Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309870 | XP_003593111.1 | 99.532 | 427 | 2 | 0 | 1 | 427 | 1 | 427 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309870 | sp|Q75HX5|TLP8_ORYSJ | 76.286 | 447 | 84 | 11 | 1 | 427 | 1 | 445 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0309870 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309870 | MtrunA17_Chr2g0278511 | 99.532 | 427 | 2 | 0 | 1 | 427 | 1 | 427 | 0.0 | 885 |
| Msa0309870 | MtrunA17_Chr1g0201891 | 80.000 | 435 | 75 | 5 | 1 | 427 | 1 | 431 | 0.0 | 690 |
| Msa0309870 | MtrunA17_Chr5g0404321 | 55.300 | 434 | 169 | 12 | 1 | 427 | 1 | 416 | 5.04e-156 | 447 |
| Msa0309870 | MtrunA17_Chr2g0286441 | 58.005 | 381 | 137 | 6 | 49 | 427 | 34 | 393 | 1.79e-154 | 442 |
| Msa0309870 | MtrunA17_Chr1g0196071 | 53.241 | 432 | 167 | 10 | 1 | 427 | 1 | 402 | 5.30e-154 | 441 |
| Msa0309870 | MtrunA17_Chr8g0373001 | 52.558 | 430 | 183 | 8 | 1 | 427 | 1 | 412 | 2.04e-148 | 427 |
| Msa0309870 | MtrunA17_Chr1g0155301 | 49.777 | 448 | 178 | 9 | 1 | 427 | 1 | 422 | 1.42e-141 | 410 |
| Msa0309870 | MtrunA17_Chr2g0315641 | 48.404 | 376 | 146 | 9 | 54 | 427 | 42 | 371 | 5.34e-116 | 343 |
| Msa0309870 | MtrunA17_Chr2g0315651 | 42.895 | 380 | 162 | 12 | 54 | 427 | 37 | 367 | 1.14e-92 | 284 |
| Msa0309870 | MtrunA17_Chr8g0373361 | 42.558 | 430 | 190 | 15 | 15 | 420 | 9 | 405 | 1.52e-91 | 282 |
| Msa0309870 | MtrunA17_Chr8g0373331 | 36.215 | 428 | 185 | 13 | 1 | 420 | 1 | 348 | 3.86e-74 | 236 |
| Msa0309870 | MtrunA17_Chr1g0156151 | 46.479 | 213 | 102 | 5 | 1 | 207 | 1 | 207 | 5.75e-53 | 176 |
| Msa0309870 | MtrunA17_Chr8g0373351 | 33.420 | 386 | 129 | 11 | 49 | 419 | 14 | 286 | 7.17e-49 | 168 |
| Msa0309870 | MtrunA17_Chr8g0373341 | 38.767 | 227 | 89 | 7 | 1 | 207 | 1 | 197 | 9.43e-30 | 117 |
| Msa0309870 | MtrunA17_Chr8g0373341 | 45.455 | 99 | 47 | 2 | 320 | 417 | 228 | 320 | 8.58e-17 | 80.9 |
| Msa0309870 | MtrunA17_Chr3g0091401 | 40.404 | 99 | 52 | 2 | 96 | 194 | 8 | 99 | 4.25e-15 | 70.9 |
| Msa0309870 | MtrunA17_Chr2g0334041 | 40.909 | 110 | 44 | 5 | 323 | 426 | 265 | 359 | 4.48e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309870 | AT1G25280.1 | 72.931 | 447 | 99 | 11 | 1 | 427 | 1 | 445 | 0.0 | 610 |
| Msa0309870 | AT1G76900.2 | 70.282 | 461 | 97 | 10 | 1 | 427 | 1 | 455 | 0.0 | 608 |
| Msa0309870 | AT1G76900.1 | 70.282 | 461 | 97 | 10 | 1 | 427 | 1 | 455 | 0.0 | 608 |
| Msa0309870 | AT1G76900.3 | 70.282 | 461 | 97 | 10 | 1 | 427 | 1 | 455 | 0.0 | 608 |
| Msa0309870 | AT1G43640.1 | 68.552 | 442 | 111 | 7 | 1 | 427 | 1 | 429 | 0.0 | 605 |
| Msa0309870 | AT1G43640.2 | 70.400 | 375 | 86 | 5 | 66 | 427 | 1 | 363 | 0.0 | 535 |
| Msa0309870 | AT2G47900.2 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 4.30e-167 | 475 |
| Msa0309870 | AT2G47900.1 | 55.093 | 432 | 163 | 7 | 1 | 427 | 1 | 406 | 4.30e-167 | 475 |
| Msa0309870 | AT2G47900.3 | 54.965 | 433 | 163 | 8 | 1 | 427 | 1 | 407 | 1.39e-165 | 471 |
| Msa0309870 | AT2G18280.2 | 52.765 | 434 | 157 | 9 | 1 | 427 | 1 | 393 | 5.49e-146 | 421 |
| Msa0309870 | AT2G18280.1 | 52.765 | 434 | 157 | 9 | 1 | 427 | 1 | 393 | 5.49e-146 | 421 |
| Msa0309870 | AT1G47270.3 | 50.230 | 434 | 163 | 8 | 1 | 427 | 1 | 388 | 1.46e-139 | 404 |
| Msa0309870 | AT1G47270.1 | 50.230 | 434 | 163 | 8 | 1 | 427 | 26 | 413 | 1.81e-139 | 405 |
| Msa0309870 | AT1G47270.2 | 50.230 | 434 | 163 | 8 | 1 | 427 | 25 | 412 | 2.73e-139 | 405 |
| Msa0309870 | AT3G06380.1 | 51.979 | 379 | 146 | 8 | 54 | 427 | 33 | 380 | 3.73e-128 | 375 |
| Msa0309870 | AT5G18680.1 | 49.392 | 411 | 161 | 12 | 32 | 427 | 11 | 389 | 9.35e-126 | 369 |
| Msa0309870 | AT1G25280.3 | 72.285 | 267 | 61 | 8 | 174 | 427 | 1 | 267 | 3.05e-123 | 358 |
| Msa0309870 | AT1G25280.2 | 72.285 | 267 | 61 | 8 | 174 | 427 | 1 | 267 | 3.05e-123 | 358 |
| Msa0309870 | AT1G53320.1 | 48.031 | 381 | 152 | 8 | 51 | 427 | 41 | 379 | 4.43e-115 | 342 |
| Msa0309870 | AT5G18680.2 | 52.012 | 323 | 115 | 10 | 113 | 427 | 7 | 297 | 3.60e-101 | 303 |
| Msa0309870 | AT3G06380.2 | 51.111 | 315 | 119 | 7 | 117 | 427 | 5 | 288 | 8.07e-100 | 300 |
| Msa0309870 | AT1G61940.2 | 56.977 | 86 | 37 | 0 | 57 | 142 | 1 | 86 | 1.02e-30 | 119 |
| Msa0309870 | AT1G61940.1 | 60.656 | 61 | 24 | 0 | 57 | 117 | 1 | 61 | 3.22e-19 | 87.0 |
Find 135 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTAGATCTATTTATTC+TGG | 0.101270 | 2_4:-4656832 | Msa0309870:five_prime_UTR |
| GTTTGATTAGTTCACTTTAA+AGG | 0.174467 | 2_4:+4653484 | None:intergenic |
| GTGATCTAGCTTAGGAGTTT+TGG | 0.235422 | 2_4:-4656626 | Msa0309870:five_prime_UTR |
| TACACCAGATCAAACTTTCT+TGG | 0.237446 | 2_4:-4654228 | Msa0309870:intron |
| GCAGCTTTGTTGGTTGAAAA+TGG | 0.267345 | 2_4:-4654819 | Msa0309870:intron |
