
Msa0306860 AT3G29020.1 45.238 84 46 0 192 275 65 148 4.49e-19 84.3
Msa0306860 AT3G29020.2 45.238 84 46 0 192 275 67 150 4.85e-19 85.5
Msa0306860 AT1G69560.2 47.500 80 42 0 192 271 123 202 5.47e-19 86.3
Msa0306860 AT1G69560.1 47.500 80 42 0 192 271 107 186 5.89e-19 85.9
Msa0306860 AT5G14750.1 46.809 94 41 3 192 283 18 104 1.28e-18 82.4
Msa0306860 AT3G11440.2 43.529 85 47 1 192 275 43 127 1.41e-18 85.9
Msa0306860 AT1G26780.1 46.429 84 45 0 192 275 98 181 1.53e-18 84.0
Msa0306860 AT1G26780.2 46.429 84 45 0 192 275 98 181 2.07e-18 84.7
Msa0306860 AT3G11440.3 43.529 85 47 1 192 275 43 127 2.39e-18 85.5
Msa0306860 AT3G11440.4 43.529 85 47 1 192 275 43 127 2.39e-18 85.5
Msa0306860 AT3G11440.1 43.529 85 47 1 192 275 43 127 2.39e-18 85.5
Msa0306860 AT4G37260.1 43.333 90 51 0 186 275 7 96 9.35e-18 82.4
Msa0306860 AT5G40330.1 44.681 94 43 3 192 283 14 100 1.58e-17 79.7
Msa0306860 AT3G27920.1 44.681 94 43 3 192 283 16 102 2.39e-17 79.7
Msa0306860 AT2G26950.1 40.449 89 44 2 192 275 18 102 2.63e-17 81.6
Msa0306860 AT2G23290.1 43.333 90 51 0 186 275 7 96 3.66e-17 80.5
Msa0306860 AT5G55020.1 43.529 85 47 1 192 275 28 112 3.85e-17 81.6
Msa0306860 AT4G26930.1 43.529 85 47 1 192 275 21 105 5.02e-17 80.9
Msa0306860 AT5G06100.1 41.176 85 49 1 192 275 34 118 6.94e-17 80.9
Msa0306860 AT2G32460.1 44.828 87 43 2 192 275 20 104 8.69e-17 80.5
Msa0306860 AT2G32460.2 44.828 87 43 2 192 275 8 92 9.31e-17 80.5
Msa0306860 AT5G06100.5 41.176 85 49 1 192 275 34 118 1.00e-16 80.5
Msa0306860 AT5G06100.2 41.176 85 49 1 192 275 34 118 1.00e-16 80.5
Msa0306860 AT5G06100.3 41.176 85 49 1 192 275 34 118 1.00e-16 80.5
Msa0306860 AT5G06100.4 41.176 85 49 1 192 275 34 118 1.00e-16 80.5
Msa0306860 AT1G74430.1 41.935 93 47 2 192 283 14 100 1.04e-16 78.6
Msa0306860 AT1G34670.1 41.176 85 49 1 192 275 14 98 1.36e-16 79.3
Msa0306860 AT3G12720.1 43.023 86 46 2 192 275 24 108 1.65e-16 78.6
Msa0306860 AT5G67300.1 40.230 87 52 0 189 275 3 89 1.94e-16 78.2
Msa0306860 AT3G61250.1 45.349 86 44 2 192 275 14 98 2.54e-16 77.8
Msa0306860 AT4G21440.1 43.011 93 46 2 192 283 14 100 2.56e-16 78.6
Msa0306860 AT3G28470.1 40.909 88 51 1 189 275 11 98 2.59e-16 78.2
Msa0306860 AT3G50060.1 37.931 87 54 0 189 275 3 89 3.45e-16 77.8
Msa0306860 AT2G39880.1 39.759 83 50 0 189 271 47 129 5.15e-16 77.8
Msa0306860 AT5G16770.4 42.353 85 48 1 192 275 14 98 7.57e-16 77.0
Msa0306860 AT5G16770.3 42.353 85 48 1 192 275 14 98 7.57e-16 77.0
Msa0306860 AT5G16770.1 42.353 85 48 1 192 275 14 98 8.21e-16 77.0
Msa0306860 AT5G16770.2 42.353 85 48 1 192 275 14 98 8.21e-16 77.0
Msa0306860 AT3G13890.2 38.824 85 51 1 192 275 14 98 8.56e-16 77.0
Msa0306860 AT4G05100.1 41.935 93 47 2 192 283 15 101 8.76e-16 76.6
Msa0306860 AT3G13890.1 36.170 94 50 1 192 275 14 107 8.79e-16 77.0
Msa0306860 AT5G39700.1 44.304 79 44 0 193 271 57 135 1.03e-15 74.3
Msa0306860 AT1G73410.1 47.619 84 44 0 192 275 6 89 1.23e-15 75.1
Msa0306860 AT1G73410.2 47.619 84 44 0 192 275 6 89 1.48e-15 73.9
Msa0306860 AT5G10280.1 40.000 85 50 1 192 275 14 98 1.55e-15 76.3
Msa0306860 AT4G28110.1 40.860 93 48 2 192 283 14 100 1.77e-15 75.5
Msa0306860 AT2G47190.1 37.864 103 61 2 175 275 5 106 2.04e-15 75.1
Msa0306860 AT5G54230.1 42.553 94 45 3 192 283 14 100 2.06e-15 75.5
Msa0306860 AT1G57560.2 39.362 94 48 3 192 283 14 100 4.18e-15 74.3
Msa0306860 AT1G57560.1 39.362 94 48 3 192 283 14 100 4.19e-15 74.7
Msa0306860 AT1G22640.1 42.553 94 45 3 192 283 14 100 4.26e-15 73.9
Msa0306860 AT5G65230.1 38.824 85 51 1 192 275 14 98 4.76e-15 74.3
Msa0306860 AT5G59780.3 42.353 85 48 1 192 275 10 94 4.87e-15 73.2
Msa0306860 AT3G46130.1 43.529 85 47 1 192 275 11 95 5.31e-15 73.6
Msa0306860 AT3G23250.1 40.000 95 46 3 192 283 14 100 6.78e-15 73.6
Msa0306860 AT4G01680.1 37.634 93 51 2 192 283 14 100 8.46e-15 73.9
Msa0306860 AT5G26660.1 40.426 94 47 3 192 283 14 100 1.08e-14 73.9
