Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312130 | XP_039685680.1 | 81.101 | 799 | 97 | 5 | 1 | 745 | 1 | 799 | 0.0 | 1302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312130 | sp|Q9SZL8|FRS5_ARATH | 25.984 | 635 | 373 | 14 | 27 | 631 | 70 | 637 | 1.66e-57 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0312130 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312130 | MtrunA17_Chr3g0088371 | 84.239 | 184 | 26 | 1 | 584 | 764 | 1 | 184 | 8.44e-105 | 319 |
| Msa0312130 | MtrunA17_Chr3g0082121 | 30.682 | 704 | 379 | 19 | 16 | 693 | 35 | 655 | 2.11e-92 | 304 |
| Msa0312130 | MtrunA17_Chr2g0324011 | 29.764 | 635 | 341 | 14 | 31 | 631 | 8 | 571 | 6.34e-88 | 289 |
| Msa0312130 | MtrunA17_Chr1g0202341 | 27.466 | 659 | 372 | 17 | 3 | 628 | 24 | 609 | 9.47e-69 | 239 |
| Msa0312130 | MtrunA17_Chr6g0458391 | 27.023 | 618 | 349 | 16 | 33 | 628 | 228 | 765 | 4.03e-63 | 225 |
| Msa0312130 | MtrunA17_Chr8g0363841 | 26.761 | 639 | 370 | 15 | 23 | 631 | 10 | 580 | 1.50e-62 | 222 |
| Msa0312130 | MtrunA17_Chr1g0203721 | 25.936 | 721 | 407 | 23 | 35 | 705 | 68 | 711 | 2.42e-62 | 225 |
| Msa0312130 | MtrunA17_Chr5g0448761 | 23.688 | 705 | 432 | 14 | 27 | 694 | 57 | 692 | 1.17e-58 | 213 |
| Msa0312130 | MtrunA17_Chr2g0296781 | 26.215 | 679 | 386 | 21 | 34 | 674 | 1 | 602 | 3.37e-58 | 211 |
| Msa0312130 | MtrunA17_Chr6g0477261 | 29.314 | 481 | 282 | 14 | 192 | 665 | 53 | 482 | 1.15e-55 | 202 |
| Msa0312130 | MtrunA17_Chr1g0164591 | 34.185 | 313 | 176 | 5 | 126 | 414 | 1 | 307 | 1.28e-55 | 194 |
| Msa0312130 | MtrunA17_Chr2g0287651 | 24.441 | 626 | 370 | 14 | 34 | 628 | 79 | 632 | 3.74e-51 | 192 |
| Msa0312130 | MtrunA17_Chr5g0441581 | 23.491 | 762 | 463 | 23 | 14 | 739 | 12 | 689 | 1.05e-50 | 189 |
| Msa0312130 | MtrunA17_Chr2g0329031 | 24.804 | 637 | 372 | 18 | 15 | 624 | 1 | 557 | 2.10e-50 | 189 |
| Msa0312130 | MtrunA17_Chr1g0207551 | 24.390 | 697 | 402 | 19 | 27 | 684 | 31 | 641 | 3.69e-50 | 189 |
| Msa0312130 | MtrunA17_Chr5g0440451 | 23.695 | 709 | 403 | 19 | 29 | 687 | 42 | 662 | 7.01e-50 | 189 |
| Msa0312130 | MtrunA17_Chr3g0118611 | 27.485 | 513 | 305 | 13 | 181 | 685 | 104 | 557 | 7.99e-50 | 187 |
| Msa0312130 | MtrunA17_Chr1g0172971 | 78.632 | 117 | 19 | 2 | 1 | 111 | 1 | 117 | 1.68e-49 | 182 |
| Msa0312130 | MtrunA17_Chr3g0080351 | 23.796 | 706 | 443 | 16 | 29 | 718 | 75 | 701 | 2.05e-47 | 181 |
| Msa0312130 | MtrunA17_Chr1g0198761 | 25.617 | 648 | 363 | 18 | 22 | 626 | 39 | 610 | 2.89e-46 | 177 |
| Msa0312130 | MtrunA17_Chr2g0287061 | 24.462 | 650 | 369 | 22 | 36 | 660 | 189 | 741 | 1.67e-43 | 169 |
| Msa0312130 | MtrunA17_Chr1g0196541 | 23.974 | 609 | 396 | 15 | 34 | 628 | 1 | 556 | 3.53e-43 | 167 |
| Msa0312130 | MtrunA17_Chr7g0258861 | 33.442 | 308 | 152 | 8 | 31 | 304 | 8 | 296 | 3.43e-42 | 155 |
| Msa0312130 | MtrunA17_Chr2g0290391 | 24.888 | 667 | 369 | 18 | 8 | 626 | 29 | 611 | 4.31e-42 | 163 |
| Msa0312130 | MtrunA17_Chr2g0276841 | 24.724 | 635 | 355 | 21 | 44 | 636 | 84 | 637 | 1.60e-39 | 155 |
| Msa0312130 | MtrunA17_Chr5g0448511 | 23.725 | 451 | 291 | 9 | 183 | 631 | 1 | 400 | 1.85e-39 | 154 |
| Msa0312130 | MtrunA17_Chr1g0203051 | 21.732 | 589 | 365 | 11 | 45 | 603 | 94 | 616 | 2.94e-39 | 154 |
| Msa0312130 | MtrunA17_Chr2g0291591 | 25.214 | 468 | 284 | 11 | 32 | 465 | 66 | 501 | 8.86e-38 | 149 |
| Msa0312130 | MtrunA17_Chr2g0291581 | 23.053 | 642 | 396 | 16 | 16 | 628 | 49 | 621 | 2.00e-36 | 146 |
| Msa0312130 | MtrunA17_Chr5g0431001 | 26.889 | 450 | 257 | 14 | 35 | 439 | 66 | 488 | 3.27e-34 | 137 |
| Msa0312130 | MtrunA17_Chr2g0294841 | 25.115 | 653 | 368 | 23 | 14 | 623 | 29 | 603 | 2.96e-33 | 137 |
| Msa0312130 | MtrunA17_Chr6g0475591 | 81.818 | 44 | 8 | 0 | 183 | 226 | 30 | 73 | 4.71e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312130 | AT4G38180.1 | 25.984 | 635 | 373 | 14 | 27 | 631 | 70 | 637 | 1.68e-58 | 213 |
| Msa0312130 | AT4G15090.1 | 26.145 | 524 | 321 | 9 | 187 | 707 | 218 | 678 | 3.57e-54 | 201 |
| Msa0312130 | AT4G15090.5 | 26.145 | 524 | 321 | 9 | 187 | 707 | 218 | 678 | 3.57e-54 | 201 |
| Msa0312130 | AT4G15090.3 | 26.145 | 524 | 321 | 9 | 187 | 707 | 218 | 678 | 3.57e-54 | 201 |
| Msa0312130 | AT4G15090.2 | 26.145 | 524 | 321 | 9 | 187 | 707 | 218 | 678 | 3.57e-54 | 201 |
| Msa0312130 | AT4G15090.4 | 26.145 | 524 | 321 | 9 | 187 | 707 | 218 | 678 | 3.57e-54 | 201 |
| Msa0312130 | AT2G27110.2 | 23.966 | 701 | 425 | 18 | 4 | 685 | 23 | 634 | 1.69e-48 | 184 |
| Msa0312130 | AT2G27110.1 | 23.966 | 701 | 425 | 18 | 4 | 685 | 23 | 634 | 1.69e-48 | 184 |
