Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309240 | AES63272.2 | 98.333 | 60 | 1 | 0 | 63 | 122 | 1 | 60 | 8.90e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0309240 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGCTGCTGTCTCAATTT+TGG | 0.174192 | 2_4:-3718320 | Msa0309240:CDS |
| CTTCTTCTTCAACTTCCTAA+TGG | 0.279260 | 2_4:-3717125 | Msa0309240:CDS |
| TTCTTCTTCAACTTCCTAAT+GGG | 0.326811 | 2_4:-3717124 | Msa0309240:CDS |
| ACGTCCTCCTCCTCAAAATA+TGG | 0.327173 | 2_4:+3719537 | None:intergenic |
| TATGTGGCGCTCTGGACCTA+TGG | 0.393114 | 2_4:-3718134 | Msa0309240:CDS |
| TTCCTAATGGGTTGAGTTGA+GGG | 0.396719 | 2_4:-3717112 | None:intergenic |
| GGTTGGACATTGTTTGCAAT+TGG | 0.397971 | 2_4:+3718358 | None:intergenic |
| GCAATTGGAGCAGCATCAAT+TGG | 0.414015 | 2_4:+3718337 | None:intergenic |
| CGAGATGTCCCTGCTGCCTC+AGG | 0.421876 | 2_4:-3717183 | Msa0309240:CDS |
| GGATCTCCTCCCATGATTCC+AGG | 0.423283 | 2_4:+3717147 | None:intergenic |
| TGTCCCACCACCTGGAATCA+TGG | 0.424311 | 2_4:-3717157 | Msa0309240:CDS |
| AAAATTGAGACAGCAGCAAT+TGG | 0.438976 | 2_4:+3718322 | None:intergenic |
| AACACTCCTATGTGGCGCTC+TGG | 0.449276 | 2_4:-3718142 | Msa0309240:CDS |
| TCAAGAAATGCCATTGGGCG+TGG | 0.452536 | 2_4:-3718248 | Msa0309240:CDS |
| TCAGGTTCTGTCCCACCACC+TGG | 0.454678 | 2_4:-3717165 | Msa0309240:CDS |
| CCTCCCATGATTCCAGGTGG+TGG | 0.456756 | 2_4:+3717153 | None:intergenic |
| GGCCCTCAACTCAACCCATT+AGG | 0.459546 | 2_4:+3717110 | None:intergenic |
| CATTTACTACAAGAAACATA+TGG | 0.481434 | 2_4:-3717211 | Msa0309240:CDS |
| GGGACAGAACCTGAGGCAGC+AGG | 0.482176 | 2_4:+3717174 | None:intergenic |
| ATGTGGCGCTCTGGACCTAT+GGG | 0.485189 | 2_4:-3718133 | Msa0309240:CDS |
| GAATTCAGACACTGAAAGTC+AGG | 0.494441 | 2_4:-3719514 | Msa0309240:CDS |
| TTTCTTGATCGGCACGGACA+TGG | 0.499473 | 2_4:+3718263 | None:intergenic |
| CTTCCTAATGGGTTGAGTTG+AGG | 0.500624 | 2_4:-3717113 | None:intergenic |
| GTCCCACCACCTGGAATCAT+GGG | 0.504732 | 2_4:-3717156 | Msa0309240:CDS |
| TTGGAGCAGCATCAATTGGT+TGG | 0.505822 | 2_4:+3718341 | None:intergenic |
| CAGAAGGTGGTCGGATCAGA+TGG | 0.507419 | 2_4:+3718190 | None:intergenic |
| AAATTTACCTTTGGACCCAT+AGG | 0.510533 | 2_4:+3718118 | None:intergenic |
| CTCCCATGATTCCAGGTGGT+GGG | 0.519420 | 2_4:+3717154 | None:intergenic |
| GCCCAATGGCATTTCTTGAT+CGG | 0.524113 | 2_4:+3718252 | None:intergenic |
| GCCGATCAAGAAATGCCATT+GGG | 0.532200 | 2_4:-3718253 | Msa0309240:CDS |
| CATTAGGAAGTTGAAGAAGA+AGG | 0.548858 | 2_4:+3717126 | None:intergenic |
| TGCCGATCAAGAAATGCCAT+TGG | 0.553175 | 2_4:-3718254 | Msa0309240:CDS |
| CGACGTCGTCCCACGCCCAA+TGG | 0.553398 | 2_4:+3718238 | None:intergenic |
| CTCTGGACCTATGGGTCCAA+AGG | 0.554114 | 2_4:-3718125 | Msa0309240:intron |
| GCAATGAAAATTTGTGCAGA+AGG | 0.580559 | 2_4:+3718174 | None:intergenic |
| CAAGAAATGCCATTGGGCGT+GGG | 0.597462 | 2_4:-3718247 | Msa0309240:CDS |
| GGACAGAACCTGAGGCAGCA+GGG | 0.617193 | 2_4:+3717175 | None:intergenic |
| AAAGAATCAGTACAATACAT+TGG | 0.618095 | 2_4:+3718286 | None:intergenic |
| ATGGCATTTCTTGATCGGCA+CGG | 0.620469 | 2_4:+3718257 | None:intergenic |
| AAATTTGTGCAGAAGGTGGT+CGG | 0.623430 | 2_4:+3718181 | None:intergenic |
| ATGAAAATTTGTGCAGAAGG+TGG | 0.644289 | 2_4:+3718177 | None:intergenic |
| AGACAAGAAACACTCCTATG+TGG | 0.647405 | 2_4:-3718150 | Msa0309240:CDS |