Msa0306860 AT1G09540.1 40.426 94 47 3 192 283 14 100 1.11e-14 73.9
Msa0306860 AT3G02940.2 41.176 85 49 1 192 275 14 98 1.13e-14 73.6
Msa0306860 AT4G38620.1 41.935 93 47 2 192 283 14 100 1.26e-14 72.8
Msa0306860 AT4G01680.3 37.634 93 51 2 192 283 14 100 1.31e-14 72.4
Msa0306860 AT3G30210.1 43.210 81 45 1 192 271 29 109 1.35e-14 72.8
Msa0306860 AT1G06180.1 40.426 94 47 3 192 283 14 100 1.47e-14 72.0
Msa0306860 AT3G02940.1 41.176 85 49 1 192 275 14 98 1.55e-14 73.2
Msa0306860 AT3G02940.3 41.176 85 49 1 192 275 14 98 1.55e-14 73.2
Msa0306860 AT4G01680.2 34.286 105 50 2 192 283 14 112 2.87e-14 72.4
Msa0306860 AT1G18570.1 41.176 85 49 1 192 275 15 99 3.69e-14 72.4
Msa0306860 AT5G12870.1 40.860 93 48 2 192 283 20 106 4.03e-14 71.6
Msa0306860 AT5G62470.1 39.241 79 48 0 192 270 14 92 4.22e-14 72.0
Msa0306860 AT3G13540.1 37.895 95 48 3 192 283 25 111 4.47e-14 70.9
Msa0306860 AT3G60460.1 45.679 81 42 2 192 270 13 93 5.88e-14 71.2
Msa0306860 AT3G48920.1 41.414 99 56 2 178 275 7 104 5.95e-14 70.9
Msa0306860 AT3G24310.1 41.860 86 47 2 192 275 20 104 6.66e-14 70.9
Msa0306860 AT3G01530.1 36.449 107 64 3 172 275 6 111 7.68e-14 69.3
Msa0306860 AT1G56160.1 39.080 87 49 3 187 270 10 95 8.02e-14 70.9
Msa0306860 AT5G56110.1 39.583 96 51 2 189 283 11 100 9.47e-14 70.9
Msa0306860 AT3G18100.1 39.175 97 57 2 187 282 490 585 9.96e-14 72.0
Msa0306860 AT3G18100.1 35.455 110 71 0 161 270 515 624 2.85e-13 70.5
Msa0306860 AT4G13480.1 41.860 86 47 2 192 275 8 92 1.03e-13 70.1
Msa0306860 AT5G52600.1 41.489 94 46 3 192 283 14 100 1.05e-13 68.9
Msa0306860 AT3G01140.2 40.000 80 47 1 192 270 14 93 1.08e-13 70.9
Msa0306860 AT4G12350.1 39.362 94 48 3 192 283 14 100 1.12e-13 70.1
Msa0306860 AT3G01140.1 40.000 80 47 1 192 270 57 136 1.17e-13 70.9
Msa0306860 AT3G18100.3 39.175 97 57 2 187 282 442 537 1.22e-13 71.6
Msa0306860 AT3G18100.3 35.455 110 71 0 161 270 467 576 3.56e-13 70.1
Msa0306860 AT1G74080.1 39.785 93 49 2 192 283 14 100 1.23e-13 70.5
Msa0306860 AT3G08500.1 39.175 97 52 2 188 283 28 118 1.36e-13 70.5
Msa0306860 AT4G09460.1 40.000 95 46 3 192 283 14 100 1.41e-13 69.3
Msa0306860 AT5G35550.1 40.426 94 47 3 192 283 16 102 1.52e-13 69.3
Msa0306860 AT3G18100.4 39.175 97 57 2 187 282 329 424 1.54e-13 71.2
Msa0306860 AT3G18100.4 35.455 110 71 0 161 270 354 463 3.95e-13 70.1
Msa0306860 AT3G18100.2 39.175 97 57 2 187 282 277 372 1.90e-13 70.9
Msa0306860 AT3G18100.2 35.455 110 71 0 161 270 302 411 4.27e-13 69.7
Msa0306860 AT2G16720.1 41.053 95 45 3 192 283 14 100 1.90e-13 69.3
Msa0306860 AT1G14350.2 37.037 81 51 0 195 275 28 108 2.13e-13 70.5
Msa0306860 AT1G14350.1 37.037 81 51 0 195 275 28 108 2.13e-13 70.5
Msa0306860 AT2G31180.1 37.634 93 51 2 192 283 14 100 2.24e-13 68.9
Msa0306860 AT5G14340.1 41.975 81 44 2 192 270 26 105 2.36e-13 69.3
Msa0306860 AT1G18710.1 36.905 84 52 1 192 274 14 97 2.60e-13 68.9
Msa0306860 AT5G40350.1 40.698 86 48 2 192 275 19 103 2.70e-13 68.2
Msa0306860 AT1G63910.1 38.824 85 51 1 192 275 14 98 2.83e-13 69.7
Msa0306860 AT5G15310.1 37.634 93 51 2 192 283 14 100 3.09e-13 69.3
Msa0306860 AT5G15310.4 38.750 80 48 1 192 270 14 93 3.09e-13 68.6
Msa0306860 AT1G66370.1 38.298 94 51 2 192 284 10 97 3.31e-13 68.2
Msa0306860 AT5G15310.2 37.634 93 51 2 192 283 14 100 3.50e-13 68.9
Msa0306860 AT1G35515.1 37.634 93 51 2 192 283 14 100 3.58e-13 67.8
Msa0306860 AT3G27810.1 40.698 86 48 2 192 275 22 106 4.78e-13 67.4
Msa0306860 AT4G17785.1 35.294 85 54 1 192 275 15 99 5.03e-13 68.9
Msa0306860 AT4G17785.2 35.294 85 54 1 192 275 15 99 5.45e-13 68.9
Msa0306860 AT1G79180.1 38.947 95 47 3 192 283 16 102 5.57e-13 68.2
Msa0306860 AT1G66230.1 40.698 86 48 2 192 275 14 98 5.95e-13 68.2
Msa0306860 AT5G61420.2 40.741 81 47 1 192 271 14 94 6.11e-13 68.9
Msa0306860 AT5G07700.1 40.741 81 47 1 192 271 14 94 7.49e-13 68.2
Msa0306860 AT5G07700.2 40.741 81 47 1 192 271 14 94 7.49e-13 68.2
