Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313340 | XP_003593656.1 | 94.822 | 309 | 14 | 2 | 1 | 308 | 1 | 308 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313340 | sp|O49459|NAC73_ARATH | 64.069 | 231 | 72 | 3 | 1 | 222 | 1 | 229 | 2.76e-106 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0313340 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313340 | MtrunA17_Chr2g0282871 | 94.822 | 309 | 14 | 2 | 1 | 308 | 1 | 308 | 0.0 | 610 |
| Msa0313340 | MtrunA17_Chr4g0046431 | 62.577 | 326 | 85 | 9 | 1 | 302 | 1 | 313 | 1.51e-137 | 392 |
| Msa0313340 | MtrunA17_Chr8g0367761 | 69.912 | 226 | 47 | 2 | 1 | 208 | 1 | 223 | 9.27e-115 | 332 |
| Msa0313340 | MtrunA17_Chr4g0040541 | 59.155 | 284 | 101 | 7 | 1 | 279 | 1 | 274 | 5.50e-110 | 320 |
| Msa0313340 | MtrunA17_Chr2g0324961 | 58.219 | 292 | 109 | 6 | 1 | 290 | 1 | 281 | 4.63e-107 | 313 |
| Msa0313340 | MtrunA17_Chr8g0389661 | 61.572 | 229 | 74 | 5 | 8 | 226 | 3 | 227 | 8.40e-89 | 273 |
| Msa0313340 | MtrunA17_Chr5g0422431 | 58.763 | 194 | 77 | 2 | 27 | 220 | 34 | 224 | 2.23e-73 | 232 |
| Msa0313340 | MtrunA17_Chr1g0198751 | 50.633 | 237 | 111 | 4 | 2 | 235 | 7 | 240 | 5.00e-72 | 230 |
| Msa0313340 | MtrunA17_Chr7g0227071 | 56.757 | 185 | 73 | 3 | 31 | 212 | 35 | 215 | 1.99e-67 | 218 |
| Msa0313340 | MtrunA17_Chr1g0198741 | 52.756 | 127 | 59 | 1 | 108 | 233 | 7 | 133 | 5.83e-35 | 128 |
| Msa0313340 | MtrunA17_Chr6g0484441 | 32.317 | 164 | 92 | 6 | 53 | 213 | 5 | 152 | 3.05e-15 | 75.1 |
| Msa0313340 | MtrunA17_Chr7g0217711 | 32.075 | 159 | 91 | 4 | 36 | 193 | 2 | 144 | 1.32e-14 | 70.9 |
| Msa0313340 | MtrunA17_Chr7g0217721 | 30.457 | 197 | 120 | 4 | 36 | 231 | 2 | 182 | 1.37e-14 | 73.6 |
| Msa0313340 | MtrunA17_Chr7g0253011 | 31.667 | 180 | 92 | 9 | 46 | 212 | 10 | 171 | 1.05e-13 | 70.9 |
| Msa0313340 | MtrunA17_Chr3g0091921 | 34.507 | 142 | 76 | 5 | 53 | 193 | 16 | 141 | 2.25e-13 | 69.3 |
| Msa0313340 | MtrunA17_Chr1g0147421 | 31.325 | 166 | 94 | 6 | 53 | 213 | 27 | 177 | 2.59e-13 | 69.7 |
| Msa0313340 | MtrunA17_Chr7g0214071 | 34.014 | 147 | 69 | 8 | 53 | 193 | 15 | 139 | 1.82e-12 | 66.2 |
| Msa0313340 | MtrunA17_Chr3g0139331 | 31.288 | 163 | 91 | 6 | 53 | 210 | 11 | 157 | 2.99e-12 | 66.6 |
| Msa0313340 | MtrunA17_Chr8g0385991 | 32.667 | 150 | 78 | 8 | 48 | 193 | 9 | 139 | 1.24e-11 | 63.5 |
| Msa0313340 | MtrunA17_Chr2g0316971 | 31.548 | 168 | 88 | 8 | 53 | 210 | 23 | 173 | 1.88e-11 | 64.3 |
| Msa0313340 | MtrunA17_Chr8g0345701 | 33.333 | 156 | 75 | 8 | 52 | 192 | 6 | 147 | 5.13e-11 | 60.5 |
| Msa0313340 | MtrunA17_Chr1g0183741 | 27.014 | 211 | 121 | 8 | 52 | 251 | 9 | 197 | 5.92e-11 | 62.0 |
| Msa0313340 | MtrunA17_Chr8g0364791 | 29.412 | 187 | 102 | 9 | 50 | 223 | 3 | 172 | 6.34e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313340 | AT4G28500.1 | 64.069 | 231 | 72 | 3 | 1 | 222 | 1 | 229 | 2.81e-107 | 315 |
| Msa0313340 | AT1G28470.1 | 58.246 | 285 | 79 | 7 | 1 | 249 | 1 | 281 | 3.79e-107 | 315 |
| Msa0313340 | AT4G29230.3 | 62.332 | 223 | 69 | 3 | 6 | 217 | 2 | 220 | 3.06e-92 | 281 |
| Msa0313340 | AT4G29230.1 | 62.332 | 223 | 69 | 3 | 6 | 217 | 2 | 220 | 1.13e-91 | 281 |
| Msa0313340 | AT4G29230.2 | 61.435 | 223 | 70 | 3 | 6 | 217 | 2 | 219 | 3.46e-90 | 278 |
| Msa0313340 | AT5G56620.1 | 59.545 | 220 | 74 | 5 | 9 | 217 | 3 | 218 | 7.46e-83 | 255 |
| Msa0313340 | AT5G56620.2 | 59.545 | 220 | 74 | 5 | 9 | 217 | 3 | 218 | 8.68e-83 | 256 |
| Msa0313340 | AT5G56620.3 | 63.959 | 197 | 57 | 4 | 32 | 217 | 25 | 218 | 9.05e-83 | 256 |
| Msa0313340 | AT1G25580.1 | 56.021 | 191 | 75 | 4 | 27 | 217 | 34 | 215 | 1.14e-68 | 221 |