| CGTGACGTTCGTGATAGTTT+TGG | 0.276663 | 2_4:-4655942 | Msa0309870:CDS |
| ACACAGCCTCCCTGCACTTC+TGG | 0.283477 | 2_4:-4654183 | Msa0309870:CDS |
| GTGCTTCTGTTTGCCAGTCT+TGG | 0.312781 | 2_4:-4655710 | Msa0309870:CDS |
| CCGGCATCAAGTGCTGAATT+TGG | 0.312965 | 2_4:+4653997 | None:intergenic |
| ATTTGCAACCAACCTGCTTC+AGG | 0.316319 | 2_4:+4655622 | None:intergenic |
| GCTTCCACCCAACCACCTGC+TGG | 0.321946 | 2_4:-4653700 | Msa0309870:CDS |
| ATGACATCAAATAGTAATTC+CGG | 0.334292 | 2_4:+4655789 | None:intergenic |
| GATGCCGGCGGCTCCGTTCC+TGG | 0.334908 | 2_4:-4653982 | Msa0309870:CDS |
| GCCGTCATCATCCTCATTAC+AGG | 0.338459 | 2_4:+4653843 | None:intergenic |
| ACAAAAGAGATACTTATTCT+TGG | 0.352074 | 2_4:-4656000 | Msa0309870:five_prime_UTR |
| CAGTCCCTGGAGGACATATA+TGG | 0.390190 | 2_4:+4654160 | None:intergenic |
| CAAAAGAGATACTTATTCTT+GGG | 0.392034 | 2_4:-4655999 | Msa0309870:five_prime_UTR |
| ACATATATGGCCAGAAGTGC+AGG | 0.394714 | 2_4:+4654173 | None:intergenic |
| TTCTGCAATTCGGCAAAGTT+GGG | 0.396243 | 2_4:-4653630 | Msa0309870:CDS |
| AAAGCTTGGAATGCAGATAA+AGG | 0.399095 | 2_4:+4653577 | None:intergenic |
| TTACTCGTCCCCGAAAATTA+AGG | 0.402869 | 2_4:+4653755 | None:intergenic |
| TCTCTAGATCTATTTATTCT+GGG | 0.406157 | 2_4:-4656831 | Msa0309870:intron |
| CTTCCACCCAACCACCTGCT+GGG | 0.409907 | 2_4:-4653699 | Msa0309870:CDS |
| AGAGAGTGAGAGAGAGATGA+TGG | 0.410561 | 2_4:-4656962 | Msa0309870:five_prime_UTR |
| CACTGAGTATGTTATTTCAA+TGG | 0.410829 | 2_4:-4654754 | Msa0309870:CDS |
| CATATATGTCCTCCAGGGAC+TGG | 0.412842 | 2_4:-4654159 | Msa0309870:CDS |
| AGCAGAATGATAAAAGCTTT+AGG | 0.419630 | 2_4:+4656904 | None:intergenic |
| TCGGCGCCCCAGCAGGTGGT+TGG | 0.419959 | 2_4:+4653692 | None:intergenic |
| CTTCTGTTTGCCAGTCTTGG+AGG | 0.420970 | 2_4:-4655707 | Msa0309870:CDS |
| AATTACTATTTGATGTCATT+CGG | 0.424860 | 2_4:-4655785 | Msa0309870:CDS |
| GCAACTACATGCTTTCTTGA+AGG | 0.425706 | 2_4:+4655735 | None:intergenic |
| AAAGTGAACTAATCAAACTT+TGG | 0.428598 | 2_4:-4653479 | Msa0309870:three_prime_UTR |
| TGTAATTGTTCATGCCATCT+TGG | 0.429018 | 2_4:+4653787 | None:intergenic |
| CTCAGTGTAGGTTGTTCTCC+TGG | 0.432833 | 2_4:+4654770 | None:intergenic |
| TTGTAATTCAAAATAGCTGC+TGG | 0.434645 | 2_4:-4655824 | Msa0309870:CDS |
| TAACTCCCAGATGGGACCTT+TGG | 0.438868 | 2_4:+4654102 | None:intergenic |
| GTATCGCCAAAGGTCCCATC+TGG | 0.445185 | 2_4:-4654108 | Msa0309870:CDS |
| GATGGTGTCGGCGCCCCAGC+AGG | 0.447033 | 2_4:+4653685 | None:intergenic |
| GATAAGATTATTCTGCAATT+CGG | 0.448717 | 2_4:-4653640 | Msa0309870:CDS |
| CGGCGCCCCAGCAGGTGGTT+GGG | 0.449066 | 2_4:+4653693 | None:intergenic |
| ATTCTGCAATTCGGCAAAGT+TGG | 0.451251 | 2_4:-4653631 | Msa0309870:CDS |
| AATTCCTCCTTTCTGCTAAG+AGG | 0.453202 | 2_4:-4654794 | Msa0309870:CDS |
| GTTCCCTGTGTCCCTGAAGC+AGG | 0.461781 | 2_4:-4655634 | Msa0309870:intron |
| TAATGCAATGCATCTTCCTT+GGG | 0.462060 | 2_4:+4654031 | None:intergenic |
| AGAATAATCTTATCATGTTC+CGG | 0.463219 | 2_4:+4653649 | None:intergenic |
| CGGCTCGTCTTCCCAGTCCC+TGG | 0.463239 | 2_4:+4654147 | None:intergenic |
| TGACATCAAATAGTAATTCC+GGG | 0.465027 | 2_4:+4655790 | None:intergenic |
| CAGGGCTCAGACAAAGGAAT+AGG | 0.465192 | 2_4:+4655414 | None:intergenic |
| AATTGTTCATGCCATCTTGG+AGG | 0.466985 | 2_4:+4653790 | None:intergenic |
| TCTGGCCATATATGTCCTCC+AGG | 0.467385 | 2_4:-4654165 | Msa0309870:CDS |
| TGAATTAGCTCTGGCTGTCC+AGG | 0.469795 | 2_4:+4653964 | None:intergenic |
| TATGCTACGGAAAGACATTC+CGG | 0.472706 | 2_4:+4655968 | None:intergenic |
| TGACGGCAAGATGAGACCTT+TGG | 0.479423 | 2_4:-4653827 | Msa0309870:CDS |
| CTGCTGGGCGAACTTGCCCC+CGG | 0.484008 | 2_4:-4655808 | Msa0309870:CDS |
| GGTGCTTTGTGATCTAGCTT+AGG | 0.486239 | 2_4:-4656634 | Msa0309870:five_prime_UTR |
| CTATTCCTTTGTCTGAGCCC+TGG | 0.486417 | 2_4:-4655413 | Msa0309870:intron |
| GTAAGTTTGCCACAGAACTC+TGG | 0.486827 | 2_4:+4655657 | None:intergenic |
| TCCTTTCTGCTAAGAGGACC+AGG | 0.487862 | 2_4:-4654788 | Msa0309870:CDS |
| GTTCCCTAGAGGACTCATTC+CGG | 0.488569 | 2_4:-4653939 | Msa0309870:CDS |
| ATAATGCAATGCATCTTCCT+TGG | 0.491165 | 2_4:+4654030 | None:intergenic |
| AAACTATTCACAAGCCAACT+TGG | 0.491824 | 2_4:+4653528 | None:intergenic |
| TTATTCTTGGGATTCTACTC+CGG | 0.494237 | 2_4:-4655987 | Msa0309870:five_prime_UTR |
| TTATCATGTTCCGGTGGTGC+TGG | 0.495403 | 2_4:+4653658 | None:intergenic |
| TTAAGCATATTGCAAAAGCT+TGG | 0.496726 | 2_4:+4653563 | None:intergenic |
| ATGATTCCGTCTCGTGGCCC+TGG | 0.498403 | 2_4:+4655479 | None:intergenic |
| AAGCAACCAGTACAAGCATA+TGG | 0.500780 | 2_4:+4656041 | None:intergenic |
| TTTGCAACCAACCTGCTTCA+GGG | 0.503932 | 2_4:+4655623 | None:intergenic |
| TCTCAGCTTCATACAATACA+AGG | 0.503978 | 2_4:-4656858 | Msa0309870:five_prime_UTR |
