Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310470 | MCI05308.1 | 88.312 | 77 | 4 | 1 | 15 | 91 | 12 | 83 | 8.14e-38 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310470 | sp|P51139|MSK3_MEDSA | 88.312 | 77 | 4 | 1 | 15 | 91 | 237 | 308 | 2.38e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310470 | MtrunA17_Chr7g0270371 | 88.312 | 77 | 4 | 1 | 15 | 91 | 238 | 309 | 1.36e-39 | 140 |
| Msa0310470 | MtrunA17_Chr1g0193081 | 87.013 | 77 | 5 | 1 | 15 | 91 | 238 | 309 | 1.47e-38 | 137 |
| Msa0310470 | MtrunA17_Chr1g0194201 | 85.714 | 77 | 6 | 1 | 15 | 91 | 238 | 309 | 1.98e-38 | 137 |
| Msa0310470 | MtrunA17_Chr2g0277011 | 85.714 | 77 | 6 | 1 | 15 | 91 | 253 | 324 | 7.37e-38 | 135 |
| Msa0310470 | MtrunA17_Chr7g0246591 | 83.117 | 77 | 8 | 1 | 15 | 91 | 304 | 375 | 1.83e-37 | 135 |
| Msa0310470 | MtrunA17_Chr8g0350311 | 81.818 | 77 | 9 | 1 | 15 | 91 | 302 | 373 | 2.09e-36 | 132 |
| Msa0310470 | MtrunA17_Chr2g0320011 | 80.519 | 77 | 10 | 1 | 15 | 91 | 251 | 322 | 2.29e-35 | 129 |
| Msa0310470 | MtrunA17_Chr2g0284091 | 75.325 | 77 | 14 | 1 | 15 | 91 | 203 | 274 | 4.48e-34 | 124 |
| Msa0310470 | MtrunA17_Chr4g0030241 | 40.000 | 80 | 43 | 1 | 14 | 93 | 63 | 137 | 1.71e-14 | 68.6 |
| Msa0310470 | MtrunA17_Chr7g0273601 | 40.000 | 95 | 46 | 3 | 6 | 94 | 261 | 350 | 8.65e-14 | 69.3 |
| Msa0310470 | MtrunA17_Chr4g0030231 | 44.928 | 69 | 33 | 1 | 14 | 82 | 202 | 265 | 1.65e-13 | 68.2 |
| Msa0310470 | MtrunA17_Chr4g0045841 | 40.000 | 75 | 40 | 1 | 14 | 88 | 217 | 286 | 2.14e-13 | 68.2 |
| Msa0310470 | MtrunA17_Chr5g0396361 | 35.185 | 108 | 64 | 2 | 14 | 121 | 302 | 403 | 2.32e-13 | 68.2 |
| Msa0310470 | MtrunA17_Chr7g0248461 | 48.438 | 64 | 28 | 1 | 14 | 77 | 200 | 258 | 3.38e-13 | 67.4 |
| Msa0310470 | MtrunA17_Chr8g0348481 | 48.438 | 64 | 28 | 1 | 14 | 77 | 199 | 257 | 3.53e-13 | 67.4 |
| Msa0310470 | MtrunA17_Chr1g0191221 | 41.379 | 87 | 40 | 3 | 14 | 94 | 284 | 365 | 3.86e-13 | 67.4 |
| Msa0310470 | MtrunA17_Chr4g0051261 | 40.299 | 67 | 35 | 1 | 14 | 80 | 165 | 226 | 4.96e-13 | 66.6 |
| Msa0310470 | MtrunA17_Chr2g0293491 | 41.538 | 65 | 33 | 1 | 14 | 78 | 165 | 224 | 5.11e-13 | 66.2 |
| Msa0310470 | MtrunA17_Chr8g0387401 | 45.312 | 64 | 30 | 1 | 14 | 77 | 214 | 272 | 9.86e-13 | 66.2 |
| Msa0310470 | MtrunA17_Chr8g0377071 | 46.875 | 64 | 29 | 1 | 14 | 77 | 546 | 604 | 1.11e-12 | 66.2 |
| Msa0310470 | MtrunA17_Chr4g0002001 | 42.647 | 68 | 34 | 1 | 14 | 81 | 182 | 244 | 1.28e-12 | 65.5 |
| Msa0310470 | MtrunA17_Chr4g0030151 | 44.615 | 65 | 31 | 1 | 14 | 78 | 201 | 260 | 1.33e-12 | 65.9 |
| Msa0310470 | MtrunA17_Chr8g0385971 | 37.778 | 90 | 45 | 3 | 14 | 97 | 252 | 336 | 1.63e-12 | 65.9 |
| Msa0310470 | MtrunA17_Chr4g0066691 | 42.857 | 70 | 35 | 1 | 14 | 83 | 266 | 330 | 1.71e-12 | 65.5 |
| Msa0310470 | MtrunA17_Chr3g0122781 | 46.875 | 64 | 29 | 1 | 14 | 77 | 577 | 635 | 2.42e-12 | 65.5 |
| Msa0310470 | MtrunA17_Chr8g0378831 | 46.875 | 64 | 29 | 1 | 14 | 77 | 195 | 253 | 2.86e-12 | 64.7 |
| Msa0310470 | MtrunA17_Chr5g0397261 | 43.750 | 64 | 31 | 1 | 14 | 77 | 203 | 261 | 6.06e-12 | 63.9 |
| Msa0310470 | MtrunA17_Chr2g0286421 | 41.429 | 70 | 36 | 1 | 14 | 83 | 264 | 328 | 6.57e-12 | 63.9 |
| Msa0310470 | MtrunA17_Chr8g0359091 | 48.571 | 70 | 30 | 2 | 14 | 82 | 192 | 256 | 7.53e-12 | 63.9 |
| Msa0310470 | MtrunA17_Chr1g0201571 | 41.791 | 67 | 34 | 1 | 14 | 80 | 288 | 349 | 7.69e-12 | 63.9 |
| Msa0310470 | MtrunA17_Chr4g0057791 | 45.312 | 64 | 30 | 1 | 14 | 77 | 381 | 439 | 1.08e-11 | 63.2 |
| Msa0310470 | MtrunA17_Chr8g0369241 | 45.714 | 70 | 31 | 3 | 7 | 75 | 296 | 359 | 1.09e-11 | 63.5 |
| Msa0310470 | MtrunA17_Chr8g0358921 | 44.776 | 67 | 32 | 1 | 14 | 80 | 213 | 274 | 1.69e-11 | 62.4 |
| Msa0310470 | MtrunA17_Chr2g0317501 | 41.791 | 67 | 34 | 1 | 14 | 80 | 296 | 357 | 1.69e-11 | 62.8 |
| Msa0310470 | MtrunA17_Chr3g0131861 | 39.080 | 87 | 42 | 3 | 14 | 94 | 259 | 340 | 1.69e-11 | 62.8 |
| Msa0310470 | MtrunA17_Chr4g0040141 | 40.299 | 67 | 35 | 1 | 14 | 80 | 291 | 352 | 2.79e-11 | 62.0 |
| Msa0310470 | MtrunA17_Chr8g0383451 | 37.500 | 72 | 40 | 1 | 14 | 85 | 160 | 226 | 3.46e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310470 | AT1G09840.11 | 84.416 | 77 | 7 | 1 | 15 | 91 | 119 | 190 | 1.91e-38 | 134 |
| Msa0310470 | AT3G05840.2 | 85.714 | 77 | 6 | 1 | 15 | 91 | 236 | 307 | 3.63e-38 | 136 |
| Msa0310470 | AT3G05840.1 | 85.714 | 77 | 6 | 1 | 15 | 91 | 236 | 307 | 3.63e-38 | 136 |
| Msa0310470 | AT5G26751.1 | 85.714 | 77 | 6 | 1 | 15 | 91 | 232 | 303 | 4.19e-38 | 136 |
| Msa0310470 | AT1G57870.1 | 85.714 | 77 | 6 | 1 | 15 | 91 | 245 | 316 | 8.78e-38 | 135 |
| Msa0310470 | AT1G57870.4 | 85.714 | 77 | 6 | 1 | 15 | 91 | 245 | 316 | 8.78e-38 | 135 |
| Msa0310470 | AT1G57870.2 | 85.714 | 77 | 6 | 1 | 15 | 91 | 245 | 316 | 8.78e-38 | 135 |
