AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313120 MtrunA17_Chr2g0282441 83.573 347 35 5 1 336 1 336 1.13e-157 444
Msa0313120 MtrunA17_Chr2g0328021 65.556 90 25 2 12 95 45 134 1.18e-33 125
Msa0313120 MtrunA17_Chr8g0346551 65.882 85 28 1 19 102 17 101 1.93e-32 122
Msa0313120 MtrunA17_Chr4g0030051 77.941 68 12 2 11 76 26 92 5.54e-31 118
Msa0313120 MtrunA17_Chr7g0223311 56.863 102 33 2 11 111 62 153 6.25e-31 120
Msa0313120 MtrunA17_Chr8g0367161 82.540 63 10 1 26 88 33 94 7.87e-31 119
Msa0313120 MtrunA17_Chr2g0326001 78.689 61 10 1 22 79 34 94 9.78e-30 115
Msa0313120 MtrunA17_Chr4g0047001 65.882 85 18 2 26 100 56 139 1.13e-29 117
Msa0313120 MtrunA17_Chr3g0127201 75.385 65 13 1 19 80 18 82 1.60e-29 114
Msa0313120 MtrunA17_Chr3g0126201 72.308 65 15 1 17 81 46 107 4.59e-29 114
Msa0313120 MtrunA17_Chr3g0117601 83.636 55 9 0 21 75 57 111 5.08e-29 114
Msa0313120 MtrunA17_Chr8g0374251 80.357 56 11 0 23 78 66 121 6.60e-29 114
Msa0313120 MtrunA17_Chr7g0237921 66.216 74 24 1 6 79 58 130 1.04e-28 113
Msa0313120 MtrunA17_Chr5g0411951 84.906 53 8 0 23 75 41 93 1.85e-28 112
Msa0313120 MtrunA17_Chr1g0188851 66.667 69 18 1 18 81 31 99 1.89e-28 111
Msa0313120 MtrunA17_Chr4g0010151 66.667 75 20 2 10 79 62 136 4.48e-28 112
Msa0313120 MtrunA17_Chr4g0061761 88.000 50 6 0 26 75 41 90 4.91e-28 111
Msa0313120 MtrunA17_Chr4g0031411 40.571 175 65 5 22 181 71 221 7.82e-28 110
Msa0313120 MtrunA17_Chr1g0177251 81.132 53 10 0 27 79 14 66 5.82e-27 107
Msa0313120 MtrunA17_Chr2g0308011 87.500 48 6 0 26 73 38 85 7.47e-27 105
Msa0313120 MtrunA17_Chr8g0374111 64.000 75 22 2 22 91 22 96 2.52e-26 104
Msa0313120 MtrunA17_Chr2g0282511 89.583 48 5 0 26 73 46 93 8.17e-26 105
Msa0313120 MtrunA17_Chr8g0341671 72.881 59 16 0 26 84 21 79 9.18e-26 102
Msa0313120 MtrunA17_Chr2g0282051 64.286 70 22 2 14 81 33 101 4.10e-24 99.8
Msa0313120 MtrunA17_Chr3g0092111 68.421 57 18 0 27 83 138 194 8.45e-24 101
Msa0313120 MtrunA17_Chr4g0047761 76.364 55 12 1 27 81 74 127 8.48e-24 99.8
Msa0313120 MtrunA17_Chr7g0217581 60.274 73 27 1 27 97 234 306 2.54e-23 100
Msa0313120 MtrunA17_Chr4g0042481 68.421 57 18 0 27 83 124 180 3.90e-23 99.8
Msa0313120 MtrunA17_Chr6g0453321 53.409 88 32 2 17 95 125 212 8.92e-23 99.0
Msa0313120 MtrunA17_Chr7g0254161 52.778 72 34 0 7 78 83 154 1.16e-22 97.8
Msa0313120 MtrunA17_Chr2g0283811 71.154 52 15 0 27 78 49 100 1.44e-22 92.4
Msa0313120 MtrunA17_Chr6g0460731 41.085 129 58 3 26 151 97 210 2.16e-22 96.7
Msa0313120 MtrunA17_Chr8g0355261 64.815 54 19 0 27 80 120 173 2.24e-22 97.4
Msa0313120 MtrunA17_Chr6g0460721 64.815 54 19 0 26 79 90 143 5.19e-22 94.7
Msa0313120 MtrunA17_Chr5g0417571 53.247 77 32 1 4 80 121 193 1.50e-20 90.5
Msa0313120 MtrunA17_Chr5g0417551 65.517 58 20 0 27 84 129 186 4.70e-20 89.7
Msa0313120 MtrunA17_Chr5g0417601 67.308 52 17 0 27 78 142 193 6.16e-20 89.7
Msa0313120 MtrunA17_Chr5g0417561 65.517 58 20 0 27 84 121 178 1.20e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313120 AT5G60850.1 63.043 92 28 2 18 109 44 129 7.32e-33 124
Msa0313120 AT5G60200.1 73.529 68 14 1 22 85 48 115 5.09e-32 120
Msa0313120 AT5G62940.1 75.362 69 12 1 7 75 60 123 1.09e-31 122
Msa0313120 AT2G28510.1 77.419 62 14 0 23 84 46 107 1.78e-30 117
Msa0313120 AT1G07640.1 67.568 74 22 1 8 79 2 75 1.04e-29 115
Msa0313120 AT1G51700.1 68.000 75 22 1 26 100 34 106 1.20e-29 112
Msa0313120 AT1G07640.2 67.568 74 22 1 8 79 58 131 1.63e-29 115
Msa0313120 AT5G65590.1 43.976 166 72 5 15 177 31 178 1.99e-29 115
Msa0313120 AT1G07640.3 67.568 74 22 1 8 79 66 139 2.02e-29 115