Msa0306860 AT5G07690.1 40.741 81 47 1 192 271 14 94 7.84e-13 68.2
Msa0306860 AT3G47600.1 38.750 80 48 1 192 270 14 93 9.39e-13 68.2
Msa0306860 AT4G22680.1 40.426 94 47 3 192 283 14 100 9.68e-13 67.4
Msa0306860 AT1G74650.1 41.250 80 46 1 192 270 14 93 9.95e-13 67.8
Msa0306860 AT5G62470.2 38.750 80 48 1 192 270 14 93 1.37e-12 67.8
Msa0306860 AT4G34990.1 38.710 93 50 2 192 283 14 100 1.62e-12 66.6
Msa0306860 AT3G53200.1 36.000 100 55 3 186 283 5 97 1.84e-12 66.2
Msa0306860 AT5G60890.1 38.824 85 51 1 192 275 14 98 2.46e-12 66.6
Msa0306860 AT1G09770.1 37.179 78 49 0 193 270 8 85 2.47e-12 67.8
Msa0306860 AT2G02820.2 35.802 81 52 0 195 275 33 113 2.68e-12 67.4
Msa0306860 AT1G16490.1 36.842 95 49 3 192 283 16 102 3.32e-12 65.9
Msa0306860 AT2G02820.1 35.802 81 52 0 195 275 33 113 3.99e-12 66.6
Msa0306860 AT1G25340.1 40.404 99 53 3 175 271 6 100 4.03e-12 65.9
Msa0306860 AT4G25560.1 38.824 85 51 1 192 275 12 96 4.19e-12 65.9
Msa0306860 AT3G28910.1 39.024 82 45 2 192 270 14 93 6.58e-12 65.5
Msa0306860 AT5G26660.2 39.024 82 33 2 202 283 5 69 7.29e-12 65.5
Msa0306860 AT2G37630.1 39.130 92 51 2 194 282 6 95 7.75e-12 65.5
Msa0306860 AT5G14750.3 47.458 59 25 1 225 283 18 70 1.00e-11 62.8
Msa0306860 AT3G12820.1 39.130 92 52 3 187 275 10 100 1.05e-11 63.9
Msa0306860 AT2G02820.3 35.802 81 52 0 195 275 33 113 1.23e-11 64.7
Msa0306860 AT1G25340.2 38.144 97 53 2 175 271 6 95 1.44e-11 63.9
Msa0306860 AT3G62610.1 39.535 86 49 2 192 275 14 98 2.64e-11 63.9
Msa0306860 AT1G25340.3 40.244 82 45 1 190 271 18 95 2.81e-11 63.5
Msa0306860 AT1G08810.1 39.024 82 45 2 192 270 14 93 2.98e-11 63.2
Msa0306860 AT5G16600.1 39.362 94 48 3 192 283 14 100 3.31e-11 63.5
Msa0306860 AT2G47460.1 38.272 81 47 2 192 270 14 93 5.76e-11 62.8
Msa0306860 AT1G68320.1 37.805 82 48 2 192 271 21 101 6.39e-11 62.4

Find 85 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACACTAGCAAAGGAATT+TGG 0.154850 2_3:-65998973 Msa0306860:CDS
GTCCAATTGGTGGATCAATT+TGG 0.216324 2_3:-65998505 Msa0306860:CDS
GAATCCTCTTCCGCCGCTTT+TGG 0.241567 2_3:+65998756 None:intergenic
GTATGTCTTCCATCTTATTA+TGG 0.265624 2_3:+65999005 None:intergenic
AAGATCTTCTTTAAGTTGAT+TGG 0.271099 2_3:+65999186 None:intergenic
TCCAATTGGTGGATCAATTT+GGG 0.272796 2_3:-65998504 Msa0306860:CDS
CTTTCATGCAATGATGGAAT+TGG 0.295338 2_3:-65998821 Msa0306860:CDS
CCATCTTCGACCAAACATTA+AGG 0.321091 2_3:-65998407 Msa0306860:intron
ATCAATTTGGGCTTAGAAAA+TGG 0.323686 2_3:-65998492 Msa0306860:CDS
CATTGTCCCTTGATTTGATT+GGG 0.325873 2_3:+65998704 None:intergenic
GGCGTTCCAGTGGTTCTTGA+TGG 0.329167 2_3:+65996261 None:intergenic
CCATTGTCCCTTGATTTGAT+TGG 0.338992 2_3:+65998703 None:intergenic
TAACACTAGCAAAGGAATTT+GGG 0.340281 2_3:-65998972 Msa0306860:CDS
GGCATTTAGGCGGCGCTTAG+TGG 0.342982 2_3:+65996240 None:intergenic
TCTTCCATCTTATTATGGTT+TGG 0.349975 2_3:+65999010 None:intergenic
AAGAATGACACCTTAATGTT+TGG 0.374739 2_3:+65998397 None:intergenic
TTGTAGGGTTCTTGTCCAAT+TGG 0.386156 2_3:-65998518 Msa0306860:intron
GAAAACAATGCAGAGATAGA+TGG 0.411884 2_3:-65998435 Msa0306860:CDS
AAATTCCTTTGCTAGTGTTA+AGG 0.414690 2_3:+65998975 None:intergenic
TGAAATTTCAAAAGATTGCC+AGG 0.420134 2_3:-65996298 Msa0306860:CDS
AAGTTTCTGAAAGGCAGAAT+TGG 0.420799 2_3:-65998457 Msa0306860:CDS
ATCGAAGCTCACAAAATAGT+TGG 0.441695 2_3:-65996333 Msa0306860:CDS
TAGGGTTCTTGTCCAATTGG+TGG 0.446482 2_3:-65998515 Msa0306860:CDS
GAAAGATCTCCTTGAAGCTC+AGG 0.449302 2_3:+65998839 None:intergenic
CCTTAATGTTTGGTCGAAGA+TGG 0.450935 2_3:+65998407 None:intergenic
TAAGTTGATTGGACTGACTT+TGG 0.453366 2_3:+65999197 None:intergenic
GCCCAAATTGATCCACCAAT+TGG 0.455221 2_3:+65998503 None:intergenic
TCAGTTAATCCTGAGCTTCA+AGG 0.459950 2_3:-65998848 Msa0306860:CDS
TACCGATGGGTTGGGATCAA+AGG 0.460025 2_3:+65999100 None:intergenic
TAGCCTTGTACCGATGGGTT+GGG 0.464899 2_3:+65999092 None:intergenic
TGGTTTGGTGTAAAGACCAT+TGG 0.479856 2_3:+65999025 None:intergenic