| Msa0310470 | AT5G14640.1 | 85.714 | 77 | 6 | 1 | 15 | 91 | 237 | 308 | 8.90e-38 | 135 |
| Msa0310470 | AT5G14640.2 | 85.714 | 77 | 6 | 1 | 15 | 91 | 237 | 308 | 8.90e-38 | 135 |
| Msa0310470 | AT1G57870.3 | 85.714 | 77 | 6 | 1 | 15 | 91 | 245 | 316 | 1.45e-37 | 135 |
| Msa0310470 | AT1G09840.3 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.7 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.10 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.6 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.4 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.1 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.9 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.5 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.8 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT1G09840.2 | 84.416 | 77 | 7 | 1 | 15 | 91 | 246 | 317 | 1.62e-37 | 135 |
| Msa0310470 | AT4G00720.1 | 79.221 | 77 | 11 | 1 | 15 | 91 | 301 | 372 | 7.44e-36 | 131 |
| Msa0310470 | AT2G30980.1 | 79.221 | 77 | 11 | 1 | 15 | 91 | 235 | 306 | 6.48e-35 | 128 |
| Msa0310470 | AT1G06390.2 | 79.221 | 77 | 11 | 1 | 15 | 91 | 233 | 304 | 7.16e-35 | 127 |
| Msa0310470 | AT1G06390.1 | 79.221 | 77 | 11 | 1 | 15 | 91 | 233 | 304 | 7.16e-35 | 127 |
| Msa0310470 | AT4G18710.1 | 77.922 | 77 | 12 | 1 | 15 | 91 | 203 | 274 | 1.59e-34 | 126 |
| Msa0310470 | AT4G18710.2 | 75.325 | 77 | 14 | 1 | 15 | 91 | 197 | 268 | 2.17e-33 | 120 |
| Msa0310470 | AT3G61160.3 | 71.429 | 77 | 17 | 1 | 15 | 91 | 265 | 336 | 2.11e-31 | 117 |
| Msa0310470 | AT3G61160.6 | 71.429 | 77 | 17 | 1 | 15 | 91 | 272 | 343 | 2.63e-31 | 117 |
| Msa0310470 | AT3G61160.5 | 71.429 | 77 | 17 | 1 | 15 | 91 | 265 | 336 | 3.11e-31 | 117 |
| Msa0310470 | AT3G61160.1 | 71.429 | 77 | 17 | 1 | 15 | 91 | 265 | 336 | 7.89e-31 | 117 |
| Msa0310470 | AT3G61160.4 | 71.429 | 77 | 17 | 1 | 15 | 91 | 265 | 336 | 8.76e-31 | 117 |
| Msa0310470 | AT3G61160.2 | 71.429 | 77 | 17 | 1 | 15 | 91 | 272 | 343 | 9.47e-31 | 117 |
| Msa0310470 | AT5G63370.5 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.10e-15 | 73.9 |
| Msa0310470 | AT5G63370.10 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.10e-15 | 73.9 |
| Msa0310470 | AT5G63370.7 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.60e-15 | 73.9 |
| Msa0310470 | AT5G63370.8 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.60e-15 | 73.9 |
| Msa0310470 | AT5G63370.4 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.60e-15 | 73.9 |
| Msa0310470 | AT5G63370.6 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.60e-15 | 73.9 |
| Msa0310470 | AT5G63370.1 | 50.769 | 65 | 27 | 1 | 14 | 78 | 463 | 522 | 3.60e-15 | 73.9 |
| Msa0310470 | AT5G63370.9 | 50.769 | 65 | 27 | 1 | 14 | 78 | 329 | 388 | 3.98e-15 | 73.6 |
| Msa0310470 | AT5G63370.2 | 50.769 | 65 | 27 | 1 | 14 | 78 | 329 | 388 | 4.40e-15 | 73.6 |
| Msa0310470 | AT5G63370.3 | 50.769 | 65 | 27 | 1 | 14 | 78 | 329 | 388 | 4.40e-15 | 73.6 |
| Msa0310470 | AT2G46070.2 | 51.562 | 64 | 26 | 1 | 14 | 77 | 203 | 261 | 1.36e-14 | 71.6 |
| Msa0310470 | AT2G46070.1 | 51.562 | 64 | 26 | 1 | 14 | 77 | 203 | 261 | 1.94e-14 | 71.2 |
| Msa0310470 | AT2G46070.3 | 51.562 | 64 | 26 | 1 | 14 | 77 | 237 | 295 | 2.09e-14 | 71.2 |
| Msa0310470 | AT2G38620.4 | 44.118 | 68 | 33 | 1 | 14 | 81 | 120 | 182 | 3.58e-14 | 69.3 |
| Msa0310470 | AT3G59790.1 | 41.096 | 73 | 38 | 1 | 14 | 86 | 222 | 289 | 4.24e-14 | 70.5 |
| Msa0310470 | AT3G48750.1 | 36.264 | 91 | 50 | 3 | 14 | 102 | 165 | 249 | 4.33e-14 | 69.7 |
| Msa0310470 | AT2G38620.2 | 44.118 | 68 | 33 | 1 | 14 | 81 | 182 | 244 | 5.89e-14 | 69.7 |
| Msa0310470 | AT1G01560.3 | 48.438 | 64 | 28 | 1 | 14 | 77 | 202 | 260 | 4.05e-13 | 67.4 |
| Msa0310470 | AT1G01560.2 | 48.438 | 64 | 28 | 1 | 14 | 77 | 202 | 260 | 5.55e-13 | 67.0 |
| Msa0310470 | AT1G67580.1 | 46.875 | 64 | 29 | 1 | 14 | 77 | 567 | 625 | 7.49e-13 | 67.0 |
| Msa0310470 | AT1G67580.2 | 46.875 | 64 | 29 | 1 | 14 | 77 | 567 | 625 | 7.49e-13 | 67.0 |
| Msa0310470 | AT3G54180.1 | 41.176 | 68 | 35 | 1 | 14 | 81 | 180 | 242 | 9.85e-13 | 66.2 |
| Msa0310470 | AT4G01370.1 | 48.438 | 64 | 28 | 1 | 14 | 77 | 205 | 263 | 1.39e-12 | 65.9 |
| Msa0310470 | AT4G10010.1 | 46.154 | 65 | 30 | 1 | 14 | 78 | 138 | 197 | 1.60e-12 | 66.2 |
| Msa0310470 | AT4G10010.2 | 46.154 | 65 | 30 | 1 | 14 | 78 | 318 | 377 | 1.81e-12 | 65.9 |
| Msa0310470 | AT3G45640.1 | 42.029 | 69 | 35 | 1 | 14 | 82 | 200 | 263 | 2.07e-12 | 65.5 |
| Msa0310470 | AT4G11330.1 | 43.750 | 64 | 31 | 1 | 14 | 77 | 205 | 263 | 3.62e-12 | 64.7 |
| Msa0310470 | AT1G71530.1 | 43.284 | 67 | 33 | 1 | 14 | 80 | 309 | 370 | 4.10e-12 | 65.1 |
| Msa0310470 | AT1G18040.1 | 37.975 | 79 | 42 | 2 | 15 | 91 | 172 | 245 | 4.16e-12 | 64.7 |
| Msa0310470 | AT1G73690.1 | 39.241 | 79 | 41 | 2 | 15 | 91 | 171 | 244 | 4.29e-12 | 64.7 |