| Msa0313340 | AT5G14490.2 | 50.000 | 200 | 95 | 4 | 30 | 228 | 34 | 229 | 8.24e-56 | 182 |
| Msa0313340 | AT5G14490.1 | 50.000 | 200 | 95 | 4 | 30 | 228 | 37 | 232 | 1.67e-55 | 184 |
| Msa0313340 | AT5G14490.4 | 50.000 | 200 | 95 | 4 | 30 | 228 | 34 | 229 | 1.83e-55 | 183 |
| Msa0313340 | AT5G14490.3 | 50.000 | 200 | 95 | 4 | 30 | 228 | 37 | 232 | 2.57e-55 | 184 |
| Msa0313340 | AT3G01600.1 | 48.925 | 186 | 91 | 3 | 30 | 214 | 34 | 216 | 5.47e-50 | 170 |
| Msa0313340 | AT3G04060.1 | 32.418 | 182 | 97 | 7 | 43 | 215 | 10 | 174 | 4.67e-19 | 86.7 |
| Msa0313340 | AT5G18270.2 | 33.880 | 183 | 92 | 10 | 43 | 215 | 12 | 175 | 2.20e-16 | 79.0 |
| Msa0313340 | AT5G18270.1 | 33.880 | 183 | 92 | 10 | 43 | 215 | 12 | 175 | 3.74e-16 | 78.2 |
| Msa0313340 | AT3G18400.1 | 33.099 | 142 | 78 | 5 | 53 | 193 | 5 | 130 | 3.46e-14 | 72.4 |
| Msa0313340 | AT1G33060.1 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 1.60e-13 | 71.2 |
| Msa0313340 | AT1G33060.2 | 30.645 | 186 | 94 | 9 | 40 | 212 | 11 | 174 | 1.62e-13 | 71.2 |
| Msa0313340 | AT4G35580.1 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 3.97e-13 | 70.1 |
| Msa0313340 | AT4G35580.2 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 4.55e-13 | 70.1 |
| Msa0313340 | AT4G35580.3 | 31.551 | 187 | 93 | 10 | 46 | 219 | 2 | 166 | 4.89e-13 | 69.7 |
| Msa0313340 | AT2G24430.2 | 28.994 | 169 | 98 | 6 | 52 | 214 | 15 | 167 | 1.26e-11 | 64.7 |
| Msa0313340 | AT2G24430.1 | 28.994 | 169 | 98 | 6 | 52 | 214 | 15 | 167 | 1.26e-11 | 64.7 |
| Msa0313340 | AT1G01720.1 | 30.464 | 151 | 83 | 6 | 47 | 194 | 1 | 132 | 2.21e-11 | 63.9 |
| Msa0313340 | AT1G76420.1 | 29.834 | 181 | 101 | 8 | 52 | 224 | 21 | 183 | 3.49e-11 | 63.5 |
| Msa0313340 | AT2G33480.2 | 30.108 | 186 | 96 | 10 | 42 | 221 | 8 | 165 | 4.33e-11 | 62.8 |
| Msa0313340 | AT2G33480.1 | 29.944 | 177 | 92 | 9 | 53 | 221 | 15 | 167 | 5.74e-11 | 62.4 |
Find 77 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATAACCATTTACATTTA+TGG | 0.090153 | 2_4:+8686185 | Msa0313340:three_prime_UTR |
| ATTCCATATATTTGGAATTT+TGG | 0.093579 | 2_4:+8686239 | Msa0313340:three_prime_UTR |
| GTTGGCTTATTCCATATATT+TGG | 0.132174 | 2_4:+8686231 | Msa0313340:three_prime_UTR |
| TGAATCTCTTACATTGTTAA+TGG | 0.179782 | 2_4:-8685866 | None:intergenic |
| CATCCAAAATTCCAAATATA+TGG | 0.268465 | 2_4:-8686242 | None:intergenic |
| TCCAATCCCATAAATGTAAA+TGG | 0.274697 | 2_4:-8686192 | None:intergenic |
| AGATAACCATTTACATTTAT+GGG | 0.277473 | 2_4:+8686186 | Msa0313340:three_prime_UTR |
| GAAACAAGATGGCACAAAAC+TGG | 0.293534 | 2_4:+8685634 | Msa0313340:CDS |
| TCCAGTACTTCTACATCATT+TGG | 0.307012 | 2_4:-8683978 | None:intergenic |
| TTCAATCAGAGTCAATATTA+TGG | 0.321896 | 2_4:-8686293 | None:intergenic |
| ACCATTTACATTTATGGGAT+TGG | 0.339642 | 2_4:+8686191 | Msa0313340:three_prime_UTR |
| AACTATTATTCGTTTATCAA+TGG | 0.380322 | 2_4:+8686071 | Msa0313340:CDS |
| ATCACCCAGTTAGTCTTCTC+TGG | 0.385881 | 2_4:-8685745 | None:intergenic |
| CTTAATCTCTCCTACAATAC+TGG | 0.389172 | 2_4:-8683552 | None:intergenic |
| TTATTAGGGACCAGTATTGT+AGG | 0.389395 | 2_4:+8683542 | Msa0313340:intron |
| TGTAGAAGTACTGGAGCATT+TGG | 0.390413 | 2_4:+8683986 | Msa0313340:CDS |
| CATTTATGGGATTGGAATGA+AGG | 0.400089 | 2_4:+8686199 | Msa0313340:three_prime_UTR |
| TCACTTTGAACAGCCATGTT+TGG | 0.400365 | 2_4:-8686045 | None:intergenic |
| GAAAACCAGAGAAGACTAAC+TGG | 0.406375 | 2_4:+8685740 | Msa0313340:CDS |
| AGCAATAGCGAGCACAGTTT+GGG | 0.420561 | 2_4:+8683304 | None:intergenic |
| GGGTGGGGTTAATGAATTGC+CGG | 0.422248 | 2_4:+8683929 | Msa0313340:intron |
| CATGTTGTCTAGGCTGTGTC+TGG | 0.424066 | 2_4:-8685837 | None:intergenic |