| ATAGGTCCAGAGCGCCACAT+AGG | 0.654562 | 2_4:+3718136 | None:intergenic |
| AGGTGGTGGGACAGAACCTG+AGG | 0.657762 | 2_4:+3717167 | None:intergenic |
| CAGATGGACGAGCTCGTCCG+CGG | 0.666213 | 2_4:+3718206 | None:intergenic |
| CCACCACCTGGAATCATGGG+AGG | 0.682520 | 2_4:-3717153 | Msa0309240:CDS |
| TCTCCTCCCATGATTCCAGG+TGG | 0.693154 | 2_4:+3717150 | None:intergenic |
| CGACGTCGTTACATCAGCCG+CGG | 0.703348 | 2_4:-3718223 | Msa0309240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACTTACTTTA+GGG | + | chr2_4:3717219-3717238 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACTTACTTT+AGG | + | chr2_4:3717220-3717239 | None:intergenic | 10.0% |
| !! | TAAGACAAATTAATTTAATT+AGG | - | chr2_4:3717662-3717681 | Msa0309240:intron | 10.0% |
| !! | ATTATTAGATTGTATAAATA+AGG | + | chr2_4:3719085-3719104 | None:intergenic | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr2_4:3719308-3719327 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr2_4:3719307-3719326 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr2_4:3719243-3719262 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr2_4:3719242-3719261 | None:intergenic | 15.0% |
| !! | AAAAATACATCAAATATAAG+TGG | + | chr2_4:3717767-3717786 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_4:3718587-3718606 | None:intergenic | 15.0% |
| !! | CATCTTATATATAAAAAGTA+AGG | - | chr2_4:3718640-3718659 | Msa0309240:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+TGG | - | chr2_4:3718648-3718667 | Msa0309240:intron | 15.0% |
| !!! | ATTTTTGAGACATTATTTAA+AGG | - | chr2_4:3718732-3718751 | Msa0309240:intron | 15.0% |
| !! | AAAAAAAAACACAAAACTAA+CGG | + | chr2_4:3718963-3718982 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr2_4:3719242-3719261 | Msa0309240:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr2_4:3719243-3719262 | Msa0309240:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr2_4:3719307-3719326 | Msa0309240:intron | 15.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr2_4:3719377-3719396 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr2_4:3719267-3719286 | None:intergenic | 20.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | + | chr2_4:3717464-3717483 | None:intergenic | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_4:3718866-3718885 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_4:3718870-3718889 | Msa0309240:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr2_4:3719244-3719263 | Msa0309240:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_4:3719267-3719286 | Msa0309240:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2_4:3719377-3719396 | Msa0309240:intron | 20.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr2_4:3719376-3719395 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTTTTTT+GGG | + | chr2_4:3717375-3717394 | None:intergenic | 25.0% |
| !!! | TTGAAATGAGTCAGTTTTTT+TGG | + | chr2_4:3717376-3717395 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGGAAAAG+TGG | + | chr2_4:3717479-3717498 | None:intergenic | 25.0% |
| !!! | AGACTCAAAAGTTTTGATTA+GGG | + | chr2_4:3717820-3717839 | None:intergenic | 25.0% |
| !!! | TAGACTCAAAAGTTTTGATT+AGG | + | chr2_4:3717821-3717840 | None:intergenic | 25.0% |
| ! | AATTAGATGTTTCTTGACTT+TGG | - | chr2_4:3717975-3717994 | Msa0309240:intron | 25.0% |
| ! | AAAGAATCAGTACAATACAT+TGG | + | chr2_4:3718390-3718409 | None:intergenic | 25.0% |