GATCAAAGGGAATGGGCTGA+TGG 0.486143 2_3:+65999114 None:intergenic
ATGATGATTCCTTCTCAACT+AGG 0.489341 2_3:-65999265 Msa0306860:CDS
GTGACCAAAAGCGGCGGAAG+AGG 0.490487 2_3:-65998760 Msa0306860:CDS
TGGTGAAACTTCGCAACCTC+GGG 0.496923 2_3:-65998921 Msa0306860:CDS
CTTTCAGAAACTTAGCAATA+CGG 0.498946 2_3:+65998467 None:intergenic
GGAGATCTTTCATGCAATGA+TGG 0.500133 2_3:-65998827 Msa0306860:CDS
CAAGGATCCCAATCAAATCA+AGG 0.510784 2_3:-65998711 Msa0306860:CDS
ATCAAAGGGAATGGGCTGAT+GGG 0.514527 2_3:+65999115 None:intergenic
ACCGATGGGTTGGGATCAAA+GGG 0.517315 2_3:+65999101 None:intergenic
ACAAGGCTACTCACACCAAT+GGG 0.518281 2_3:-65999078 Msa0306860:CDS
TATGATTTCAGAAGGATTCG+TGG 0.521182 2_3:-65996380 Msa0306860:intron
GATCCCAACCCATCGGTACA+AGG 0.525099 2_3:-65999095 Msa0306860:CDS
ATGGAGTTCTCAGTGCGCCC+TGG 0.535313 2_3:+65996280 None:intergenic
TGTGAGTAGCCTTGTACCGA+TGG 0.538156 2_3:+65999086 None:intergenic
ACAAAATAGTTGGAAACAAG+TGG 0.538861 2_3:-65996323 Msa0306860:CDS
TTTCAGAAACTTAGCAATAC+GGG 0.540409 2_3:+65998468 None:intergenic
AGAACTCCATCAAGAACCAC+TGG 0.541811 2_3:-65996267 Msa0306860:CDS
GGGAATGGGCTGATGGGCAA+AGG 0.545009 2_3:+65999121 None:intergenic
TGGGTTGGGATCAAAGGGAA+TGG 0.546058 2_3:+65999106 None:intergenic
GAATTCTCTCTGAGACCCAT+TGG 0.546774 2_3:+65999063 None:intergenic
TACAAGGCTACTCACACCAA+TGG 0.551027 2_3:-65999079 Msa0306860:CDS
TACACCAAACCATAATAAGA+TGG 0.551181 2_3:-65999014 Msa0306860:CDS
GTAGCCTTGTACCGATGGGT+TGG 0.557641 2_3:+65999091 None:intergenic
ATATTTGAACCTAGTTGAGA+AGG 0.559154 2_3:+65999256 None:intergenic
GGGTTGGGATCAAAGGGAAT+GGG 0.559427 2_3:+65999107 None:intergenic
ATGGTGAAACTTCGCAACCT+CGG 0.562590 2_3:-65998922 Msa0306860:CDS
CGTATTGCTAAGTTTCTGAA+AGG 0.570187 2_3:-65998466 Msa0306860:CDS
GGCGCTTAGTGGCGTTCCAG+TGG 0.578401 2_3:+65996251 None:intergenic
TCCCTTTGATCCCAACCCAT+CGG 0.582216 2_3:-65999102 Msa0306860:CDS
CCAATCAAATCAAGGGACAA+TGG 0.585514 2_3:-65998703 Msa0306860:CDS
AGCTAGTGATGGTGATAGAG+AGG 0.585984 2_3:+65998892 None:intergenic
TAGTTGAGAAGGAATCATCA+TGG 0.595698 2_3:+65999267 None:intergenic
TATGTGGTGTAATGTGATGG+TGG 0.597872 2_3:+65999226 None:intergenic
CATCAGTGCTCAAAATCCAA+TGG 0.604920 2_3:-65999041 Msa0306860:CDS
AGTTGAGAAGGAATCATCAT+GGG 0.606652 2_3:+65999268 None:intergenic
AAATATGTGGTGTAATGTGA+TGG 0.608872 2_3:+65999223 None:intergenic
GGGACAATGGACTTCAAATG+AGG 0.612328 2_3:-65998690 Msa0306860:CDS
GAAATTTCAAAAGATTGCCA+GGG 0.616142 2_3:-65996297 Msa0306860:CDS
GGATTCGTGGACCGAAGAGG+AGG 0.618178 2_3:-65996367 Msa0306860:CDS
GGTCGCCTTAACACTAGCAA+AGG 0.621057 2_3:-65998980 Msa0306860:CDS
GCTAGTGATGGTGATAGAGA+GGG 0.625596 2_3:+65998893 None:intergenic
CTGACTTTGGTACAAATATG+TGG 0.626211 2_3:+65999210 None:intergenic
AAGGATCCCAATCAAATCAA+GGG 0.629321 2_3:-65998710 Msa0306860:CDS
GAAGGATTCGTGGACCGAAG+AGG 0.631996 2_3:-65996370 Msa0306860:CDS
AATAAGATGGAAGACATACA+TGG 0.632344 2_3:-65999001 Msa0306860:CDS
TCGTGCTCAGTGACCAAAAG+CGG 0.634605 2_3:-65998769 Msa0306860:CDS
TAATAATGAAATTCAACACA+AGG 0.640392 2_3:-65998729 Msa0306860:CDS
AATGGACTTCAAATGAGGAT+CGG 0.644601 2_3:-65998685 Msa0306860:intron
TGCTCAGTGACCAAAAGCGG+CGG 0.658516 2_3:-65998766 Msa0306860:CDS
GTGGTGTAATGTGATGGTGG+AGG 0.664794 2_3:+65999229 None:intergenic
GTGAGTAGCCTTGTACCGAT+GGG 0.667463 2_3:+65999087 None:intergenic
TCTTCCTCTTGGCATTTAGG+CGG 0.677072 2_3:+65996230 None:intergenic
TGTGCATCATAAGCTAGTGA+TGG 0.696046 2_3:+65998881 None:intergenic
GATAGAGAGGGACTTACCCG+AGG 0.707182 2_3:+65998905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTGTTTTTATTTTTGT+AGG - chr2_3:65996976-65996995 Msa0306860:intron 10.0%
!!! TAATTGTTTTTATTTTTGTA+GGG - chr2_3:65996977-65996996 Msa0306860:intron 10.0%
!! ATATTAATTAAAAACACTTA+TGG + chr2_3:65997632-65997651 None:intergenic 10.0%
!!! AAGTGTTTTTAATTAATATT+TGG - chr2_3:65997633-65997652 Msa0306860:intron 10.0%