| Msa0310470 | AT1G54610.1 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 4.68e-12 | 64.7 |
| Msa0310470 | AT1G54610.3 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 4.68e-12 | 64.7 |
| Msa0310470 | AT1G54610.2 | 44.615 | 65 | 31 | 1 | 14 | 78 | 280 | 339 | 4.68e-12 | 64.7 |
| Msa0310470 | AT1G76540.1 | 43.750 | 64 | 31 | 1 | 17 | 80 | 186 | 244 | 4.82e-12 | 64.3 |
| Msa0310470 | AT1G71530.3 | 44.615 | 65 | 31 | 1 | 14 | 78 | 309 | 368 | 5.12e-12 | 64.7 |
| Msa0310470 | AT1G71530.2 | 44.615 | 65 | 31 | 1 | 14 | 78 | 309 | 368 | 5.34e-12 | 64.7 |
| Msa0310470 | AT1G33770.1 | 43.284 | 67 | 33 | 1 | 14 | 80 | 303 | 364 | 6.97e-12 | 64.3 |
| Msa0310470 | AT1G53050.2 | 37.931 | 87 | 43 | 3 | 14 | 94 | 296 | 377 | 1.45e-11 | 63.5 |
| Msa0310470 | AT1G53050.1 | 37.931 | 87 | 43 | 3 | 14 | 94 | 296 | 377 | 1.45e-11 | 63.5 |
| Msa0310470 | AT2G43790.1 | 43.077 | 65 | 32 | 1 | 14 | 78 | 225 | 284 | 1.55e-11 | 63.2 |
| Msa0310470 | AT1G20930.1 | 42.188 | 64 | 32 | 1 | 17 | 80 | 188 | 246 | 2.04e-11 | 62.4 |
| Msa0310470 | AT1G01560.4 | 50.000 | 60 | 25 | 1 | 14 | 73 | 202 | 256 | 2.40e-11 | 62.0 |
| Msa0310470 | AT1G01560.1 | 50.000 | 60 | 25 | 1 | 14 | 73 | 202 | 256 | 2.40e-11 | 62.0 |
| Msa0310470 | AT5G50860.2 | 41.538 | 65 | 33 | 1 | 14 | 78 | 276 | 335 | 2.61e-11 | 62.4 |
| Msa0310470 | AT5G50860.1 | 41.538 | 65 | 33 | 1 | 14 | 78 | 276 | 335 | 2.65e-11 | 62.4 |
| Msa0310470 | AT1G03740.2 | 41.538 | 65 | 33 | 1 | 14 | 78 | 375 | 434 | 3.42e-11 | 62.4 |
| Msa0310470 | AT1G03740.1 | 41.538 | 65 | 33 | 1 | 14 | 78 | 375 | 434 | 3.47e-11 | 62.4 |
| Msa0310470 | AT3G01085.3 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.56e-11 | 62.4 |
| Msa0310470 | AT3G01085.1 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.77e-11 | 62.0 |
| Msa0310470 | AT3G01085.2 | 39.189 | 74 | 40 | 1 | 7 | 80 | 270 | 338 | 3.77e-11 | 62.0 |
| Msa0310470 | AT1G09600.1 | 35.802 | 81 | 47 | 1 | 14 | 94 | 325 | 400 | 4.61e-11 | 62.0 |
| Msa0310470 | AT1G18670.2 | 41.791 | 67 | 34 | 1 | 14 | 80 | 294 | 355 | 5.07e-11 | 61.6 |
| Msa0310470 | AT1G18670.1 | 41.791 | 67 | 34 | 1 | 14 | 80 | 294 | 355 | 5.15e-11 | 61.6 |
| Msa0310470 | AT1G18670.3 | 41.791 | 67 | 34 | 1 | 14 | 80 | 294 | 355 | 5.17e-11 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCTTACATTTGTTTCT+AGG | 0.116231 | 2_4:+5272753 | Msa0310470:CDS |
| ATACACCTTTAGACCGTTTA+AGG | 0.147896 | 2_4:+5274129 | Msa0310470:intron |
| CACTTGATTTCTTCCCTTGT+TGG | 0.206056 | 2_4:-5273180 | None:intergenic |
| TTTAAAGTTCAGGCAGTTAT+TGG | 0.206518 | 2_4:+5274407 | Msa0310470:CDS |
| AATTTAAACTCTGTATAATT+AGG | 0.220898 | 2_4:-5273210 | None:intergenic |
| ACTTGATTTCTTCCCTTGTT+GGG | 0.311805 | 2_4:-5273179 | None:intergenic |
| TGCTCAGTTGGTTGCGTACT+TGG | 0.314908 | 2_4:+5272836 | Msa0310470:CDS |
| AGATAAACAATGTGCTCATT+TGG | 0.319034 | 2_4:+5274225 | Msa0310470:CDS |
| GCTTGGAGTTTAACCTTAAA+CGG | 0.370274 | 2_4:-5274142 | None:intergenic |
| TGAGATTTACTCTCCTTCTA+AGG | 0.373862 | 2_4:+5274514 | Msa0310470:CDS |
| ATTGATACTGAGAAGATTGT+TGG | 0.390696 | 2_4:+5274650 | Msa0310470:CDS |
| AAACAAATGTAAGATATGTT+TGG | 0.394876 | 2_4:-5272748 | None:intergenic |
| CTTTGTATGATGGTTCCTAT+AGG | 0.404739 | 2_4:+5274438 | Msa0310470:CDS |
| CTTTGGAAGTTCTAATGTCT+TGG | 0.417717 | 2_4:+5272625 | Msa0310470:exon |
| ATGGTTCCTATAGGGTGATA+AGG | 0.433018 | 2_4:+5274447 | Msa0310470:CDS |
| GGACCCCATGCTTTGTATGA+TGG | 0.435370 | 2_4:+5274428 | Msa0310470:CDS |
| ACAAACCCTTATCACCCTAT+AGG | 0.444255 | 2_4:-5274453 | None:intergenic |
| ATACACAGAAGCTAGTTAAC+TGG | 0.448429 | 2_4:-5272874 | None:intergenic |
| TGGTTCCTATAGGGTGATAA+GGG | 0.460025 | 2_4:+5274448 | Msa0310470:CDS |
| CAACTGAAGATATGCGACTT+TGG | 0.471231 | 2_4:+5272608 | Msa0310470:five_prime_UTR |
| AGAGCTCCTGAGCTTATATT+CGG | 0.474562 | 2_4:+5272782 | Msa0310470:CDS |
| TCATTTGGTTGATGTAGCTA+AGG | 0.482770 | 2_4:+5274240 | Msa0310470:CDS |
| GCCATTGACATCTGCTCAGT+TGG | 0.486972 | 2_4:+5272824 | Msa0310470:CDS |
| TTTGTATGATGGTTCCTATA+GGG | 0.492577 | 2_4:+5274439 | Msa0310470:CDS |
| CTTGATTTCTTCCCTTGTTG+GGG | 0.500080 | 2_4:-5273178 | None:intergenic |
| CAAACTTGTGGAAATTATCA+AGG | 0.511188 | 2_4:+5272992 | Msa0310470:CDS |
| AGGAACCATCATACAAAGCA+TGG | 0.519567 | 2_4:-5274433 | None:intergenic |
| CATCAGTTACATCAGATGCT+TGG | 0.530953 | 2_4:-5274159 | None:intergenic |
| TACTGAGAAGATTGTTGGCT+CGG | 0.541038 | 2_4:+5274655 | Msa0310470:CDS |
| GGAACCATCATACAAAGCAT+GGG | 0.561104 | 2_4:-5274432 | None:intergenic |
| ACCAACTGAGCAGATGTCAA+TGG | 0.568677 | 2_4:-5272825 | None:intergenic |
| GACTGTTTCACTTGATGATG+AGG | 0.575402 | 2_4:+5274625 | Msa0310470:CDS |
| CCACTGTTTCCTAGTGAGAG+TGG | 0.575434 | 2_4:+5272963 | Msa0310470:CDS |
| GTCGCATATCTTCAGTTGGT+GGG | 0.578193 | 2_4:-5272603 | None:intergenic |
