Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309260 | AES63272.2 | 87.379 | 103 | 10 | 1 | 1 | 100 | 1 | 103 | 4.23e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309260 | sp|Q9LT45|GAT29_ARATH | 61.538 | 39 | 15 | 0 | 39 | 77 | 159 | 197 | 3.72e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0309260 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309260 | MtrunA17_Chr8g0340401 | 52.727 | 55 | 22 | 2 | 33 | 83 | 217 | 271 | 3.16e-11 | 58.2 |
| Msa0309260 | MtrunA17_Chr3g0140331 | 60.465 | 43 | 16 | 1 | 42 | 83 | 256 | 298 | 6.09e-11 | 57.4 |
| Msa0309260 | MtrunA17_Chr7g0271861 | 66.667 | 36 | 10 | 1 | 38 | 73 | 23 | 56 | 6.12e-11 | 55.1 |
| Msa0309260 | MtrunA17_Chr7g0253101 | 64.865 | 37 | 11 | 1 | 35 | 71 | 186 | 220 | 6.86e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309260 | AT3G20750.1 | 61.538 | 39 | 15 | 0 | 39 | 77 | 159 | 197 | 3.78e-13 | 62.8 |
| Msa0309260 | AT4G32890.1 | 60.465 | 43 | 16 | 1 | 42 | 83 | 200 | 242 | 9.20e-12 | 59.7 |
| Msa0309260 | AT5G25830.1 | 42.466 | 73 | 34 | 2 | 19 | 83 | 192 | 264 | 2.56e-11 | 58.5 |
Find 38 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCAACTTCCTAA+TGG | 0.279260 | 2_4:-3744820 | None:intergenic |
| TATGTGGCGCTCTGGACCTA+TGG | 0.393114 | 2_4:-3745675 | Msa0309260:CDS |
| CGAGATGTCCCTGCTGCCTC+AGG | 0.421876 | 2_4:-3744878 | Msa0309260:CDS |
| GGATCTCCTCCCATGATTCC+AGG | 0.423283 | 2_4:+3744842 | None:intergenic |
| TGTCCCACCACCTGGAATCA+TGG | 0.424311 | 2_4:-3744852 | Msa0309260:CDS |
| AACACTCCTATGTGGCGCTC+TGG | 0.449276 | 2_4:-3745683 | Msa0309260:CDS |
| TCAAGAAATGCCATTGGGCG+TGG | 0.452536 | 2_4:-3745789 | Msa0309260:CDS |
| TCAGGTTCTGTCCCACCACC+TGG | 0.454678 | 2_4:-3744860 | Msa0309260:CDS |
| CCTCCCATGATTCCAGGTGG+TGG | 0.456756 | 2_4:+3744848 | None:intergenic |
| CATTTACTACAAGAAACATA+TGG | 0.481434 | 2_4:-3744906 | Msa0309260:CDS |
| GGGACAGAACCTGAGGCAGC+AGG | 0.482176 | 2_4:+3744869 | None:intergenic |
| ATGTGGCGCTCTGGACCTAT+GGG | 0.485189 | 2_4:-3745674 | Msa0309260:CDS |
| TTTCTTGATCGGCACGGACA+TGG | 0.499473 | 2_4:+3745804 | None:intergenic |
| GTCCCACCACCTGGAATCAT+GGG | 0.504732 | 2_4:-3744851 | Msa0309260:CDS |
| CAGAAGGTGGTCGGATCAGA+TGG | 0.507419 | 2_4:+3745731 | None:intergenic |
| AAATTTACCTTTGGACCCAT+AGG | 0.510533 | 2_4:+3745659 | None:intergenic |
| CTCCCATGATTCCAGGTGGT+GGG | 0.519420 | 2_4:+3744849 | None:intergenic |
| GCCCAATGGCATTTCTTGAT+CGG | 0.524113 | 2_4:+3745793 | None:intergenic |
| GCCGATCAAGAAATGCCATT+GGG | 0.532200 | 2_4:-3745794 | Msa0309260:CDS |
| CATTAGGAAGTTGAAGAAGA+AGG | 0.548858 | 2_4:+3744821 | None:intergenic |
| TGCCGATCAAGAAATGCCAT+TGG | 0.553175 | 2_4:-3745795 | Msa0309260:CDS |
| CGACGTCGTCCCACGCCCAA+TGG | 0.553398 | 2_4:+3745779 | None:intergenic |
| CTCTGGACCTATGGGTCCAA+AGG | 0.554114 | 2_4:-3745666 | Msa0309260:intron |
| GCAATGAAAATTTGTGCAGA+AGG | 0.580559 | 2_4:+3745715 | None:intergenic |
| CAAGAAATGCCATTGGGCGT+GGG | 0.597462 | 2_4:-3745788 | Msa0309260:CDS |
| GGACAGAACCTGAGGCAGCA+GGG | 0.617193 | 2_4:+3744870 | None:intergenic |
| AAAGAATCAGTACAATACAT+TGG | 0.618095 | 2_4:+3745827 | None:intergenic |
| ATGGCATTTCTTGATCGGCA+CGG | 0.620469 | 2_4:+3745798 | None:intergenic |
| AAATTTGTGCAGAAGGTGGT+CGG | 0.623430 | 2_4:+3745722 | None:intergenic |
| ATGAAAATTTGTGCAGAAGG+TGG | 0.644289 | 2_4:+3745718 | None:intergenic |
| AGACAAGAAACACTCCTATG+TGG | 0.647405 | 2_4:-3745691 | Msa0309260:CDS |
| ATAGGTCCAGAGCGCCACAT+AGG | 0.654562 | 2_4:+3745677 | None:intergenic |