| CACATTAAGAGCTACATTGT+TGG | 0.427511 | 2_4:-8685941 | None:intergenic |
| CCCAAATGATGTAGAAGTAC+TGG | 0.431235 | 2_4:+8683977 | Msa0313340:CDS |
| GAGCAATAGCGAGCACAGTT+TGG | 0.431280 | 2_4:+8683303 | None:intergenic |
| GTAGGAGAGATTAAGAACTA+TGG | 0.446677 | 2_4:+8683560 | Msa0313340:exon |
| ATATGCATGTTGGTCATAGC+AGG | 0.451891 | 2_4:+8685998 | Msa0313340:CDS |
| GAGTTCATACCAACGCTTCA+AGG | 0.459148 | 2_4:+8684056 | Msa0313340:CDS |
| CCAGTACTTCTACATCATTT+GGG | 0.463519 | 2_4:-8683977 | None:intergenic |
| GGGTCAAATTTCACTCCAGC+TGG | 0.465906 | 2_4:-8683957 | None:intergenic |
| CTTCTTCATTCATACCAAGA+TGG | 0.471328 | 2_4:-8685777 | None:intergenic |
| GCCGCATGAGGGGCATTCAA+TGG | 0.476343 | 2_4:-8683664 | None:intergenic |
| TACACCAACTATTGCAAAGA+AGG | 0.482059 | 2_4:+8685718 | Msa0313340:CDS |
| TGCTATGACCAACATGCATA+TGG | 0.484398 | 2_4:-8685996 | None:intergenic |
| CCTTCGAAAGCATACACAAC+AGG | 0.484981 | 2_4:+8685568 | Msa0313340:CDS |
| CCAACGCTTCAAGGAGAGAA+TGG | 0.494652 | 2_4:+8684065 | Msa0313340:CDS |
| GAATGAAGGAAGGAATAAGT+TGG | 0.496812 | 2_4:+8686213 | Msa0313340:three_prime_UTR |
| GAATTGCCGGGGTTACCAGC+TGG | 0.498475 | 2_4:+8683942 | Msa0313340:CDS |
| ATTGCAGGAGTTAGCAAAGA+TGG | 0.500465 | 2_4:+8685520 | Msa0313340:intron |
| TGCTGGAGAGAAAGTAACAT+TGG | 0.504401 | 2_4:+8686115 | Msa0313340:exon |
| CCATTCTCTCCTTGAAGCGT+TGG | 0.505404 | 2_4:-8684065 | None:intergenic |
| AAATCCCTTCACAACACCAT+TGG | 0.513981 | 2_4:-8685677 | None:intergenic |
| CCTGTTGTGTATGCTTTCGA+AGG | 0.514740 | 2_4:-8685568 | None:intergenic |
| AAAATAATCAACAAAGGAAG+TGG | 0.515719 | 2_4:+8685895 | Msa0313340:CDS |
| TGCAAACAAAGTAAGAGTGC+TGG | 0.518334 | 2_4:+8686098 | Msa0313340:CDS |
| TTCAATATTATGGCCGCATG+AGG | 0.518407 | 2_4:-8683676 | None:intergenic |
| ATGGAATTACCATGTTGTCT+AGG | 0.524147 | 2_4:-8685847 | None:intergenic |
| AACATGGCTGTTCAAAGTGA+TGG | 0.524451 | 2_4:+8686048 | Msa0313340:CDS |
| TATGGGATTGGAATGAAGGA+AGG | 0.524998 | 2_4:+8686203 | Msa0313340:three_prime_UTR |
| ACACACCCAGCACAATTACC+AGG | 0.525873 | 2_4:+8684098 | Msa0313340:CDS |
| ATTAAGAGCTACATTGTTGG+AGG | 0.531511 | 2_4:-8685938 | None:intergenic |
| GGTGGGGTTAATGAATTGCC+GGG | 0.531866 | 2_4:+8683930 | Msa0313340:CDS |
| TCAATATTATGGCCGCATGA+GGG | 0.537622 | 2_4:-8683675 | None:intergenic |
| AAGAAGGAATTGAAACAAGA+TGG | 0.540463 | 2_4:+8685623 | Msa0313340:CDS |
| ATCAACAAAGGAAGTGGCCA+TGG | 0.542226 | 2_4:+8685901 | Msa0313340:CDS |
| GTGATGCATCAATACCATCT+TGG | 0.542364 | 2_4:+8685763 | Msa0313340:CDS |
| ATGTTTGGTATAATTAGTTG+TGG | 0.542896 | 2_4:-8686030 | None:intergenic |
| ATGAATGAAGAAGAAAGAGA+TGG | 0.549873 | 2_4:+8685787 | Msa0313340:CDS |
| AAACAAGATGGCACAAAACT+GGG | 0.551473 | 2_4:+8685635 | Msa0313340:CDS |
| TTCACTCCAGCTGGTAACCC+CGG | 0.559582 | 2_4:-8683948 | None:intergenic |
| CAATATTATGGCCGCATGAG+GGG | 0.560022 | 2_4:-8683674 | None:intergenic |
| AAGGTTCACACTGATGAAGA+AGG | 0.564034 | 2_4:+8685607 | Msa0313340:CDS |
| AGAAGTACTGGAGCATTTGG+AGG | 0.564398 | 2_4:+8683989 | Msa0313340:CDS |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 2_4:+8685588 | Msa0313340:CDS |
| CAACAATGTAGCTCTTAATG+TGG | 0.583204 | 2_4:+8685942 | Msa0313340:CDS |
| GGTATGAACTCATCAATAAG+TGG | 0.587548 | 2_4:-8684044 | None:intergenic |
| CAGACACAGCCTAGACAACA+TGG | 0.593480 | 2_4:+8685838 | Msa0313340:CDS |
| AATTATGACCATATGCATGT+TGG | 0.599378 | 2_4:+8685988 | Msa0313340:CDS |
| ACCATTGAATGCCCCTCATG+CGG | 0.616642 | 2_4:+8683663 | Msa0313340:CDS |
| ACAACTAATTATACCAAACA+TGG | 0.621621 | 2_4:+8686032 | Msa0313340:CDS |
| AAGCATACACAACAGGAACA+AGG | 0.635238 | 2_4:+8685575 | Msa0313340:CDS |