| Msa0312130 | AT2G27110.3 | 26.087 | 506 | 317 | 11 | 182 | 685 | 39 | 489 | 1.12e-47 | 181 |
| Msa0312130 | AT3G06250.2 | 24.754 | 610 | 353 | 16 | 29 | 627 | 189 | 703 | 8.84e-47 | 179 |
| Msa0312130 | AT3G06250.1 | 24.754 | 610 | 353 | 16 | 29 | 627 | 189 | 703 | 8.84e-47 | 179 |
| Msa0312130 | AT3G06250.3 | 24.754 | 610 | 353 | 16 | 29 | 627 | 189 | 703 | 8.84e-47 | 179 |
| Msa0312130 | AT1G76320.3 | 23.958 | 672 | 396 | 19 | 45 | 686 | 12 | 598 | 5.07e-45 | 172 |
| Msa0312130 | AT3G22170.2 | 21.662 | 734 | 471 | 18 | 4 | 719 | 44 | 691 | 5.16e-45 | 174 |
| Msa0312130 | AT3G22170.1 | 21.662 | 734 | 471 | 18 | 4 | 719 | 44 | 691 | 5.16e-45 | 174 |
| Msa0312130 | AT1G76320.2 | 23.958 | 672 | 396 | 19 | 45 | 686 | 12 | 598 | 9.86e-45 | 172 |
| Msa0312130 | AT1G76320.1 | 23.958 | 672 | 396 | 19 | 45 | 686 | 12 | 598 | 1.16e-44 | 172 |
| Msa0312130 | AT1G76320.4 | 23.958 | 672 | 396 | 19 | 45 | 686 | 12 | 598 | 1.16e-44 | 172 |
| Msa0312130 | AT5G18960.2 | 24.556 | 619 | 360 | 18 | 22 | 627 | 203 | 727 | 9.25e-41 | 160 |
| Msa0312130 | AT5G18960.1 | 24.556 | 619 | 360 | 18 | 22 | 627 | 203 | 727 | 9.25e-41 | 160 |
| Msa0312130 | AT2G32250.5 | 23.464 | 716 | 431 | 21 | 1 | 709 | 17 | 622 | 2.65e-40 | 159 |
| Msa0312130 | AT2G32250.6 | 23.603 | 716 | 430 | 21 | 1 | 709 | 17 | 622 | 4.70e-40 | 159 |
| Msa0312130 | AT2G32250.1 | 23.603 | 716 | 430 | 21 | 1 | 709 | 17 | 622 | 4.70e-40 | 159 |
| Msa0312130 | AT2G32250.3 | 23.603 | 716 | 430 | 21 | 1 | 709 | 17 | 622 | 4.70e-40 | 159 |
| Msa0312130 | AT2G32250.2 | 23.603 | 716 | 430 | 21 | 1 | 709 | 17 | 622 | 5.90e-40 | 158 |
| Msa0312130 | AT2G32250.4 | 23.603 | 716 | 430 | 21 | 1 | 709 | 17 | 622 | 5.90e-40 | 158 |
| Msa0312130 | AT4G38170.1 | 24.099 | 444 | 279 | 11 | 188 | 628 | 11 | 399 | 7.08e-40 | 155 |
| Msa0312130 | AT2G32250.8 | 23.958 | 672 | 402 | 20 | 45 | 709 | 12 | 581 | 3.24e-39 | 156 |
| Msa0312130 | AT2G32250.7 | 23.958 | 672 | 402 | 20 | 45 | 709 | 12 | 581 | 3.52e-39 | 155 |
| Msa0312130 | AT1G10240.2 | 23.633 | 622 | 356 | 18 | 44 | 625 | 62 | 604 | 4.07e-36 | 145 |
| Msa0312130 | AT1G10240.1 | 23.633 | 622 | 356 | 18 | 44 | 625 | 62 | 604 | 4.07e-36 | 145 |
| Msa0312130 | AT5G28530.1 | 23.161 | 639 | 365 | 18 | 35 | 626 | 60 | 619 | 8.33e-35 | 142 |
| Msa0312130 | AT5G28530.3 | 23.484 | 643 | 354 | 20 | 35 | 626 | 60 | 615 | 2.87e-34 | 140 |
| Msa0312130 | AT5G28530.2 | 23.484 | 643 | 354 | 20 | 35 | 626 | 60 | 615 | 2.87e-34 | 140 |
| Msa0312130 | AT1G80010.1 | 23.259 | 632 | 375 | 20 | 36 | 628 | 101 | 661 | 8.55e-34 | 139 |
| Msa0312130 | AT1G52520.1 | 21.340 | 642 | 409 | 16 | 9 | 628 | 71 | 638 | 5.39e-29 | 124 |
| Msa0312130 | AT4G19990.3 | 24.700 | 417 | 294 | 9 | 36 | 449 | 27 | 426 | 1.34e-27 | 119 |
| Msa0312130 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 557 | 687 | 495 | 615 | 1.83e-12 | 71.6 |
| Msa0312130 | AT4G19990.4 | 24.700 | 417 | 294 | 9 | 36 | 449 | 27 | 426 | 1.34e-27 | 119 |
| Msa0312130 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 557 | 687 | 495 | 615 | 1.83e-12 | 71.6 |
| Msa0312130 | AT4G19990.5 | 24.700 | 417 | 294 | 9 | 36 | 449 | 27 | 426 | 1.36e-27 | 119 |
| Msa0312130 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 557 | 687 | 495 | 615 | 1.89e-12 | 71.2 |
| Msa0312130 | AT4G19990.7 | 24.700 | 417 | 294 | 9 | 36 | 449 | 41 | 440 | 1.49e-27 | 119 |
| Msa0312130 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 557 | 687 | 509 | 629 | 2.00e-12 | 71.2 |
| Msa0312130 | AT4G19990.6 | 24.700 | 417 | 294 | 9 | 36 | 449 | 27 | 426 | 2.01e-27 | 119 |
| Msa0312130 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 557 | 687 | 495 | 615 | 1.92e-12 | 71.2 |
| Msa0312130 | AT4G19990.2 | 24.700 | 417 | 294 | 9 | 36 | 449 | 27 | 426 | 2.01e-27 | 119 |
| Msa0312130 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 557 | 687 | 495 | 615 | 1.92e-12 | 71.2 |
| Msa0312130 | AT4G19990.1 | 25.134 | 374 | 259 | 7 | 79 | 449 | 14 | 369 | 5.60e-25 | 111 |
| Msa0312130 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 557 | 687 | 438 | 558 | 1.86e-12 | 71.2 |
Find 111 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 2_4:-7192045 | Msa0312130:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 2_4:+7190910 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_4:-7191778 | Msa0312130:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 2_4:-7192326 | Msa0312130:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 2_4:-7193633 | Msa0312130:CDS |
| TATGGTTTGAAGTTTCTTAT+TGG | 0.229530 | 2_4:+7192199 | None:intergenic |
| ACCAGCCTGGTCTGTGAATA+TGG | 0.276073 | 2_4:+7192181 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 2_4:-7192293 | Msa0312130:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 2_4:+7190916 | None:intergenic |
| TTTGCTTCTTCTGAGCTATA+AGG | 0.312443 | 2_4:+7190848 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 2_4:-7192004 | Msa0312130:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 2_4:-7191064 | Msa0312130:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_4:+7193583 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 2_4:-7190667 | Msa0312130:three_prime_UTR |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 2_4:-7191745 | Msa0312130:CDS |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 2_4:-7191481 | Msa0312130:CDS |
| AATTCTTGATTGCTATGTAT+TGG | 0.360089 | 2_4:-7190686 | Msa0312130:three_prime_UTR |
| TAAAGAATCATGGAAGTCTT+TGG | 0.366064 | 2_4:-7194342 | Msa0312130:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 2_4:+7191188 | None:intergenic |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 2_4:-7191072 | Msa0312130:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_4:-7193576 | Msa0312130:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 2_4:-7191736 | Msa0312130:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_4:-7193584 | Msa0312130:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 2_4:+7194113 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 2_4:-7190924 | Msa0312130:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_4:+7190934 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2_4:-7191604 | Msa0312130:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 2_4:-7191356 | Msa0312130:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 2_4:+7191433 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 2_4:-7194271 | Msa0312130:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 2_4:-7191398 | Msa0312130:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 2_4:+7191432 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 2_4:-7193936 | Msa0312130:CDS |
| GAGGAGTTTCTACTTTCTAA+AGG | 0.430320 | 2_4:-7191039 | Msa0312130:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 2_4:-7194054 | Msa0312130:CDS |
| TACACGTGTTTGCGCAGATC+CGG | 0.442827 | 2_4:-7191112 | Msa0312130:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 2_4:-7194022 | Msa0312130:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_4:-7194071 | Msa0312130:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 2_4:+7191255 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 2_4:-7194188 | Msa0312130:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 2_4:-7193906 | Msa0312130:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 2_4:-7191904 | Msa0312130:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 2_4:-7194402 | Msa0312130:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 2_4:-7192114 | Msa0312130:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 2_4:-7191950 | Msa0312130:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 2_4:+7193966 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 2_4:-7191355 | Msa0312130:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 2_4:-7194222 | Msa0312130:CDS |
| GACTGCATAAGCTGACTGTT+GGG | 0.477128 | 2_4:+7191684 | None:intergenic |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 2_4:-7191905 | Msa0312130:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2_4:+7191602 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 2_4:+7194077 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 2_4:-7194284 | Msa0312130:CDS |
| CGTTAAAAGGAGATGGTGGC+TGG | 0.486252 | 2_4:-7193780 | Msa0312130:intron |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 2_4:-7190963 | Msa0312130:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 2_4:-7194228 | Msa0312130:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 2_4:-7191588 | Msa0312130:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 2_4:+7192313 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 2_4:-7192003 | Msa0312130:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_4:-7191764 | Msa0312130:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.496917 | 2_4:+7193978 | None:intergenic |
| AGAAATATTTCAGATGCCTC+CGG | 0.497902 | 2_4:+7191093 | None:intergenic |
| ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 2_4:-7191899 | Msa0312130:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 2_4:+7193688 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 2_4:-7190964 | Msa0312130:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 2_4:-7191917 | Msa0312130:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 2_4:-7191419 | Msa0312130:CDS |
| GTTCTCAAGATAAAGAATCA+TGG | 0.509798 | 2_4:-7194352 | Msa0312130:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 2_4:+7191439 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 2_4:+7191796 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 2_4:-7194018 | Msa0312130:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 2_4:-7191418 | Msa0312130:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2_4:+7191607 | None:intergenic |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 2_4:-7191198 | Msa0312130:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 2_4:-7194177 | Msa0312130:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 2_4:+7191801 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 2_4:-7191587 | Msa0312130:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_4:-7194176 | Msa0312130:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 2_4:+7192168 | None:intergenic |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 2_4:-7194378 | Msa0312130:CDS |
| GGACTGCATAAGCTGACTGT+TGG | 0.566141 | 2_4:+7191683 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.568482 | 2_4:-7190833 | Msa0312130:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 2_4:-7191449 | Msa0312130:CDS |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 2_4:+7190952 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.583788 | 2_4:+7191662 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 2_4:-7191071 | Msa0312130:CDS |
| ACCATATTCACAGACCAGGC+TGG | 0.590176 | 2_4:-7192182 | Msa0312130:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 2_4:-7191076 | Msa0312130:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 2_4:-7190771 | Msa0312130:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 2_4:+7190996 | None:intergenic |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 2_4:-7190814 | Msa0312130:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 2_4:+7191164 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 2_4:-7191601 | Msa0312130:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 2_4:-7194413 | Msa0312130:CDS |
| GATTTCAGCTTATCAACAGA+CGG | 0.615636 | 2_4:+7191213 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 2_4:+7194128 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 2_4:+7191948 | None:intergenic |
| AACTCGTTAAAAGGAGATGG+TGG | 0.622725 | 2_4:-7193784 | Msa0312130:intron |
| ACGTGTTTGCGCAGATCCGG+AGG | 0.624069 | 2_4:-7191109 | Msa0312130:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 2_4:-7190815 | Msa0312130:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 2_4:+7191434 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 2_4:-7192113 | Msa0312130:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_4:-7191763 | Msa0312130:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 2_4:-7194019 | Msa0312130:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 2_4:+7191642 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 2_4:-7191087 | Msa0312130:CDS |
| TCAAACCATATTCACAGACC+AGG | 0.663224 | 2_4:-7192186 | Msa0312130:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 2_4:+7191337 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 2_4:-7191354 | Msa0312130:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 2_4:-7191503 | Msa0312130:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 2_4:-7191502 | Msa0312130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAACATAACTAGTAA+TGG | + | chr2_4:7192205-7192224 | None:intergenic | 15.0% |
| !! | ATTATTTAGATTTAGATTTC+TGG | - | chr2_4:7192338-7192357 | Msa0312130:intron | 15.0% |
| !! | TCAAAATGTTAATGTTTATT+TGG | + | chr2_4:7192586-7192605 | None:intergenic | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr2_4:7194305-7194324 | Msa0312130:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr2_4:7190805-7190824 | Msa0312130:exon | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr2_4:7190861-7190880 | Msa0312130:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr2_4:7191067-7191086 | Msa0312130:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr2_4:7191660-7191679 | Msa0312130:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr2_4:7191688-7191707 | Msa0312130:CDS | 20.0% |
| !!! | ATCATAGGTGTTTTTTTTAT+GGG | - | chr2_4:7192099-7192118 | Msa0312130:CDS | 20.0% |