Msa0313120 AT3G61850.2 62.353 85 29 2 19 102 55 137 2.61e-29 114
Msa0313120 AT3G61850.3 62.353 85 29 2 19 102 55 137 2.61e-29 114
Msa0313120 AT3G52440.1 72.727 66 18 0 27 92 27 92 2.84e-29 113
Msa0313120 AT3G61850.1 62.353 85 29 2 19 102 67 149 3.37e-29 114
Msa0313120 AT3G52440.2 72.727 66 18 0 27 92 46 111 3.45e-29 113
Msa0313120 AT3G61850.5 62.353 85 29 2 19 102 55 137 3.78e-29 114
Msa0313120 AT3G61850.4 62.353 85 29 2 19 102 67 149 4.67e-29 114
Msa0313120 AT2G28810.2 64.789 71 25 0 6 76 58 128 9.01e-29 113
Msa0313120 AT2G37590.1 78.571 56 12 0 26 81 90 145 9.69e-29 113
Msa0313120 AT3G45610.1 68.750 64 20 0 23 86 38 101 1.02e-28 111
Msa0313120 AT2G28810.1 64.789 71 25 0 6 76 75 145 1.34e-28 113
Msa0313120 AT4G21050.1 67.647 68 22 0 22 89 21 88 2.34e-28 109
Msa0313120 AT3G55370.1 76.667 60 14 0 27 86 78 137 2.91e-28 112
Msa0313120 AT5G66940.1 50.000 110 50 3 27 131 34 143 3.70e-28 109
Msa0313120 AT3G55370.2 76.667 60 14 0 27 86 78 137 4.08e-28 112
Msa0313120 AT3G55370.3 65.753 73 22 1 17 86 110 182 4.89e-28 112
Msa0313120 AT1G21340.1 77.586 58 13 0 27 84 40 97 6.94e-28 109
Msa0313120 AT1G28310.1 82.143 56 10 0 26 81 28 83 7.60e-28 110
Msa0313120 AT4G00940.1 77.193 57 13 0 23 79 66 122 1.12e-27 110
Msa0313120 AT4G00940.3 77.193 57 13 0 23 79 66 122 1.12e-27 110
Msa0313120 AT4G00940.2 77.193 57 13 0 23 79 66 122 1.12e-27 110
Msa0313120 AT1G28310.2 82.143 56 10 0 26 81 52 107 1.15e-27 110
Msa0313120 AT4G38000.1 50.000 120 40 3 26 143 42 143 6.20e-27 107
Msa0313120 AT5G02460.1 59.783 92 36 1 26 117 96 186 8.59e-27 109
Msa0313120 AT3G21270.1 86.275 51 7 0 26 76 30 80 1.00e-26 105
Msa0313120 AT4G24060.1 75.439 57 14 0 23 79 51 107 2.56e-26 107
Msa0313120 AT3G50410.1 78.947 57 11 1 27 82 32 88 3.41e-26 105
Msa0313120 AT2G46590.1 76.364 55 12 1 19 72 61 115 1.08e-24 103
Msa0313120 AT1G47655.1 76.471 51 12 0 23 73 27 77 1.17e-24 99.8
Msa0313120 AT1G64620.1 67.742 62 15 1 18 74 37 98 1.27e-24 102
Msa0313120 AT2G46590.2 76.364 55 12 1 19 72 73 127 1.30e-24 103
Msa0313120 AT3G47500.1 72.222 54 15 0 27 80 112 165 4.69e-23 99.8
Msa0313120 AT5G62430.1 51.250 80 36 1 2 78 28 107 4.69e-23 97.4
Msa0313120 AT4G21040.1 61.194 67 26 0 27 93 27 93 7.52e-23 95.5
Msa0313120 AT1G69570.1 59.701 67 27 0 12 78 119 185 8.64e-23 98.6
Msa0313120 AT5G39660.3 59.420 69 24 1 10 78 127 191 1.49e-22 98.2
Msa0313120 AT5G39660.1 59.420 69 24 1 10 78 127 191 1.49e-22 98.2
Msa0313120 AT5G39660.2 59.420 69 24 1 10 78 127 191 1.49e-22 98.2
Msa0313120 AT2G34140.1 59.155 71 26 1 11 78 41 111 2.68e-22 92.4
Msa0313120 AT1G29160.1 61.194 67 23 1 15 78 49 115 3.79e-22 92.0
Msa0313120 AT4G21080.1 69.231 52 16 0 27 78 27 78 2.23e-21 92.0
Msa0313120 AT1G26790.1 67.308 52 17 0 27 78 113 164 9.50e-21 92.4
Msa0313120 AT4G21030.1 50.000 72 36 0 22 93 18 89 1.84e-16 77.0

Find 91 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCTCTGATCAATCTTTA+TGG 0.208599 2_4:+8432711 Msa0313120:CDS
GGGTAGTGGATCTGCTTCTT+TGG 0.299081 2_4:+8432871 Msa0313120:CDS
CAACATTGAAACCTTGTAAA+AGG 0.337370 2_4:-8432481 None:intergenic
GGTAGCGGTGATGTTGCTGC+TGG 0.358687 2_4:+8432848 Msa0313120:CDS
CTTCTTTGGCTCTGAATCAA+TGG 0.377878 2_4:+8432885 Msa0313120:CDS
GTTGGAGTTGGTGTTGGTCT+TGG 0.379165 2_4:+8432440 Msa0313120:CDS
TGGTGTTGAGGATGAAGTTT+TGG 0.384562 2_4:-8432168 None:intergenic
TTCTTTCAACTAGGTGGTAA+TGG 0.386741 2_4:+8432560 Msa0313120:CDS
GTAGCGGTGATGTTGCTGCT+GGG 0.397946 2_4:+8432849 Msa0313120:CDS
TTCCCTAAGGAATTACTTGA+TGG 0.409259 2_4:-8432188 None:intergenic
CTGCTACTTATAATGAAAGT+TGG 0.411866 2_4:+8432657 Msa0313120:CDS