| TTGTCTACTCCACTCTCACT+AGG | 0.578433 | 2_4:-5272972 | None:intergenic |
| CAAAGTCGCATATCTTCAGT+TGG | 0.580954 | 2_4:-5272607 | None:intergenic |
| GTTGCACCGAATATAAGCTC+AGG | 0.582148 | 2_4:-5272788 | None:intergenic |
| GGTTGATGCTTCGCAGACTG+AGG | 0.585844 | 2_4:+5274676 | Msa0310470:CDS |
| TGAGCAGATGTCAATGGCTG+TGG | 0.629813 | 2_4:-5272819 | None:intergenic |
| GAGTGGAGTAGACAAACTTG+TGG | 0.646343 | 2_4:+5272980 | Msa0310470:CDS |
| AGTCGCATATCTTCAGTTGG+TGG | 0.661802 | 2_4:-5272604 | None:intergenic |
| CCACTCTCACTAGGAAACAG+TGG | 0.673051 | 2_4:-5272963 | None:intergenic |
| GAACCATCATACAAAGCATG+GGG | 0.696724 | 2_4:-5274431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAACTCTGTATAATT+AGG | - | chr2_4:5273213-5273232 | None:intergenic | 15.0% |
| !! | ATAAGAAAAATATTACATGA+TGG | + | chr2_4:5273678-5273697 | Msa0310470:intron | 15.0% |
| !! | TAAGAAAAATATTACATGAT+GGG | + | chr2_4:5273679-5273698 | Msa0310470:intron | 15.0% |
| !! | TTTGAAAAAAAAAACTTTGT+TGG | - | chr2_4:5273807-5273826 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTGAAAAAGAATA+TGG | + | chr2_4:5274324-5274343 | Msa0310470:intron | 15.0% |
| !!! | TTTTCTTTGAAAAAGAATAT+GGG | + | chr2_4:5274325-5274344 | Msa0310470:intron | 15.0% |
| !! | AATTTAAACTCTGTATAATT+AGG | - | chr2_4:5273213-5273232 | None:intergenic | 15.0% |
| !! | ATAAGAAAAATATTACATGA+TGG | + | chr2_4:5273678-5273697 | Msa0310470:intron | 15.0% |
| !! | TAAGAAAAATATTACATGAT+GGG | + | chr2_4:5273679-5273698 | Msa0310470:intron | 15.0% |
| !! | TTTGAAAAAAAAAACTTTGT+TGG | - | chr2_4:5273807-5273826 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTGAAAAAGAATA+TGG | + | chr2_4:5274324-5274343 | Msa0310470:intron | 15.0% |
| !!! | TTTTCTTTGAAAAAGAATAT+GGG | + | chr2_4:5274325-5274344 | Msa0310470:intron | 15.0% |
| !!! | ATAGCTATCTGAATTTTATA+AGG | + | chr2_4:5272689-5272708 | Msa0310470:intron | 20.0% |
| !!! | TAAATGCTATATGATTTTAC+AGG | + | chr2_4:5272714-5272733 | Msa0310470:intron | 20.0% |
| !!! | TATATGATTTTACAGGTTAA+AGG | + | chr2_4:5272721-5272740 | Msa0310470:intron | 20.0% |
| !! | AAACAAATGTAAGATATGTT+TGG | - | chr2_4:5272751-5272770 | None:intergenic | 20.0% |
| !! | TTTGAATGAATTTAATGAGT+AGG | + | chr2_4:5273499-5273518 | Msa0310470:intron | 20.0% |
| !!! | GCACATGTTTATATTTTATT+TGG | + | chr2_4:5273636-5273655 | Msa0310470:intron | 20.0% |
| !! | AAGAAAAATATTACATGATG+GGG | + | chr2_4:5273680-5273699 | Msa0310470:intron | 20.0% |
| !! | AGTTCAAATTCAATCAAATT+TGG | - | chr2_4:5273877-5273896 | None:intergenic | 20.0% |
| !! | TTGAACTTGAATAATTAGTT+TGG | + | chr2_4:5273890-5273909 | Msa0310470:intron | 20.0% |
| !! | AAATTCATAAACTCAAATCA+AGG | - | chr2_4:5274068-5274087 | None:intergenic | 20.0% |
| !!! | GAATTTTACTATATGTTACA+TGG | + | chr2_4:5274082-5274101 | Msa0310470:intron | 20.0% |
| !!! | TTTAATTTATCCATCTCATT+AGG | - | chr2_4:5274371-5274390 | None:intergenic | 20.0% |
| !! | TAATGAGATGGATAAATTAA+AGG | + | chr2_4:5274370-5274389 | Msa0310470:intron | 20.0% |
| !! | AATGAGATGGATAAATTAAA+GGG | + | chr2_4:5274371-5274390 | Msa0310470:intron | 20.0% |
| !!! | TATTTGTTTTGAATTGTTCA+AGG | + | chr2_4:5274562-5274581 | Msa0310470:intron | 20.0% |
| !!! | ATAGCTATCTGAATTTTATA+AGG | + | chr2_4:5272689-5272708 | Msa0310470:intron | 20.0% |
| !!! | TAAATGCTATATGATTTTAC+AGG | + | chr2_4:5272714-5272733 | Msa0310470:intron | 20.0% |
| !!! | TATATGATTTTACAGGTTAA+AGG | + | chr2_4:5272721-5272740 | Msa0310470:intron | 20.0% |
| !! | AAACAAATGTAAGATATGTT+TGG | - | chr2_4:5272751-5272770 | None:intergenic | 20.0% |
| !! | TTTGAATGAATTTAATGAGT+AGG | + | chr2_4:5273499-5273518 | Msa0310470:intron | 20.0% |
| !!! | GCACATGTTTATATTTTATT+TGG | + | chr2_4:5273636-5273655 | Msa0310470:intron | 20.0% |
| !! | AAGAAAAATATTACATGATG+GGG | + | chr2_4:5273680-5273699 | Msa0310470:intron | 20.0% |
| !! | AGTTCAAATTCAATCAAATT+TGG | - | chr2_4:5273877-5273896 | None:intergenic | 20.0% |
| !! | TTGAACTTGAATAATTAGTT+TGG | + | chr2_4:5273890-5273909 | Msa0310470:intron | 20.0% |
| !! | AAATTCATAAACTCAAATCA+AGG | - | chr2_4:5274068-5274087 | None:intergenic | 20.0% |
| !!! | GAATTTTACTATATGTTACA+TGG | + | chr2_4:5274082-5274101 | Msa0310470:intron | 20.0% |
| !!! | TTTAATTTATCCATCTCATT+AGG | - | chr2_4:5274371-5274390 | None:intergenic | 20.0% |
| !! | TAATGAGATGGATAAATTAA+AGG | + | chr2_4:5274370-5274389 | Msa0310470:intron | 20.0% |
| !! | AATGAGATGGATAAATTAAA+GGG | + | chr2_4:5274371-5274390 | Msa0310470:intron | 20.0% |
| !!! | TATTTGTTTTGAATTGTTCA+AGG | + | chr2_4:5274562-5274581 | Msa0310470:intron | 20.0% |
| !! | CATATCTTACATTTGTTTCT+AGG | + | chr2_4:5272753-5272772 | Msa0310470:CDS | 25.0% |
| ! | AAACGAAATGAAAAGATGAA+AGG | - | chr2_4:5273096-5273115 | None:intergenic | 25.0% |
| ! | AAATCAACTTTATGTCAGTT+GGG | - | chr2_4:5273529-5273548 | None:intergenic | 25.0% |
| ! | ATATCATAAGTTATGTACCA+TGG | - | chr2_4:5273966-5273985 | None:intergenic | 25.0% |
| ! | TGGTACATAACTTATGATAT+TGG | + | chr2_4:5273966-5273985 | Msa0310470:intron | 25.0% |
| ! | ATCACAATATAGTTAACACA+TGG | - | chr2_4:5274023-5274042 | None:intergenic | 25.0% |
| ! | ATAATTAGAGTTGAGTTTAC+AGG | + | chr2_4:5274041-5274060 | Msa0310470:intron | 25.0% |
| !! | TGTAGAATGTAGAATTTGTT+TGG | + | chr2_4:5274288-5274307 | Msa0310470:intron | 25.0% |
| ! | ATGAGATGGATAAATTAAAG+GGG | + | chr2_4:5274372-5274391 | Msa0310470:intron | 25.0% |
| !! | AATTTTTACACCTCATTTGT+TGG | + | chr2_4:5274538-5274557 | Msa0310470:intron | 25.0% |
| ! | AAACAAATAACCAACAAATG+AGG | - | chr2_4:5274551-5274570 | None:intergenic | 25.0% |
| ! | TGGACCTAAATTTATCATTT+AGG | + | chr2_4:5274598-5274617 | Msa0310470:intron | 25.0% |
| ! | AACGCCTAAATGATAAATTT+AGG | - | chr2_4:5274605-5274624 | None:intergenic | 25.0% |
| !! | CATATCTTACATTTGTTTCT+AGG | + | chr2_4:5272753-5272772 | Msa0310470:CDS | 25.0% |
| ! | AAACGAAATGAAAAGATGAA+AGG | - | chr2_4:5273096-5273115 | None:intergenic | 25.0% |
| ! | AAATCAACTTTATGTCAGTT+GGG | - | chr2_4:5273529-5273548 | None:intergenic | 25.0% |
| ! | ATATCATAAGTTATGTACCA+TGG | - | chr2_4:5273966-5273985 | None:intergenic | 25.0% |
| ! | TGGTACATAACTTATGATAT+TGG | + | chr2_4:5273966-5273985 | Msa0310470:intron | 25.0% |
| ! | ATCACAATATAGTTAACACA+TGG | - | chr2_4:5274023-5274042 | None:intergenic | 25.0% |
| ! | ATAATTAGAGTTGAGTTTAC+AGG | + | chr2_4:5274041-5274060 | Msa0310470:intron | 25.0% |
| !! | TGTAGAATGTAGAATTTGTT+TGG | + | chr2_4:5274288-5274307 | Msa0310470:intron | 25.0% |
| ! | ATGAGATGGATAAATTAAAG+GGG | + | chr2_4:5274372-5274391 | Msa0310470:intron | 25.0% |
| !! | AATTTTTACACCTCATTTGT+TGG | + | chr2_4:5274538-5274557 | Msa0310470:intron | 25.0% |
| ! | AAACAAATAACCAACAAATG+AGG | - | chr2_4:5274551-5274570 | None:intergenic | 25.0% |
| ! | TGGACCTAAATTTATCATTT+AGG | + | chr2_4:5274598-5274617 | Msa0310470:intron | 25.0% |
| ! | AACGCCTAAATGATAAATTT+AGG | - | chr2_4:5274605-5274624 | None:intergenic | 25.0% |
| AAACAAACGAAAGGATTTCA+AGG | - | chr2_4:5272665-5272684 | None:intergenic | 30.0% | |
| CAAACTTGTGGAAATTATCA+AGG | + | chr2_4:5272992-5273011 | Msa0310470:CDS | 30.0% | |
| ATATGTTCAAGATAGTAGCA+AGG | - | chr2_4:5273060-5273079 | None:intergenic | 30.0% | |
| !! | CATGAATGAGATTTGATTTG+AGG | - | chr2_4:5273237-5273256 | None:intergenic | 30.0% |
| CAAATCTCATTCATGACATA+AGG | + | chr2_4:5273242-5273261 | Msa0310470:intron | 30.0% | |
| ! | TGATTTCTTCATCTTTTGAG+TGG | + | chr2_4:5273453-5273472 | Msa0310470:intron | 30.0% |
| TTCATTCAAACTGAATGTGA+AGG | - | chr2_4:5273489-5273508 | None:intergenic | 30.0% | |
| CAAATCAACTTTATGTCAGT+TGG | - | chr2_4:5273530-5273549 | None:intergenic | 30.0% | |
| ! | CAACTGACATAAAGTTGATT+TGG | + | chr2_4:5273528-5273547 | Msa0310470:intron | 30.0% |
| TTAAGCTCTTAAGTCTTCAT+CGG | - | chr2_4:5273752-5273771 | None:intergenic | 30.0% | |
| ACTTAAGAGCTTAAGGATAA+AGG | + | chr2_4:5273758-5273777 | Msa0310470:intron | 30.0% | |
| ! | TTTTCAAAACTCATTCCATG+AGG | + | chr2_4:5273819-5273838 | Msa0310470:intron | 30.0% |
| TTCAATCAAATTTGGCATGT+AGG | - | chr2_4:5273869-5273888 | None:intergenic | 30.0% | |
| AAAATGAAAATAGGGAACCA+TGG | + | chr2_4:5273946-5273965 | Msa0310470:intron | 30.0% | |
| CAATATAGTTAACACATGGT+GGG | - | chr2_4:5274019-5274038 | None:intergenic | 30.0% | |
| ACAATATAGTTAACACATGG+TGG | - | chr2_4:5274020-5274039 | None:intergenic | 30.0% | |
| TTTAACCTTAAACGGTCTAA+AGG | - | chr2_4:5274137-5274156 | None:intergenic | 30.0% | |
| AGATAAACAATGTGCTCATT+TGG | + | chr2_4:5274225-5274244 | Msa0310470:CDS | 30.0% | |
| !!! | TGATGTAGCTAAGGTTTTTT+CGG | + | chr2_4:5274249-5274268 | Msa0310470:intron | 30.0% |
| AGGATGAAATCCAACATTAT+CGG | - | chr2_4:5274351-5274370 | None:intergenic | 30.0% | |
| !!! | GAAGATGCTTTTTAAAGTTC+AGG | + | chr2_4:5274397-5274416 | Msa0310470:CDS | 30.0% |
| ! | TTTAAAGTTCAGGCAGTTAT+TGG | + | chr2_4:5274407-5274426 | Msa0310470:CDS | 30.0% |
| TTTGTATGATGGTTCCTATA+GGG | + | chr2_4:5274439-5274458 | Msa0310470:CDS | 30.0% | |
| GGTGTAAAAATTACCTTAGA+AGG | - | chr2_4:5274530-5274549 | None:intergenic | 30.0% | |
| !! | TTCAAGGCTATGTTTTTCAA+TGG | + | chr2_4:5274578-5274597 | Msa0310470:intron | 30.0% |
| ATTGATACTGAGAAGATTGT+TGG | + | chr2_4:5274650-5274669 | Msa0310470:CDS | 30.0% | |
| AAACAAACGAAAGGATTTCA+AGG | - | chr2_4:5272665-5272684 | None:intergenic | 30.0% | |
| CAAACTTGTGGAAATTATCA+AGG | + | chr2_4:5272992-5273011 | Msa0310470:CDS | 30.0% | |
| ATATGTTCAAGATAGTAGCA+AGG | - | chr2_4:5273060-5273079 | None:intergenic | 30.0% | |
| !! | CATGAATGAGATTTGATTTG+AGG | - | chr2_4:5273237-5273256 | None:intergenic | 30.0% |
| CAAATCTCATTCATGACATA+AGG | + | chr2_4:5273242-5273261 | Msa0310470:intron | 30.0% | |