| !! | GTTATGTTATATTTAGATTG+AGG | - | chr2_4:7192211-7192230 | Msa0312130:CDS | 20.0% |
| !!! | ATGATGAAAATCTGTTTTAA+TGG | - | chr2_4:7193114-7193133 | Msa0312130:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr2_4:7190711-7190730 | Msa0312130:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr2_4:7190857-7190876 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr2_4:7190867-7190886 | Msa0312130:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr2_4:7191070-7191089 | Msa0312130:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr2_4:7191071-7191090 | Msa0312130:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr2_4:7191183-7191202 | Msa0312130:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAACT+TGG | + | chr2_4:7191384-7191403 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr2_4:7191418-7191437 | Msa0312130:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr2_4:7191419-7191438 | Msa0312130:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr2_4:7191505-7191524 | Msa0312130:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr2_4:7191531-7191550 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr2_4:7191578-7191597 | Msa0312130:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr2_4:7191680-7191699 | Msa0312130:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr2_4:7191687-7191706 | Msa0312130:CDS | 25.0% |
| !!! | AGATCATAGGTGTTTTTTTA+CGG | - | chr2_4:7191858-7191877 | Msa0312130:CDS | 25.0% |
| !!! | GATCATAGGTGTTTTTTTTA+TGG | - | chr2_4:7192098-7192117 | Msa0312130:CDS | 25.0% |
| !! | TGCTAGTCAAATTTTTATTG+TGG | - | chr2_4:7192467-7192486 | Msa0312130:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr2_4:7192734-7192753 | Msa0312130:intron | 25.0% |
| !! | TATGGTTTGAAGTTTCTTAT+TGG | + | chr2_4:7192893-7192912 | None:intergenic | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr2_4:7192952-7192971 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr2_4:7193044-7193063 | Msa0312130:intron | 25.0% |
| !!! | TGAAAATCTGTTTTAATGGA+AGG | - | chr2_4:7193118-7193137 | Msa0312130:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr2_4:7193311-7193330 | Msa0312130:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr2_4:7193450-7193469 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr2_4:7193485-7193504 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr2_4:7193485-7193504 | Msa0312130:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr2_4:7193586-7193605 | Msa0312130:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr2_4:7193587-7193606 | Msa0312130:CDS | 25.0% |
| ! | AATTCTTGATTGCTATGTAT+TGG | - | chr2_4:7194403-7194422 | Msa0312130:CDS | 25.0% |
| GTTCTCAAGATAAAGAATCA+TGG | - | chr2_4:7190737-7190756 | Msa0312130:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr2_4:7190747-7190766 | Msa0312130:three_prime_UTR | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr2_4:7190912-7190931 | Msa0312130:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr2_4:7190913-7190932 | Msa0312130:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr2_4:7191002-7191021 | Msa0312130:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr2_4:7191035-7191054 | Msa0312130:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr2_4:7191114-7191133 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr2_4:7191216-7191235 | Msa0312130:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr2_4:7191260-7191279 | Msa0312130:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr2_4:7191270-7191289 | None:intergenic | 30.0% | |
| TCTAATGACAACTCGTTAAA+AGG | - | chr2_4:7191296-7191315 | Msa0312130:CDS | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr2_4:7191456-7191475 | Msa0312130:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr2_4:7191509-7191528 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr2_4:7191513-7191532 | Msa0312130:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr2_4:7191592-7191611 | Msa0312130:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr2_4:7191617-7191636 | Msa0312130:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr2_4:7191751-7191770 | None:intergenic | 30.0% | |
| TACAGCTATTCAAAGATCAT+AGG | - | chr2_4:7191982-7192001 | Msa0312130:CDS | 30.0% | |
| ! | TTTGCTAGTTTAGACAAGAT+AGG | - | chr2_4:7192148-7192167 | Msa0312130:CDS | 30.0% |
| ! | TTGCTAGTTTAGACAAGATA+GGG | - | chr2_4:7192149-7192168 | Msa0312130:CDS | 30.0% |
| CATTATTCCTTACAATCACT+TGG | - | chr2_4:7192312-7192331 | Msa0312130:CDS | 30.0% | |