| ATATATGTCCTCCAGGGACT+GGG | 0.505737 | 2_4:-4654158 | Msa0309870:CDS |
| AAAGTCTCATGGTTCTGTAC+AGG | 0.510601 | 2_4:-4655865 | Msa0309870:CDS |
| ACTTCGAAAATGAGATGCTC+CGG | 0.512791 | 2_4:+4653920 | None:intergenic |
| TGCTCCGGAATGAGTCCTCT+AGG | 0.516799 | 2_4:+4653935 | None:intergenic |
| TGGCAGCCATATGCTTGTAC+TGG | 0.521805 | 2_4:-4656047 | Msa0309870:intron |
| ACCATCTCAACCAGCACCAC+CGG | 0.524305 | 2_4:-4653668 | Msa0309870:CDS |
| CGCCCCAGCAGGTGGTTGGG+TGG | 0.525317 | 2_4:+4653696 | None:intergenic |
| AGGGAACGGTGAATTAGCTC+TGG | 0.526856 | 2_4:+4653955 | None:intergenic |
| CTGTCCAGGAACGGAGCCGC+CGG | 0.530915 | 2_4:+4653978 | None:intergenic |
| GAGACTTTCCTCTATGATGA+TGG | 0.534079 | 2_4:+4655880 | None:intergenic |
| TGCACATATTCCTCCAAGAC+TGG | 0.534318 | 2_4:+4655697 | None:intergenic |
| ACTTACCAGGGCTCAGACAA+AGG | 0.539855 | 2_4:+4655408 | None:intergenic |
| TCCGGTGGTGCTGGTTGAGA+TGG | 0.545833 | 2_4:+4653667 | None:intergenic |
| CCAACCTGCTTCAGGGACAC+AGG | 0.545878 | 2_4:+4655630 | None:intergenic |
| TTCCACCCAACCACCTGCTG+GGG | 0.546085 | 2_4:-4653698 | Msa0309870:CDS |
| TCCTGGTCCTCTTAGCAGAA+AGG | 0.550764 | 2_4:+4654787 | None:intergenic |
| CCATCGAGTTCAGCAGTGCA+CGG | 0.552583 | 2_4:-4653885 | Msa0309870:CDS |
| GGTGTCGGCGCCCCAGCAGG+TGG | 0.552680 | 2_4:+4653688 | None:intergenic |
| TAAGTTTGCCACAGAACTCT+GGG | 0.552867 | 2_4:+4655658 | None:intergenic |
| AACTAATCAAACTTTGGTGA+TGG | 0.552884 | 2_4:-4653473 | Msa0309870:three_prime_UTR |
| CCAAATTCAGCACTTGATGC+CGG | 0.556877 | 2_4:-4653997 | Msa0309870:CDS |
| TAGAGGAGAGTGAGAATACA+TGG | 0.558627 | 2_4:-4655758 | Msa0309870:CDS |
| AAGCAGCTTTGACACCAAGT+TGG | 0.560190 | 2_4:-4653542 | Msa0309870:CDS |
| CCGTGCACTGCTGAACTCGA+TGG | 0.569599 | 2_4:+4653885 | None:intergenic |
| AGATCAAGTAATACTTACAT+TGG | 0.570296 | 2_4:-4654714 | Msa0309870:CDS |
| ACATATGAACTAAATGTGCT+CGG | 0.570299 | 2_4:-4654063 | Msa0309870:CDS |
| CTAAATGTGCTCGGAACTCG+AGG | 0.572448 | 2_4:-4654054 | Msa0309870:CDS |
| GAGTGAGAGAGAGATGATGG+AGG | 0.581999 | 2_4:-4656959 | Msa0309870:five_prime_UTR |
| TGGGAGTTACAACATAGCTC+AGG | 0.584581 | 2_4:-4654088 | Msa0309870:CDS |
| CTTACTGGCCATCATCATAG+AGG | 0.586395 | 2_4:-4655888 | Msa0309870:CDS |
| GGCATGAACAATTACAGTGC+TGG | 0.588906 | 2_4:-4653780 | Msa0309870:CDS |
| TGATGTCATTCGGCGACTAG+AGG | 0.590244 | 2_4:-4655775 | Msa0309870:CDS |
| CATCATAGAGGAAAGTCTCA+TGG | 0.596493 | 2_4:-4655876 | Msa0309870:CDS |
| GGCTCAGACAAAGGAATAGG+TGG | 0.596757 | 2_4:+4655417 | None:intergenic |
| TGAAATAACATACTCAGTGT+AGG | 0.597863 | 2_4:+4654758 | None:intergenic |
| TTTAATCATGAAGCAAAGAG+AGG | 0.598801 | 2_4:-4653507 | Msa0309870:three_prime_UTR |
| TAAAGGATATCGATAATCCA+TGG | 0.599763 | 2_4:+4653594 | None:intergenic |
| GCTCCGGAATGAGTCCTCTA+GGG | 0.602403 | 2_4:+4653936 | None:intergenic |
| CAACCTGCTTCAGGGACACA+GGG | 0.603326 | 2_4:+4655631 | None:intergenic |
| GCTATGTTGTAACTCCCAGA+TGG | 0.603839 | 2_4:+4654093 | None:intergenic |
| TGTAATTCAAAATAGCTGCT+GGG | 0.606882 | 2_4:-4655823 | Msa0309870:CDS |
| CATTGAATGATTCCGTCTCG+TGG | 0.607917 | 2_4:+4655473 | None:intergenic |
| TAGCTCTGGCTGTCCAGGAA+CGG | 0.608796 | 2_4:+4653969 | None:intergenic |
| CTATGTTGTAACTCCCAGAT+GGG | 0.609999 | 2_4:+4654094 | None:intergenic |
| TGCTCGGAACTCGAGGCCCA+AGG | 0.612968 | 2_4:-4654047 | Msa0309870:CDS |
| TATCGCCAAAGGTCCCATCT+GGG | 0.614613 | 2_4:-4654107 | Msa0309870:CDS |
| GACATCAAATAGTAATTCCG+GGG | 0.619654 | 2_4:+4655791 | None:intergenic |
| TTTCAGCCAGGGCCACGAGA+CGG | 0.619741 | 2_4:-4655485 | Msa0309870:intron |
| GAACGTCACGAACTATGCTA+CGG | 0.624312 | 2_4:+4655955 | None:intergenic |
| TCCTGTAATGAGGATGATGA+CGG | 0.629322 | 2_4:-4653844 | Msa0309870:CDS |
| CTCGTCTTCCCAGTCCCTGG+AGG | 0.630641 | 2_4:+4654150 | None:intergenic |
| CATATATGGCCAGAAGTGCA+GGG | 0.636883 | 2_4:+4654174 | None:intergenic |
| GTCTTGGAGGAATATGTGCA+AGG | 0.636885 | 2_4:-4655694 | Msa0309870:CDS |
| TGGGAAAGATATGTTCACCA+TGG | 0.642687 | 2_4:-4653611 | Msa0309870:CDS |
| GGAATGAGTCCTCTAGGGAA+CGG | 0.643745 | 2_4:+4653941 | None:intergenic |
| GGTGCTGGTTGAGATGGTGT+CGG | 0.645312 | 2_4:+4653673 | None:intergenic |
| TGGTCCTCTTAGCAGAAAGG+AGG | 0.662850 | 2_4:+4654790 | None:intergenic |
| GCTAATTCACCGTTCCCTAG+AGG | 0.664796 | 2_4:-4653950 | Msa0309870:CDS |
| ATACTTACATTGGAAAACTG+AGG | 0.671640 | 2_4:-4654704 | Msa0309870:intron |
| GTTAAGAGCCCAGAGTTCTG+TGG | 0.672556 | 2_4:-4655666 | Msa0309870:CDS |
| CTCAGCTTCATACAATACAA+GGG | 0.675039 | 2_4:-4656857 | Msa0309870:five_prime_UTR |
| AATTCAGCACTTGATGCCGG+CGG | 0.675089 | 2_4:-4653994 | Msa0309870:CDS |
| CTGGCCATATATGTCCTCCA+GGG | 0.676408 | 2_4:-4654164 | Msa0309870:CDS |