| AGGCTGCACTGTTATTACCA+TGG | 0.642479 | 2_4:-8685918 | None:intergenic |
| AGAGATTAAGAACTATGGCA+TGG | 0.652933 | 2_4:+8683565 | Msa0313340:exon |
| TATGCATGTTGGTCATAGCA+GGG | 0.654809 | 2_4:+8685999 | Msa0313340:CDS |
| AAGGAAAAGTGTGAGCACAC+AGG | 0.674376 | 2_4:+8683383 | Msa0313340:five_prime_UTR |
| GTGGGGTTAATGAATTGCCG+GGG | 0.695609 | 2_4:+8683931 | Msa0313340:CDS |
| AAAACCAGAGAAGACTAACT+GGG | 0.696934 | 2_4:+8685741 | Msa0313340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATAGATTTTAATTATA+AGG | + | chr2_4:8684318-8684337 | Msa0313340:intron | 10.0% |
| !!! | GATATATTTGTTATTTTTTT+TGG | + | chr2_4:8685102-8685121 | Msa0313340:intron | 10.0% |
| !! | GAAAAATATGAAAGAAAAAA+AGG | - | chr2_4:8683479-8683498 | None:intergenic | 15.0% |
| !!! | CATATTTTGCTTTATTATTA+GGG | + | chr2_4:8683528-8683547 | Msa0313340:intron | 15.0% |
| !! | ATTAATTAAATGTAAAAACC+TGG | - | chr2_4:8684119-8684138 | None:intergenic | 15.0% |
| !! | ATTAAAATGATTTAGAGATT+TGG | + | chr2_4:8684167-8684186 | Msa0313340:intron | 15.0% |
| !!! | AATAGATTTTAATTATAAGG+CGG | + | chr2_4:8684321-8684340 | Msa0313340:intron | 15.0% |
| !! | AAAGAAAATTATTTGTCAAT+TGG | + | chr2_4:8684439-8684458 | Msa0313340:intron | 15.0% |
| !! | AAGAAAATTATTTGTCAATT+GGG | + | chr2_4:8684440-8684459 | Msa0313340:intron | 15.0% |
| !! | TGAATTACTAATAATAAAGA+AGG | - | chr2_4:8685191-8685210 | None:intergenic | 15.0% |
| !! | AGAAATATATTACTTGAAAA+CGG | + | chr2_4:8685405-8685424 | Msa0313340:intron | 15.0% |
| !! | TATGAAAAAATAATCAACAA+AGG | + | chr2_4:8685889-8685908 | Msa0313340:CDS | 15.0% |
| !! | TAAAGCAAAATATGGAAAAA+GGG | - | chr2_4:8683522-8683541 | None:intergenic | 20.0% |
| !! | ATAAAGCAAAATATGGAAAA+AGG | - | chr2_4:8683523-8683542 | None:intergenic | 20.0% |
| !! | CCTAATAATAAAGCAAAATA+TGG | - | chr2_4:8683530-8683549 | None:intergenic | 20.0% |
| !!! | CCATATTTTGCTTTATTATT+AGG | + | chr2_4:8683527-8683546 | Msa0313340:intron | 20.0% |
| !!! | GATTTTTTGCTTCAATATTA+TGG | - | chr2_4:8683689-8683708 | None:intergenic | 20.0% |
| !! | TAATATTGAAGCAAAAAATC+AGG | + | chr2_4:8683689-8683708 | Msa0313340:CDS | 20.0% |
| !! | AAAAATCAGGTATTAATCAA+TGG | + | chr2_4:8683702-8683721 | Msa0313340:intron | 20.0% |
| !! | AATTTGATGAATTGATACAT+AGG | + | chr2_4:8683908-8683927 | Msa0313340:intron | 20.0% |
| !! | ATTTGATGAATTGATACATA+GGG | + | chr2_4:8683909-8683928 | Msa0313340:intron | 20.0% |
| !!! | ATTAATTAATTTGATGCATG+CGG | - | chr2_4:8684255-8684274 | None:intergenic | 20.0% |
| !! | AGAAAATTATTTGTCAATTG+GGG | + | chr2_4:8684441-8684460 | Msa0313340:intron | 20.0% |
| !!! | TTTTCATAAGTTAGTAGAAA+GGG | - | chr2_4:8684482-8684501 | None:intergenic | 20.0% |
| !!! | ATTTTCATAAGTTAGTAGAA+AGG | - | chr2_4:8684483-8684502 | None:intergenic | 20.0% |
| !!! | TGATTATTTTTTGTGAATTG+TGG | + | chr2_4:8684547-8684566 | Msa0313340:intron | 20.0% |
| !!! | TAATTTGTTACTGTAACATT+GGG | + | chr2_4:8684835-8684854 | Msa0313340:intron | 20.0% |
| !!! | TTATTTTTTTTGGTGTGAAT+TGG | + | chr2_4:8685112-8685131 | Msa0313340:intron | 20.0% |
| !!! | TATTTTTTTTGGTGTGAATT+GGG | + | chr2_4:8685113-8685132 | Msa0313340:intron | 20.0% |
| !!! | ATTTTTACAAAATTGATGTG+CGG | + | chr2_4:8685382-8685401 | Msa0313340:intron | 20.0% |
| !! | GACAATATTACATTGAAAAA+AGG | + | chr2_4:8685432-8685451 | Msa0313340:intron | 20.0% |
| !! | AACTATTATTCGTTTATCAA+TGG | + | chr2_4:8686071-8686090 | Msa0313340:CDS | 20.0% |
| !! | AGATAACCATTTACATTTAT+GGG | + | chr2_4:8686186-8686205 | Msa0313340:three_prime_UTR | 20.0% |
| !!! | ATTCCATATATTTGGAATTT+TGG | + | chr2_4:8686239-8686258 | Msa0313340:three_prime_UTR | 20.0% |
| ! | AAAGCTATAGTTGTATCTTT+CGG | - | chr2_4:8683455-8683474 | None:intergenic | 25.0% |
| ! | ATCTTAAATATATCCTGCTA+AGG | + | chr2_4:8683752-8683771 | Msa0313340:intron | 25.0% |
| ! | CATTGCATGTGTTAATTATT+GGG | + | chr2_4:8684204-8684223 | Msa0313340:intron | 25.0% |
| !!! | TCAAATTGCTATTGATGTTT+TGG | - | chr2_4:8684802-8684821 | None:intergenic | 25.0% |
| ! | GTTACAGTAACAAATTACTT+AGG | - | chr2_4:8684832-8684851 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTACTGTAACAT+TGG | + | chr2_4:8684834-8684853 | Msa0313340:intron | 25.0% |
| ! | AAGTCTAATAAAAACTCCTT+TGG | + | chr2_4:8684994-8685013 | Msa0313340:intron | 25.0% |
| ! | GTGATACATTATTAATCCAA+AGG | - | chr2_4:8685013-8685032 | None:intergenic | 25.0% |
| ! | GTACCAAAAGAAATAGAATT+GGG | - | chr2_4:8685035-8685054 | None:intergenic | 25.0% |
| ! | TGTACCAAAAGAAATAGAAT+TGG | - | chr2_4:8685036-8685055 | None:intergenic | 25.0% |
| ! | ATAACACTATATGATGAACA+TGG | - | chr2_4:8685250-8685269 | None:intergenic | 25.0% |
| ! | ATTGTTACGTAAAATATTGC+AGG | + | chr2_4:8685505-8685524 | Msa0313340:intron | 25.0% |
| ! | TGAATCTCTTACATTGTTAA+TGG | - | chr2_4:8685869-8685888 | None:intergenic | 25.0% |
| ! | AAAATAATCAACAAAGGAAG+TGG | + | chr2_4:8685895-8685914 | Msa0313340:CDS | 25.0% |
| ! | ATGTTTGGTATAATTAGTTG+TGG | - | chr2_4:8686033-8686052 | None:intergenic | 25.0% |
| ! | ACAACTAATTATACCAAACA+TGG | + | chr2_4:8686032-8686051 | Msa0313340:CDS | 25.0% |
| ! | CAGATAACCATTTACATTTA+TGG | + | chr2_4:8686185-8686204 | Msa0313340:three_prime_UTR | 25.0% |
| ! | CATCCAAAATTCCAAATATA+TGG | - | chr2_4:8686245-8686264 | None:intergenic | 25.0% |
| !! | GGAATTTTGGATGTATTATA+TGG | + | chr2_4:8686252-8686271 | Msa0313340:three_prime_UTR | 25.0% |
| !! | ATTTTGGATGTATTATATGG+TGG | + | chr2_4:8686255-8686274 | Msa0313340:three_prime_UTR | 25.0% |
| ! | TTCAATCAGAGTCAATATTA+TGG | - | chr2_4:8686296-8686315 | None:intergenic | 25.0% |
| AAGCTATAGTTGTATCTTTC+GGG | - | chr2_4:8683454-8683473 | None:intergenic | 30.0% | |
| GGTGAGAAATTAAATACAGA+TGG | - | chr2_4:8683501-8683520 | None:intergenic | 30.0% | |
| ! | GATTCAACAAAGTCTTATGT+TGG | - | chr2_4:8683810-8683829 | None:intergenic | 30.0% |
| GCATTGCATGTGTTAATTAT+TGG | + | chr2_4:8684203-8684222 | Msa0313340:intron | 30.0% | |
| TTTCTTTGCTTGCAATTGTA+AGG | - | chr2_4:8684409-8684428 | None:intergenic | 30.0% | |
| TGTGAATTGTGGAAAAAACA+TGG | + | chr2_4:8684558-8684577 | Msa0313340:intron | 30.0% | |
| AAACCAATGAATGCTTGAAT+TGG | + | chr2_4:8684667-8684686 | Msa0313340:intron | 30.0% | |
| ! | AAAAATTGTTCCCCAAGTTT+TGG | + | chr2_4:8684886-8684905 | Msa0313340:intron | 30.0% |
| !!! | TTTTTTTGACAAGTCACTCT+TGG | + | chr2_4:8684960-8684979 | Msa0313340:intron | 30.0% |
| !! | TCACCCAATTCTATTTCTTT+TGG | + | chr2_4:8685029-8685048 | Msa0313340:intron | 30.0% |
| TGGTGGAAATAGAGTAATTA+AGG | - | chr2_4:8685230-8685249 | None:intergenic | 30.0% | |
| TCATCATATAGTGTTATGCA+TGG | + | chr2_4:8685253-8685272 | Msa0313340:intron | 30.0% | |
| AATTTGCAAAGGAACTCATA+TGG | - | chr2_4:8685300-8685319 | None:intergenic | 30.0% | |
| AAGTGAAGAAGAATTTGCAA+AGG | - | chr2_4:8685311-8685330 | None:intergenic | 30.0% | |
| !!! | AAATTCGCCACTTTTTTCAT+AGG | + | chr2_4:8685545-8685564 | Msa0313340:CDS | 30.0% |
| AAGAAGGAATTGAAACAAGA+TGG | + | chr2_4:8685623-8685642 | Msa0313340:CDS | 30.0% | |
| !!! | ACTAGAGCAATTTTTTCCAA+TGG | + | chr2_4:8685661-8685680 | Msa0313340:CDS | 30.0% |
| ! | TTTTCCTTCTTTGCAATAGT+TGG | - | chr2_4:8685725-8685744 | None:intergenic | 30.0% |
| ATGAATGAAGAAGAAAGAGA+TGG | + | chr2_4:8685787-8685806 | Msa0313340:CDS | 30.0% | |