| TAATAAGCCAAGTGATTGTA+AGG | + | chr2_4:7192322-7192341 | None:intergenic | 30.0% | |
| !! | TTAGATTTCTGGTTTGTTGT+TGG | - | chr2_4:7192349-7192368 | Msa0312130:intron | 30.0% |
| !!! | ATGGTTTTAATTGATCATCC+AGG | + | chr2_4:7192637-7192656 | None:intergenic | 30.0% |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr2_4:7192779-7192798 | None:intergenic | 30.0% | |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr2_4:7192943-7192962 | Msa0312130:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr2_4:7192955-7192974 | Msa0312130:intron | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr2_4:7193000-7193019 | Msa0312130:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr2_4:7193085-7193104 | Msa0312130:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr2_4:7193086-7193105 | Msa0312130:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr2_4:7193296-7193315 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr2_4:7193430-7193449 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr2_4:7193490-7193509 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr2_4:7193488-7193507 | Msa0312130:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr2_4:7193545-7193564 | Msa0312130:intron | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr2_4:7193658-7193677 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr2_4:7193659-7193678 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr2_4:7193670-7193689 | Msa0312130:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr2_4:7193671-7193690 | Msa0312130:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr2_4:7193767-7193786 | Msa0312130:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr2_4:7193770-7193789 | Msa0312130:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr2_4:7193835-7193854 | Msa0312130:intron | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr2_4:7194002-7194021 | Msa0312130:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr2_4:7194158-7194177 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr2_4:7194165-7194184 | Msa0312130:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr2_4:7194176-7194195 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr2_4:7194274-7194293 | Msa0312130:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr2_4:7194318-7194337 | Msa0312130:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr2_4:7194336-7194355 | Msa0312130:CDS | 30.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr2_4:7190676-7190695 | Msa0312130:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr2_4:7190818-7190837 | Msa0312130:exon | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr2_4:7190901-7190920 | Msa0312130:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr2_4:7190938-7190957 | Msa0312130:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr2_4:7190979-7190998 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr2_4:7190996-7191015 | Msa0312130:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr2_4:7191001-7191020 | Msa0312130:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr2_4:7191153-7191172 | Msa0312130:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr2_4:7191215-7191234 | Msa0312130:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr2_4:7191598-7191617 | Msa0312130:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr2_4:7191718-7191737 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | + | chr2_4:7191727-7191746 | None:intergenic | 35.0% | |
| AAACACCTATGATCTTTGCA+TGG | + | chr2_4:7191853-7191872 | None:intergenic | 35.0% | |
| ! | GTAATGGTTACATTGACTGA+GGG | + | chr2_4:7192189-7192208 | None:intergenic | 35.0% |
| ! | AGTAATGGTTACATTGACTG+AGG | + | chr2_4:7192190-7192209 | None:intergenic | 35.0% |
| AACTGATGCACTCAAAATGT+AGG | - | chr2_4:7192252-7192271 | Msa0312130:CDS | 35.0% | |
| CTTTGTGACTATCTGTAGTT+AGG | - | chr2_4:7192431-7192450 | Msa0312130:intron | 35.0% | |
| CTATCTGTAGTTAGGAATCA+AGG | - | chr2_4:7192439-7192458 | Msa0312130:intron | 35.0% | |
| AAACCATTAAGTACAGCCAA+TGG | - | chr2_4:7192650-7192669 | Msa0312130:intron | 35.0% | |
| ! | AAACCATTGGCTGTACTTAA+TGG | + | chr2_4:7192656-7192675 | None:intergenic | 35.0% |
| ! | TTAAGTACAGCCAATGGTTT+TGG | - | chr2_4:7192656-7192675 | Msa0312130:intron | 35.0% |
| TAGTTGTACACCAAAACCAT+TGG | + | chr2_4:7192669-7192688 | None:intergenic | 35.0% | |
| ! | TTGTGCTGTGTAAATGGTTT+TGG | + | chr2_4:7192693-7192712 | None:intergenic | 35.0% |
| AAACCATTTACACAGCACAA+TGG | - | chr2_4:7192693-7192712 | Msa0312130:intron | 35.0% | |