| CAGACTTTGTGCAATGCGTG+TGG | 0.657380 | 2_4:-3744929 | Msa0309260:CDS |
| AGGTGGTGGGACAGAACCTG+AGG | 0.657762 | 2_4:+3744862 | None:intergenic |
| CAGATGGACGAGCTCGTCCG+CGG | 0.666213 | 2_4:+3745747 | None:intergenic |
| CCACCACCTGGAATCATGGG+AGG | 0.682520 | 2_4:-3744848 | Msa0309260:CDS |
| TCTCCTCCCATGATTCCAGG+TGG | 0.693154 | 2_4:+3744845 | None:intergenic |
| CGACGTCGTTACATCAGCCG+CGG | 0.703348 | 2_4:-3745764 | Msa0309260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAGATTGTATAAATA+AGG | + | chr2_4:3745598-3745617 | None:intergenic | 10.0% |
| !! | ATTATTAGATTGTATAAATA+AGG | + | chr2_4:3745598-3745617 | None:intergenic | 10.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_4:3745020-3745039 | None:intergenic | 15.0% |
| !! | CATCTTATATATAAAAAGTA+AGG | - | chr2_4:3745073-3745092 | Msa0309260:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+TGG | - | chr2_4:3745081-3745100 | Msa0309260:intron | 15.0% |
| !!! | ATTTTTGAGACATTATTTAT+AGG | - | chr2_4:3745165-3745184 | Msa0309260:intron | 15.0% |
| !! | TTAAAAAAACACAAAACTAT+TGG | - | chr2_4:3745314-3745333 | Msa0309260:intron | 15.0% |
| !! | AAAAAAAAACACAAAACTAA+CGG | + | chr2_4:3745445-3745464 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTAATAATCAGT+TGG | + | chr2_4:3745020-3745039 | None:intergenic | 15.0% |
| !! | CATCTTATATATAAAAAGTA+AGG | - | chr2_4:3745073-3745092 | Msa0309260:intron | 15.0% |
| !! | ATATAAAAAGTAAGGAATTA+TGG | - | chr2_4:3745081-3745100 | Msa0309260:intron | 15.0% |
| !!! | ATTTTTGAGACATTATTTAT+AGG | - | chr2_4:3745165-3745184 | Msa0309260:intron | 15.0% |
| !! | TTAAAAAAACACAAAACTAT+TGG | - | chr2_4:3745314-3745333 | Msa0309260:intron | 15.0% |
| !! | AAAAAAAAACACAAAACTAA+CGG | + | chr2_4:3745445-3745464 | None:intergenic | 15.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_4:3745272-3745291 | Msa0309260:intron | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_4:3745347-3745366 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_4:3745272-3745291 | Msa0309260:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr2_4:3745272-3745291 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_4:3745272-3745291 | Msa0309260:intron | 20.0% |
| !!! | CAATATTTTTACAAAGTACA+GGG | + | chr2_4:3745347-3745366 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | - | chr2_4:3745272-3745291 | Msa0309260:intron | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr2_4:3745272-3745291 | None:intergenic | 20.0% |
| !!! | AAAAATTCAACTAAGTTGGT+GGG | + | chr2_4:3745151-3745170 | None:intergenic | 25.0% |
| ! | TCTCAAAAATTCAACTAAGT+TGG | + | chr2_4:3745155-3745174 | None:intergenic | 25.0% |
| ! | TTCCAAACAAAAAAAATGCA+GGG | + | chr2_4:3745240-3745259 | None:intergenic | 25.0% |
| ! | ATTCCAAACAAAAAAAATGC+AGG | + | chr2_4:3745241-3745260 | None:intergenic | 25.0% |
| !!! | GCATTTTTTTTGTTTGGAAT+TGG | - | chr2_4:3745241-3745260 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:3745494-3745513 | None:intergenic | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | + | chr2_4:3745463-3745482 | None:intergenic | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | + | chr2_4:3745462-3745481 | None:intergenic | 25.0% |
| ! | AAACACAAAACTATTGGTAT+TGG | - | chr2_4:3745320-3745339 | Msa0309260:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_4:3745348-3745367 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_4:3745345-3745364 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:3745494-3745513 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGTAG+TGG | - | chr2_4:3745382-3745401 | Msa0309260:intron | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | - | chr2_4:3745462-3745481 | Msa0309260:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | - | chr2_4:3745463-3745482 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr2_4:3745494-3745513 | Msa0309260:intron | 25.0% |
| ! | ATAAGGTTTAAATGTGTCAT+TGG | + | chr2_4:3745581-3745600 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_4:3745741-3745760 | Msa0309260:CDS | 25.0% |
| !!! | AAAAATTCAACTAAGTTGGT+GGG | + | chr2_4:3745151-3745170 | None:intergenic | 25.0% |
| ! | TCTCAAAAATTCAACTAAGT+TGG | + | chr2_4:3745155-3745174 | None:intergenic | 25.0% |
| ! | TTCCAAACAAAAAAAATGCA+GGG | + | chr2_4:3745240-3745259 | None:intergenic | 25.0% |
| ! | ATTCCAAACAAAAAAAATGC+AGG | + | chr2_4:3745241-3745260 | None:intergenic | 25.0% |
| !!! | GCATTTTTTTTGTTTGGAAT+TGG | - | chr2_4:3745241-3745260 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:3745494-3745513 | None:intergenic | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | + | chr2_4:3745463-3745482 | None:intergenic | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | + | chr2_4:3745462-3745481 | None:intergenic | 25.0% |
| ! | AAACACAAAACTATTGGTAT+TGG | - | chr2_4:3745320-3745339 | Msa0309260:intron | 25.0% |
| !!! | CCAATATTTTTACAAAGTAC+AGG | + | chr2_4:3745348-3745367 | None:intergenic | 25.0% |
| ! | CCTGTACTTTGTAAAAATAT+TGG | - | chr2_4:3745345-3745364 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:3745494-3745513 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGTAG+TGG | - | chr2_4:3745382-3745401 | Msa0309260:intron | 25.0% |
| !! | TTTTAACAGAAAGTTAACAG+AGG | - | chr2_4:3745462-3745481 | Msa0309260:intron | 25.0% |
| ! | TTTAACAGAAAGTTAACAGA+GGG | - | chr2_4:3745463-3745482 | Msa0309260:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr2_4:3745494-3745513 | Msa0309260:intron | 25.0% |
| ! | ATAAGGTTTAAATGTGTCAT+TGG | + | chr2_4:3745581-3745600 | None:intergenic | 25.0% |
| ! | CATTTACTACAAGAAACATA+TGG | - | chr2_4:3745741-3745760 | Msa0309260:CDS | 25.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_4:3745000-3745019 | None:intergenic | 30.0% |
| ! | CAAAAATTCAACTAAGTTGG+TGG | + | chr2_4:3745152-3745171 | None:intergenic | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_4:3745493-3745512 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_4:3745266-3745285 | Msa0309260:intron | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_4:3745493-3745512 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_4:3745266-3745285 | Msa0309260:intron | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr2_4:3745266-3745285 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr2_4:3745493-3745512 | Msa0309260:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr2_4:3745521-3745540 | None:intergenic | 30.0% |
| !! | TGGTGTTGTAAATTTACCTT+TGG | + | chr2_4:3745000-3745019 | None:intergenic | 30.0% |
| ! | CAAAAATTCAACTAAGTTGG+TGG | + | chr2_4:3745152-3745171 | None:intergenic | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_4:3745493-3745512 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_4:3745266-3745285 | Msa0309260:intron | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr2_4:3745493-3745512 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr2_4:3745266-3745285 | Msa0309260:intron | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr2_4:3745266-3745285 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr2_4:3745493-3745512 | Msa0309260:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr2_4:3745521-3745540 | None:intergenic | 30.0% |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_4:3744932-3744951 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_4:3744935-3744954 | None:intergenic | 35.0% | |
