AlfalfaGEDB | Msa0311450

M. sativa cultivar zhongmu-4 / Msa0311450

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311450	XP_003593377.1	90.499	421	36	2	1	419	1	419	0.0	669

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311450	sp\|Q9SYA9\|STKLD_ARATH	33.807	352	173	16	85	417	62	372	1.24e-26	113

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0311450	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311450	MtrunA17_Chr2g0280431	90.499	421	36	2	1	419	1	419	0.0	669
Msa0311450	MtrunA17_Chr4g0061741	54.430	158	65	4	233	388	114	266	5.46e-39	141
Msa0311450	MtrunA17_Chr3g0113131	36.667	300	150	10	124	405	85	362	1.65e-35	134
Msa0311450	MtrunA17_Chr7g0273821	30.719	153	83	4	150	291	68	208	2.32e-13	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311450	AT1G61730.1	33.807	352	173	16	85	417	62	372	1.26e-27	113
Msa0311450	AT4G00390.1	32.277	347	180	14	70	407	55	355	1.32e-24	104
Msa0311450	AT1G11510.1	31.818	374	182	17	57	405	14	339	1.08e-20	93.2
Msa0311450	AT1G11510.2	29.945	364	173	14	57	405	14	310	1.69e-18	86.3
Msa0311450	AT4G25210.1	26.979	341	172	12	110	412	63	364	9.92e-15	75.5
Msa0311450	AT1G66420.1	35.821	134	69	4	158	287	53	173	3.41e-14	73.2
Msa0311450	AT2G01370.1	37.500	112	54	3	183	286	66	169	2.59e-13	70.1
Msa0311450	AT1G44810.1	32.117	137	69	3	155	287	93	209	1.04e-12	68.9
Msa0311450	AT4G01260.1	28.723	282	149	8	155	409	57	313	5.68e-12	67.0
Msa0311450	AT5G14280.1	42.105	95	45	3	206	290	63	157	2.33e-11	64.7

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Find 114 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACCGGTGGTGGTGG+TGG	0.499529	2_4:-6316486	Msa0311450:CDS
AAAAGCGGTTTGGAATTGAT+GGG	0.574547	2_4:-6315910	Msa0311450:CDS
AAACCCGCTGAATCTGAATC+CGG	0.523805	2_4:-6316735	Msa0311450:CDS
AAAGCGGTTTGGAATTGATG+GGG	0.621162	2_4:-6315909	Msa0311450:CDS
AAATGGTGGTTCTGCTAGGA+AGG	0.513798	2_4:-6316061	Msa0311450:CDS
AACCGAATCTGATTCTGAAC+CGG	0.455116	2_4:-6316688	Msa0311450:CDS
AAGAAAACCACCGGTGGTGG+TGG	0.529398	2_4:-6316489	Msa0311450:CDS
AAGAAGAAAACCACCGGTGG+TGG	0.515031	2_4:-6316492	Msa0311450:CDS
AAGAAGAAATCAAGCAAATA+GGG	0.379593	2_4:-6315766	None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG	0.240022	2_4:+6316634	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAATGAAAGTGGAAAAG+TGG	-	chr2_4:6316754-6316773	Msa0311450:CDS	30.0%
ATTCAAAAACACTTCCATCT+CGG	+	chr2_4:6316942-6316961	None:intergenic	30.0%
TAAGAATGAAAGTGGAAAAG+TGG	-	chr2_4:6316754-6316773	Msa0311450:CDS	30.0%
ATTCAAAAACACTTCCATCT+CGG	+	chr2_4:6316942-6316961	None:intergenic	30.0%
AGGATGAATCTTCATCTTCT+TGG	+	chr2_4:6315884-6315903	None:intergenic	35.0%
TTGTGATTCTCAAAGGACTT+GGG	-	chr2_4:6316408-6316427	Msa0311450:CDS	35.0%
TTGGAGCAAAATTGCTTCTA+AGG	-	chr2_4:6316625-6316644	Msa0311450:CDS	35.0%
TCTAAGGAAGCTGAAGAAAA+CGG	-	chr2_4:6316641-6316660	Msa0311450:CDS	35.0%
AAGGAAGCTCCTGTTAAAAA+TGG	-	chr2_4:6316698-6316717	Msa0311450:CDS	35.0%
CGAACTGGTTAAATTTGATG+AGG	-	chr2_4:6316808-6316827	Msa0311450:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	6315768	6317030	6315768	ID=Msa0311450;Name=Msa0311450
chr2_4	mRNA	6315768	6317030	6315768	ID=Msa0311450-mRNA-1;Parent=Msa0311450;Name=Msa0311450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|420
chr2_4	exon	6315768	6317030	6315768	ID=Msa0311450-mRNA-1:exon:2422;Parent=Msa0311450-mRNA-1
chr2_4	CDS	6315768	6317030	6315768	ID=Msa0311450-mRNA-1:cds;Parent=Msa0311450-mRNA-1

Gene Sequence

>Msa0311450

ATGGCGCCAAAGCCAAAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCAGACAAAGTAGTCAACCAAGAAGATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCTGAAGAAGAAGAAGATAATCAAACTCAACAAACTCCTTCAAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCTGATTCTGAACCGGAACAGAAATCGGAACCCACTCCACCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAACCCAATCAACTCCGGTGCCGACCAAGTCCGGAACTAAGCGTGCCGCCGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGACGAGCTTGTGATTCTCAAAGGACTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAATTGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGTAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTGCAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG

Protein sequence

>Msa0311450

MAPKPKKRLALVDDPPTASSSDEDQPPSTQKPADKVVNQEDEDSSSEEEGDGEEEGSSSEEEEDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQTQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKIASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDAAKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK*