AlfalfaGEDB | Msa0310890

M. sativa cultivar zhongmu-4 / Msa0310890

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310890	XP_003593274.2	87.763	760	15	6	1	686	3	758	0.0	1296

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310890	sp\|Q9LMN7\|WAK5_ARATH	39.015	751	342	22	14	679	6	725	1.36e-159	480

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310890	MtrunA17_Chr2g0279661	87.763	760	15	6	1	686	3	758	0.0	1296
Msa0310890	MtrunA17_Chr3g0125431	70.565	761	145	4	1	686	1	757	0.0	1089
Msa0310890	MtrunA17_Chr3g0125441	64.185	779	180	8	1	686	15	787	0.0	984
Msa0310890	MtrunA17_Chr3g0125451	65.303	758	169	13	10	686	7	751	0.0	930
Msa0310890	MtrunA17_Chr3g0125461	65.162	709	164	8	1	636	23	721	0.0	902
Msa0310890	MtrunA17_Chr3g0125471	55.541	749	173	10	1	674	1	664	0.0	748
Msa0310890	MtrunA17_Chr1g0158201	40.301	732	324	18	11	660	14	714	6.03e-169	502
Msa0310890	MtrunA17_Chr1g0158261	40.079	756	320	21	7	674	9	719	3.15e-167	497
Msa0310890	MtrunA17_Chr1g0158251	39.276	746	339	18	11	674	15	728	8.92e-166	494
Msa0310890	MtrunA17_Chr1g0148501	38.688	747	343	18	7	657	2	729	2.89e-162	485

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0310890	AT1G21230.1	39.015	751	342	22	14	679	6	725	1.39e-160	480
Msa0310890	AT1G21240.1	38.851	731	328	20	14	653	7	709	1.21e-156	470
Msa0310890	AT1G21270.1	37.616	755	360	20	14	686	7	732	2.53e-156	469
Msa0310890	AT1G21250.1	37.790	733	327	23	14	653	7	703	1.76e-147	447
Msa0310890	AT1G21210.1	35.246	732	362	19	7	653	2	706	3.24e-137	420
Msa0310890	AT1G16130.1	33.426	718	339	21	12	631	13	689	6.22e-112	355
Msa0310890	AT1G69730.1	32.443	749	323	21	20	631	19	721	4.92e-107	343
Msa0310890	AT1G16120.1	33.012	727	353	22	8	631	7	702	1.32e-102	330
Msa0310890	AT1G79680.1	32.713	752	330	26	33	653	26	732	6.99e-101	326
Msa0310890	AT1G16150.1	31.464	731	356	20	7	631	6	697	1.20e-100	325

