AlfalfaGEDB | Msa0307010

M. sativa cultivar zhongmu-4 / Msa0307010

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307010	XP_039687084.1	81.148	122	15	1	1	114	1	122	1.01e-62	197

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307010	G7INX6	81.148	122	15	1	1	114	1	122	4.84e-63	197

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0307010	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307010	MtrunA17_Chr2g0281511	81.148	122	15	1	1	114	1	122	9.31e-67	197
Msa0307010	MtrunA17_Chr2g0309121	77.049	122	19	2	1	114	1	121	1.80e-60	181
Msa0307010	MtrunA17_Chr3g0081891	81.250	80	7	1	1	72	1	80	1.02e-38	124
Msa0307010	MtrunA17_Chr7g0276661	31.579	133	65	3	5	112	36	167	7.64e-19	77.0
Msa0307010	MtrunA17_Chr5g0430431	35.789	95	54	2	18	108	163	254	5.34e-16	71.2
Msa0307010	MtrunA17_Chr8g0372431	28.866	97	61	2	24	112	6	102	9.40e-11	54.3

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 21 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAATGTTCATTAT+TGG	0.227491	2_3:+66451691	Msa0307010:CDS
AAGTCAATGGGACTGAATTA+GGG	0.440727	2_3:+66451661	Msa0307010:CDS
ACAGTAGCATACATCCTATT+AGG	0.371456	2_3:-66452067	None:intergenic
AGATTGAAGTTGAAGTCAAT+GGG	0.508813	2_3:+66451649	Msa0307010:CDS
AGCATGCATCATAAATACAT+AGG	0.495837	2_3:+66451968	Msa0307010:CDS
ATCACAATCATAAGATTTAC+CGG	0.322905	2_3:-66451927	None:intergenic
ATGCATCATAAATACATAGG+GGG	0.674005	2_3:+66451971	Msa0307010:CDS
CATGCATCATAAATACATAG+GGG	0.668603	2_3:+66451970	Msa0307010:CDS
CGATCAATAATCCTCCTAAT+AGG	0.349986	2_3:+66452053	Msa0307010:CDS
CTTGAAAAGGGCCTAAAAGT+TGG	0.495134	2_3:+66452013	Msa0307010:CDS

Showing 1 to 10 of 21 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGATTGAAGTTGAAGTCAAT+GGG	+	chr2_3:66451649-66451668	Msa0307010:CDS	30.0%
AGCATGCATCATAAATACAT+AGG	+	chr2_3:66451968-66451987	Msa0307010:CDS	30.0%
GCATGCATCATAAATACATA+GGG	+	chr2_3:66451969-66451988	Msa0307010:CDS	30.0%
CATGCATCATAAATACATAG+GGG	+	chr2_3:66451970-66451989	Msa0307010:CDS	30.0%
ATGCATCATAAATACATAGG+GGG	+	chr2_3:66451971-66451990	Msa0307010:CDS	30.0%
TACGACTTTGTTCTTGAAAA+GGG	+	chr2_3:66452001-66452020	Msa0307010:CDS	30.0%
GAGATTGAAGTTGAAGTCAA+TGG	+	chr2_3:66451648-66451667	Msa0307010:CDS	35.0%
AAGTCAATGGGACTGAATTA+GGG	+	chr2_3:66451661-66451680	Msa0307010:CDS	35.0%
GTACGACTTTGTTCTTGAAA+AGG	+	chr2_3:66452000-66452019	Msa0307010:CDS	35.0%
CGATCAATAATCCTCCTAAT+AGG	+	chr2_3:66452053-66452072	Msa0307010:CDS	35.0%

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	66451637	66452102	66451637	ID=Msa0307010;Name=Msa0307010
chr2_3	mRNA	66451637	66452102	66451637	ID=Msa0307010-mRNA-1;Parent=Msa0307010;Name=Msa0307010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=5\|0\|0\|1\|0\|0\|2\|0\|114
chr2_3	exon	66451637	66451758	66451637	ID=Msa0307010-mRNA-1:exon:22052;Parent=Msa0307010-mRNA-1
chr2_3	exon	66451878	66452102	66451878	ID=Msa0307010-mRNA-1:exon:22053;Parent=Msa0307010-mRNA-1
chr2_3	five_prime_UTR	66451637	66451641	66451637	ID=Msa0307010-mRNA-1:five_prime_utr;Parent=Msa0307010-mRNA-1
chr2_3	CDS	66451642	66451758	66451642	ID=Msa0307010-mRNA-1:cds;Parent=Msa0307010-mRNA-1
chr2_3	CDS	66451878	66452102	66451878	ID=Msa0307010-mRNA-1:cds;Parent=Msa0307010-mRNA-1

Gene Sequence	>Msa0307010 ATGAATGAGATTGAAGTTGAAGTCAATGGGACTGAATTAGGGAATGTTCAAAATGTCAATGTTCATTATTGGAAGTATAATGTTACTGCTTCTATTTTGGATGGAAACAATGTTTTGAATGGTTTGTATATCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACCGGTAAATCTTATGATTGTGATGTTCACACTGCGTCAAAAAGCATGCATCATAAATACATAGGGGGAGGATGGTACGACTTTGTTCTTGAAAAGGGCCTAAAAGTTGGTAACGTTATTTTGTTCACGATCAATAATCCTCCTAATAGGATGTATGCTACTGTCGTTAACTGGGAC
Protein sequence	>Msa0307010 MNEIEVEVNGTELGNVQNVNVHYWKYNVTASILDGNNVLNGLYINQSKILLFDEETGKSYDCDVHTASKSMHHKYIGGGWYDFVLEKGLKVGNVILFTINNPPNRMYATVVNWD