| !!! | AAAAATTCAACTAAGTTGGT+GGG | + | chr2_4:3718718-3718737 | None:intergenic | 25.0% |
| ! | TCTCAAAAATTCAACTAAGT+TGG | + | chr2_4:3718722-3718741 | None:intergenic | 25.0% |
| ! | TTCCAAACAAAAAAAATGCA+GGG | + | chr2_4:3718807-3718826 | None:intergenic | 25.0% |
| ! | ATTCCAAACAAAAAAAATGC+AGG | + | chr2_4:3718808-3718827 | None:intergenic | 25.0% |
| !!! | GCATTTTTTTTGTTTGGAAT+TGG | - | chr2_4:3718808-3718827 | Msa0309240:intron | 25.0% |
| ! | CTTTGTAACAATATTGGTAT+TGG | - | chr2_4:3718839-3718858 | Msa0309240:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_4:3718867-3718886 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_4:3718864-3718883 | Msa0309240:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:3718897-3718916 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGTAG+TGG | - | chr2_4:3718901-3718920 | Msa0309240:intron | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | - | chr2_4:3718980-3718999 | Msa0309240:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | - | chr2_4:3718981-3719000 | Msa0309240:intron | 25.0% |
| ! | CTTTGTGAAAATATTGGTAT+TGG | + | chr2_4:3719008-3719027 | None:intergenic | 25.0% |
| ! | ATAAGGTTTAAATGTGTCAT+TGG | + | chr2_4:3719068-3719087 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_4:3719266-3719285 | Msa0309240:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr2_4:3719354-3719373 | Msa0309240:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr2_4:3719355-3719374 | Msa0309240:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_4:3719376-3719395 | Msa0309240:intron | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_4:3719462-3719481 | Msa0309240:intron | 25.0% |
| ! | CTTAAACATGCCATATTTTG+AGG | - | chr2_4:3717126-3717145 | Msa0309240:CDS | 30.0% |
| TCTGTGTGAAAAACTAAAGT+AGG | - | chr2_4:3717509-3717528 | Msa0309240:intron | 30.0% | |
| CTAAAGTAGGTCAATTATAC+CGG | - | chr2_4:3717522-3717541 | Msa0309240:intron | 30.0% | |
| TAAAGTAGGTCAATTATACC+GGG | - | chr2_4:3717523-3717542 | Msa0309240:intron | 30.0% | |
| CTAAGAGATGAAAATTGACA+TGG | - | chr2_4:3717562-3717581 | Msa0309240:intron | 30.0% | |
| !!! | ACTCAAAAGTTTTGATTAGG+GGG | + | chr2_4:3717818-3717837 | None:intergenic | 30.0% |
| !!! | GACTCAAAAGTTTTGATTAG+GGG | + | chr2_4:3717819-3717838 | None:intergenic | 30.0% |
| TTTATTAGGTGCATTAGACT+TGG | + | chr2_4:3718096-3718115 | None:intergenic | 30.0% | |
| AGTCTAATGCACCTAATAAA+TGG | - | chr2_4:3718096-3718115 | Msa0309240:intron | 30.0% | |
| TAATGCACCTAATAAATGGT+GGG | - | chr2_4:3718100-3718119 | Msa0309240:intron | 30.0% | |
| CAAATTTCCCACCATTTATT+AGG | + | chr2_4:3718110-3718129 | None:intergenic | 30.0% | |
| ! | AATAAATGGTGGGAAATTTG+AGG | - | chr2_4:3718110-3718129 | Msa0309240:intron | 30.0% |
| AAACGTCAGTGACTTAATTA+CGG | - | chr2_4:3718142-3718161 | Msa0309240:CDS | 30.0% | |
| !!! | GTTAGTTTTGAGTGTATTTG+AGG | + | chr2_4:3718277-3718296 | None:intergenic | 30.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_4:3718567-3718586 | None:intergenic | 30.0% |
| ! | CAAAAATTCAACTAAGTTGG+TGG | + | chr2_4:3718719-3718738 | None:intergenic | 30.0% |
| CAATATTGTTACAAAGTGCA+GGG | + | chr2_4:3718835-3718854 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_4:3718898-3718917 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_4:3718895-3718914 | Msa0309240:intron | 30.0% | |