!!! AGTGTTTTTAATTAATATTT+GGG - chr2_3:65997634-65997653 Msa0306860:intron 10.0%
!! AAATTACCAAAATTAAAAAT+AGG + chr2_3:65997985-65998004 None:intergenic 10.0%
!!! TATTTTTATATAATCAATGT+AGG + chr2_3:65998085-65998104 None:intergenic 10.0%
!! ATTCATAAATACTTATTAAA+TGG + chr2_3:65998668-65998687 None:intergenic 10.0%
!! TGTAAAAATCAAATATGTTA+AGG + chr2_3:65997231-65997250 None:intergenic 15.0%
!! AAATAAAACGAAAAAGATTA+TGG - chr2_3:65997271-65997290 Msa0306860:intron 15.0%
!! TAGTTTAATAAACATTTCAT+TGG - chr2_3:65997383-65997402 Msa0306860:intron 15.0%
!!! GTGTTTTTAATTAATATTTG+GGG - chr2_3:65997635-65997654 Msa0306860:intron 15.0%
!!! TGTTTTTAATTAATATTTGG+GGG - chr2_3:65997636-65997655 Msa0306860:intron 15.0%
!! CTCGAAAAAAAATTTAAAAA+TGG + chr2_3:65997817-65997836 None:intergenic 15.0%
!!! TCTTTACCTATTTTTAATTT+TGG - chr2_3:65997976-65997995 Msa0306860:intron 15.0%
!!! AATAACAATTGGTTATATTT+TGG + chr2_3:65998866-65998885 None:intergenic 15.0%
!! GGTTAATTATATTTAATGTA+CGG + chr2_3:65999082-65999101 None:intergenic 15.0%
!! ACAAAAAATCTCTTTCAATA+TGG - chr2_3:65996569-65996588 Msa0306860:intron 20.0%
!! TAATAATGAAATTCAACACA+AGG - chr2_3:65996781-65996800 Msa0306860:intron 20.0%
!! TTTATAAAGAAAAGCAGAAT+TGG - chr2_3:65997348-65997367 Msa0306860:intron 20.0%
!!! AAAAATTAGTTCTTGATGAT+AGG + chr2_3:65997503-65997522 None:intergenic 20.0%
!!! GTTTTTAATTAATATTTGGG+GGG - chr2_3:65997637-65997656 Msa0306860:intron 20.0%
!!! TTTTTTTTTTGAGATAGTCA+CGG - chr2_3:65997690-65997709 Msa0306860:intron 20.0%
!!! TTTTATGAATTAAAGTGCAA+AGG + chr2_3:65997894-65997913 None:intergenic 20.0%
!! TAAAAAAACAAATGAGAGTT+TGG + chr2_3:65998151-65998170 None:intergenic 20.0%
!!! GTTAATTTGTTAGTATTTGA+TGG - chr2_3:65998183-65998202 Msa0306860:intron 20.0%
!! AAAGAGTAAAGTTATAAGAA+TGG + chr2_3:65998230-65998249 None:intergenic 20.0%
!! ATACTAGAGATAAAGTATAT+AGG + chr2_3:65998462-65998481 None:intergenic 20.0%
!!! TGAATTATTTTTAAAGGAAG+TGG + chr2_3:65998541-65998560 None:intergenic 20.0%
!!! TCCTTTAAAAATAATTCATG+TGG - chr2_3:65998543-65998562 Msa0306860:intron 20.0%
!!! TCCACATGAATTATTTTTAA+AGG + chr2_3:65998547-65998566 None:intergenic 20.0%
!! TCAAATAGTTTATCATACAT+TGG - chr2_3:65998769-65998788 Msa0306860:CDS 20.0%
!! TTAAACTTTACTAAATTCGT+AGG - chr2_3:65998818-65998837 Msa0306860:CDS 20.0%
!!! TATTTTGTTAGATAGCTAAT+TGG - chr2_3:65999020-65999039 Msa0306860:CDS 20.0%
!!! AAGATCTTCTTTAAGTTGAT+TGG + chr2_3:65996327-65996346 None:intergenic 25.0%
!! TAAAGAAGATCTTTTGAATG+AGG - chr2_3:65996334-65996353 Msa0306860:CDS 25.0%
!! TCATTCTTTTGAATCATTTC+TGG - chr2_3:65997128-65997147 Msa0306860:intron 25.0%
!! CATTCTTTTGAATCATTTCT+GGG - chr2_3:65997129-65997148 Msa0306860:intron 25.0%
! AACACTTATGGATAAAACTT+AGG + chr2_3:65997620-65997639 None:intergenic 25.0%
!! ATTATTTACCCTTGTTTCTT+AGG - chr2_3:65997660-65997679 Msa0306860:intron 25.0%
!! TTATTTACCCTTGTTTCTTA+GGG - chr2_3:65997661-65997680 Msa0306860:intron 25.0%
! AAAAAATCCCTAAGAAACAA+GGG + chr2_3:65997671-65997690 None:intergenic 25.0%
! AAAAAAATCCCTAAGAAACA+AGG + chr2_3:65997672-65997691 None:intergenic 25.0%
!!! TAAATTTTTTTTCGAGCAAG+TGG - chr2_3:65997821-65997840 Msa0306860:intron 25.0%
!! TTGTTTGAAATCTAGTATTG+AGG - chr2_3:65997930-65997949 Msa0306860:intron 25.0%
! AAAACAAAAACACATGTGAA+AGG + chr2_3:65998058-65998077 None:intergenic 25.0%
!!! AATTTGTTAGTATTTGATGG+AGG - chr2_3:65998186-65998205 Msa0306860:intron 25.0%
! CCAATTGTATGAATAACAAT+TGG + chr2_3:65998877-65998896 None:intergenic 25.0%
!! CCAATTGTTATTCATACAAT+TGG - chr2_3:65998874-65998893 Msa0306860:CDS 25.0%
! TTTAACACATATAGGCATAT+TGG + chr2_3:65998907-65998926 None:intergenic 25.0%
! TATGCCTATATGTGTTAAAT+TGG - chr2_3:65998908-65998927 Msa0306860:CDS 25.0%
! AACACCAATTTAACACATAT+AGG + chr2_3:65998915-65998934 None:intergenic 25.0%
!! GAATTTTCCTGTTGTTAAAT+TGG - chr2_3:65998936-65998955 Msa0306860:CDS 25.0%