| ATAATCTTATCATGTTCCGG+TGG | 0.692992 | 2_4:+4653652 | None:intergenic |
| AGACAGATAGATATAAAACA+AGG | 0.694039 | 2_4:+4653441 | None:intergenic |
| ACATCAAATAGTAATTCCGG+GGG | 0.704639 | 2_4:+4655792 | None:intergenic |
| ATATGGCCAGAAGTGCAGGG+AGG | 0.788147 | 2_4:+4654177 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr2_4:4653942-4653961 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | - | chr2_4:4653942-4653961 | Msa0309870:CDS | 0.0% |
| !!! | AATCTTAATTAGATTTTATA+TGG | + | chr2_4:4654062-4654081 | None:intergenic | 10.0% |
| !! | AATAATAATAACTTTGGATT+TGG | + | chr2_4:4653611-4653630 | None:intergenic | 15.0% |
| !!! | ATTAGATTTTATATGGTTTA+TGG | + | chr2_4:4654055-4654074 | None:intergenic | 15.0% |
| !! | TCATTATTATTTCAACATAA+AGG | + | chr2_4:4654861-4654880 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAAATTGAAAC+AGG | + | chr2_4:4655558-4655577 | None:intergenic | 15.0% |
| !! | AATAATTTATTTGCCTTGTA+AGG | - | chr2_4:4654025-4654044 | Msa0309870:CDS | 20.0% |
| !!! | TATTTTTTGCATTTGATTCA+TGG | - | chr2_4:4654178-4654197 | Msa0309870:CDS | 20.0% |
| !! | GTGTGTAAATATTGAAATAT+CGG | - | chr2_4:4654222-4654241 | Msa0309870:CDS | 20.0% |
| !!! | TTAGTTTTTGGATAGTATTT+TGG | - | chr2_4:4654264-4654283 | Msa0309870:intron | 20.0% |
| !! | AATTACTATTTGATGTCATT+CGG | - | chr2_4:4654619-4654638 | Msa0309870:intron | 20.0% |
| !! | TTTCAAAATTCAAACAGTTT+AGG | - | chr2_4:4655112-4655131 | Msa0309870:intron | 20.0% |
| !! | TTTCTGTAACATTTCTATAA+TGG | - | chr2_4:4655289-4655308 | Msa0309870:intron | 20.0% |
| !! | GAAGTAAATAAAATTGAAAC+AGG | + | chr2_4:4655518-4655537 | None:intergenic | 20.0% |
| !!! | CTATGTTAAAAACTTCTTTT+AGG | - | chr2_4:4655763-4655782 | Msa0309870:CDS | 20.0% |
| !! | CATAAGTGGAAAATTATTTA+TGG | + | chr2_4:4656039-4656058 | None:intergenic | 20.0% |
| !!! | ATACCTTTTTAGAAAATCTA+CGG | + | chr2_4:4656280-4656299 | None:intergenic | 20.0% |
| ! | TTCTCTAGATCTATTTATTC+TGG | - | chr2_4:4653572-4653591 | Msa0309870:CDS | 25.0% |
| ! | TCTCTAGATCTATTTATTCT+GGG | - | chr2_4:4653573-4653592 | Msa0309870:CDS | 25.0% |
| !! | TATTTGTGTTTTGCAGATAA+AGG | - | chr2_4:4653748-4653767 | Msa0309870:CDS | 25.0% |
| !! | ATTTGTGTTTTGCAGATAAA+GGG | - | chr2_4:4653749-4653768 | Msa0309870:CDS | 25.0% |
| !!! | ATTAACTAGCAAGTTTTATG+AGG | - | chr2_4:4653810-4653829 | Msa0309870:CDS | 25.0% |
| ! | GTAAGATAAGCATAATGTAA+GGG | + | chr2_4:4653854-4653873 | None:intergenic | 25.0% |
| ! | TGTAAGATAAGCATAATGTA+AGG | + | chr2_4:4653855-4653874 | None:intergenic | 25.0% |
| ! | AAAAGGTTGCATATATCAAA+GGG | + | chr2_4:4653926-4653945 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGCATATATCAA+AGG | + | chr2_4:4653927-4653946 | None:intergenic | 25.0% |
| ! | AACTAAAGTTGCATATATCA+AGG | + | chr2_4:4653970-4653989 | None:intergenic | 25.0% |
| ! | TTGATATATGCAACTTTAGT+TGG | - | chr2_4:4653969-4653988 | Msa0309870:CDS | 25.0% |
| !!! | TTTTTGGATAGTATTTTGGT+AGG | - | chr2_4:4654268-4654287 | Msa0309870:intron | 25.0% |
| ! | ACAAAAGAGATACTTATTCT+TGG | - | chr2_4:4654404-4654423 | Msa0309870:intron | 25.0% |
| ! | CAAAAGAGATACTTATTCTT+GGG | - | chr2_4:4654405-4654424 | Msa0309870:intron | 25.0% |
| ! | ATGACATCAAATAGTAATTC+CGG | + | chr2_4:4654618-4654637 | None:intergenic | 25.0% |
| !!! | GTTTAGGTTTTTTAAGTTAC+TGG | - | chr2_4:4655128-4655147 | Msa0309870:intron | 25.0% |
| ! | ATGAATATTTGTGCATATGT+TGG | - | chr2_4:4655155-4655174 | Msa0309870:intron | 25.0% |
| ! | CAAAAGGAAATAAATCTTCA+CGG | + | chr2_4:4655323-4655342 | None:intergenic | 25.0% |
| ! | AGATCAAGTAATACTTACAT+TGG | - | chr2_4:4655690-4655709 | Msa0309870:CDS | 25.0% |
| ! | TTCTACTGTTAAAACTACTA+TGG | - | chr2_4:4655798-4655817 | Msa0309870:CDS | 25.0% |
| !!! | TTAGAATGCATTTTGATAGT+TGG | + | chr2_4:4655833-4655852 | None:intergenic | 25.0% |
| ! | ATGTTATTATCACTTATCAG+AGG | - | chr2_4:4655988-4656007 | Msa0309870:five_prime_UTR | 25.0% |
| ! | TCAGAGGTAATAAATAATCT+AGG | - | chr2_4:4656004-4656023 | Msa0309870:five_prime_UTR | 25.0% |
| ! | AGAATAATCTTATCATGTTC+CGG | + | chr2_4:4656758-4656777 | None:intergenic | 25.0% |
| ! | GATAAGATTATTCTGCAATT+CGG | - | chr2_4:4656764-4656783 | Msa0309870:intron | 25.0% |
| !! | GTTTGATTAGTTCACTTTAA+AGG | + | chr2_4:4656923-4656942 | None:intergenic | 25.0% |
| ! | AAAGTGAACTAATCAAACTT+TGG | - | chr2_4:4656925-4656944 | Msa0309870:five_prime_UTR | 25.0% |
| ! | AGACAGATAGATATAAAACA+AGG | + | chr2_4:4656966-4656985 | None:intergenic | 25.0% |
| AGCAGAATGATAAAAGCTTT+AGG | + | chr2_4:4653503-4653522 | None:intergenic | 30.0% | |
| !!! | CTGATTTGGATCTTAGTTTT+TGG | - | chr2_4:4654252-4654271 | Msa0309870:intron | 30.0% |
| !! | AGTTTTGATGTCAAACTTAC+TGG | - | chr2_4:4654501-4654520 | Msa0309870:intron | 30.0% |