TGAAAGAATTGTTGCGGCGG+TGG 0.414683 2_4:-8432545 None:intergenic
ACACCATCAAGTAATTCCTT+AGG 0.417503 2_4:+8432185 Msa0313120:CDS
CCACTATTGATGAAGCTTTG+AGG 0.422498 2_4:-8432680 None:intergenic
TGTGCTGAAGAGTGTGTTGA+TGG 0.423312 2_4:-8432389 None:intergenic
ATCAACACCACTTCAACTAA+TGG 0.426570 2_4:+8432740 Msa0313120:CDS
TGTTGCGGCGGTGGACGATT+CGG 0.426876 2_4:-8432536 None:intergenic
AATCAATGGCATGATCTGTC+AGG 0.428092 2_4:+8432899 Msa0313120:CDS
GTTGGTGTTGGAGTTGGTGT+TGG 0.430153 2_4:+8432434 Msa0313120:CDS
GTGGCAGTGTTGGCCGAGAC+AGG 0.438645 2_4:-8432217 None:intergenic
GCTGGTGGTAGCCGTGGTGC+TGG 0.442217 2_4:+8432824 Msa0313120:CDS
CCATCGCAGCCATGGTCAAC+TGG 0.443933 2_4:-8432250 None:intergenic
GCAAAACATGCAGAAGGTAC+TGG 0.452080 2_4:+8432084 Msa0313120:CDS
GAATGATTAAATGCCGCAAA+AGG 0.453309 2_4:-8432353 None:intergenic
GGTAGTCGTGGTGTTGGTGC+TGG 0.457080 2_4:+8432806 Msa0313120:CDS
CAGAATGTTGGTGTTGGAGT+TGG 0.465123 2_4:+8432428 Msa0313120:CDS
GTAGCAACAGAAGTAGTAGA+TGG 0.471780 2_4:-8432629 None:intergenic
CACCATCAAGTAATTCCTTA+GGG 0.476186 2_4:+8432186 Msa0313120:CDS
TAGGGAATTCTTCCCTGTCT+CGG 0.487674 2_4:+8432204 Msa0313120:CDS
TCCACCACCATTAGTTGAAG+TGG 0.494139 2_4:-8432747 None:intergenic
TGTTGGTGGTGGTTGTCGTA+AGG 0.494164 2_4:+8432136 Msa0313120:CDS
ATTAGTGTTGGTGCTGATGC+TGG 0.494830 2_4:+8432782 Msa0313120:CDS
CCTCAAAGCTTCATCAATAG+TGG 0.497822 2_4:+8432680 Msa0313120:CDS
AGCCGTGGTGCTGGTGGTAG+CGG 0.499787 2_4:+8432833 Msa0313120:CDS
TTACGACAACCACCACCAAC+AGG 0.505491 2_4:-8432134 None:intergenic
CTAGGACACTTCTGAGGTTG+AGG 0.509691 2_4:-8431993 None:intergenic
AGAAATGTTCCTGTTGGTGG+TGG 0.514308 2_4:+8432125 Msa0313120:CDS
CTCAACCTCAGAAGTGTCCT+AGG 0.514646 2_4:+8431994 Msa0313120:CDS
CCGCAACAATTCTTTCAACT+AGG 0.517280 2_4:+8432551 Msa0313120:CDS
TTTGAACAGTCTCAGAATGT+TGG 0.527603 2_4:+8432416 Msa0313120:CDS
CCAGTTGACCATGGCTGCGA+TGG 0.534868 2_4:+8432250 Msa0313120:CDS
TTGAGAAATGTTCCTGTTGG+TGG 0.536092 2_4:+8432122 Msa0313120:CDS
ACCACTTCAACTAATGGTGG+TGG 0.543681 2_4:+8432746 Msa0313120:CDS
CGCAGCCATGGTCAACTGGT+CGG 0.551583 2_4:-8432246 None:intergenic
TCGGTTGATTGTGGCAGTGT+TGG 0.553797 2_4:-8432227 None:intergenic
TAGCGGTGATGTTGCTGCTG+GGG 0.555623 2_4:+8432850 Msa0313120:CDS
GCTGGTGGTAGTCGTGGTGT+TGG 0.556337 2_4:+8432800 Msa0313120:CDS
AAGAACGTGGTGATGGTGGA+AGG 0.564755 2_4:+8431937 Msa0313120:CDS
GTTGTTGTAATAGCAGAACT+TGG 0.576616 2_4:-8432033 None:intergenic
TGCAGAAGGTACTGGACTCA+AGG 0.580923 2_4:+8432092 Msa0313120:CDS
CGTGGTGATGGTGGAAGGAG+AGG 0.581943 2_4:+8431942 Msa0313120:CDS
TGGCAGTGTTGGCCGAGACA+GGG 0.584331 2_4:-8432216 None:intergenic
GTTGGTGGTGGTTGTCGTAA+GGG 0.586036 2_4:+8432137 Msa0313120:CDS
GTCAACTGGTCGGTTGATTG+TGG 0.591951 2_4:-8432236 None:intergenic
ATTCAAACCTCGTGGTTCAG+AGG 0.592802 2_4:-8432597 None:intergenic
GAGCAAGAACGTGGTGATGG+TGG 0.595958 2_4:+8431933 Msa0313120:CDS
CAGTCTCAGAATGTTGGTGT+TGG 0.601097 2_4:+8432422 Msa0313120:CDS
AGCGGTGATGTTGCTGCTGG+GGG 0.601330 2_4:+8432851 Msa0313120:CDS
GGTGGTAGCCGTGGTGCTGG+TGG 0.612351 2_4:+8432827 Msa0313120:CDS
CAACAATTCTTTCAACTAGG+TGG 0.614943 2_4:+8432554 Msa0313120:CDS
AGTCGTGGTGTTGGTGCTGG+TGG 0.615015 2_4:+8432809 Msa0313120:CDS
ATCAATGGCATGATCTGTCA+GGG 0.615122 2_4:+8432900 Msa0313120:CDS
GGAATTACTTGATGGTGTTG+AGG 0.615613 2_4:-8432180 None:intergenic
TCTTCTGCAAAACATGCAGA+AGG 0.615692 2_4:+8432078 Msa0313120:CDS
GTTGGTGCTGGTGGTAGCCG+TGG 0.616357 2_4:+8432818 Msa0313120:CDS
AGAAGAAACGAGGCTGAGAG+AGG 0.619615 2_4:-8432061 None:intergenic
ATGGAGCAAGAACGTGGTGA+TGG 0.620486 2_4:+8431930 Msa0313120:CDS