| AAACCATTGTGCTGTGTAAA+TGG | + | chr2_4:7192699-7192718 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr2_4:7192796-7192815 | Msa0312130:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr2_4:7192839-7192858 | Msa0312130:intron | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr2_4:7192968-7192987 | Msa0312130:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr2_4:7193128-7193147 | Msa0312130:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr2_4:7193172-7193191 | Msa0312130:intron | 35.0% | |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr2_4:7193255-7193274 | Msa0312130:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr2_4:7193325-7193344 | Msa0312130:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr2_4:7193326-7193345 | Msa0312130:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr2_4:7193608-7193627 | Msa0312130:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr2_4:7193660-7193679 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr2_4:7193777-7193796 | Msa0312130:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr2_4:7193837-7193856 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr2_4:7193838-7193857 | Msa0312130:intron | 35.0% |
| GATTTCAGCTTATCAACAGA+CGG | + | chr2_4:7193879-7193898 | None:intergenic | 35.0% | |
| CTGAAATCTACCATGAATGT+TGG | - | chr2_4:7193891-7193910 | Msa0312130:CDS | 35.0% | |
| AGAAATATTTCAGATGCCTC+CGG | + | chr2_4:7193999-7194018 | None:intergenic | 35.0% | |
| GAGGAGTTTCTACTTTCTAA+AGG | - | chr2_4:7194050-7194069 | Msa0312130:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr2_4:7194104-7194123 | None:intergenic | 35.0% |
| TTTGCTTCTTCTGAGCTATA+AGG | + | chr2_4:7194244-7194263 | None:intergenic | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr2_4:7194256-7194275 | Msa0312130:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr2_4:7194275-7194294 | Msa0312130:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr2_4:7190687-7190706 | Msa0312130:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr2_4:7190952-7190971 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr2_4:7191222-7191241 | Msa0312130:CDS | 40.0% |
| GACAACTCGTTAAAAGGAGA+TGG | - | chr2_4:7191302-7191321 | Msa0312130:CDS | 40.0% | |
| AACTCGTTAAAAGGAGATGG+TGG | - | chr2_4:7191305-7191324 | Msa0312130:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr2_4:7191426-7191445 | Msa0312130:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr2_4:7191845-7191864 | Msa0312130:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr2_4:7191849-7191868 | None:intergenic | 40.0% | |
| CAACTTCTCTGATCTTTGCA+TGG | + | chr2_4:7191955-7191974 | None:intergenic | 40.0% | |
| AAGATCAGAGAAGTTGTGCT+CGG | - | chr2_4:7191959-7191978 | Msa0312130:CDS | 40.0% | |
| TACAGCCATGCAAAGATCAT+AGG | - | chr2_4:7192084-7192103 | Msa0312130:CDS | 40.0% | |
| TGATGCACTCAAAATGTAGG+TGG | - | chr2_4:7192255-7192274 | Msa0312130:CDS | 40.0% | |
| ! | CGTGGCATGTCAAAATTTTG+TGG | - | chr2_4:7192395-7192414 | Msa0312130:intron | 40.0% |
| ! | CCAGGTGATAATGATGATGA+TGG | + | chr2_4:7192619-7192638 | None:intergenic | 40.0% |
| CCATCATCATCATTATCACC+TGG | - | chr2_4:7192616-7192635 | Msa0312130:intron | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr2_4:7192763-7192782 | Msa0312130:intron | 40.0% | |
| TCAAACCATATTCACAGACC+AGG | - | chr2_4:7192903-7192922 | Msa0312130:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr2_4:7193185-7193204 | Msa0312130:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr2_4:7193291-7193310 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr2_4:7193344-7193363 | Msa0312130:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr2_4:7193353-7193372 | Msa0312130:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr2_4:7193501-7193520 | Msa0312130:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr2_4:7193502-7193521 | Msa0312130:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr2_4:7193640-7193659 | Msa0312130:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr2_4:7193733-7193752 | Msa0312130:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr2_4:7193734-7193753 | Msa0312130:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr2_4:7193780-7193799 | Msa0312130:intron | 40.0% |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr2_4:7193904-7193923 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr2_4:7193928-7193947 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr2_4:7194013-7194032 | Msa0312130:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr2_4:7194096-7194115 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr2_4:7194182-7194201 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr2_4:7190964-7190983 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr2_4:7191006-7191025 | Msa0312130:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr2_4:7191015-7191034 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr2_4:7191018-7191037 | Msa0312130:CDS | 45.0% |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr2_4:7191404-7191423 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr2_4:7191731-7191750 | Msa0312130:CDS | 45.0% | |