| AAATTTACCTTTGGACCCAT+AGG | + | chr2_4:3744991-3745010 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr2_4:3745554-3745573 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr2_4:3745213-3745232 | Msa0309260:intron | 35.0% |
| !!! | GTCCCTGCATTTTTTTTGTT+TGG | - | chr2_4:3745235-3745254 | Msa0309260:intron | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr2_4:3745522-3745541 | Msa0309260:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr2_4:3745523-3745542 | Msa0309260:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr2_4:3745527-3745546 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | + | chr2_4:3745213-3745232 | None:intergenic | 35.0% |
| ! | CAAAATCTGATGAAAGTGCA+GGG | - | chr2_4:3745554-3745573 | Msa0309260:intron | 35.0% |
| ATGAAAATTTGTGCAGAAGG+TGG | + | chr2_4:3744932-3744951 | None:intergenic | 35.0% | |
| GCAATGAAAATTTGTGCAGA+AGG | + | chr2_4:3744935-3744954 | None:intergenic | 35.0% | |
| AAATTTACCTTTGGACCCAT+AGG | + | chr2_4:3744991-3745010 | None:intergenic | 35.0% | |
| ! | CAAAATCTGATGAAAGTGCA+GGG | + | chr2_4:3745554-3745573 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | - | chr2_4:3745213-3745232 | Msa0309260:intron | 35.0% |
| !!! | GTCCCTGCATTTTTTTTGTT+TGG | - | chr2_4:3745235-3745254 | Msa0309260:intron | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr2_4:3745522-3745541 | Msa0309260:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr2_4:3745523-3745542 | Msa0309260:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr2_4:3745527-3745546 | None:intergenic | 35.0% |
| !! | CTTTCATCAGATTTTGGCAT+TGG | + | chr2_4:3745213-3745232 | None:intergenic | 35.0% |
| ! | CAAAATCTGATGAAAGTGCA+GGG | - | chr2_4:3745554-3745573 | Msa0309260:intron | 35.0% |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_4:3744928-3744947 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_4:3744956-3744975 | Msa0309260:intron | 40.0% | |
| !! | GCATGAACATTTTGGTATGC+TGG | + | chr2_4:3745122-3745141 | None:intergenic | 40.0% |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_4:3745130-3745149 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr2_4:3745553-3745572 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr2_4:3745207-3745226 | Msa0309260:intron | 40.0% |
| CCATGTGGCATGAAATGATT+GGG | - | chr2_4:3745407-3745426 | Msa0309260:intron | 40.0% | |
| ! | CCTGCACTTTCATCAGATTT+TGG | + | chr2_4:3745207-3745226 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | - | chr2_4:3745553-3745572 | Msa0309260:intron | 40.0% |
| AAATTTGTGCAGAAGGTGGT+CGG | + | chr2_4:3744928-3744947 | None:intergenic | 40.0% | |
| AGACAAGAAACACTCCTATG+TGG | - | chr2_4:3744956-3744975 | Msa0309260:intron | 40.0% | |
| !! | GCATGAACATTTTGGTATGC+TGG | + | chr2_4:3745122-3745141 | None:intergenic | 40.0% |
| ! | GGCTAACTGCATGAACATTT+TGG | + | chr2_4:3745130-3745149 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | + | chr2_4:3745553-3745572 | None:intergenic | 40.0% |
| ! | CCTGCACTTTCATCAGATTT+TGG | - | chr2_4:3745207-3745226 | Msa0309260:intron | 40.0% |
| CCATGTGGCATGAAATGATT+GGG | - | chr2_4:3745407-3745426 | Msa0309260:intron | 40.0% | |