CGTGGTTCAGAGGTAAACAT+TGG 0.628309 2_4:-8432587 None:intergenic
GCTGATGCTGGTGGTAGTCG+TGG 0.632658 2_4:+8432794 Msa0313120:CDS
ATGGTGGTGGAAATTCTGAA+AGG 0.635909 2_4:+8432759 Msa0313120:CDS
AACACCACTTCAACTAATGG+TGG 0.642679 2_4:+8432743 Msa0313120:CDS
GCAACAGAAGTAGTAGATGG+AGG 0.642839 2_4:-8432626 None:intergenic
TTTCAACTAGGTGGTAATGG+AGG 0.647517 2_4:+8432563 Msa0313120:CDS
CCTAGTTGAAAGAATTGTTG+CGG 0.647938 2_4:-8432551 None:intergenic
CACCGCTACCACCAGCACCA+CGG 0.647987 2_4:-8432835 None:intergenic
ACATTGAGAAATGTTCCTGT+TGG 0.650180 2_4:+8432119 Msa0313120:CDS
AATTCTGAAAGGATTAGTGT+TGG 0.651086 2_4:+8432770 Msa0313120:CDS
AGACAGGGAAGAATTCCCTA+AGG 0.652666 2_4:-8432201 None:intergenic
TCACACCTAGGACACTTCTG+AGG 0.655155 2_4:-8431999 None:intergenic
AGTGTTGGTGCTGATGCTGG+TGG 0.659084 2_4:+8432785 Msa0313120:CDS
ATCAACCGACCAGTTGACCA+TGG 0.659300 2_4:+8432241 Msa0313120:CDS
CATCAACAAGATCACTGAGG+AGG 0.672156 2_4:-8432929 None:intergenic
GGAATCAAATTCAAACCTCG+TGG 0.678570 2_4:-8432605 None:intergenic
TGAGAGATGGAGCAAGAACG+TGG 0.685685 2_4:+8431924 None:intergenic
AGTTGAAAGAATTGTTGCGG+CGG 0.685998 2_4:-8432548 None:intergenic
ACTCCATAAAGATTGATCAG+AGG 0.693689 2_4:-8432714 None:intergenic
GTGTTGAATGAATCACACCT+AGG 0.703840 2_4:-8432011 None:intergenic
GCTCTTGTAAGCTCATCACA+AGG 0.707366 2_4:+8432512 Msa0313120:CDS
AGAAGGTACTGGACTCAAGG+TGG 0.711298 2_4:+8432095 Msa0313120:CDS
ATGTTTACCTCTGAACCACG+AGG 0.723992 2_4:+8432590 Msa0313120:CDS
CAACATCAACAAGATCACTG+AGG 0.799835 2_4:-8432932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCAAATTTGAGCCTTTTACA+AGG + chr2_4:8432470-8432489 Msa0313120:CDS 30.0%
CAACATTGAAACCTTGTAAA+AGG - chr2_4:8432484-8432503 None:intergenic 30.0%
! CTGCTACTTATAATGAAAGT+TGG + chr2_4:8432657-8432676 Msa0313120:CDS 30.0%
! AATTCTGAAAGGATTAGTGT+TGG + chr2_4:8432770-8432789 Msa0313120:CDS 30.0%
! TCAAATTTGAGCCTTTTACA+AGG + chr2_4:8432470-8432489 Msa0313120:CDS 30.0%
CAACATTGAAACCTTGTAAA+AGG - chr2_4:8432484-8432503 None:intergenic 30.0%
! CTGCTACTTATAATGAAAGT+TGG + chr2_4:8432657-8432676 Msa0313120:CDS 30.0%
! AATTCTGAAAGGATTAGTGT+TGG + chr2_4:8432770-8432789 Msa0313120:CDS 30.0%
GTTGTTGTAATAGCAGAACT+TGG - chr2_4:8432036-8432055 None:intergenic 35.0%
ACATTGAGAAATGTTCCTGT+TGG + chr2_4:8432119-8432138 Msa0313120:CDS 35.0%
ACACCATCAAGTAATTCCTT+AGG + chr2_4:8432185-8432204 Msa0313120:CDS 35.0%
CACCATCAAGTAATTCCTTA+GGG + chr2_4:8432186-8432205 Msa0313120:CDS 35.0%
TTCCCTAAGGAATTACTTGA+TGG - chr2_4:8432191-8432210 None:intergenic 35.0%
TTGATAAAAAGAAGCAGCAG+AGG - chr2_4:8432309-8432328 None:intergenic 35.0%
!! TCTGCTGCTTCTTTTTATCA+AGG + chr2_4:8432308-8432327 Msa0313120:CDS 35.0%
!!! TTTTATCAAGGAGGTGTTGT+TGG + chr2_4:8432320-8432339 Msa0313120:CDS 35.0%
GAATGATTAAATGCCGCAAA+AGG - chr2_4:8432356-8432375 None:intergenic 35.0%
TTTGAACAGTCTCAGAATGT+TGG + chr2_4:8432416-8432435 Msa0313120:CDS 35.0%
CCTAGTTGAAAGAATTGTTG+CGG - chr2_4:8432554-8432573 None:intergenic 35.0%
CAACAATTCTTTCAACTAGG+TGG + chr2_4:8432554-8432573 Msa0313120:CDS 35.0%
TTCTTTCAACTAGGTGGTAA+TGG + chr2_4:8432560-8432579 Msa0313120:CDS 35.0%
ACTCCATAAAGATTGATCAG+AGG - chr2_4:8432717-8432736 None:intergenic 35.0%
ATCAACACCACTTCAACTAA+TGG + chr2_4:8432740-8432759 Msa0313120:CDS 35.0%
GTTGTTGTAATAGCAGAACT+TGG - chr2_4:8432036-8432055 None:intergenic 35.0%
ACATTGAGAAATGTTCCTGT+TGG + chr2_4:8432119-8432138 Msa0313120:CDS 35.0%
ACACCATCAAGTAATTCCTT+AGG + chr2_4:8432185-8432204 Msa0313120:CDS 35.0%
CACCATCAAGTAATTCCTTA+GGG + chr2_4:8432186-8432205 Msa0313120:CDS 35.0%