| AATTATGACCATATGCATGT+TGG | + | chr2_4:8685988-8686007 | Msa0313340:CDS | 30.0% | |
| ACCATTTACATTTATGGGAT+TGG | + | chr2_4:8686191-8686210 | Msa0313340:three_prime_UTR | 30.0% | |
| TCCAATCCCATAAATGTAAA+TGG | - | chr2_4:8686195-8686214 | None:intergenic | 30.0% | |
| ! | GTTGGCTTATTCCATATATT+TGG | + | chr2_4:8686231-8686250 | Msa0313340:three_prime_UTR | 30.0% |
| TTATTAGGGACCAGTATTGT+AGG | + | chr2_4:8683542-8683561 | Msa0313340:intron | 35.0% | |
| CTTAATCTCTCCTACAATAC+TGG | - | chr2_4:8683555-8683574 | None:intergenic | 35.0% | |
| GTAGGAGAGATTAAGAACTA+TGG | + | chr2_4:8683560-8683579 | Msa0313340:exon | 35.0% | |
| AGAGATTAAGAACTATGGCA+TGG | + | chr2_4:8683565-8683584 | Msa0313340:exon | 35.0% | |
| TAAATATATCCTGCTAAGGC+CGG | + | chr2_4:8683756-8683775 | Msa0313340:intron | 35.0% | |
| TGATGAATTGATACATAGGG+TGG | + | chr2_4:8683912-8683931 | Msa0313340:intron | 35.0% | |
| GATGAATTGATACATAGGGT+GGG | + | chr2_4:8683913-8683932 | Msa0313340:intron | 35.0% | |
| ATGAATTGATACATAGGGTG+GGG | + | chr2_4:8683914-8683933 | Msa0313340:intron | 35.0% | |
| CCAGTACTTCTACATCATTT+GGG | - | chr2_4:8683980-8683999 | None:intergenic | 35.0% | |
| TCCAGTACTTCTACATCATT+TGG | - | chr2_4:8683981-8684000 | None:intergenic | 35.0% | |
| GGTATGAACTCATCAATAAG+TGG | - | chr2_4:8684047-8684066 | None:intergenic | 35.0% | |
| AAAAACCTGGTAATTGTGCT+GGG | - | chr2_4:8684106-8684125 | None:intergenic | 35.0% | |
| TAAAAACCTGGTAATTGTGC+TGG | - | chr2_4:8684107-8684126 | None:intergenic | 35.0% | |
| AACACATGCAATGCATCAAA+CGG | - | chr2_4:8684197-8684216 | None:intergenic | 35.0% | |
| ! | TAGAGAGCATAAATGTTCTG+TGG | - | chr2_4:8684358-8684377 | None:intergenic | 35.0% |
| TTGCCAATTCAAGCATTCAT+TGG | - | chr2_4:8684673-8684692 | None:intergenic | 35.0% | |
| TACTTGCTTTCCAAAACTTG+GGG | - | chr2_4:8684899-8684918 | None:intergenic | 35.0% | |
| GTACTTGCTTTCCAAAACTT+GGG | - | chr2_4:8684900-8684919 | None:intergenic | 35.0% | |
| !!! | GCAAGTACCTTTTTTTGTGT+CGG | + | chr2_4:8684912-8684931 | Msa0313340:intron | 35.0% |
| !!! | CAAGTACCTTTTTTTGTGTC+GGG | + | chr2_4:8684913-8684932 | Msa0313340:intron | 35.0% |
| AAACATCCCGACACAAAAAA+AGG | - | chr2_4:8684922-8684941 | None:intergenic | 35.0% | |
| ACACTATATGATGAACATGG+TGG | - | chr2_4:8685247-8685266 | None:intergenic | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | + | chr2_4:8685588-8685607 | Msa0313340:CDS | 35.0% | |
| AAACAAGATGGCACAAAACT+GGG | + | chr2_4:8685635-8685654 | Msa0313340:CDS | 35.0% | |
| !!! | TTTTTCCAATGGTGTTGTGA+AGG | + | chr2_4:8685672-8685691 | Msa0313340:CDS | 35.0% |
| !!! | TTTTCCAATGGTGTTGTGAA+GGG | + | chr2_4:8685673-8685692 | Msa0313340:CDS | 35.0% |
| TACACCAACTATTGCAAAGA+AGG | + | chr2_4:8685718-8685737 | Msa0313340:CDS | 35.0% | |
| AAAACCAGAGAAGACTAACT+GGG | + | chr2_4:8685741-8685760 | Msa0313340:CDS | 35.0% | |
| CTTCTTCATTCATACCAAGA+TGG | - | chr2_4:8685780-8685799 | None:intergenic | 35.0% | |
| ATGGAATTACCATGTTGTCT+AGG | - | chr2_4:8685850-8685869 | None:intergenic | 35.0% | |
| ATTAAGAGCTACATTGTTGG+AGG | - | chr2_4:8685941-8685960 | None:intergenic | 35.0% | |
| CACATTAAGAGCTACATTGT+TGG | - | chr2_4:8685944-8685963 | None:intergenic | 35.0% | |
| CAACAATGTAGCTCTTAATG+TGG | + | chr2_4:8685942-8685961 | Msa0313340:CDS | 35.0% | |
| CATTTATGGGATTGGAATGA+AGG | + | chr2_4:8686199-8686218 | Msa0313340:three_prime_UTR | 35.0% | |
| GAATGAAGGAAGGAATAAGT+TGG | + | chr2_4:8686213-8686232 | Msa0313340:three_prime_UTR | 35.0% | |
| TCAATATTATGGCCGCATGA+GGG | - | chr2_4:8683678-8683697 | None:intergenic | 40.0% | |