| !! | CAGCTATTTTGAATTACAAG+AGG | + | chr2_4:4654579-4654598 | None:intergenic | 30.0% |
| TTGTAATTCAAAATAGCTGC+TGG | - | chr2_4:4654580-4654599 | Msa0309870:intron | 30.0% | |
| TGTAATTCAAAATAGCTGCT+GGG | - | chr2_4:4654581-4654600 | Msa0309870:intron | 30.0% | |
| TGACATCAAATAGTAATTCC+GGG | + | chr2_4:4654617-4654636 | None:intergenic | 30.0% | |
| ! | TAAAAGCATATAAACCCACT+AGG | + | chr2_4:4655044-4655063 | None:intergenic | 30.0% |
| ! | AATGTCTGATTTTTACGCAT+TGG | + | chr2_4:4655271-4655290 | None:intergenic | 30.0% |
| !! | TTCCTTTTGTGATTGATTCT+AGG | - | chr2_4:4655334-4655353 | Msa0309870:intron | 30.0% |
| !!! | ACTTCTAAAGTTTTGATGCT+AGG | - | chr2_4:4655452-4655471 | Msa0309870:CDS | 30.0% |
| !!! | CTTCTAAAGTTTTGATGCTA+GGG | - | chr2_4:4655453-4655472 | Msa0309870:CDS | 30.0% |
| TGAAATAACATACTCAGTGT+AGG | + | chr2_4:4655649-4655668 | None:intergenic | 30.0% | |
| !! | CACTGAGTATGTTATTTCAA+TGG | - | chr2_4:4655650-4655669 | Msa0309870:CDS | 30.0% |
| ATACTTACATTGGAAAACTG+AGG | - | chr2_4:4655700-4655719 | Msa0309870:CDS | 30.0% | |
| TTAACATAGTAGATGAGAGA+AGG | + | chr2_4:4655752-4655771 | None:intergenic | 30.0% | |
| CTGAAATTCATTGCAACTTT+AGG | + | chr2_4:4655889-4655908 | None:intergenic | 30.0% | |
| AAGTTGCAATGAATTTCAGT+TGG | - | chr2_4:4655890-4655909 | Msa0309870:CDS | 30.0% | |
| GAAGATATGAATAGCAAACA+AGG | + | chr2_4:4656075-4656094 | None:intergenic | 30.0% | |
| ATATCTTCAAGACCATTTAC+TGG | - | chr2_4:4656087-4656106 | Msa0309870:intron | 30.0% | |
| TATCTTCAAGACCATTTACT+GGG | - | chr2_4:4656088-4656107 | Msa0309870:intron | 30.0% | |
| AACAGAAAAAACCCAGTAAA+TGG | + | chr2_4:4656102-4656121 | None:intergenic | 30.0% | |
| ACATATGAACTAAATGTGCT+CGG | - | chr2_4:4656341-4656360 | Msa0309870:intron | 30.0% | |
| TAAAGGATATCGATAATCCA+TGG | + | chr2_4:4656813-4656832 | None:intergenic | 30.0% | |
| TTAAGCATATTGCAAAAGCT+TGG | + | chr2_4:4656844-4656863 | None:intergenic | 30.0% | |
| TTTAATCATGAAGCAAAGAG+AGG | - | chr2_4:4656897-4656916 | Msa0309870:five_prime_UTR | 30.0% | |
| AACTAATCAAACTTTGGTGA+TGG | - | chr2_4:4656931-4656950 | Msa0309870:five_prime_UTR | 30.0% | |
| TCTCAGCTTCATACAATACA+AGG | - | chr2_4:4653546-4653565 | Msa0309870:CDS | 35.0% | |
| CTCAGCTTCATACAATACAA+GGG | - | chr2_4:4653547-4653566 | Msa0309870:CDS | 35.0% | |
| ! | TTCTTCAAATCTGAAGCCTT+TGG | - | chr2_4:4653667-4653686 | Msa0309870:CDS | 35.0% |
| CTTACATGTGTTAACGATGA+TGG | - | chr2_4:4653869-4653888 | Msa0309870:CDS | 35.0% | |
| !! | ATTGTTTTGCTTCTGCTTAG+GGG | + | chr2_4:4654114-4654133 | None:intergenic | 35.0% |
| !! | CATTGTTTTGCTTCTGCTTA+GGG | + | chr2_4:4654115-4654134 | None:intergenic | 35.0% |
| ATATCGGAAGCTTTCTGATT+TGG | - | chr2_4:4654238-4654257 | Msa0309870:intron | 35.0% | |
| GAACTGATACTCTTCTTTGA+TGG | - | chr2_4:4654337-4654356 | Msa0309870:intron | 35.0% | |
| ! | TCTCTTTTGTGAACTTCTGA+TGG | + | chr2_4:4654394-4654413 | None:intergenic | 35.0% |
| TTATTCTTGGGATTCTACTC+CGG | - | chr2_4:4654417-4654436 | Msa0309870:intron | 35.0% | |
| !!! | ATAGTTTTGGGAGCTTATCT+AGG | - | chr2_4:4654475-4654494 | Msa0309870:intron | 35.0% |
| ACATCAAATAGTAATTCCGG+GGG | + | chr2_4:4654615-4654634 | None:intergenic | 35.0% | |
| GACATCAAATAGTAATTCCG+GGG | + | chr2_4:4654616-4654635 | None:intergenic | 35.0% | |
| TATAAACCCACTAGGTAACT+AGG | + | chr2_4:4655036-4655055 | None:intergenic | 35.0% | |
| ! | ATTTGTGCATATGTTGGTTG+TGG | - | chr2_4:4655161-4655180 | Msa0309870:intron | 35.0% |
| CTCCTAGAATCAATCACAAA+AGG | + | chr2_4:4655339-4655358 | None:intergenic | 35.0% | |
| TGTTTGATGTCCATTACATC+AGG | - | chr2_4:4655373-4655392 | Msa0309870:intron | 35.0% | |
| GTTTGATGTCCATTACATCA+GGG | - | chr2_4:4655374-4655393 | Msa0309870:intron | 35.0% | |
| TTTGATGTCCATTACATCAG+GGG | - | chr2_4:4655375-4655394 | Msa0309870:intron | 35.0% | |
| !! | TTTGACTTTTGCAGCTTTGT+TGG | - | chr2_4:4655575-4655594 | Msa0309870:intron | 35.0% |
| !!! | GATTCTGCTGTTTTACTTCT+GGG | + | chr2_4:4655858-4655877 | None:intergenic | 35.0% |
| !!! | TGATTCTGCTGTTTTACTTC+TGG | + | chr2_4:4655859-4655878 | None:intergenic | 35.0% |
| GAATATCTGCATCACATAAG+TGG | + | chr2_4:4656053-4656072 | None:intergenic | 35.0% | |
| TACACCAGATCAAACTTTCT+TGG | - | chr2_4:4656176-4656195 | Msa0309870:intron | 35.0% | |
| TGTTCCAAGAAAGTTTGATC+TGG | + | chr2_4:4656183-4656202 | None:intergenic | 35.0% | |
| !! | GAGCCGTAGATTTTCTAAAA+AGG | - | chr2_4:4656274-4656293 | Msa0309870:intron | 35.0% |
| !! | TTCTAAAAAGGTATCGCCAA+AGG | - | chr2_4:4656286-4656305 | Msa0309870:intron | 35.0% |
| TAATGCAATGCATCTTCCTT+GGG | + | chr2_4:4656376-4656395 | None:intergenic | 35.0% | |
| ATAATGCAATGCATCTTCCT+TGG | + | chr2_4:4656377-4656396 | None:intergenic | 35.0% | |