| ! | CCTGCACTTTCATCAGATTT+TGG | + | chr2_4:3745207-3745226 | None:intergenic | 40.0% |
| ! | CCAAAATCTGATGAAAGTGC+AGG | - | chr2_4:3745553-3745572 | Msa0309260:intron | 40.0% |
| ATGGCATTTCTTGATCGGCA+CGG | + | chr2_4:3744852-3744871 | None:intergenic | 45.0% | |
| TGCCGATCAAGAAATGCCAT+TGG | - | chr2_4:3744852-3744871 | Msa0309260:CDS | 45.0% | |
| GCCGATCAAGAAATGCCATT+GGG | - | chr2_4:3744853-3744872 | Msa0309260:CDS | 45.0% | |
| GCCCAATGGCATTTCTTGAT+CGG | + | chr2_4:3744857-3744876 | None:intergenic | 45.0% | |
| !! | ATATTGGTAGTGGTGCCATG+TGG | - | chr2_4:3745392-3745411 | Msa0309260:intron | 45.0% |
| GCCATGTGGCATGAAATGAT+TGG | - | chr2_4:3745406-3745425 | Msa0309260:intron | 45.0% | |
| CCCAATCATTTCATGCCACA+TGG | + | chr2_4:3745410-3745429 | None:intergenic | 45.0% | |
| CATGAAATGATTGGGCCATG+TGG | - | chr2_4:3745415-3745434 | Msa0309260:intron | 45.0% | |
| ! | AAAACTAACGGAGTGCCACA+TGG | + | chr2_4:3745433-3745452 | None:intergenic | 45.0% |
| ATGGCATTTCTTGATCGGCA+CGG | + | chr2_4:3744852-3744871 | None:intergenic | 45.0% | |
| TGCCGATCAAGAAATGCCAT+TGG | - | chr2_4:3744852-3744871 | Msa0309260:CDS | 45.0% | |
| GCCGATCAAGAAATGCCATT+GGG | - | chr2_4:3744853-3744872 | Msa0309260:CDS | 45.0% | |
| GCCCAATGGCATTTCTTGAT+CGG | + | chr2_4:3744857-3744876 | None:intergenic | 45.0% | |
| !! | ATATTGGTAGTGGTGCCATG+TGG | - | chr2_4:3745392-3745411 | Msa0309260:intron | 45.0% |
| GCCATGTGGCATGAAATGAT+TGG | - | chr2_4:3745406-3745425 | Msa0309260:intron | 45.0% | |
| CCCAATCATTTCATGCCACA+TGG | + | chr2_4:3745410-3745429 | None:intergenic | 45.0% | |
| CATGAAATGATTGGGCCATG+TGG | - | chr2_4:3745415-3745434 | Msa0309260:intron | 45.0% | |
| ! | AAAACTAACGGAGTGCCACA+TGG | + | chr2_4:3745433-3745452 | None:intergenic | 45.0% |
| !! | AATTAAATAAAAAAGAAATT+AGG | - | chr2_4:3745615-3745634 | Msa0309260:intron | 5.0% |
| !! | AATTAAATAAAAAAGAAATT+AGG | - | chr2_4:3745615-3745634 | Msa0309260:intron | 5.0% |
| TTTCTTGATCGGCACGGACA+TGG | + | chr2_4:3744846-3744865 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_4:3744858-3744877 | Msa0309260:CDS | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_4:3744859-3744878 | Msa0309260:CDS | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_4:3745718-3745737 | Msa0309260:CDS | 50.0% | |
| TTTCTTGATCGGCACGGACA+TGG | + | chr2_4:3744846-3744865 | None:intergenic | 50.0% | |
| TCAAGAAATGCCATTGGGCG+TGG | - | chr2_4:3744858-3744877 | Msa0309260:CDS | 50.0% | |
| CAAGAAATGCCATTGGGCGT+GGG | - | chr2_4:3744859-3744878 | Msa0309260:CDS | 50.0% | |
| CAGACTTTGTGCAATGCGTG+TGG | - | chr2_4:3745718-3745737 | Msa0309260:CDS | 50.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_4:3744919-3744938 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_4:3744964-3744983 | Msa0309260:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_4:3744973-3744992 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_4:3744972-3744991 | Msa0309260:intron | 55.0% |
| ! | ATGTGGCGCTCTGGACCTAT+GGG | - | chr2_4:3744973-3744992 | Msa0309260:intron | 55.0% |
| CTCTGGACCTATGGGTCCAA+AGG | - | chr2_4:3744981-3745000 | Msa0309260:intron | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_4:3745795-3745814 | Msa0309260:CDS | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_4:3745796-3745815 | Msa0309260:CDS | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_4:3745801-3745820 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_4:3745805-3745824 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_4:3745808-3745827 | None:intergenic | 55.0% | |