| ! | TGATTTCTTCATCTTTTGAG+TGG | + | chr2_4:5273453-5273472 | Msa0310470:intron | 30.0% |
| TTCATTCAAACTGAATGTGA+AGG | - | chr2_4:5273489-5273508 | None:intergenic | 30.0% | |
| CAAATCAACTTTATGTCAGT+TGG | - | chr2_4:5273530-5273549 | None:intergenic | 30.0% | |
| ! | CAACTGACATAAAGTTGATT+TGG | + | chr2_4:5273528-5273547 | Msa0310470:intron | 30.0% |
| TTAAGCTCTTAAGTCTTCAT+CGG | - | chr2_4:5273752-5273771 | None:intergenic | 30.0% | |
| ACTTAAGAGCTTAAGGATAA+AGG | + | chr2_4:5273758-5273777 | Msa0310470:intron | 30.0% | |
| ! | TTTTCAAAACTCATTCCATG+AGG | + | chr2_4:5273819-5273838 | Msa0310470:intron | 30.0% |
| TTCAATCAAATTTGGCATGT+AGG | - | chr2_4:5273869-5273888 | None:intergenic | 30.0% | |
| AAAATGAAAATAGGGAACCA+TGG | + | chr2_4:5273946-5273965 | Msa0310470:intron | 30.0% | |
| CAATATAGTTAACACATGGT+GGG | - | chr2_4:5274019-5274038 | None:intergenic | 30.0% | |
| ACAATATAGTTAACACATGG+TGG | - | chr2_4:5274020-5274039 | None:intergenic | 30.0% | |
| TTTAACCTTAAACGGTCTAA+AGG | - | chr2_4:5274137-5274156 | None:intergenic | 30.0% | |
| AGATAAACAATGTGCTCATT+TGG | + | chr2_4:5274225-5274244 | Msa0310470:CDS | 30.0% | |
| !!! | TGATGTAGCTAAGGTTTTTT+CGG | + | chr2_4:5274249-5274268 | Msa0310470:intron | 30.0% |
| AGGATGAAATCCAACATTAT+CGG | - | chr2_4:5274351-5274370 | None:intergenic | 30.0% | |
| !!! | GAAGATGCTTTTTAAAGTTC+AGG | + | chr2_4:5274397-5274416 | Msa0310470:CDS | 30.0% |
| ! | TTTAAAGTTCAGGCAGTTAT+TGG | + | chr2_4:5274407-5274426 | Msa0310470:CDS | 30.0% |
| TTTGTATGATGGTTCCTATA+GGG | + | chr2_4:5274439-5274458 | Msa0310470:CDS | 30.0% | |
| GGTGTAAAAATTACCTTAGA+AGG | - | chr2_4:5274530-5274549 | None:intergenic | 30.0% | |
| !! | TTCAAGGCTATGTTTTTCAA+TGG | + | chr2_4:5274578-5274597 | Msa0310470:intron | 30.0% |
| ATTGATACTGAGAAGATTGT+TGG | + | chr2_4:5274650-5274669 | Msa0310470:CDS | 30.0% | |
| ! | CTTTGGAAGTTCTAATGTCT+TGG | + | chr2_4:5272625-5272644 | Msa0310470:exon | 35.0% |
| GCTATTGCAAAACAAACGAA+AGG | - | chr2_4:5272674-5272693 | None:intergenic | 35.0% | |
| ATACACAGAAGCTAGTTAAC+TGG | - | chr2_4:5272877-5272896 | None:intergenic | 35.0% | |
| AAGTGAACCACATGAAACTT+CGG | - | chr2_4:5273144-5273163 | None:intergenic | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | - | chr2_4:5273182-5273201 | None:intergenic | 35.0% | |
| GTTTATGCAATGAATGAGCA+AGG | - | chr2_4:5273311-5273330 | None:intergenic | 35.0% | |
| AAGTAGGCAATCTTCAAAGT+AGG | + | chr2_4:5273716-5273735 | Msa0310470:intron | 35.0% | |
| TAAGCTCTTAAGTCTTCATC+GGG | - | chr2_4:5273751-5273770 | None:intergenic | 35.0% | |
| GATGAAGACTTAAGAGCTTA+AGG | + | chr2_4:5273751-5273770 | Msa0310470:intron | 35.0% | |
| ! | TTTTTGTTACCTAGACCTCA+TGG | - | chr2_4:5273837-5273856 | None:intergenic | 35.0% |
| AGTTTGGTCAAGTTACGAAT+TGG | + | chr2_4:5273906-5273925 | Msa0310470:intron | 35.0% | |
| ATACACCTTTAGACCGTTTA+AGG | + | chr2_4:5274129-5274148 | Msa0310470:intron | 35.0% | |
| GCTTGGAGTTTAACCTTAAA+CGG | - | chr2_4:5274145-5274164 | None:intergenic | 35.0% | |
| ! | TCATTTGGTTGATGTAGCTA+AGG | + | chr2_4:5274240-5274259 | Msa0310470:CDS | 35.0% |
| TGGATTTCATCCTAATGAGA+TGG | + | chr2_4:5274358-5274377 | Msa0310470:intron | 35.0% | |
| CTTTGTATGATGGTTCCTAT+AGG | + | chr2_4:5274438-5274457 | Msa0310470:CDS | 35.0% | |
| TGAGATTTACTCTCCTTCTA+AGG | + | chr2_4:5274514-5274533 | Msa0310470:CDS | 35.0% | |
| ! | CTTTGGAAGTTCTAATGTCT+TGG | + | chr2_4:5272625-5272644 | Msa0310470:exon | 35.0% |
| GCTATTGCAAAACAAACGAA+AGG | - | chr2_4:5272674-5272693 | None:intergenic | 35.0% | |
| ATACACAGAAGCTAGTTAAC+TGG | - | chr2_4:5272877-5272896 | None:intergenic | 35.0% | |
| AAGTGAACCACATGAAACTT+CGG | - | chr2_4:5273144-5273163 | None:intergenic | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | - | chr2_4:5273182-5273201 | None:intergenic | 35.0% | |
| GTTTATGCAATGAATGAGCA+AGG | - | chr2_4:5273311-5273330 | None:intergenic | 35.0% | |
| AAGTAGGCAATCTTCAAAGT+AGG | + | chr2_4:5273716-5273735 | Msa0310470:intron | 35.0% | |
| TAAGCTCTTAAGTCTTCATC+GGG | - | chr2_4:5273751-5273770 | None:intergenic | 35.0% | |
| GATGAAGACTTAAGAGCTTA+AGG | + | chr2_4:5273751-5273770 | Msa0310470:intron | 35.0% | |
| ! | TTTTTGTTACCTAGACCTCA+TGG | - | chr2_4:5273837-5273856 | None:intergenic | 35.0% |
| AGTTTGGTCAAGTTACGAAT+TGG | + | chr2_4:5273906-5273925 | Msa0310470:intron | 35.0% | |
| ATACACCTTTAGACCGTTTA+AGG | + | chr2_4:5274129-5274148 | Msa0310470:intron | 35.0% | |
| GCTTGGAGTTTAACCTTAAA+CGG | - | chr2_4:5274145-5274164 | None:intergenic | 35.0% | |
| ! | TCATTTGGTTGATGTAGCTA+AGG | + | chr2_4:5274240-5274259 | Msa0310470:CDS | 35.0% |
| TGGATTTCATCCTAATGAGA+TGG | + | chr2_4:5274358-5274377 | Msa0310470:intron | 35.0% | |
| CTTTGTATGATGGTTCCTAT+AGG | + | chr2_4:5274438-5274457 | Msa0310470:CDS | 35.0% | |