| TTCAATATTATGGCCGCATG+AGG | - | chr2_4:8683679-8683698 | None:intergenic | 40.0% | |
| ! | TCTTATGTTGGTTGTTGTCG+AGG | - | chr2_4:8683798-8683817 | None:intergenic | 40.0% |
| ! | CCCAAATGATGTAGAAGTAC+TGG | + | chr2_4:8683977-8683996 | Msa0313340:CDS | 40.0% |
| !! | TGTAGAAGTACTGGAGCATT+TGG | + | chr2_4:8683986-8684005 | Msa0313340:CDS | 40.0% |
| !! | AAAGTTACACACTCTAGGAC+TGG | - | chr2_4:8684602-8684621 | None:intergenic | 40.0% |
| TCCTAGAGTGTGTAACTTTC+AGG | + | chr2_4:8684603-8684622 | Msa0313340:intron | 40.0% | |
| TGTAACACACTTCAACGAGT+TGG | - | chr2_4:8684645-8684664 | None:intergenic | 40.0% | |
| ATGACCACCAAACTCTCAAT+AGG | + | chr2_4:8684697-8684716 | Msa0313340:intron | 40.0% | |
| TGACCACCAAACTCTCAATA+GGG | + | chr2_4:8684698-8684717 | Msa0313340:intron | 40.0% | |
| !!! | ATAGGGGCATCCTATTTTGA+TGG | + | chr2_4:8684715-8684734 | Msa0313340:intron | 40.0% |
| !!! | TAGGGGCATCCTATTTTGAT+GGG | + | chr2_4:8684716-8684735 | Msa0313340:intron | 40.0% |
| GAAAAAGCCCCCATCAAAAT+AGG | - | chr2_4:8684728-8684747 | None:intergenic | 40.0% | |
| GGTACTTGCTTTCCAAAACT+TGG | - | chr2_4:8684901-8684920 | None:intergenic | 40.0% | |
| ATTGCAGGAGTTAGCAAAGA+TGG | + | chr2_4:8685520-8685539 | Msa0313340:intron | 40.0% | |
| TCGAAGGCCTATGAAAAAAG+TGG | - | chr2_4:8685555-8685574 | None:intergenic | 40.0% | |
| AAGCATACACAACAGGAACA+AGG | + | chr2_4:8685575-8685594 | Msa0313340:CDS | 40.0% | |
| AAGGTTCACACTGATGAAGA+AGG | + | chr2_4:8685607-8685626 | Msa0313340:CDS | 40.0% | |
| GAAACAAGATGGCACAAAAC+TGG | + | chr2_4:8685634-8685653 | Msa0313340:CDS | 40.0% | |
| AAATCCCTTCACAACACCAT+TGG | - | chr2_4:8685680-8685699 | None:intergenic | 40.0% | |
| GAAAACCAGAGAAGACTAAC+TGG | + | chr2_4:8685740-8685759 | Msa0313340:CDS | 40.0% | |
| GTGATGCATCAATACCATCT+TGG | + | chr2_4:8685763-8685782 | Msa0313340:CDS | 40.0% | |
| TGCTATGACCAACATGCATA+TGG | - | chr2_4:8685999-8686018 | None:intergenic | 40.0% | |
| ATATGCATGTTGGTCATAGC+AGG | + | chr2_4:8685998-8686017 | Msa0313340:CDS | 40.0% | |
| TATGCATGTTGGTCATAGCA+GGG | + | chr2_4:8685999-8686018 | Msa0313340:CDS | 40.0% | |
| TCACTTTGAACAGCCATGTT+TGG | - | chr2_4:8686048-8686067 | None:intergenic | 40.0% | |
| AACATGGCTGTTCAAAGTGA+TGG | + | chr2_4:8686048-8686067 | Msa0313340:CDS | 40.0% | |
| ! | TGCAAACAAAGTAAGAGTGC+TGG | + | chr2_4:8686098-8686117 | Msa0313340:CDS | 40.0% |
| TGCTGGAGAGAAAGTAACAT+TGG | + | chr2_4:8686115-8686134 | Msa0313340:exon | 40.0% | |
| TATGGGATTGGAATGAAGGA+AGG | + | chr2_4:8686203-8686222 | Msa0313340:three_prime_UTR | 40.0% | |
| TAGCACACACAGACAGAAGA+AGG | + | chr2_4:8683364-8683383 | Msa0313340:intron | 45.0% | |
| ! | AAGGAAAAGTGTGAGCACAC+AGG | + | chr2_4:8683383-8683402 | Msa0313340:five_prime_UTR | 45.0% |
| CAATATTATGGCCGCATGAG+GGG | - | chr2_4:8683677-8683696 | None:intergenic | 45.0% | |
| !! | AGAAGTACTGGAGCATTTGG+AGG | + | chr2_4:8683989-8684008 | Msa0313340:CDS | 45.0% |
| GAGTTCATACCAACGCTTCA+AGG | + | chr2_4:8684056-8684075 | Msa0313340:CDS | 45.0% | |
| AGACACGATCTTGTTCTGCA+CGG | + | chr2_4:8684227-8684246 | Msa0313340:intron | 45.0% | |
| GCCTGAAAGTTACACACTCT+AGG | - | chr2_4:8684607-8684626 | None:intergenic | 45.0% | |
| GACCACCAAACTCTCAATAG+GGG | + | chr2_4:8684699-8684718 | Msa0313340:intron | 45.0% | |
| !!! | AGGGGCATCCTATTTTGATG+GGG | + | chr2_4:8684717-8684736 | Msa0313340:intron | 45.0% |
| TGTCGGGATGTTTACACTCT+TGG | + | chr2_4:8684929-8684948 | Msa0313340:intron | 45.0% | |
| CCTGTTGTGTATGCTTTCGA+AGG | - | chr2_4:8685571-8685590 | None:intergenic | 45.0% | |
| ! | CCTTCGAAAGCATACACAAC+AGG | + | chr2_4:8685568-8685587 | Msa0313340:CDS | 45.0% |