| CAGAAGGTGGTCGGATCAGA+TGG | + | chr2_4:3744919-3744938 | None:intergenic | 55.0% | |
| AACACTCCTATGTGGCGCTC+TGG | - | chr2_4:3744964-3744983 | Msa0309260:intron | 55.0% | |
| ! | ATAGGTCCAGAGCGCCACAT+AGG | + | chr2_4:3744973-3744992 | None:intergenic | 55.0% |
| ! | TATGTGGCGCTCTGGACCTA+TGG | - | chr2_4:3744972-3744991 | Msa0309260:intron | 55.0% |
| ! | ATGTGGCGCTCTGGACCTAT+GGG | - | chr2_4:3744973-3744992 | Msa0309260:intron | 55.0% |
| CTCTGGACCTATGGGTCCAA+AGG | - | chr2_4:3744981-3745000 | Msa0309260:intron | 55.0% | |
| TGTCCCACCACCTGGAATCA+TGG | - | chr2_4:3745795-3745814 | Msa0309260:CDS | 55.0% | |
| GTCCCACCACCTGGAATCAT+GGG | - | chr2_4:3745796-3745815 | Msa0309260:CDS | 55.0% | |
| CTCCCATGATTCCAGGTGGT+GGG | + | chr2_4:3745801-3745820 | None:intergenic | 55.0% | |
| TCTCCTCCCATGATTCCAGG+TGG | + | chr2_4:3745805-3745824 | None:intergenic | 55.0% | |
| GGATCTCCTCCCATGATTCC+AGG | + | chr2_4:3745808-3745827 | None:intergenic | 55.0% | |
| CGACGTCGTTACATCAGCCG+CGG | - | chr2_4:3744883-3744902 | Msa0309260:CDS | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_4:3745780-3745799 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_4:3745788-3745807 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_4:3745787-3745806 | Msa0309260:CDS | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_4:3745802-3745821 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_4:3745799-3745818 | Msa0309260:CDS | 60.0% | |
| CGACGTCGTTACATCAGCCG+CGG | - | chr2_4:3744883-3744902 | Msa0309260:CDS | 60.0% | |
| GGACAGAACCTGAGGCAGCA+GGG | + | chr2_4:3745780-3745799 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGGACAGAACCTG+AGG | + | chr2_4:3745788-3745807 | None:intergenic | 60.0% |
| TCAGGTTCTGTCCCACCACC+TGG | - | chr2_4:3745787-3745806 | Msa0309260:CDS | 60.0% | |
| CCTCCCATGATTCCAGGTGG+TGG | + | chr2_4:3745802-3745821 | None:intergenic | 60.0% | |
| CCACCACCTGGAATCATGGG+AGG | - | chr2_4:3745799-3745818 | Msa0309260:CDS | 60.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_4:3744903-3744922 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_4:3745769-3745788 | Msa0309260:CDS | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_4:3745781-3745800 | None:intergenic | 65.0% | |
| CAGATGGACGAGCTCGTCCG+CGG | + | chr2_4:3744903-3744922 | None:intergenic | 65.0% | |
| CGAGATGTCCCTGCTGCCTC+AGG | - | chr2_4:3745769-3745788 | Msa0309260:CDS | 65.0% | |
| GGGACAGAACCTGAGGCAGC+AGG | + | chr2_4:3745781-3745800 | None:intergenic | 65.0% | |
| CGACGTCGTCCCACGCCCAA+TGG | + | chr2_4:3744871-3744890 | None:intergenic | 70.0% | |
| CGACGTCGTCCCACGCCCAA+TGG | + | chr2_4:3744871-3744890 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3744823 | 3745846 | 3744823 | ID=Msa0309260;Name=Msa0309260 |
| chr2_4 | mRNA | 3744823 | 3745846 | 3744823 | ID=Msa0309260-mRNA-1;Parent=Msa0309260;Name=Msa0309260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|0.5|2|0|101 |
| chr2_4 | exon | 3745667 | 3745846 | 3745667 | ID=Msa0309260-mRNA-1:exon:1237;Parent=Msa0309260-mRNA-1 |
| chr2_4 | exon | 3744823 | 3744948 | 3744823 | ID=Msa0309260-mRNA-1:exon:1236;Parent=Msa0309260-mRNA-1 |
| chr2_4 | CDS | 3745667 | 3745846 | 3745667 | ID=Msa0309260-mRNA-1:cds;Parent=Msa0309260-mRNA-1 |
| chr2_4 | CDS | 3744823 | 3744948 | 3744823 | ID=Msa0309260-mRNA-1:cds;Parent=Msa0309260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