| TGAGATTTACTCTCCTTCTA+AGG | + | chr2_4:5274514-5274533 | Msa0310470:CDS | 35.0% | |
| CAAAGTCGCATATCTTCAGT+TGG | - | chr2_4:5272610-5272629 | None:intergenic | 40.0% | |
| CAACTGAAGATATGCGACTT+TGG | + | chr2_4:5272608-5272627 | Msa0310470:five_prime_UTR | 40.0% | |
| AGAGCTCCTGAGCTTATATT+CGG | + | chr2_4:5272782-5272801 | Msa0310470:CDS | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | + | chr2_4:5272851-5272870 | Msa0310470:CDS | 40.0% |
| ! | AACTAGCTTCTGTGTATGCT+TGG | + | chr2_4:5272880-5272899 | Msa0310470:intron | 40.0% |
| GTTCATTCCGAAGTTTCATG+TGG | + | chr2_4:5273134-5273153 | Msa0310470:intron | 40.0% | |
| CTTGATTTCTTCCCTTGTTG+GGG | - | chr2_4:5273181-5273200 | None:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | - | chr2_4:5273183-5273202 | None:intergenic | 40.0% | |
| GGGATCATAAATGCTGAAGT+AGG | + | chr2_4:5273700-5273719 | Msa0310470:intron | 40.0% | |
| AAACTCATTCCATGAGGTCT+AGG | + | chr2_4:5273825-5273844 | Msa0310470:intron | 40.0% | |
| CATCAGTTACATCAGATGCT+TGG | - | chr2_4:5274162-5274181 | None:intergenic | 40.0% | |
| !!! | TGTTGCTTTTGACACTGACA+TGG | + | chr2_4:5274192-5274211 | Msa0310470:CDS | 40.0% |
| !!! | GTTGCTTTTGACACTGACAT+GGG | + | chr2_4:5274193-5274212 | Msa0310470:CDS | 40.0% |
| AGAATATGGGCCGATAATGT+TGG | + | chr2_4:5274338-5274357 | Msa0310470:intron | 40.0% | |
| GAACCATCATACAAAGCATG+GGG | - | chr2_4:5274434-5274453 | None:intergenic | 40.0% | |
| GGAACCATCATACAAAGCAT+GGG | - | chr2_4:5274435-5274454 | None:intergenic | 40.0% | |
| AGGAACCATCATACAAAGCA+TGG | - | chr2_4:5274436-5274455 | None:intergenic | 40.0% | |
| ATGGTTCCTATAGGGTGATA+AGG | + | chr2_4:5274447-5274466 | Msa0310470:CDS | 40.0% | |
| TGGTTCCTATAGGGTGATAA+GGG | + | chr2_4:5274448-5274467 | Msa0310470:CDS | 40.0% | |
| ACAAACCCTTATCACCCTAT+AGG | - | chr2_4:5274456-5274475 | None:intergenic | 40.0% | |
| !! | GACTGTTTCACTTGATGATG+AGG | + | chr2_4:5274625-5274644 | Msa0310470:CDS | 40.0% |
| ! | TACTGAGAAGATTGTTGGCT+CGG | + | chr2_4:5274655-5274674 | Msa0310470:CDS | 40.0% |
| CAAAGTCGCATATCTTCAGT+TGG | - | chr2_4:5272610-5272629 | None:intergenic | 40.0% | |
| CAACTGAAGATATGCGACTT+TGG | + | chr2_4:5272608-5272627 | Msa0310470:five_prime_UTR | 40.0% | |
| AGAGCTCCTGAGCTTATATT+CGG | + | chr2_4:5272782-5272801 | Msa0310470:CDS | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | + | chr2_4:5272851-5272870 | Msa0310470:CDS | 40.0% |
| ! | AACTAGCTTCTGTGTATGCT+TGG | + | chr2_4:5272880-5272899 | Msa0310470:intron | 40.0% |
| GTTCATTCCGAAGTTTCATG+TGG | + | chr2_4:5273134-5273153 | Msa0310470:intron | 40.0% | |
| CTTGATTTCTTCCCTTGTTG+GGG | - | chr2_4:5273181-5273200 | None:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | - | chr2_4:5273183-5273202 | None:intergenic | 40.0% | |
| GGGATCATAAATGCTGAAGT+AGG | + | chr2_4:5273700-5273719 | Msa0310470:intron | 40.0% | |
| AAACTCATTCCATGAGGTCT+AGG | + | chr2_4:5273825-5273844 | Msa0310470:intron | 40.0% | |
| CATCAGTTACATCAGATGCT+TGG | - | chr2_4:5274162-5274181 | None:intergenic | 40.0% | |
| !!! | TGTTGCTTTTGACACTGACA+TGG | + | chr2_4:5274192-5274211 | Msa0310470:CDS | 40.0% |
| !!! | GTTGCTTTTGACACTGACAT+GGG | + | chr2_4:5274193-5274212 | Msa0310470:CDS | 40.0% |
| AGAATATGGGCCGATAATGT+TGG | + | chr2_4:5274338-5274357 | Msa0310470:intron | 40.0% | |
| GAACCATCATACAAAGCATG+GGG | - | chr2_4:5274434-5274453 | None:intergenic | 40.0% | |
| GGAACCATCATACAAAGCAT+GGG | - | chr2_4:5274435-5274454 | None:intergenic | 40.0% | |
| AGGAACCATCATACAAAGCA+TGG | - | chr2_4:5274436-5274455 | None:intergenic | 40.0% | |
| ATGGTTCCTATAGGGTGATA+AGG | + | chr2_4:5274447-5274466 | Msa0310470:CDS | 40.0% | |
| TGGTTCCTATAGGGTGATAA+GGG | + | chr2_4:5274448-5274467 | Msa0310470:CDS | 40.0% | |
| ACAAACCCTTATCACCCTAT+AGG | - | chr2_4:5274456-5274475 | None:intergenic | 40.0% | |
| !! | GACTGTTTCACTTGATGATG+AGG | + | chr2_4:5274625-5274644 | Msa0310470:CDS | 40.0% |
| ! | TACTGAGAAGATTGTTGGCT+CGG | + | chr2_4:5274655-5274674 | Msa0310470:CDS | 40.0% |
| GTCGCATATCTTCAGTTGGT+GGG | - | chr2_4:5272606-5272625 | None:intergenic | 45.0% | |
| AGTCGCATATCTTCAGTTGG+TGG | - | chr2_4:5272607-5272626 | None:intergenic | 45.0% | |
| GTTGCACCGAATATAAGCTC+AGG | - | chr2_4:5272791-5272810 | None:intergenic | 45.0% | |
| ACCAACTGAGCAGATGTCAA+TGG | - | chr2_4:5272828-5272847 | None:intergenic | 45.0% | |
| TTGTCTACTCCACTCTCACT+AGG | - | chr2_4:5272975-5272994 | None:intergenic | 45.0% | |
| GAGTGGAGTAGACAAACTTG+TGG | + | chr2_4:5272980-5272999 | Msa0310470:CDS | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | + | chr2_4:5273146-5273165 | Msa0310470:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | + | chr2_4:5273153-5273172 | Msa0310470:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | + | chr2_4:5273166-5273185 | Msa0310470:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | + | chr2_4:5273167-5273186 | Msa0310470:intron | 45.0% |