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Find 164 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGATTACAATGTCAT+TGG	0.414117	2_4:-5698375	Msa0310890:CDS
AAACCCTAGTGCAAGGGACA+TGG	0.509428	2_4:-5698851	Msa0310890:CDS
AAACTGTTCCCTGACCACCT+TGG	0.622674	2_4:+5699307	None:intergenic
AAAGTATCCTTTGTTACCGT+AGG	0.583022	2_4:-5701271	Msa0310890:CDS
AACAACTAGTGAGGCATAGA+GGG	0.574519	2_4:-5699410	Msa0310890:CDS
AACCACCAAGGATTGTTCCT+TGG	0.456002	2_4:-5701701	Msa0310890:CDS
AACCCTAGTGCAAGGGACAT+GGG	0.539863	2_4:-5698850	Msa0310890:CDS
AACGTGCCAGCAAGCTCAGA+AGG	0.576419	2_4:-5701095	Msa0310890:CDS
AACTAAAGTCTTCACTGTTG+AGG	0.571869	2_4:-5699376	Msa0310890:CDS
AAGAAACAAAGTACAATGCA+AGG	0.569515	2_4:+5698690	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAACAGGTTTAATGATATTG+TGG	-	chr2_4:5698846-5698865	Msa0310890:intron	30.0%
TCTTGCAAATTATGCATGTA+AGG	-	chr2_4:5699134-5699153	Msa0310890:intron	30.0%
CACACAAATGACTCAAAAAT+AGG	+	chr2_4:5699292-5699311	None:intergenic	30.0%
ATTTGTGTGATTCTTCTCAA+GGG	-	chr2_4:5699303-5699322	Msa0310890:CDS	30.0%
GTCATATGTAATTACAGAGA+CGG	+	chr2_4:5699620-5699639	None:intergenic	30.0%
GGGTCTATATAAATAGCATA+AGG	-	chr2_4:5699818-5699837	Msa0310890:intron	30.0%
CGTAACTCTCTATATTGTAT+TGG	-	chr2_4:5699888-5699907	Msa0310890:CDS	30.0%
AGTCATAAGACTTAATCCAT+GGG	+	chr2_4:5699962-5699981	None:intergenic	30.0%
AAGTGATTAAAGAAGAGAGA+AGG	+	chr2_4:5700016-5700035	None:intergenic	30.0%
AGAAAACTAAACAAGCAAAC+CGG	+	chr2_4:5700039-5700058	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	5698361	5701866	5698361	ID=Msa0310890;Name=Msa0310890
chr2_4	mRNA	5698361	5701866	5698361	ID=Msa0310890-mRNA-1;Parent=Msa0310890;Name=Msa0310890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.25\|0\|1\|1\|1\|5\|0\|686
chr2_4	exon	5700969	5701866	5700969	ID=Msa0310890-mRNA-1:exon:2178;Parent=Msa0310890-mRNA-1
chr2_4	exon	5699859	5700041	5699859	ID=Msa0310890-mRNA-1:exon:2177;Parent=Msa0310890-mRNA-1
chr2_4	exon	5699253	5699558	5699253	ID=Msa0310890-mRNA-1:exon:2176;Parent=Msa0310890-mRNA-1
chr2_4	exon	5698849	5699152	5698849	ID=Msa0310890-mRNA-1:exon:2175;Parent=Msa0310890-mRNA-1
chr2_4	exon	5698361	5698730	5698361	ID=Msa0310890-mRNA-1:exon:2174;Parent=Msa0310890-mRNA-1
chr2_4	CDS	5700969	5701866	5700969	ID=Msa0310890-mRNA-1:cds;Parent=Msa0310890-mRNA-1
chr2_4	CDS	5699859	5700041	5699859	ID=Msa0310890-mRNA-1:cds;Parent=Msa0310890-mRNA-1
chr2_4	CDS	5699253	5699558	5699253	ID=Msa0310890-mRNA-1:cds;Parent=Msa0310890-mRNA-1
chr2_4	CDS	5698849	5699152	5698849	ID=Msa0310890-mRNA-1:cds;Parent=Msa0310890-mRNA-1
chr2_4	CDS	5698361	5698730	5698361	ID=Msa0310890-mRNA-1:cds;Parent=Msa0310890-mRNA-1