| ! | CAATATTTTCACAAAGTGCA+GGG | - | chr2_4:3719012-3719031 | Msa0309240:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr2_4:3719039-3719058 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_4:3719251-3719270 | Msa0309240:intron | 30.0% | |
| TTCTTCTTCAACTTCCTAAT+GGG | - | chr2_4:3719549-3719568 | Msa0309240:CDS | 30.0% | |
| !! | AAACATGCCATATTTTGAGG+AGG | - | chr2_4:3717129-3717148 | Msa0309240:CDS | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr2_4:3719390-3719409 | None:intergenic | 35.0% | |
| !!! | CTCAAAAGTTTTGATTAGGG+GGG | + | chr2_4:3717817-3717836 | None:intergenic | 35.0% |
| TTATCTCTCGACATGTGATT+TGG | - | chr2_4:3717887-3717906 | Msa0309240:intron | 35.0% | |
| TATCTCTCGACATGTGATTT+GGG | - | chr2_4:3717888-3717907 | Msa0309240:intron | 35.0% | |
| ! | CTAGCACTCACTCTTTTATT+TGG | - | chr2_4:3718050-3718069 | Msa0309240:intron | 35.0% |
| CTAATGCACCTAATAAATGG+TGG | - | chr2_4:3718099-3718118 | Msa0309240:intron | 35.0% | |
| GTAATTAAGTCACTGACGTT+TGG | + | chr2_4:3718143-3718162 | None:intergenic | 35.0% | |
| AACTAACAACGTTTGTGAAC+AGG | - | chr2_4:3718290-3718309 | Msa0309240:CDS | 35.0% | |
| AAAATTGAGACAGCAGCAAT+TGG | + | chr2_4:3718354-3718373 | None:intergenic | 35.0% | |
| ! | AATTGCTGCTGTCTCAATTT+TGG | - | chr2_4:3718353-3718372 | Msa0309240:CDS | 35.0% |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_4:3718499-3718518 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_4:3718502-3718521 | None:intergenic | 35.0% | |
| AAATTTACCTTTGGACCCAT+AGG | + | chr2_4:3718558-3718577 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr2_4:3718776-3718795 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr2_4:3718780-3718799 | Msa0309240:intron | 35.0% |
| !!! | GTCCCTGCATTTTTTTTGTT+TGG | - | chr2_4:3718802-3718821 | Msa0309240:intron | 35.0% |
| CCAATATTGTTACAAAGTGC+AGG | + | chr2_4:3718836-3718855 | None:intergenic | 35.0% | |
| CCTGCACTTTGTAACAATAT+TGG | - | chr2_4:3718833-3718852 | Msa0309240:intron | 35.0% | |
| CCTGCACTTTGTGAAAATAT+TGG | + | chr2_4:3719014-3719033 | None:intergenic | 35.0% | |
| ! | CCAATATTTTCACAAAGTGC+AGG | - | chr2_4:3719011-3719030 | Msa0309240:intron | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr2_4:3719040-3719059 | Msa0309240:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr2_4:3719041-3719060 | Msa0309240:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr2_4:3719045-3719064 | None:intergenic | 35.0% |
| CAAAGTAGGTCAATTATACC+GGG | + | chr2_4:3719207-3719226 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr2_4:3719208-3719227 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr2_4:3719221-3719240 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr2_4:3719390-3719409 | Msa0309240:intron | 35.0% | |
| CATTAGGAAGTTGAAGAAGA+AGG | + | chr2_4:3719550-3719569 | None:intergenic | 35.0% | |
| CTTCTTCTTCAACTTCCTAA+TGG | - | chr2_4:3719548-3719567 | Msa0309240:CDS | 35.0% | |
| GAATTCAGACACTGAAAGTC+AGG | - | chr2_4:3717159-3717178 | Msa0309240:CDS | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr2_4:3719391-3719410 | None:intergenic | 40.0% | |
| ATCTCTCGACATGTGATTTG+GGG | - | chr2_4:3717889-3717908 | Msa0309240:intron | 40.0% | |
| ! | TTAGGTGCATTAGACTTGGT+GGG | + | chr2_4:3718092-3718111 | None:intergenic | 40.0% |