| GTCGCATATCTTCAGTTGGT+GGG | - | chr2_4:5272606-5272625 | None:intergenic | 45.0% | |
| AGTCGCATATCTTCAGTTGG+TGG | - | chr2_4:5272607-5272626 | None:intergenic | 45.0% | |
| GTTGCACCGAATATAAGCTC+AGG | - | chr2_4:5272791-5272810 | None:intergenic | 45.0% | |
| ACCAACTGAGCAGATGTCAA+TGG | - | chr2_4:5272828-5272847 | None:intergenic | 45.0% | |
| TTGTCTACTCCACTCTCACT+AGG | - | chr2_4:5272975-5272994 | None:intergenic | 45.0% | |
| GAGTGGAGTAGACAAACTTG+TGG | + | chr2_4:5272980-5272999 | Msa0310470:CDS | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | + | chr2_4:5273146-5273165 | Msa0310470:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | + | chr2_4:5273153-5273172 | Msa0310470:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | + | chr2_4:5273166-5273185 | Msa0310470:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | + | chr2_4:5273167-5273186 | Msa0310470:intron | 45.0% |
| !! | AAAAAAATAAAAATGAAAAT+AGG | + | chr2_4:5273937-5273956 | Msa0310470:intron | 5.0% |
| !! | AAAAAATAAAAATGAAAATA+GGG | + | chr2_4:5273938-5273957 | Msa0310470:intron | 5.0% |
| !! | AAAAAAATAAAAATGAAAAT+AGG | + | chr2_4:5273937-5273956 | Msa0310470:intron | 5.0% |
| !! | AAAAAATAAAAATGAAAATA+GGG | + | chr2_4:5273938-5273957 | Msa0310470:intron | 5.0% |
| TGAGCAGATGTCAATGGCTG+TGG | - | chr2_4:5272822-5272841 | None:intergenic | 50.0% | |
| GCCATTGACATCTGCTCAGT+TGG | + | chr2_4:5272824-5272843 | Msa0310470:CDS | 50.0% | |
| TGCTCAGTTGGTTGCGTACT+TGG | + | chr2_4:5272836-5272855 | Msa0310470:CDS | 50.0% | |
| CCACTCTCACTAGGAAACAG+TGG | - | chr2_4:5272966-5272985 | None:intergenic | 50.0% | |
| CCACTGTTTCCTAGTGAGAG+TGG | + | chr2_4:5272963-5272982 | Msa0310470:CDS | 50.0% | |
| CTTAAGTCTTCATCGGGTGG+AGG | - | chr2_4:5273745-5273764 | None:intergenic | 50.0% | |
| GCTCTTAAGTCTTCATCGGG+TGG | - | chr2_4:5273748-5273767 | None:intergenic | 50.0% | |
| GGACCCCATGCTTTGTATGA+TGG | + | chr2_4:5274428-5274447 | Msa0310470:CDS | 50.0% | |
| TGAGCAGATGTCAATGGCTG+TGG | - | chr2_4:5272822-5272841 | None:intergenic | 50.0% | |
| GCCATTGACATCTGCTCAGT+TGG | + | chr2_4:5272824-5272843 | Msa0310470:CDS | 50.0% | |
| TGCTCAGTTGGTTGCGTACT+TGG | + | chr2_4:5272836-5272855 | Msa0310470:CDS | 50.0% | |
| CCACTCTCACTAGGAAACAG+TGG | - | chr2_4:5272966-5272985 | None:intergenic | 50.0% | |
| CCACTGTTTCCTAGTGAGAG+TGG | + | chr2_4:5272963-5272982 | Msa0310470:CDS | 50.0% | |
| CTTAAGTCTTCATCGGGTGG+AGG | - | chr2_4:5273745-5273764 | None:intergenic | 50.0% | |
| GCTCTTAAGTCTTCATCGGG+TGG | - | chr2_4:5273748-5273767 | None:intergenic | 50.0% | |
| GGACCCCATGCTTTGTATGA+TGG | + | chr2_4:5274428-5274447 | Msa0310470:CDS | 50.0% | |
| ! | GGTTGATGCTTCGCAGACTG+AGG | + | chr2_4:5274676-5274695 | Msa0310470:CDS | 55.0% |
| ! | GGTTGATGCTTCGCAGACTG+AGG | + | chr2_4:5274676-5274695 | Msa0310470:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5272573 | 5274712 | 5272573 | ID=Msa0310470;Name=Msa0310470 |
| chr2_4 | mRNA | 5272573 | 5274712 | 5272573 | ID=Msa0310470-mRNA-1;Parent=Msa0310470;Name=Msa0310470-mRNA-1;_AED=0.58;_eAED=0.58;_QI=66|0.16|0.14|0.57|0.83|0.85|7|0|209 |
| chr2_4 | exon | 5272573 | 5272646 | 5272573 | ID=Msa0310470-mRNA-1:exon:1867;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5272736 | 5272892 | 5272736 | ID=Msa0310470-mRNA-1:exon:1868;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5272963 | 5273013 | 5272963 | ID=Msa0310470-mRNA-1:exon:1869;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5273168 | 5273223 | 5273168 | ID=Msa0310470-mRNA-1:exon:1870;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5274141 | 5274261 | 5274141 | ID=Msa0310470-mRNA-1:exon:1871;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5274392 | 5274535 | 5274392 | ID=Msa0310470-mRNA-1:exon:1872;Parent=Msa0310470-mRNA-1 |
| chr2_4 | exon | 5274620 | 5274712 | 5274620 | ID=Msa0310470-mRNA-1:exon:1873;Parent=Msa0310470-mRNA-1 |
| chr2_4 | five_prime_UTR | 5272573 | 5272638 | 5272573 | ID=Msa0310470-mRNA-1:five_prime_utr;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5272639 | 5272646 | 5272639 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5272736 | 5272892 | 5272736 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5272963 | 5273013 | 5272963 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5273168 | 5273223 | 5273168 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5274141 | 5274261 | 5274141 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5274392 | 5274535 | 5274392 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| chr2_4 | CDS | 5274620 | 5274712 | 5274620 | ID=Msa0310470-mRNA-1:cds;Parent=Msa0310470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