TTCCCTAAGGAATTACTTGA+TGG - chr2_4:8432191-8432210 None:intergenic 35.0%
TTGATAAAAAGAAGCAGCAG+AGG - chr2_4:8432309-8432328 None:intergenic 35.0%
!! TCTGCTGCTTCTTTTTATCA+AGG + chr2_4:8432308-8432327 Msa0313120:CDS 35.0%
!!! TTTTATCAAGGAGGTGTTGT+TGG + chr2_4:8432320-8432339 Msa0313120:CDS 35.0%
GAATGATTAAATGCCGCAAA+AGG - chr2_4:8432356-8432375 None:intergenic 35.0%
TTTGAACAGTCTCAGAATGT+TGG + chr2_4:8432416-8432435 Msa0313120:CDS 35.0%
CCTAGTTGAAAGAATTGTTG+CGG - chr2_4:8432554-8432573 None:intergenic 35.0%
CAACAATTCTTTCAACTAGG+TGG + chr2_4:8432554-8432573 Msa0313120:CDS 35.0%
TTCTTTCAACTAGGTGGTAA+TGG + chr2_4:8432560-8432579 Msa0313120:CDS 35.0%
ACTCCATAAAGATTGATCAG+AGG - chr2_4:8432717-8432736 None:intergenic 35.0%
ATCAACACCACTTCAACTAA+TGG + chr2_4:8432740-8432759 Msa0313120:CDS 35.0%
GTGTTGAATGAATCACACCT+AGG - chr2_4:8432014-8432033 None:intergenic 40.0%
! CATGTTTTGCAGAAGAAACG+AGG - chr2_4:8432074-8432093 None:intergenic 40.0%
TCTTCTGCAAAACATGCAGA+AGG + chr2_4:8432078-8432097 Msa0313120:CDS 40.0%
TTGAGAAATGTTCCTGTTGG+TGG + chr2_4:8432122-8432141 Msa0313120:CDS 40.0%
!! TGGTGTTGAGGATGAAGTTT+TGG - chr2_4:8432171-8432190 None:intergenic 40.0%
!! GGAATTACTTGATGGTGTTG+AGG - chr2_4:8432183-8432202 None:intergenic 40.0%
! GCTGCTTCTTTTTATCAAGG+AGG + chr2_4:8432311-8432330 Msa0313120:CDS 40.0%
AGTTGAAAGAATTGTTGCGG+CGG - chr2_4:8432551-8432570 None:intergenic 40.0%
CCGCAACAATTCTTTCAACT+AGG + chr2_4:8432551-8432570 Msa0313120:CDS 40.0%
!! TTTCAACTAGGTGGTAATGG+AGG + chr2_4:8432563-8432582 Msa0313120:CDS 40.0%
GGAATCAAATTCAAACCTCG+TGG - chr2_4:8432608-8432627 None:intergenic 40.0%
GTAGCAACAGAAGTAGTAGA+TGG - chr2_4:8432632-8432651 None:intergenic 40.0%
CCACTATTGATGAAGCTTTG+AGG - chr2_4:8432683-8432702 None:intergenic 40.0%
CCTCAAAGCTTCATCAATAG+TGG + chr2_4:8432680-8432699 Msa0313120:CDS 40.0%
GAGCCTCTGATCAATCTTTA+TGG + chr2_4:8432711-8432730 Msa0313120:CDS 40.0%
AACACCACTTCAACTAATGG+TGG + chr2_4:8432743-8432762 Msa0313120:CDS 40.0%
!! ATGGTGGTGGAAATTCTGAA+AGG + chr2_4:8432759-8432778 Msa0313120:CDS 40.0%
!! CTTCTTTGGCTCTGAATCAA+TGG + chr2_4:8432885-8432904 Msa0313120:CDS 40.0%
AATCAATGGCATGATCTGTC+AGG + chr2_4:8432899-8432918 Msa0313120:CDS 40.0%
ATCAATGGCATGATCTGTCA+GGG + chr2_4:8432900-8432919 Msa0313120:CDS 40.0%
GTGTTGAATGAATCACACCT+AGG - chr2_4:8432014-8432033 None:intergenic 40.0%
! CATGTTTTGCAGAAGAAACG+AGG - chr2_4:8432074-8432093 None:intergenic 40.0%
TCTTCTGCAAAACATGCAGA+AGG + chr2_4:8432078-8432097 Msa0313120:CDS 40.0%
TTGAGAAATGTTCCTGTTGG+TGG + chr2_4:8432122-8432141 Msa0313120:CDS 40.0%
!! TGGTGTTGAGGATGAAGTTT+TGG - chr2_4:8432171-8432190 None:intergenic 40.0%
!! GGAATTACTTGATGGTGTTG+AGG - chr2_4:8432183-8432202 None:intergenic 40.0%
! GCTGCTTCTTTTTATCAAGG+AGG + chr2_4:8432311-8432330 Msa0313120:CDS 40.0%
AGTTGAAAGAATTGTTGCGG+CGG - chr2_4:8432551-8432570 None:intergenic 40.0%
CCGCAACAATTCTTTCAACT+AGG + chr2_4:8432551-8432570 Msa0313120:CDS 40.0%
!! TTTCAACTAGGTGGTAATGG+AGG + chr2_4:8432563-8432582 Msa0313120:CDS 40.0%
GGAATCAAATTCAAACCTCG+TGG - chr2_4:8432608-8432627 None:intergenic 40.0%
GTAGCAACAGAAGTAGTAGA+TGG - chr2_4:8432632-8432651 None:intergenic 40.0%
CCACTATTGATGAAGCTTTG+AGG - chr2_4:8432683-8432702 None:intergenic 40.0%
CCTCAAAGCTTCATCAATAG+TGG + chr2_4:8432680-8432699 Msa0313120:CDS 40.0%
GAGCCTCTGATCAATCTTTA+TGG + chr2_4:8432711-8432730 Msa0313120:CDS 40.0%
AACACCACTTCAACTAATGG+TGG + chr2_4:8432743-8432762 Msa0313120:CDS 40.0%
!! ATGGTGGTGGAAATTCTGAA+AGG + chr2_4:8432759-8432778 Msa0313120:CDS 40.0%