! TCATACATAACAATATGTGT+GGG + chr2_3:65999115-65999134 None:intergenic 25.0%
! ATCATACATAACAATATGTG+TGG + chr2_3:65999116-65999135 None:intergenic 25.0%
! TTGTTATGTATGATTTCAGA+AGG - chr2_3:65999122-65999141 Msa0306860:CDS 25.0%
ATATTTGAACCTAGTTGAGA+AGG + chr2_3:65996257-65996276 None:intergenic 30.0%
AAATATGTGGTGTAATGTGA+TGG + chr2_3:65996290-65996309 None:intergenic 30.0%
TACACCAAACCATAATAAGA+TGG - chr2_3:65996496-65996515 Msa0306860:intron 30.0%
TCTTCCATCTTATTATGGTT+TGG + chr2_3:65996503-65996522 None:intergenic 30.0%
GTATGTCTTCCATCTTATTA+TGG + chr2_3:65996508-65996527 None:intergenic 30.0%
AATAAGATGGAAGACATACA+TGG - chr2_3:65996509-65996528 Msa0306860:intron 30.0%
AAATTCCTTTGCTAGTGTTA+AGG + chr2_3:65996538-65996557 None:intergenic 30.0%
TTAACACTAGCAAAGGAATT+TGG - chr2_3:65996537-65996556 Msa0306860:intron 30.0%
TAACACTAGCAAAGGAATTT+GGG - chr2_3:65996538-65996557 Msa0306860:intron 30.0%
! GAATTGTTGATCATTTTCTC+GGG + chr2_3:65996723-65996742 None:intergenic 30.0%
! CGAATTGTTGATCATTTTCT+CGG + chr2_3:65996724-65996743 None:intergenic 30.0%
ATCAATTTGGGCTTAGAAAA+TGG - chr2_3:65997018-65997037 Msa0306860:intron 30.0%
TTTCAGAAACTTAGCAATAC+GGG + chr2_3:65997045-65997064 None:intergenic 30.0%
CTTTCAGAAACTTAGCAATA+CGG + chr2_3:65997046-65997065 None:intergenic 30.0%
AAGAATGACACCTTAATGTT+TGG + chr2_3:65997116-65997135 None:intergenic 30.0%
AAAATAGACAACTAGACTAG+TGG + chr2_3:65997438-65997457 None:intergenic 30.0%
CTAAAAAAGCAAGAGATCTA+AGG + chr2_3:65997733-65997752 None:intergenic 30.0%
!!! TCTGTTTTTGTACTTTTTCG+AGG - chr2_3:65997757-65997776 Msa0306860:intron 30.0%
!!! CTGTTTTTGTACTTTTTCGA+GGG - chr2_3:65997758-65997777 Msa0306860:intron 30.0%
GGAAAAATTGTACAAGAAGA+GGG + chr2_3:65997796-65997815 None:intergenic 30.0%
TGGAAAAATTGTACAAGAAG+AGG + chr2_3:65997797-65997816 None:intergenic 30.0%
ATGAATTAAAGTGCAAAGGA+AGG + chr2_3:65997890-65997909 None:intergenic 30.0%
!!! CACGAGTTTTTTTCACTTAA+TGG - chr2_3:65998124-65998143 Msa0306860:intron 30.0%
CTTACAAATGAGAGATACAA+GGG + chr2_3:65998283-65998302 None:intergenic 30.0%
TCTTACAAATGAGAGATACA+AGG + chr2_3:65998284-65998303 None:intergenic 30.0%
TGTAAAATCAAGACACAAGA+CGG + chr2_3:65998424-65998443 None:intergenic 30.0%
AGATATTCAACTTCAAGTGT+TGG + chr2_3:65998707-65998726 None:intergenic 30.0%
TCAAACACCAATTTAACAAC+AGG + chr2_3:65998946-65998965 None:intergenic 30.0%
!! ATATGTGTGGGTTAGATATA+TGG + chr2_3:65999103-65999122 None:intergenic 30.0%
!!! TAATCTTTTTTCCTCCTCTT+CGG + chr2_3:65999157-65999176 None:intergenic 30.0%
ACAAAATAGTTGGAAACAAG+TGG - chr2_3:65999187-65999206 Msa0306860:CDS 30.0%
TGAAATTTCAAAAGATTGCC+AGG - chr2_3:65999212-65999231 Msa0306860:CDS 30.0%
GAAATTTCAAAAGATTGCCA+GGG - chr2_3:65999213-65999232 Msa0306860:CDS 30.0%
ATGATGATTCCTTCTCAACT+AGG - chr2_3:65996245-65996264 Msa0306860:CDS 35.0%
CTGACTTTGGTACAAATATG+TGG + chr2_3:65996303-65996322 None:intergenic 35.0%
!! TAAGTTGATTGGACTGACTT+TGG + chr2_3:65996316-65996335 None:intergenic 35.0%
AGAAAAACTAGAGTGATGGT+TGG + chr2_3:65996360-65996379 None:intergenic 35.0%
TTGCAGAAAAACTAGAGTGA+TGG + chr2_3:65996364-65996383 None:intergenic 35.0%
!!! TCACTCTAGTTTTTCTGCAA+TGG - chr2_3:65996364-65996383 Msa0306860:CDS 35.0%
! CTTTCATGCAATGATGGAAT+TGG - chr2_3:65996689-65996708 Msa0306860:intron 35.0%
AAGGATCCCAATCAAATCAA+GGG - chr2_3:65996800-65996819 Msa0306860:intron 35.0%
! CATTGTCCCTTGATTTGATT+GGG + chr2_3:65996809-65996828 None:intergenic 35.0%
! AATGGACTTCAAATGAGGAT+CGG - chr2_3:65996825-65996844 Msa0306860:intron 35.0%
! TCCAATTGGTGGATCAATTT+GGG - chr2_3:65997006-65997025 Msa0306860:intron 35.0%
CGTATTGCTAAGTTTCTGAA+AGG - chr2_3:65997044-65997063 Msa0306860:intron 35.0%
! AAGTTTCTGAAAGGCAGAAT+TGG - chr2_3:65997053-65997072 Msa0306860:intron 35.0%
GAAAACAATGCAGAGATAGA+TGG - chr2_3:65997075-65997094 Msa0306860:intron 35.0%