| !! | ATCACCCAGTTAGTCTTCTC+TGG | - | chr2_4:8685748-8685767 | None:intergenic | 45.0% |
| ATCAACAAAGGAAGTGGCCA+TGG | + | chr2_4:8685901-8685920 | Msa0313340:CDS | 45.0% | |
| AGGCTGCACTGTTATTACCA+TGG | - | chr2_4:8685921-8685940 | None:intergenic | 45.0% | |
| ACCATTGAATGCCCCTCATG+CGG | + | chr2_4:8683663-8683682 | Msa0313340:CDS | 50.0% | |
| AGGTCTAACACAACCCTCTC+CGG | - | chr2_4:8683778-8683797 | None:intergenic | 50.0% | |
| GGGTGGGGTTAATGAATTGC+CGG | + | chr2_4:8683929-8683948 | Msa0313340:intron | 50.0% | |
| GGTGGGGTTAATGAATTGCC+GGG | + | chr2_4:8683930-8683949 | Msa0313340:CDS | 50.0% | |
| GTGGGGTTAATGAATTGCCG+GGG | + | chr2_4:8683931-8683950 | Msa0313340:CDS | 50.0% | |
| GGGTCAAATTTCACTCCAGC+TGG | - | chr2_4:8683960-8683979 | None:intergenic | 50.0% | |
| CCATTCTCTCCTTGAAGCGT+TGG | - | chr2_4:8684068-8684087 | None:intergenic | 50.0% | |
| CCAACGCTTCAAGGAGAGAA+TGG | + | chr2_4:8684065-8684084 | Msa0313340:CDS | 50.0% | |
| ACACACCCAGCACAATTACC+AGG | + | chr2_4:8684098-8684117 | Msa0313340:CDS | 50.0% | |
| TGCCCCTATTGAGAGTTTGG+TGG | - | chr2_4:8684704-8684723 | None:intergenic | 50.0% | |
| GGATGCCCCTATTGAGAGTT+TGG | - | chr2_4:8684707-8684726 | None:intergenic | 50.0% | |
| !!! | GGGGCATCCTATTTTGATGG+GGG | + | chr2_4:8684718-8684737 | Msa0313340:intron | 50.0% |
| CATGTTGTCTAGGCTGTGTC+TGG | - | chr2_4:8685840-8685859 | None:intergenic | 50.0% | |
| CAGACACAGCCTAGACAACA+TGG | + | chr2_4:8685838-8685857 | Msa0313340:CDS | 50.0% | |
| ATATCCTGCTAAGGCCGGAG+AGG | + | chr2_4:8683761-8683780 | Msa0313340:intron | 55.0% | |
| TATCCTGCTAAGGCCGGAGA+GGG | + | chr2_4:8683762-8683781 | Msa0313340:intron | 55.0% | |
| TTCACTCCAGCTGGTAACCC+CGG | - | chr2_4:8683951-8683970 | None:intergenic | 55.0% | |
| !! | GCCGCATGAGGGGCATTCAA+TGG | - | chr2_4:8683667-8683686 | None:intergenic | 60.0% |
| GAATTGCCGGGGTTACCAGC+TGG | + | chr2_4:8683942-8683961 | Msa0313340:CDS | 60.0% | |
| CAACCCTCTCCGGCCTTAGC+AGG | - | chr2_4:8683768-8683787 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 8683316 | 8686326 | 8683316 | ID=Msa0313340;Name=Msa0313340 |
| chr2_4 | mRNA | 8683316 | 8686326 | 8683316 | ID=Msa0313340-mRNA-1;Parent=Msa0313340;Name=Msa0313340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|0.5|0.4|5|195|308 |
| chr2_4 | exon | 8683316 | 8683362 | 8683316 | ID=Msa0313340-mRNA-1:exon:3271;Parent=Msa0313340-mRNA-1 |
| chr2_4 | exon | 8683383 | 8683404 | 8683383 | ID=Msa0313340-mRNA-1:exon:3272;Parent=Msa0313340-mRNA-1 |
| chr2_4 | exon | 8683549 | 8683710 | 8683549 | ID=Msa0313340-mRNA-1:exon:3273;Parent=Msa0313340-mRNA-1 |
| chr2_4 | exon | 8683930 | 8684119 | 8683930 | ID=Msa0313340-mRNA-1:exon:3274;Parent=Msa0313340-mRNA-1 |
| chr2_4 | exon | 8685527 | 8686326 | 8685527 | ID=Msa0313340-mRNA-1:exon:3275;Parent=Msa0313340-mRNA-1 |
| chr2_4 | five_prime_UTR | 8683316 | 8683362 | 8683316 | ID=Msa0313340-mRNA-1:five_prime_utr;Parent=Msa0313340-mRNA-1 |
| chr2_4 | five_prime_UTR | 8683383 | 8683404 | 8683383 | ID=Msa0313340-mRNA-1:five_prime_utr;Parent=Msa0313340-mRNA-1 |
| chr2_4 | five_prime_UTR | 8683549 | 8683578 | 8683549 | ID=Msa0313340-mRNA-1:five_prime_utr;Parent=Msa0313340-mRNA-1 |
| chr2_4 | CDS | 8683579 | 8683710 | 8683579 | ID=Msa0313340-mRNA-1:cds;Parent=Msa0313340-mRNA-1 |
| chr2_4 | CDS | 8683930 | 8684119 | 8683930 | ID=Msa0313340-mRNA-1:cds;Parent=Msa0313340-mRNA-1 |
| chr2_4 | CDS | 8685527 | 8686131 | 8685527 | ID=Msa0313340-mRNA-1:cds;Parent=Msa0313340-mRNA-1 |
| chr2_4 | three_prime_UTR | 8686132 | 8686326 | 8686132 | ID=Msa0313340-mRNA-1:three_prime_utr;Parent=Msa0313340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