| TGTAATTGTTCATGCCATCT+TGG | + | chr2_4:4656620-4656639 | None:intergenic | 35.0% | |
| ATAATCTTATCATGTTCCGG+TGG | + | chr2_4:4656755-4656774 | None:intergenic | 35.0% | |
| AAAGCTTGGAATGCAGATAA+AGG | + | chr2_4:4656830-4656849 | None:intergenic | 35.0% | |
| AAACTATTCACAAGCCAACT+TGG | + | chr2_4:4656879-4656898 | None:intergenic | 35.0% | |
| TTAAGAACCCAGTTGACCAA+AGG | + | chr2_4:4653686-4653705 | None:intergenic | 40.0% | |
| !! | GTGATCTAGCTTAGGAGTTT+TGG | - | chr2_4:4653778-4653797 | Msa0309870:CDS | 40.0% |
| GGTTTATGGAACACCTTACA+AGG | + | chr2_4:4654041-4654060 | None:intergenic | 40.0% | |
| !! | TTGTTTTGCTTCTGCTTAGG+GGG | + | chr2_4:4654113-4654132 | None:intergenic | 40.0% |
| !! | GCATTGTTTTGCTTCTGCTT+AGG | + | chr2_4:4654116-4654135 | None:intergenic | 40.0% |
| TTTGCATTTGATTCATGGCC+AGG | - | chr2_4:4654183-4654202 | Msa0309870:CDS | 40.0% | |
| ACAATCCAGTTTATGCATCC+TGG | + | chr2_4:4654204-4654223 | None:intergenic | 40.0% | |
| AAGCAACCAGTACAAGCATA+TGG | + | chr2_4:4654366-4654385 | None:intergenic | 40.0% | |
| TATGCTACGGAAAGACATTC+CGG | + | chr2_4:4654439-4654458 | None:intergenic | 40.0% | |
| ! | GTGACGTTCGTGATAGTTTT+GGG | - | chr2_4:4654463-4654482 | Msa0309870:intron | 40.0% |
| GAGACTTTCCTCTATGATGA+TGG | + | chr2_4:4654527-4654546 | None:intergenic | 40.0% | |
| CATCATAGAGGAAAGTCTCA+TGG | - | chr2_4:4654528-4654547 | Msa0309870:intron | 40.0% | |
| ! | AAAGTCTCATGGTTCTGTAC+AGG | - | chr2_4:4654539-4654558 | Msa0309870:intron | 40.0% |
| TAGAGGAGAGTGAGAATACA+TGG | - | chr2_4:4654646-4654665 | Msa0309870:intron | 40.0% | |
| GCAACTACATGCTTTCTTGA+AGG | + | chr2_4:4654672-4654691 | None:intergenic | 40.0% | |
| TAAGTTTGCCACAGAACTCT+GGG | + | chr2_4:4654749-4654768 | None:intergenic | 40.0% | |
| !! | TTCGTTTCACTTTTCAGCCA+GGG | - | chr2_4:4654908-4654927 | Msa0309870:intron | 40.0% |
| CTTACACCTAGTTACCTAGT+GGG | - | chr2_4:4655027-4655046 | Msa0309870:intron | 40.0% | |
| ! | GCGTCAATGAAGATTTGTTC+TGG | - | chr2_4:4655202-4655221 | Msa0309870:intron | 40.0% |
| ! | GTGATTGATTCTAGGAGTCT+TGG | - | chr2_4:4655342-4655361 | Msa0309870:intron | 40.0% |
| TTGATGTCCATTACATCAGG+GGG | - | chr2_4:4655376-4655395 | Msa0309870:intron | 40.0% | |
| !! | GCAGCTTTGTTGGTTGAAAA+TGG | - | chr2_4:4655585-4655604 | Msa0309870:intron | 40.0% |
| AATTCCTCCTTTCTGCTAAG+AGG | - | chr2_4:4655610-4655629 | Msa0309870:intron | 40.0% | |
| CTATGTTGTAACTCCCAGAT+GGG | + | chr2_4:4656313-4656332 | None:intergenic | 40.0% | |
| ACTTCGAAAATGAGATGCTC+CGG | + | chr2_4:4656487-4656506 | None:intergenic | 40.0% | |
| TCCTGTAATGAGGATGATGA+CGG | - | chr2_4:4656560-4656579 | Msa0309870:intron | 40.0% | |
| !! | GGCTTGTTTTTCAGAACCAA+AGG | + | chr2_4:4656596-4656615 | None:intergenic | 40.0% |
| TGAAAAACAAGCCTCCAAGA+TGG | - | chr2_4:4656603-4656622 | Msa0309870:five_prime_UTR | 40.0% | |
| AATTGTTCATGCCATCTTGG+AGG | + | chr2_4:4656617-4656636 | None:intergenic | 40.0% | |
| !!! | AGTGCTGGTGCCTTAATTTT+CGG | - | chr2_4:4656639-4656658 | Msa0309870:five_prime_UTR | 40.0% |
| TTACTCGTCCCCGAAAATTA+AGG | + | chr2_4:4656652-4656671 | None:intergenic | 40.0% | |
| ATTCTGCAATTCGGCAAAGT+TGG | - | chr2_4:4656773-4656792 | Msa0309870:intron | 40.0% | |
| TTCTGCAATTCGGCAAAGTT+GGG | - | chr2_4:4656774-4656793 | Msa0309870:intron | 40.0% | |
| TGGGAAAGATATGTTCACCA+TGG | - | chr2_4:4656793-4656812 | Msa0309870:intron | 40.0% | |
| AGAGAGTGAGAGAGAGATGA+TGG | - | chr2_4:4653442-4653461 | Msa0309870:three_prime_UTR | 45.0% | |
| ! | ATCTGAAGCCTTTGGTCAAC+TGG | - | chr2_4:4653675-4653694 | Msa0309870:CDS | 45.0% |
| ! | TCTGAAGCCTTTGGTCAACT+GGG | - | chr2_4:4653676-4653695 | Msa0309870:CDS | 45.0% |
| ! | GGTGCTTTGTGATCTAGCTT+AGG | - | chr2_4:4653770-4653789 | Msa0309870:CDS | 45.0% |
| GAACGTCACGAACTATGCTA+CGG | + | chr2_4:4654452-4654471 | None:intergenic | 45.0% | |
| ! | CGTGACGTTCGTGATAGTTT+TGG | - | chr2_4:4654462-4654481 | Msa0309870:intron | 45.0% |
| CTTACTGGCCATCATCATAG+AGG | - | chr2_4:4654516-4654535 | Msa0309870:intron | 45.0% | |
| TGCACATATTCCTCCAAGAC+TGG | + | chr2_4:4654710-4654729 | None:intergenic | 45.0% | |
| GTCTTGGAGGAATATGTGCA+AGG | - | chr2_4:4654710-4654729 | Msa0309870:CDS | 45.0% | |
| GTAAGTTTGCCACAGAACTC+TGG | + | chr2_4:4654750-4654769 | None:intergenic | 45.0% | |
| TTTGCAACCAACCTGCTTCA+GGG | + | chr2_4:4654784-4654803 | None:intergenic | 45.0% | |
| ATTTGCAACCAACCTGCTTC+AGG | + | chr2_4:4654785-4654804 | None:intergenic | 45.0% | |
| !! | GTTCGTTTCACTTTTCAGCC+AGG | - | chr2_4:4654907-4654926 | Msa0309870:intron | 45.0% |
| CATTGAATGATTCCGTCTCG+TGG | + | chr2_4:4654934-4654953 | None:intergenic | 45.0% | |