!!! TTGTACTTTTTCGAGGGTTT+TGG - chr2_3:65997764-65997783 Msa0306860:intron 35.0%
!!! TTTTTTCGAGCAAGTGGTAT+AGG - chr2_3:65997827-65997846 Msa0306860:intron 35.0%
AGAGATACAAGGGAGTTATA+AGG + chr2_3:65998273-65998292 None:intergenic 35.0%
TATCTCTAGTATGTGACTCT+TGG - chr2_3:65998470-65998489 Msa0306860:CDS 35.0%
TATGATTTCAGAAGGATTCG+TGG - chr2_3:65999130-65999149 Msa0306860:CDS 35.0%
ATCGAAGCTCACAAAATAGT+TGG - chr2_3:65999177-65999196 Msa0306860:CDS 35.0%
TATGTGGTGTAATGTGATGG+TGG + chr2_3:65996287-65996306 None:intergenic 40.0%
CATCAGTGCTCAAAATCCAA+TGG - chr2_3:65996469-65996488 Msa0306860:intron 40.0%
!! TGGTTTGGTGTAAAGACCAT+TGG + chr2_3:65996488-65996507 None:intergenic 40.0%
TGTGCATCATAAGCTAGTGA+TGG + chr2_3:65996632-65996651 None:intergenic 40.0%
TCAGTTAATCCTGAGCTTCA+AGG - chr2_3:65996662-65996681 Msa0306860:intron 40.0%
GGAGATCTTTCATGCAATGA+TGG - chr2_3:65996683-65996702 Msa0306860:intron 40.0%
CAAGGATCCCAATCAAATCA+AGG - chr2_3:65996799-65996818 Msa0306860:intron 40.0%
! CCATTGTCCCTTGATTTGAT+TGG + chr2_3:65996810-65996829 None:intergenic 40.0%
CCAATCAAATCAAGGGACAA+TGG - chr2_3:65996807-65996826 Msa0306860:intron 40.0%
TTGTAGGGTTCTTGTCCAAT+TGG - chr2_3:65996992-65997011 Msa0306860:intron 40.0%
! GTCCAATTGGTGGATCAATT+TGG - chr2_3:65997005-65997024 Msa0306860:intron 40.0%
CCTTAATGTTTGGTCGAAGA+TGG + chr2_3:65997106-65997125 None:intergenic 40.0%
CCATCTTCGACCAAACATTA+AGG - chr2_3:65997103-65997122 Msa0306860:intron 40.0%
!!! CTTTTTCGAGGGTTTTGGTT+TGG - chr2_3:65997769-65997788 Msa0306860:intron 40.0%
!! GAGTTATAAGGTTGACTTGG+TGG + chr2_3:65998261-65998280 None:intergenic 40.0%
AGGGAGTTATAAGGTTGACT+TGG + chr2_3:65998264-65998283 None:intergenic 40.0%
! GTATCGATCATAAGCTTACG+TGG + chr2_3:65998737-65998756 None:intergenic 40.0%
! CATCAATTTTGTTCTCCGCA+CGG - chr2_3:65998970-65998989 Msa0306860:CDS 40.0%
!! ATCAAAGGGAATGGGCTGAT+GGG + chr2_3:65996398-65996417 None:intergenic 45.0%
TACAAGGCTACTCACACCAA+TGG - chr2_3:65996431-65996450 Msa0306860:intron 45.0%
ACAAGGCTACTCACACCAAT+GGG - chr2_3:65996432-65996451 Msa0306860:intron 45.0%
!! GAATTCTCTCTGAGACCCAT+TGG + chr2_3:65996450-65996469 None:intergenic 45.0%
ATGGTGAAACTTCGCAACCT+CGG - chr2_3:65996588-65996607 Msa0306860:intron 45.0%
! GCTAGTGATGGTGATAGAGA+GGG + chr2_3:65996620-65996639 None:intergenic 45.0%
! AGCTAGTGATGGTGATAGAG+AGG + chr2_3:65996621-65996640 None:intergenic 45.0%
GAAAGATCTCCTTGAAGCTC+AGG + chr2_3:65996674-65996693 None:intergenic 45.0%
! GGGACAATGGACTTCAAATG+AGG - chr2_3:65996820-65996839 Msa0306860:intron 45.0%
TAGGGTTCTTGTCCAATTGG+TGG - chr2_3:65996995-65997014 Msa0306860:intron 45.0%
GCCCAAATTGATCCACCAAT+TGG + chr2_3:65997010-65997029 None:intergenic 45.0%
GAGCAAGTGGTATAGGATAG+AGG - chr2_3:65997834-65997853 Msa0306860:intron 45.0%
AAGTGGTATAGGATAGAGGC+TGG - chr2_3:65997838-65997857 Msa0306860:intron 45.0%
GTATAGGATAGAGGCTGGTA+GGG - chr2_3:65997843-65997862 Msa0306860:intron 45.0%
!! AGTGCAAAGGAAGGCATCAA+GGG + chr2_3:65997881-65997900 None:intergenic 45.0%
!! AAGTGCAAAGGAAGGCATCA+AGG + chr2_3:65997882-65997901 None:intergenic 45.0%
ACACGTATTTGTTCCCACAG+TGG + chr2_3:65998998-65999017 None:intergenic 45.0%
AGAACTCCATCAAGAACCAC+TGG - chr2_3:65999243-65999262 Msa0306860:CDS 45.0%
!! ATAAAAAAAAAATATAATCA+AGG + chr2_3:65996920-65996939 None:intergenic 5.0%
!! GTGGTGTAATGTGATGGTGG+AGG + chr2_3:65996284-65996303 None:intergenic 50.0%
!! GATCAAAGGGAATGGGCTGA+TGG + chr2_3:65996399-65996418 None:intergenic 50.0%
GGGTTGGGATCAAAGGGAAT+GGG + chr2_3:65996406-65996425 None:intergenic 50.0%
! TGGGTTGGGATCAAAGGGAA+TGG + chr2_3:65996407-65996426 None:intergenic 50.0%
TCCCTTTGATCCCAACCCAT+CGG - chr2_3:65996408-65996427 Msa0306860:intron 50.0%
!! ACCGATGGGTTGGGATCAAA+GGG + chr2_3:65996412-65996431 None:intergenic 50.0%
!! TACCGATGGGTTGGGATCAA+AGG + chr2_3:65996413-65996432 None:intergenic 50.0%
!! TAGCCTTGTACCGATGGGTT+GGG + chr2_3:65996421-65996440 None:intergenic 50.0%