!! CTTCTTTGGCTCTGAATCAA+TGG + chr2_4:8432885-8432904 Msa0313120:CDS 40.0%
AATCAATGGCATGATCTGTC+AGG + chr2_4:8432899-8432918 Msa0313120:CDS 40.0%
ATCAATGGCATGATCTGTCA+GGG + chr2_4:8432900-8432919 Msa0313120:CDS 40.0%
! GCAAAACATGCAGAAGGTAC+TGG + chr2_4:8432084-8432103 Msa0313120:CDS 45.0%
! AGAAATGTTCCTGTTGGTGG+TGG + chr2_4:8432125-8432144 Msa0313120:CDS 45.0%
AGACAGGGAAGAATTCCCTA+AGG - chr2_4:8432204-8432223 None:intergenic 45.0%
TAGGGAATTCTTCCCTGTCT+CGG + chr2_4:8432204-8432223 Msa0313120:CDS 45.0%
! TGGTTACATGTCGCCTTTTG+CGG + chr2_4:8432340-8432359 Msa0313120:CDS 45.0%
! TGTGCTGAAGAGTGTGTTGA+TGG - chr2_4:8432392-8432411 None:intergenic 45.0%
CAGTCTCAGAATGTTGGTGT+TGG + chr2_4:8432422-8432441 Msa0313120:CDS 45.0%
!! CAGAATGTTGGTGTTGGAGT+TGG + chr2_4:8432428-8432447 Msa0313120:CDS 45.0%
GCTCTTGTAAGCTCATCACA+AGG + chr2_4:8432512-8432531 Msa0313120:CDS 45.0%
CGTGGTTCAGAGGTAAACAT+TGG - chr2_4:8432590-8432609 None:intergenic 45.0%
ATGTTTACCTCTGAACCACG+AGG + chr2_4:8432590-8432609 Msa0313120:CDS 45.0%
ATTCAAACCTCGTGGTTCAG+AGG - chr2_4:8432600-8432619 None:intergenic 45.0%
GCAACAGAAGTAGTAGATGG+AGG - chr2_4:8432629-8432648 None:intergenic 45.0%
ACCACTTCAACTAATGGTGG+TGG + chr2_4:8432746-8432765 Msa0313120:CDS 45.0%
TCCACCACCATTAGTTGAAG+TGG - chr2_4:8432750-8432769 None:intergenic 45.0%
!! ATTAGTGTTGGTGCTGATGC+TGG + chr2_4:8432782-8432801 Msa0313120:CDS 45.0%
! GCAAAACATGCAGAAGGTAC+TGG + chr2_4:8432084-8432103 Msa0313120:CDS 45.0%
! AGAAATGTTCCTGTTGGTGG+TGG + chr2_4:8432125-8432144 Msa0313120:CDS 45.0%
AGACAGGGAAGAATTCCCTA+AGG - chr2_4:8432204-8432223 None:intergenic 45.0%
TAGGGAATTCTTCCCTGTCT+CGG + chr2_4:8432204-8432223 Msa0313120:CDS 45.0%
! TGGTTACATGTCGCCTTTTG+CGG + chr2_4:8432340-8432359 Msa0313120:CDS 45.0%
! TGTGCTGAAGAGTGTGTTGA+TGG - chr2_4:8432392-8432411 None:intergenic 45.0%
CAGTCTCAGAATGTTGGTGT+TGG + chr2_4:8432422-8432441 Msa0313120:CDS 45.0%
!! CAGAATGTTGGTGTTGGAGT+TGG + chr2_4:8432428-8432447 Msa0313120:CDS 45.0%
GCTCTTGTAAGCTCATCACA+AGG + chr2_4:8432512-8432531 Msa0313120:CDS 45.0%
CGTGGTTCAGAGGTAAACAT+TGG - chr2_4:8432590-8432609 None:intergenic 45.0%
ATGTTTACCTCTGAACCACG+AGG + chr2_4:8432590-8432609 Msa0313120:CDS 45.0%
ATTCAAACCTCGTGGTTCAG+AGG - chr2_4:8432600-8432619 None:intergenic 45.0%
GCAACAGAAGTAGTAGATGG+AGG - chr2_4:8432629-8432648 None:intergenic 45.0%
ACCACTTCAACTAATGGTGG+TGG + chr2_4:8432746-8432765 Msa0313120:CDS 45.0%
TCCACCACCATTAGTTGAAG+TGG - chr2_4:8432750-8432769 None:intergenic 45.0%
!! ATTAGTGTTGGTGCTGATGC+TGG + chr2_4:8432782-8432801 Msa0313120:CDS 45.0%
ATGGAGCAAGAACGTGGTGA+TGG + chr2_4:8431930-8431949 Msa0313120:CDS 50.0%
!! AAGAACGTGGTGATGGTGGA+AGG + chr2_4:8431937-8431956 Msa0313120:CDS 50.0%
!! CTAGGACACTTCTGAGGTTG+AGG - chr2_4:8431996-8432015 None:intergenic 50.0%
!! CTCAACCTCAGAAGTGTCCT+AGG + chr2_4:8431994-8432013 Msa0313120:CDS 50.0%
TCACACCTAGGACACTTCTG+AGG - chr2_4:8432002-8432021 None:intergenic 50.0%
AGAAGAAACGAGGCTGAGAG+AGG - chr2_4:8432064-8432083 None:intergenic 50.0%
!! TGCAGAAGGTACTGGACTCA+AGG + chr2_4:8432092-8432111 Msa0313120:CDS 50.0%
!! AGAAGGTACTGGACTCAAGG+TGG + chr2_4:8432095-8432114 Msa0313120:CDS 50.0%
TTACGACAACCACCACCAAC+AGG - chr2_4:8432137-8432156 None:intergenic 50.0%
!! TGTTGGTGGTGGTTGTCGTA+AGG + chr2_4:8432136-8432155 Msa0313120:CDS 50.0%
!! GTTGGTGGTGGTTGTCGTAA+GGG + chr2_4:8432137-8432156 Msa0313120:CDS 50.0%
TCGGTTGATTGTGGCAGTGT+TGG - chr2_4:8432230-8432249 None:intergenic 50.0%
GTCAACTGGTCGGTTGATTG+TGG - chr2_4:8432239-8432258 None:intergenic 50.0%
