AlfalfaGEDB | Msa0309240

M. sativa cultivar zhongmu-4 / Msa0309240

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0309240	AES63272.2	98.333	60	1	0	63	122	1	60	8.90e-37	133

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0309240	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 48 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAGACAGCAGCAAT+TGG	0.438976	2_4:+3718322	None:intergenic
AAAGAATCAGTACAATACAT+TGG	0.618095	2_4:+3718286	None:intergenic
AAATTTACCTTTGGACCCAT+AGG	0.510533	2_4:+3718118	None:intergenic
AAATTTGTGCAGAAGGTGGT+CGG	0.623430	2_4:+3718181	None:intergenic
AACACTCCTATGTGGCGCTC+TGG	0.449276	2_4:-3718142	Msa0309240:CDS
AATTGCTGCTGTCTCAATTT+TGG	0.174192	2_4:-3718320	Msa0309240:CDS
ACGTCCTCCTCCTCAAAATA+TGG	0.327173	2_4:+3719537	None:intergenic
AGACAAGAAACACTCCTATG+TGG	0.647405	2_4:-3718150	Msa0309240:CDS
AGGTGGTGGGACAGAACCTG+AGG	0.657762	2_4:+3717167	None:intergenic
ATAGGTCCAGAGCGCCACAT+AGG	0.654562	2_4:+3718136	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTGTGAAAAACTAAAGT+AGG	-	chr2_4:3717509-3717528	Msa0309240:intron	30.0%
CTAAAGTAGGTCAATTATAC+CGG	-	chr2_4:3717522-3717541	Msa0309240:intron	30.0%
TAAAGTAGGTCAATTATACC+GGG	-	chr2_4:3717523-3717542	Msa0309240:intron	30.0%
CTAAGAGATGAAAATTGACA+TGG	-	chr2_4:3717562-3717581	Msa0309240:intron	30.0%
TTTATTAGGTGCATTAGACT+TGG	+	chr2_4:3718096-3718115	None:intergenic	30.0%
AGTCTAATGCACCTAATAAA+TGG	-	chr2_4:3718096-3718115	Msa0309240:intron	30.0%
TAATGCACCTAATAAATGGT+GGG	-	chr2_4:3718100-3718119	Msa0309240:intron	30.0%
CAAATTTCCCACCATTTATT+AGG	+	chr2_4:3718110-3718129	None:intergenic	30.0%
AAACGTCAGTGACTTAATTA+CGG	-	chr2_4:3718142-3718161	Msa0309240:CDS	30.0%
CAATATTGTTACAAAGTGCA+GGG	+	chr2_4:3718835-3718854	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	3717115	3719580	3717115	ID=Msa0309240;Name=Msa0309240
chr2_4	mRNA	3717115	3719580	3717115	ID=Msa0309240-mRNA-1;Parent=Msa0309240;Name=Msa0309240-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|168
chr2_4	exon	3719473	3719580	3719473	ID=Msa0309240-mRNA-1:exon:1240;Parent=Msa0309240-mRNA-1
chr2_4	exon	3718126	3718383	3718126	ID=Msa0309240-mRNA-1:exon:1239;Parent=Msa0309240-mRNA-1
chr2_4	exon	3717115	3717255	3717115	ID=Msa0309240-mRNA-1:exon:1238;Parent=Msa0309240-mRNA-1
chr2_4	CDS	3719473	3719580	3719473	ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1
chr2_4	CDS	3718126	3718383	3718126	ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1
chr2_4	CDS	3717115	3717255	3717115	ID=Msa0309240-mRNA-1:cds;Parent=Msa0309240-mRNA-1

Gene Sequence

>Msa0309240

ATGGACTTTGACTTAAACATGCCATATTTTGAGGAGGAGGACGTGAATTCAGACACTGAAAGTCAGGTTTCATCACACATTCAGAGCAATACTGAAAATATCCCTAAAGATCCAATTGCAAACAATGTCCAACCAATTGATGCTGCTCCAATTGCTGCTGTCTCAATTTTGGTTGATGCTCAACCAATGTATTGTACTGATTCTTTCCATGTCCGTGCCGATCAAGAAATGCCATTGGGCGTGGGACGACGTCGTTACATCAGCCGCGGACGAGCTCGTCCATCTGATCCGACCACCTTCTGCACAAATTTTCATTGCAAGACAAGAAACACTCCTATGTGGCGCTCTGGACCTATGGGTCCAAAGACTTTTTGTGCAATGCGTGTGGCATTTACTACAAGAAACATATGGTTCGTCGAGATGTCCCTGCTGCCTCAGGTTCTGTCCCACCACCTGGAATCATGGGAGGAGATCCTTCTTCTTCAACTTCCTAATGGGTTGAGTTGA

Protein sequence

>Msa0309240

MDFDLNMPYFEEEDVNSDTESQVSSHIQSNTENIPKDPIANNVQPIDAAPIAAVSILVDAQPMYCTDSFHVRADQEMPLGVGRRRYISRGRARPSDPTTFCTNFHCKTRNTPMWRSGPMGPKTFCAMRVAFTTRNIWFVEMSLLPQVLSHHLESWEEILLLQLPNGLS*