!! GTGAGTAGCCTTGTACCGAT+GGG + chr2_3:65996426-65996445 None:intergenic 50.0%
!! TGTGAGTAGCCTTGTACCGA+TGG + chr2_3:65996427-65996446 None:intergenic 50.0%
GGTCGCCTTAACACTAGCAA+AGG - chr2_3:65996530-65996549 Msa0306860:intron 50.0%
TGGTGAAACTTCGCAACCTC+GGG - chr2_3:65996589-65996608 Msa0306860:intron 50.0%
TCGTGCTCAGTGACCAAAAG+CGG - chr2_3:65996741-65996760 Msa0306860:intron 50.0%
GGTATAGGATAGAGGCTGGT+AGG - chr2_3:65997842-65997861 Msa0306860:intron 50.0%
!! GTGCAAAGGAAGGCATCAAG+GGG + chr2_3:65997880-65997899 None:intergenic 50.0%
GATCCCAACCCATCGGTACA+AGG - chr2_3:65996415-65996434 Msa0306860:intron 55.0%
!! GTAGCCTTGTACCGATGGGT+TGG + chr2_3:65996422-65996441 None:intergenic 55.0%
GATAGAGAGGGACTTACCCG+AGG + chr2_3:65996608-65996627 None:intergenic 55.0%
TGCTCAGTGACCAAAAGCGG+CGG - chr2_3:65996744-65996763 Msa0306860:intron 55.0%
!! GAATCCTCTTCCGCCGCTTT+TGG + chr2_3:65996757-65996776 None:intergenic 55.0%
!! GAAGGCATCAAGGGGCAACT+AGG + chr2_3:65997872-65997891 None:intergenic 55.0%
GAAGGATTCGTGGACCGAAG+AGG - chr2_3:65999140-65999159 Msa0306860:CDS 55.0%
GGCGTTCCAGTGGTTCTTGA+TGG + chr2_3:65999252-65999271 None:intergenic 55.0%
!! GGGAATGGGCTGATGGGCAA+AGG + chr2_3:65996392-65996411 None:intergenic 60.0%
GTGACCAAAAGCGGCGGAAG+AGG - chr2_3:65996750-65996769 Msa0306860:intron 60.0%
GGATTCGTGGACCGAAGAGG+AGG - chr2_3:65999143-65999162 Msa0306860:CDS 60.0%
ATGGAGTTCTCAGTGCGCCC+TGG + chr2_3:65999233-65999252 None:intergenic 60.0%
!! TTCTCCGCACGGTGCCACTG+TGG - chr2_3:65998981-65999000 Msa0306860:CDS 65.0%
!! TCTCCGCACGGTGCCACTGT+GGG - chr2_3:65998982-65999001 Msa0306860:CDS 65.0%
GTTCCCACAGTGGCACCGTG+CGG + chr2_3:65998988-65999007 None:intergenic 65.0%
GGCGCTTAGTGGCGTTCCAG+TGG + chr2_3:65999262-65999281 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 65996245 65999287 65996245 ID=Msa0306860;Name=Msa0306860
chr2_3 mRNA 65996245 65999287 65996245 ID=Msa0306860-mRNA-1;Parent=Msa0306860;Name=Msa0306860-mRNA-1;_AED=0.18;_eAED=0.21;_QI=0|0|0|1|1|1|3|0|291
chr2_3 exon 65998686 65999287 65998686 ID=Msa0306860-mRNA-1:exon:21988;Parent=Msa0306860-mRNA-1
chr2_3 exon 65998408 65998534 65998408 ID=Msa0306860-mRNA-1:exon:21987;Parent=Msa0306860-mRNA-1
chr2_3 exon 65996245 65996391 65996245 ID=Msa0306860-mRNA-1:exon:21986;Parent=Msa0306860-mRNA-1
chr2_3 CDS 65998686 65999287 65998686 ID=Msa0306860-mRNA-1:cds;Parent=Msa0306860-mRNA-1
chr2_3 CDS 65998408 65998534 65998408 ID=Msa0306860-mRNA-1:cds;Parent=Msa0306860-mRNA-1
chr2_3 CDS 65996245 65996391 65996245 ID=Msa0306860-mRNA-1:cds;Parent=Msa0306860-mRNA-1
Gene Sequence

>Msa0306860

ATGATGATTCCTTCTCAACTAGGTTCAAATATTTCACCTCCACCATCACATTACACCACATATTTGTACCAAAGTCAGTCCAATCAACTTAAAGAAGATCTTTTGAATGAGGCCAACCATCACTCTAGTTTTTCTGCAATGGTTCCTTTGCCCATCAGCCCATTCCCTTTGATCCCAACCCATCGGTACAAGGCTACTCACACCAATGGGTCTCAGAGAGAATTCATCAGTGCTCAAAATCCAATGGTCTTTACACCAAACCATAATAAGATGGAAGACATACATGGTCGCCTTAACACTAGCAAAGGAATTTGGGATTTGTCTACAAAAAATCTCTTTCAATATGGTGAAACTTCGCAACCTCGGGTAAGTCCCTCTCTATCACCATCACTAGCTTATGATGCACATCGATCTGTGTCAGTTAATCCTGAGCTTCAAGGAGATCTTTCATGCAATGATGGAATTGGAAACAAATCCCGAGAAAATGATCAACAATTCGTGCTCAGTGACCAAAAGCGGCGGAAGAGGATTCAAAATAATAATGAAATTCAACACAAGGATCCCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGGTTCTTGTCCAATTGGTGGATCAATTTGGGCTTAGAAAATGGTCCCGTATTGCTAAGTTTCTGAAAGGCAGAATTGGAAAACAATGCAGAGATAGATGGAATAACCATCTTCGACCAAACATTAAGAAGGATTCGTGGACCGAAGAGGAGGAAAAAAGATTAATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAAAGATTGCCAGGGCGCACTGAGAACTCCATCAAGAACCACTGGAACGCCACTAAGCGCCGCCTAA
Protein sequence

>Msa0306860

MMIPSQLGSNISPPPSHYTTYLYQSQSNQLKEDLLNEANHHSSFSAMVPLPISPFPLIPTHRYKATHTNGSQREFISAQNPMVFTPNHNKMEDIHGRLNTSKGIWDLSTKNLFQYGETSQPRVSPSLSPSLAYDAHRSVSVNPELQGDLSCNDGIGNKSRENDQQFVLSDQKRRKRIQNNNEIQHKDPNQIKGQWTSNEDRVLVQLVDQFGLRKWSRIAKFLKGRIGKQCRDRWNNHLRPNIKKDSWTEEEEKRLIEAHKIVGNKWTEISKDCQGALRTPSRTTGTPLSAA*