Gene Sequence

>Msa0310890

ATGGCTGTGGCCTCAAATCAGTTGCTGCAGCTGGTAGTTGTTGTTGTTGCTGCGGTATTTTTTGCAAAAGCAACAACTCAGCAACTATCTCTCCCAAACTGCACAACAAAGTGTGGCTCTGTCACAATTCCCTTTCCATTTGGAACCACCAAGGATTGTTCCTTGGACAACACCTTTCTCATCAATTGCACCAAAGCATCTTCTTCTTCAACCTCAACACATATACCTTTCCTGCCACGTACTAATCAAACTGTTCTAAACATCTCGCTTGATGGTGAACTACGCGTTGCATGGCCAGTAGCCAGCGATTGCTACGACGAAAAGAGTATACAGGTGAACCAATCATTTTGGGGTATCAGAATGACACATTTTCCAGTCTCGTCAACTCGAAACAAGTTCGTCGCCGTTGGCTGTGACACGATTGCAATACTAGCAGCATTTGATTTTGGGGGAAACAACTACACCACAGGATGTTTGGCTTTGTGCAACAGGTTTAATGATATTGTGGCCAATGAATCTTGCTCTGGCACTGGTTGTTGTCAGATTTCAATACCCCAAGGTCATTTGTTCGAGAAAGTATCCTTTGTTACCGTAGGTGCATTCAACAATCACTCAGCGGTACATGACTTCAATCCTTGTGGTTATGCTTTTTTTGTTGAAAATGGAGCCTACACCTTCGAATCCACGGACCTCCTCAAGTTGGAGAAGAAGGAATTTCCTGTGTTGTTGGACTGGGCAGTAGGGAACCAAACGTGCCAGCAAGCTCAGAAGGATCTTGCAAATTATGCATGTAAGGACAACAAAAGTACATGTTACAATGCACCTGAGAAATCTGGTTACCTTTGCAGATGCCTTCATGGATATAGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGAGTCCAATGACTGTGTTGAGGAAGCAATATGCACCAATCTTCCTGGAAGCTACCAGTGTTTATGTCCGGCAGAATATGAGGGAAACGGGAAGATGAATGGAACAAAATGCAGTCCAAAATCCAATACCAAGTCAAGGAAAGAGATCATAATGATCATTGCAATGAGTGTCAGCATGAGCCTTGTAGCACTACTGGTTGGAAGCTTTTATGCGTATTTGGCATTAAAGAAAAGAAAGCTCATTAAACTGAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTGTTACAACAACAACTAGTGAGGCATAGAGGGTCAACTGAAACAACTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAGGCAAGATTCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATTAAGAAGTCCAAAATCAAGACAGAAGTTCCTTTACTTGTTTATGAATTCATTCCCAATGGTACTGTTTATGAGCATCTTCATGATCATAATCCAACTTTAAAGCTTACGTGGAAAACAAGACTGAGAATAGCAAAAGAAACTGCTGGAGTCCTAGCATACTTGCATTCTGCTGCATCTACACCAATCATACATAGAGATGTGAAATCTTCAAACATACTCCTAGATCGCAATCTCACAGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGTCAGATAAAAACCCTAGTGCAAGGGACATGGGGGCCAGAGTTAGATAGAAACCTTGCATTGTACTTTGTTTCTTCAATGAAAGATGGTCAATTACTTGATATTTTGGACAAAAATATTGATGAGGCGAACATTGAGCAACTAAAGGAAGTTGCCCTTATTGCAGAAAGGTGTTTACGGGTGAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTGGAGGGAATATTAGTTATTGAAGAGCACCGTTGGGGAAGTGGAAATCAGTCTTCAGAAGAGACTGATACATTGCTCAGAACAGCGTCACCGATTATCATTGTTACAGATGGTGGCAACAATTCTTCTGACTCATATAGCATAAACCAGATTACAATGTCATTGGTTGGTGGAAGATGA

Protein sequence

>Msa0310890

MAVASNQLLQLVVVVVAAVFFAKATTQQLSLPNCTTKCGSVTIPFPFGTTKDCSLDNTFLINCTKASSSSTSTHIPFLPRTNQTVLNISLDGELRVAWPVASDCYDEKSIQVNQSFWGIRMTHFPVSSTRNKFVAVGCDTIAILAAFDFGGNNYTTGCLALCNRFNDIVANESCSGTGCCQISIPQGHLFEKVSFVTVGAFNNHSAVHDFNPCGYAFFVENGAYTFESTDLLKLEKKEFPVLLDWAVGNQTCQQAQKDLANYACKDNKSTCYNAPEKSGYLCRCLHGYRGNPYLIHGCQDINECMESNDCVEEAICTNLPGSYQCLCPAEYEGNGKMNGTKCSPKSNTKSRKEIIMIIAMSVSMSLVALLVGSFYAYLALKKRKLIKLKEQFFQQNGGLLLQQQLVRHRGSTETTKVFTVEELNEATNNFDEGKILGQGGQGTVYKGVLQDKRIVAIKKSKIKTEVPLLVYEFIPNGTVYEHLHDHNPTLKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSSNILLDRNLTAKVSDFGASRIVPLDHSQIKTLVQGTWGPELDRNLALYFVSSMKDGQLLDILDKNIDEANIEQLKEVALIAERCLRVKGEERPTMKEVAMELEGILVIEEHRWGSGNQSSEETDTLLRTASPIIIVTDGGNNSSDSYSINQITMSLVGGR*