| ATTAGGTGCATTAGACTTGG+TGG | + | chr2_4:3718093-3718112 | None:intergenic | 40.0% | |
| TTAAGTCACTGACGTTTGGT+AGG | + | chr2_4:3718139-3718158 | None:intergenic | 40.0% | |
| GGTTGGACATTGTTTGCAAT+TGG | + | chr2_4:3718318-3718337 | None:intergenic | 40.0% | |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_4:3718495-3718514 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_4:3718523-3718542 | Msa0309240:intron | 40.0% | |
| !! | GCATGAACATTTTGGTATGC+TGG | + | chr2_4:3718689-3718708 | None:intergenic | 40.0% |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_4:3718697-3718716 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr2_4:3718777-3718796 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr2_4:3718774-3718793 | Msa0309240:intron | 40.0% |
| CCATGTGGCATGAAATGATT+GGG | - | chr2_4:3718926-3718945 | Msa0309240:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr2_4:3719205-3719224 | Msa0309240:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr2_4:3719391-3719410 | Msa0309240:intron | 40.0% | |
| !! | CATGCCATATTTTGAGGAGG+AGG | - | chr2_4:3717132-3717151 | Msa0309240:CDS | 45.0% |
| ACGTCCTCCTCCTCAAAATA+TGG | + | chr2_4:3717139-3717158 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr2_4:3717527-3717546 | Msa0309240:intron | 45.0% | |
| TTGGAGCAGCATCAATTGGT+TGG | + | chr2_4:3718335-3718354 | None:intergenic | 45.0% | |
| GCAATTGGAGCAGCATCAAT+TGG | + | chr2_4:3718339-3718358 | None:intergenic | 45.0% | |
| ATGGCATTTCTTGATCGGCA+CGG | + | chr2_4:3718419-3718438 | None:intergenic | 45.0% | |
| TGCCGATCAAGAAATGCCAT+TGG | - | chr2_4:3718419-3718438 | Msa0309240:intron | 45.0% | |
| GCCGATCAAGAAATGCCATT+GGG | - | chr2_4:3718420-3718439 | Msa0309240:intron | 45.0% | |
| GCCCAATGGCATTTCTTGAT+CGG | + | chr2_4:3718424-3718443 | None:intergenic | 45.0% | |
| !! | ATATTGGTAGTGGTGCCATG+TGG | - | chr2_4:3718911-3718930 | Msa0309240:intron | 45.0% |
| GCCATGTGGCATGAAATGAT+TGG | - | chr2_4:3718925-3718944 | Msa0309240:intron | 45.0% | |
| CCCAATCATTTCATGCCACA+TGG | + | chr2_4:3718929-3718948 | None:intergenic | 45.0% | |
| CAAAACTAACGGAGTGCACA+TGG | + | chr2_4:3718952-3718971 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr2_4:3717527-3717546 | None:intergenic | 45.0% | |
| ! | GACTTTTTGTGCAATGCGTG+TGG | - | chr2_4:3719439-3719458 | Msa0309240:intron | 45.0% |
| !!! | TAATAGTATAATTTTTTTTA+AGG | + | chr2_4:3717612-3717631 | None:intergenic | 5.0% |
| !! | AAAAAATTTAAGAAAAATAA+AGG | + | chr2_4:3717920-3717939 | None:intergenic | 5.0% |
| !!! | TTTTTATTGAAATAATAAAA+TGG | - | chr2_4:3718246-3718265 | Msa0309240:CDS | 5.0% |
| !! | AATTAAATAAAAAAGAAATT+AGG | - | chr2_4:3719102-3719121 | Msa0309240:intron | 5.0% |
| ! | TTTTTGTACTCCCTCCGTCC+CGG | - | chr2_4:3717318-3717337 | Msa0309240:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr2_4:3719395-3719414 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr2_4:3717531-3717550 | Msa0309240:intron | 50.0% | |
| TTTCTTGATCGGCACGGACA+TGG | + | chr2_4:3718413-3718432 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_4:3718425-3718444 | Msa0309240:intron | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_4:3718426-3718445 | Msa0309240:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr2_4:3719395-3719414 | Msa0309240:intron | 50.0% | |