| !! | TAAGCGAAGAGCACTTACCA+GGG | + | chr2_4:4655011-4655030 | None:intergenic | 45.0% |
| GCTTACACCTAGTTACCTAG+TGG | - | chr2_4:4655026-4655045 | Msa0309870:intron | 45.0% | |
| TGATGTCCATTACATCAGGG+GGG | - | chr2_4:4655377-4655396 | Msa0309870:intron | 45.0% | |
| ! | CATATATGGCCAGAAGTGCA+GGG | + | chr2_4:4656233-4656252 | None:intergenic | 45.0% |
| ! | ACATATATGGCCAGAAGTGC+AGG | + | chr2_4:4656234-4656253 | None:intergenic | 45.0% |
| ATATATGTCCTCCAGGGACT+GGG | - | chr2_4:4656246-4656265 | Msa0309870:intron | 45.0% | |
| GCTATGTTGTAACTCCCAGA+TGG | + | chr2_4:4656314-4656333 | None:intergenic | 45.0% | |
| TGGGAGTTACAACATAGCTC+AGG | - | chr2_4:4656316-4656335 | Msa0309870:intron | 45.0% | |
| CCAAATTCAGCACTTGATGC+CGG | - | chr2_4:4656407-4656426 | Msa0309870:intron | 45.0% | |
| !!! | AGTGCACGGTTTTCTGAGAT+TGG | - | chr2_4:4656533-4656552 | Msa0309870:intron | 45.0% |
| !!! | GTGCACGGTTTTCTGAGATT+GGG | - | chr2_4:4656534-4656553 | Msa0309870:intron | 45.0% |
| !!! | TGCACGGTTTTCTGAGATTG+GGG | - | chr2_4:4656535-4656554 | Msa0309870:intron | 45.0% |
| GGCATGAACAATTACAGTGC+TGG | - | chr2_4:4656624-4656643 | Msa0309870:five_prime_UTR | 45.0% | |
| !! | GTGCTGGTGCCTTAATTTTC+GGG | - | chr2_4:4656640-4656659 | Msa0309870:five_prime_UTR | 45.0% |
| ! | TGCTGGTGCCTTAATTTTCG+GGG | - | chr2_4:4656641-4656660 | Msa0309870:five_prime_UTR | 45.0% |
| ! | AAGCAGCTTTGACACCAAGT+TGG | - | chr2_4:4656862-4656881 | Msa0309870:five_prime_UTR | 45.0% |
| !! | AAAAAAAATAATAATAACTT+TGG | + | chr2_4:4653617-4653636 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+AGG | + | chr2_4:4653941-4653960 | None:intergenic | 5.0% |
| ! | GAGTGAGAGAGAGATGATGG+AGG | - | chr2_4:4653445-4653464 | Msa0309870:three_prime_UTR | 50.0% |
| CATGGCCAGGATGCATAAAC+TGG | - | chr2_4:4654196-4654215 | Msa0309870:CDS | 50.0% | |
| TGGCAGCCATATGCTTGTAC+TGG | - | chr2_4:4654357-4654376 | Msa0309870:intron | 50.0% | |
| TGATGTCATTCGGCGACTAG+AGG | - | chr2_4:4654629-4654648 | Msa0309870:intron | 50.0% | |
| GTGCTTCTGTTTGCCAGTCT+TGG | - | chr2_4:4654694-4654713 | Msa0309870:intron | 50.0% | |
| CTTCTGTTTGCCAGTCTTGG+AGG | - | chr2_4:4654697-4654716 | Msa0309870:intron | 50.0% | |
| GTTAAGAGCCCAGAGTTCTG+TGG | - | chr2_4:4654738-4654757 | Msa0309870:CDS | 50.0% | |
| GGCTCAGACAAAGGAATAGG+TGG | + | chr2_4:4654990-4655009 | None:intergenic | 50.0% | |
| CAGGGCTCAGACAAAGGAAT+AGG | + | chr2_4:4654993-4655012 | None:intergenic | 50.0% | |
| CTATTCCTTTGTCTGAGCCC+TGG | - | chr2_4:4654991-4655010 | Msa0309870:intron | 50.0% | |
| ACTTACCAGGGCTCAGACAA+AGG | + | chr2_4:4654999-4655018 | None:intergenic | 50.0% | |
| !! | GTAAGCGAAGAGCACTTACC+AGG | + | chr2_4:4655012-4655031 | None:intergenic | 50.0% |
| TGGTCCTCTTAGCAGAAAGG+AGG | + | chr2_4:4655617-4655636 | None:intergenic | 50.0% | |
| TCCTTTCTGCTAAGAGGACC+AGG | - | chr2_4:4655616-4655635 | Msa0309870:intron | 50.0% | |
| TCCTGGTCCTCTTAGCAGAA+AGG | + | chr2_4:4655620-4655639 | None:intergenic | 50.0% | |
| CTCAGTGTAGGTTGTTCTCC+TGG | + | chr2_4:4655637-4655656 | None:intergenic | 50.0% | |
| TCTGGCCATATATGTCCTCC+AGG | - | chr2_4:4656239-4656258 | Msa0309870:intron | 50.0% | |
| CTGGCCATATATGTCCTCCA+GGG | - | chr2_4:4656240-4656259 | Msa0309870:intron | 50.0% | |
| CAGTCCCTGGAGGACATATA+TGG | + | chr2_4:4656247-4656266 | None:intergenic | 50.0% | |
| CATATATGTCCTCCAGGGAC+TGG | - | chr2_4:4656245-4656264 | Msa0309870:intron | 50.0% | |
| TATCGCCAAAGGTCCCATCT+GGG | - | chr2_4:4656297-4656316 | Msa0309870:intron | 50.0% | |
| TAACTCCCAGATGGGACCTT+TGG | + | chr2_4:4656305-4656324 | None:intergenic | 50.0% | |
| CTAAATGTGCTCGGAACTCG+AGG | - | chr2_4:4656350-4656369 | Msa0309870:intron | 50.0% | |
| !! | CCGGCATCAAGTGCTGAATT+TGG | + | chr2_4:4656410-4656429 | None:intergenic | 50.0% |
| AATTCAGCACTTGATGCCGG+CGG | - | chr2_4:4656410-4656429 | Msa0309870:intron | 50.0% | |
| !! | TGAATTAGCTCTGGCTGTCC+AGG | + | chr2_4:4656443-4656462 | None:intergenic | 50.0% |
| AGGGAACGGTGAATTAGCTC+TGG | + | chr2_4:4656452-4656471 | None:intergenic | 50.0% | |
| GCTAATTCACCGTTCCCTAG+AGG | - | chr2_4:4656454-4656473 | Msa0309870:intron | 50.0% | |
| ! | GGAATGAGTCCTCTAGGGAA+CGG | + | chr2_4:4656466-4656485 | None:intergenic | 50.0% |
| GTTCCCTAGAGGACTCATTC+CGG | - | chr2_4:4656465-4656484 | Msa0309870:intron | 50.0% | |
| !!! | GCACGGTTTTCTGAGATTGG+GGG | - | chr2_4:4656536-4656555 | Msa0309870:intron | 50.0% |
| GATTGGGGGATCCTGTAATG+AGG | - | chr2_4:4656550-4656569 | Msa0309870:intron | 50.0% | |
| GCCGTCATCATCCTCATTAC+AGG | + | chr2_4:4656564-4656583 | None:intergenic | 50.0% | |
| TGACGGCAAGATGAGACCTT+TGG | - | chr2_4:4656577-4656596 | Msa0309870:intron | 50.0% | |
| TTATCATGTTCCGGTGGTGC+TGG | + | chr2_4:4656749-4656768 | None:intergenic | 50.0% | |