| TGTACAGAGACCAACTTCTC+AGG | + | chr2_4:7192068-7192087 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr2_4:7193144-7193163 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr2_4:7193184-7193203 | Msa0312130:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr2_4:7193207-7193226 | Msa0312130:intron | 45.0% |
| GACTGCATAAGCTGACTGTT+GGG | + | chr2_4:7193408-7193427 | None:intergenic | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr2_4:7193653-7193672 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr2_4:7193735-7193754 | Msa0312130:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr2_4:7193755-7193774 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr2_4:7194025-7194044 | Msa0312130:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr2_4:7194126-7194145 | Msa0312130:CDS | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr2_4:7191126-7191145 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr2_4:7191228-7191247 | Msa0312130:CDS | 50.0% |
| ! | CGTTAAAAGGAGATGGTGGC+TGG | - | chr2_4:7191309-7191328 | Msa0312130:CDS | 50.0% |
| AGACATCTCGCCTGAGAAGT+TGG | - | chr2_4:7192055-7192074 | Msa0312130:CDS | 50.0% | |
| TAAGATCGCGATGAGTCACG+TGG | - | chr2_4:7192377-7192396 | Msa0312130:intron | 50.0% | |
| ACCATATTCACAGACCAGGC+TGG | - | chr2_4:7192907-7192926 | Msa0312130:intron | 50.0% | |
| ACCAGCCTGGTCTGTGAATA+TGG | + | chr2_4:7192911-7192930 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr2_4:7192975-7192994 | Msa0312130:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr2_4:7192976-7192995 | Msa0312130:intron | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr2_4:7193139-7193158 | Msa0312130:intron | 50.0% | |
| !! | ATTGGTCTTCAGCTTGGGTG+AGG | - | chr2_4:7193190-7193209 | Msa0312130:intron | 50.0% |
| GGACTGCATAAGCTGACTGT+TGG | + | chr2_4:7193409-7193428 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr2_4:7193691-7193710 | Msa0312130:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATC+CGG | - | chr2_4:7193977-7193996 | Msa0312130:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr2_4:7194018-7194037 | Msa0312130:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr2_4:7194125-7194144 | Msa0312130:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr2_4:7194140-7194159 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr2_4:7191231-7191250 | Msa0312130:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr2_4:7192924-7192943 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr2_4:7194017-7194036 | Msa0312130:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr2_4:7194031-7194050 | Msa0312130:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr2_4:7191236-7191255 | Msa0312130:CDS | 60.0% | |
| ACGTGTTTGCGCAGATCCGG+AGG | - | chr2_4:7193980-7193999 | Msa0312130:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 7190667 | 7194444 | 7190667 | ID=Msa0312130;Name=Msa0312130 |
| chr2_4 | mRNA | 7190667 | 7194444 | 7190667 | ID=Msa0312130-mRNA-1;Parent=Msa0312130;Name=Msa0312130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.33|1|1|1|3|152|766 |
| chr2_4 | exon | 7190667 | 7192338 | 7190667 | ID=Msa0312130-mRNA-1:exon:2775;Parent=Msa0312130-mRNA-1 |
| chr2_4 | exon | 7193577 | 7193793 | 7193577 | ID=Msa0312130-mRNA-1:exon:2774;Parent=Msa0312130-mRNA-1 |
| chr2_4 | exon | 7193881 | 7194444 | 7193881 | ID=Msa0312130-mRNA-1:exon:2773;Parent=Msa0312130-mRNA-1 |
| chr2_4 | CDS | 7193881 | 7194444 | 7193881 | ID=Msa0312130-mRNA-1:cds;Parent=Msa0312130-mRNA-1 |
| chr2_4 | CDS | 7193577 | 7193793 | 7193577 | ID=Msa0312130-mRNA-1:cds;Parent=Msa0312130-mRNA-1 |
| chr2_4 | CDS | 7190819 | 7192338 | 7190819 | ID=Msa0312130-mRNA-1:cds;Parent=Msa0312130-mRNA-1 |
| chr2_4 | three_prime_UTR | 7190667 | 7190818 | 7190667 | ID=Msa0312130-mRNA-1:three_prime_utr;Parent=Msa0312130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