ATCAACCGACCAGTTGACCA+TGG + chr2_4:8432241-8432260 Msa0313120:CDS 50.0%
!!! GTTTTTAGCCATCGCAGCCA+TGG - chr2_4:8432261-8432280 None:intergenic 50.0%
!! GTTGGTGTTGGAGTTGGTGT+TGG + chr2_4:8432434-8432453 Msa0313120:CDS 50.0%
!! GTTGGAGTTGGTGTTGGTCT+TGG + chr2_4:8432440-8432459 Msa0313120:CDS 50.0%
TGAAAGAATTGTTGCGGCGG+TGG - chr2_4:8432548-8432567 None:intergenic 50.0%
!! GGGTAGTGGATCTGCTTCTT+TGG + chr2_4:8432871-8432890 Msa0313120:CDS 50.0%
ATGGAGCAAGAACGTGGTGA+TGG + chr2_4:8431930-8431949 Msa0313120:CDS 50.0%
!! AAGAACGTGGTGATGGTGGA+AGG + chr2_4:8431937-8431956 Msa0313120:CDS 50.0%
!! CTAGGACACTTCTGAGGTTG+AGG - chr2_4:8431996-8432015 None:intergenic 50.0%
!! CTCAACCTCAGAAGTGTCCT+AGG + chr2_4:8431994-8432013 Msa0313120:CDS 50.0%
TCACACCTAGGACACTTCTG+AGG - chr2_4:8432002-8432021 None:intergenic 50.0%
AGAAGAAACGAGGCTGAGAG+AGG - chr2_4:8432064-8432083 None:intergenic 50.0%
!! TGCAGAAGGTACTGGACTCA+AGG + chr2_4:8432092-8432111 Msa0313120:CDS 50.0%
!! AGAAGGTACTGGACTCAAGG+TGG + chr2_4:8432095-8432114 Msa0313120:CDS 50.0%
TTACGACAACCACCACCAAC+AGG - chr2_4:8432137-8432156 None:intergenic 50.0%
!! TGTTGGTGGTGGTTGTCGTA+AGG + chr2_4:8432136-8432155 Msa0313120:CDS 50.0%
!! GTTGGTGGTGGTTGTCGTAA+GGG + chr2_4:8432137-8432156 Msa0313120:CDS 50.0%
TCGGTTGATTGTGGCAGTGT+TGG - chr2_4:8432230-8432249 None:intergenic 50.0%
GTCAACTGGTCGGTTGATTG+TGG - chr2_4:8432239-8432258 None:intergenic 50.0%
ATCAACCGACCAGTTGACCA+TGG + chr2_4:8432241-8432260 Msa0313120:CDS 50.0%
!!! GTTTTTAGCCATCGCAGCCA+TGG - chr2_4:8432261-8432280 None:intergenic 50.0%
!! GTTGGTGTTGGAGTTGGTGT+TGG + chr2_4:8432434-8432453 Msa0313120:CDS 50.0%
!! GTTGGAGTTGGTGTTGGTCT+TGG + chr2_4:8432440-8432459 Msa0313120:CDS 50.0%
TGAAAGAATTGTTGCGGCGG+TGG - chr2_4:8432548-8432567 None:intergenic 50.0%
!! GGGTAGTGGATCTGCTTCTT+TGG + chr2_4:8432871-8432890 Msa0313120:CDS 50.0%
!! GAGCAAGAACGTGGTGATGG+TGG + chr2_4:8431933-8431952 Msa0313120:CDS 55.0%
!! AGTGTTGGTGCTGATGCTGG+TGG + chr2_4:8432785-8432804 Msa0313120:CDS 55.0%
GTAGCGGTGATGTTGCTGCT+GGG + chr2_4:8432849-8432868 Msa0313120:CDS 55.0%
TAGCGGTGATGTTGCTGCTG+GGG + chr2_4:8432850-8432869 Msa0313120:CDS 55.0%
!! GAGCAAGAACGTGGTGATGG+TGG + chr2_4:8431933-8431952 Msa0313120:CDS 55.0%
!! AGTGTTGGTGCTGATGCTGG+TGG + chr2_4:8432785-8432804 Msa0313120:CDS 55.0%
GTAGCGGTGATGTTGCTGCT+GGG + chr2_4:8432849-8432868 Msa0313120:CDS 55.0%
TAGCGGTGATGTTGCTGCTG+GGG + chr2_4:8432850-8432869 Msa0313120:CDS 55.0%
!! CGTGGTGATGGTGGAAGGAG+AGG + chr2_4:8431942-8431961 Msa0313120:CDS 60.0%
!! TGGCAGTGTTGGCCGAGACA+GGG - chr2_4:8432219-8432238 None:intergenic 60.0%
CGCAGCCATGGTCAACTGGT+CGG - chr2_4:8432249-8432268 None:intergenic 60.0%
CCATCGCAGCCATGGTCAAC+TGG - chr2_4:8432253-8432272 None:intergenic 60.0%
CCAGTTGACCATGGCTGCGA+TGG + chr2_4:8432250-8432269 Msa0313120:CDS 60.0%
TGTTGCGGCGGTGGACGATT+CGG - chr2_4:8432539-8432558 None:intergenic 60.0%
GCTGATGCTGGTGGTAGTCG+TGG + chr2_4:8432794-8432813 Msa0313120:CDS 60.0%
GCTGGTGGTAGTCGTGGTGT+TGG + chr2_4:8432800-8432819 Msa0313120:CDS 60.0%
!! GGTAGTCGTGGTGTTGGTGC+TGG + chr2_4:8432806-8432825 Msa0313120:CDS 60.0%
!! AGTCGTGGTGTTGGTGCTGG+TGG + chr2_4:8432809-8432828 Msa0313120:CDS 60.0%
! GGTAGCGGTGATGTTGCTGC+TGG + chr2_4:8432848-8432867 Msa0313120:CDS 60.0%
AGCGGTGATGTTGCTGCTGG+GGG + chr2_4:8432851-8432870 Msa0313120:CDS 60.0%
GATGTTGCTGCTGGGGGTAG+TGG + chr2_4:8432857-8432876 Msa0313120:CDS 60.0%
!! CGTGGTGATGGTGGAAGGAG+AGG + chr2_4:8431942-8431961 Msa0313120:CDS 60.0%
!! TGGCAGTGTTGGCCGAGACA+GGG - chr2_4:8432219-8432238 None:intergenic 60.0%