| CAACCTGCTTCAGGGACACA+GGG | + | chr2_4:4654776-4654795 | None:intergenic | 55.0% | |
| GCATTGCCCCCCTGATGTAA+TGG | + | chr2_4:4655386-4655405 | None:intergenic | 55.0% | |
| ! | ATATGGCCAGAAGTGCAGGG+AGG | + | chr2_4:4656230-4656249 | None:intergenic | 55.0% |
| GTATCGCCAAAGGTCCCATC+TGG | - | chr2_4:4656296-4656315 | Msa0309870:intron | 55.0% | |
| !! | TAGCTCTGGCTGTCCAGGAA+CGG | + | chr2_4:4656438-4656457 | None:intergenic | 55.0% |
| GCTCCGGAATGAGTCCTCTA+GGG | + | chr2_4:4656471-4656490 | None:intergenic | 55.0% | |
| TGCTCCGGAATGAGTCCTCT+AGG | + | chr2_4:4656472-4656491 | None:intergenic | 55.0% | |
| CCATCGAGTTCAGCAGTGCA+CGG | - | chr2_4:4656519-4656538 | Msa0309870:intron | 55.0% | |
| !! | GGTGCTGGTTGAGATGGTGT+CGG | + | chr2_4:4656734-4656753 | None:intergenic | 55.0% |
| ACCATCTCAACCAGCACCAC+CGG | - | chr2_4:4656736-4656755 | Msa0309870:intron | 55.0% | |
| GTTCCCTGTGTCCCTGAAGC+AGG | - | chr2_4:4654770-4654789 | Msa0309870:CDS | 60.0% | |
| CCAACCTGCTTCAGGGACAC+AGG | + | chr2_4:4654777-4654796 | None:intergenic | 60.0% | |
| CCTGTGTCCCTGAAGCAGGT+TGG | - | chr2_4:4654774-4654793 | Msa0309870:CDS | 60.0% | |
| TTTCAGCCAGGGCCACGAGA+CGG | - | chr2_4:4654919-4654938 | Msa0309870:intron | 60.0% | |
| ATGATTCCGTCTCGTGGCCC+TGG | + | chr2_4:4654928-4654947 | None:intergenic | 60.0% | |
| ACACAGCCTCCCTGCACTTC+TGG | - | chr2_4:4656221-4656240 | Msa0309870:intron | 60.0% | |
| CCGTGCACTGCTGAACTCGA+TGG | + | chr2_4:4656522-4656541 | None:intergenic | 60.0% | |
| CTTCCACCCAACCACCTGCT+GGG | - | chr2_4:4656705-4656724 | Msa0309870:intron | 60.0% | |
| TTCCACCCAACCACCTGCTG+GGG | - | chr2_4:4656706-4656725 | Msa0309870:intron | 60.0% | |
| !! | TCCGGTGGTGCTGGTTGAGA+TGG | + | chr2_4:4656740-4656759 | None:intergenic | 60.0% |
| CTCGTCTTCCCAGTCCCTGG+AGG | + | chr2_4:4656257-4656276 | None:intergenic | 65.0% | |
| TGCTCGGAACTCGAGGCCCA+AGG | - | chr2_4:4656357-4656376 | Msa0309870:intron | 65.0% | |
| GCTTCCACCCAACCACCTGC+TGG | - | chr2_4:4656704-4656723 | Msa0309870:intron | 65.0% | |
| CTGCTGGGCGAACTTGCCCC+CGG | - | chr2_4:4654596-4654615 | Msa0309870:intron | 70.0% | |
| CGGCTCGTCTTCCCAGTCCC+TGG | + | chr2_4:4656260-4656279 | None:intergenic | 70.0% | |
| CTGTCCAGGAACGGAGCCGC+CGG | + | chr2_4:4656429-4656448 | None:intergenic | 70.0% | |
| GATGCCGGCGGCTCCGTTCC+TGG | - | chr2_4:4656422-4656441 | Msa0309870:intron | 75.0% | |
| CGCCCCAGCAGGTGGTTGGG+TGG | + | chr2_4:4656711-4656730 | None:intergenic | 75.0% | |
| CGGCGCCCCAGCAGGTGGTT+GGG | + | chr2_4:4656714-4656733 | None:intergenic | 75.0% | |
| TCGGCGCCCCAGCAGGTGGT+TGG | + | chr2_4:4656715-4656734 | None:intergenic | 75.0% | |
| !! | GATGGTGTCGGCGCCCCAGC+AGG | + | chr2_4:4656722-4656741 | None:intergenic | 75.0% |
| !!! | GGTGTCGGCGCCCCAGCAGG+TGG | + | chr2_4:4656719-4656738 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4653432 | 4656994 | 4653432 | ID=Msa0309870;Name=Msa0309870 |
| chr2_4 | mRNA | 4653432 | 4656994 | 4653432 | ID=Msa0309870-mRNA-1;Parent=Msa0309870;Name=Msa0309870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=309|1|1|1|0.6|0.5|6|99|427 |
| chr2_4 | exon | 4653432 | 4654242 | 4653432 | ID=Msa0309870-mRNA-1:exon:1595;Parent=Msa0309870-mRNA-1 |
| chr2_4 | exon | 4654705 | 4654837 | 4654705 | ID=Msa0309870-mRNA-1:exon:1594;Parent=Msa0309870-mRNA-1 |
| chr2_4 | exon | 4655414 | 4655501 | 4655414 | ID=Msa0309870-mRNA-1:exon:1593;Parent=Msa0309870-mRNA-1 |
| chr2_4 | exon | 4655635 | 4656063 | 4655635 | ID=Msa0309870-mRNA-1:exon:1592;Parent=Msa0309870-mRNA-1 |
| chr2_4 | exon | 4656595 | 4656662 | 4656595 | ID=Msa0309870-mRNA-1:exon:1591;Parent=Msa0309870-mRNA-1 |
| chr2_4 | exon | 4656832 | 4656994 | 4656832 | ID=Msa0309870-mRNA-1:exon:1590;Parent=Msa0309870-mRNA-1 |
| chr2_4 | five_prime_UTR | 4656832 | 4656994 | 4656832 | ID=Msa0309870-mRNA-1:five_prime_utr;Parent=Msa0309870-mRNA-1 |
| chr2_4 | five_prime_UTR | 4656595 | 4656662 | 4656595 | ID=Msa0309870-mRNA-1:five_prime_utr;Parent=Msa0309870-mRNA-1 |
| chr2_4 | five_prime_UTR | 4655986 | 4656063 | 4655986 | ID=Msa0309870-mRNA-1:five_prime_utr;Parent=Msa0309870-mRNA-1 |
| chr2_4 | CDS | 4655635 | 4655985 | 4655635 | ID=Msa0309870-mRNA-1:cds;Parent=Msa0309870-mRNA-1 |
| chr2_4 | CDS | 4655414 | 4655501 | 4655414 | ID=Msa0309870-mRNA-1:cds;Parent=Msa0309870-mRNA-1 |
| chr2_4 | CDS | 4654705 | 4654837 | 4654705 | ID=Msa0309870-mRNA-1:cds;Parent=Msa0309870-mRNA-1 |
| chr2_4 | CDS | 4653531 | 4654242 | 4653531 | ID=Msa0309870-mRNA-1:cds;Parent=Msa0309870-mRNA-1 |
| chr2_4 | three_prime_UTR | 4653432 | 4653530 | 4653432 | ID=Msa0309870-mRNA-1:three_prime_utr;Parent=Msa0309870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