| AGTATATACTCCCTCCGTCC+CGG | + | chr2_4:3719412-3719431 | None:intergenic | 50.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr2_4:3719399-3719418 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr2_4:3717530-3717549 | Msa0309240:intron | 55.0% | |
| AGATGATACTCCCTCCGTCC+CGG | + | chr2_4:3717544-3717563 | None:intergenic | 55.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_4:3718486-3718505 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_4:3718531-3718550 | Msa0309240:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_4:3718540-3718559 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_4:3718539-3718558 | Msa0309240:intron | 55.0% |
| ! | ATGTGGCGCTCTGGACCTAT+GGG | - | chr2_4:3718540-3718559 | Msa0309240:intron | 55.0% |
| CTCTGGACCTATGGGTCCAA+AGG | - | chr2_4:3718548-3718567 | Msa0309240:intron | 55.0% | |
| ! | CTGTGTTACTACCTCCGTCC+CGG | - | chr2_4:3719186-3719205 | Msa0309240:intron | 55.0% |
| GGTCAATTATACCGGGACGG+AGG | + | chr2_4:3717530-3717549 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr2_4:3719399-3719418 | Msa0309240:intron | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_4:3719516-3719535 | Msa0309240:CDS | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_4:3719517-3719536 | Msa0309240:CDS | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_4:3719522-3719541 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_4:3719526-3719545 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_4:3719529-3719548 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr2_4:3719398-3719417 | None:intergenic | 60.0% | |
| CGACGTCGTTACATCAGCCG+CGG | - | chr2_4:3718450-3718469 | Msa0309240:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr2_4:3719398-3719417 | Msa0309240:intron | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_4:3719501-3719520 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_4:3719509-3719528 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_4:3719508-3719527 | Msa0309240:CDS | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_4:3719523-3719542 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_4:3719520-3719539 | Msa0309240:CDS | 60.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_4:3718470-3718489 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_4:3719490-3719509 | Msa0309240:CDS | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_4:3719502-3719521 | None:intergenic | 65.0% | |
| CGACGTCGTCCCACGCCCAA+TGG | + | chr2_4:3718438-3718457 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3717115 | 3719580 | 3717115 | ID=Msa0309240;Name=Msa0309240 |
| chr2_4 | mRNA | 3717115 | 3719580 | 3717115 | ID=Msa0309240-mRNA-1;Parent=Msa0309240;Name=Msa0309240-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.33|1|1|3|0|168 |
| chr2_4 | exon | 3719473 | 3719580 | 3719473 | ID=Msa0309240-mRNA-1:exon:1240;Parent=Msa0309240-mRNA-1 |
| chr2_4 | exon | 3718126 | 3718383 | 3718126 | ID=Msa0309240-mRNA-1:exon:1239;Parent=Msa0309240-mRNA-1 |
| chr2_4 | exon | 3717115 | 3717255 | 3717115 | ID=Msa0309240-mRNA-1:exon:1238;Parent=Msa0309240-mRNA-1 |
| chr2_4 | CDS | 3719473 | 3719580 | 3719473 | ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1 |
| chr2_4 | CDS | 3718126 | 3718383 | 3718126 | ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1 |
| chr2_4 | CDS | 3717115 | 3717255 | 3717115 | ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