CGCAGCCATGGTCAACTGGT+CGG - chr2_4:8432249-8432268 None:intergenic 60.0%
CCATCGCAGCCATGGTCAAC+TGG - chr2_4:8432253-8432272 None:intergenic 60.0%
CCAGTTGACCATGGCTGCGA+TGG + chr2_4:8432250-8432269 Msa0313120:CDS 60.0%
TGTTGCGGCGGTGGACGATT+CGG - chr2_4:8432539-8432558 None:intergenic 60.0%
GCTGATGCTGGTGGTAGTCG+TGG + chr2_4:8432794-8432813 Msa0313120:CDS 60.0%
GCTGGTGGTAGTCGTGGTGT+TGG + chr2_4:8432800-8432819 Msa0313120:CDS 60.0%
!! GGTAGTCGTGGTGTTGGTGC+TGG + chr2_4:8432806-8432825 Msa0313120:CDS 60.0%
!! AGTCGTGGTGTTGGTGCTGG+TGG + chr2_4:8432809-8432828 Msa0313120:CDS 60.0%
! GGTAGCGGTGATGTTGCTGC+TGG + chr2_4:8432848-8432867 Msa0313120:CDS 60.0%
AGCGGTGATGTTGCTGCTGG+GGG + chr2_4:8432851-8432870 Msa0313120:CDS 60.0%
GATGTTGCTGCTGGGGGTAG+TGG + chr2_4:8432857-8432876 Msa0313120:CDS 60.0%
!! GTGGCAGTGTTGGCCGAGAC+AGG - chr2_4:8432220-8432239 None:intergenic 65.0%
!! GTTGGTGCTGGTGGTAGCCG+TGG + chr2_4:8432818-8432837 Msa0313120:CDS 65.0%
!! AGCCGTGGTGCTGGTGGTAG+CGG + chr2_4:8432833-8432852 Msa0313120:CDS 65.0%
CACCGCTACCACCAGCACCA+CGG - chr2_4:8432838-8432857 None:intergenic 65.0%
!! GTGGCAGTGTTGGCCGAGAC+AGG - chr2_4:8432220-8432239 None:intergenic 65.0%
!! GTTGGTGCTGGTGGTAGCCG+TGG + chr2_4:8432818-8432837 Msa0313120:CDS 65.0%
!! AGCCGTGGTGCTGGTGGTAG+CGG + chr2_4:8432833-8432852 Msa0313120:CDS 65.0%
CACCGCTACCACCAGCACCA+CGG - chr2_4:8432838-8432857 None:intergenic 65.0%
GCTGGTGGTAGCCGTGGTGC+TGG + chr2_4:8432824-8432843 Msa0313120:CDS 70.0%
! GGTGGTAGCCGTGGTGCTGG+TGG + chr2_4:8432827-8432846 Msa0313120:CDS 70.0%
GCTGGTGGTAGCCGTGGTGC+TGG + chr2_4:8432824-8432843 Msa0313120:CDS 70.0%
! GGTGGTAGCCGTGGTGCTGG+TGG + chr2_4:8432827-8432846 Msa0313120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 8431930 8432940 8431930 ID=Msa0313120;Name=Msa0313120
chr2_4 mRNA 8431930 8432940 8431930 ID=Msa0313120-mRNA-1;Parent=Msa0313120;Name=Msa0313120-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|336
chr2_4 exon 8431930 8432940 8431930 ID=Msa0313120-mRNA-1:exon:3229;Parent=Msa0313120-mRNA-1
chr2_4 CDS 8431930 8432940 8431930 ID=Msa0313120-mRNA-1:cds;Parent=Msa0313120-mRNA-1
Gene Sequence

>Msa0313120

ATGGAGCAAGAACGTGGTGATGGTGGAAGGAGAGGTGAGATGAGTAAGCATGTTCAAGCTCATCCTCAACCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCTCGTTTCTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACATTGAGAAATGTTCCTGTTGGTGGTGGTTGTCGTAAGGGAAAGAAATCCAAAACTTCATCCTCAACACCATCAAGTAATTCCTTAGGGAATTCTTCCCTGTCTCGGCCAACACTGCCACAATCAACCGACCAGTTGACCATGGCTGCGATGGCTAAAAACTCTTCTTCTGTTTTTGCTTCATTTTCCTCTGCTGCTTCTTTTTATCAAGGAGGTGTTGTTGGTTACATGTCGCCTTTTGCGGCATTTAATCATTCGTTGAATTCGAATCCATCAACACACTCTTCAGCACACACTTTTGAACAGTCTCAGAATGTTGGTGTTGGAGTTGGTGTTGGTCTTGGTTCTTCTTCAAATTTGAGCCTTTTACAAGGTTTCAATGTTGCTGCTGCTGCTCTTGTAAGCTCATCACAAGGACCGAATCGTCCACCGCCGCAACAATTCTTTCAACTAGGTGGTAATGGAGGACCAATGTTTACCTCTGAACCACGAGGTTTGAATTTGATTCCTCCATCTACTACTTCTGTTGCTACTGATTCTGCTACTTATAATGAAAGTTGGCCTCAAAGCTTCATCAATAGTGGTAACAACAGAGCCTCTGATCAATCTTTATGGAGTACTATCAACACCACTTCAACTAATGGTGGTGGAAATTCTGAAAGGATTAGTGTTGGTGCTGATGCTGGTGGTAGTCGTGGTGTTGGTGCTGGTGGTAGCCGTGGTGCTGGTGGTAGCGGTGATGTTGCTGCTGGGGGTAGTGGATCTGCTTCTTTGGCTCTGAATCAATGGCATGATCTGTCAGGGTTCAATCCTCCTCAGTGA

Protein sequence

>Msa0313120

MEQERGDGGRRGEMSKHVQAHPQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKKSKTSSSTPSSNSLGNSSLSRPTLPQSTDQLTMAAMAKNSSSVFASFSSAASFYQGGVVGYMSPFAAFNHSLNSNPSTHSSAHTFEQSQNVGVGVGVGLGSSSNLSLLQGFNVAAAALVSSSQGPNRPPPQQFFQLGGNGGPMFTSEPRGLNLIPPSTTSVATDSATYNESWPQSFINSGNNRASDQSLWSTINTTSTNGGGNSERISVGADAGGSRGVGAGGSRGAGGSGDVAAGGSGSASLALNQWHDLSGFNPPQ*