AlfalfaGEDB | Msa0314010

M. sativa cultivar zhongmu-4 / Msa0314010

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314010	XP_013462567.1	92.593	243	18	0	1	243	1	243	3.20e-165	466

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314010	sp\|Q9FJK3\|AGL80_ARATH	44.516	155	85	1	1	155	1	154	5.50e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0314010	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314010	MtrunA17_Chr2g0283941	92.593	243	18	0	1	243	1	243	2.94e-169	466
Msa0314010	MtrunA17_Chr3g0107381	46.927	179	92	2	1	177	1	178	1.12e-48	159
Msa0314010	MtrunA17_Chr3g0106421	41.379	203	110	3	29	227	1	198	4.95e-46	152
Msa0314010	MtrunA17_Chr3g0107461	43.590	156	88	0	5	160	5	160	5.89e-41	138
Msa0314010	MtrunA17_Chr8g0351751	45.000	160	86	1	1	158	1	160	1.17e-38	134
Msa0314010	MtrunA17_Chr5g0432691	37.342	158	98	1	1	158	1	157	5.77e-37	127
Msa0314010	MtrunA17_Chr3g0105791	43.972	141	79	0	29	169	1	141	1.45e-36	126
Msa0314010	MtrunA17_Chr4g0014321	37.000	200	112	2	1	200	1	186	3.81e-36	127
Msa0314010	MtrunA17_Chr4g0031421	43.885	139	78	0	29	167	1	139	5.28e-36	124
Msa0314010	MtrunA17_Chr3g0110131	47.097	155	81	1	1	155	1	154	8.42e-36	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0314010	AT5G48670.1	44.516	155	85	1	1	155	1	154	5.59e-32	119
Msa0314010	AT3G05860.3	36.723	177	107	2	1	175	1	174	6.16e-31	115
Msa0314010	AT3G05860.2	36.723	177	107	2	1	175	1	174	8.22e-31	113
Msa0314010	AT3G05860.1	36.723	177	107	2	1	175	1	174	9.98e-31	114
Msa0314010	AT1G65300.1	36.184	152	96	1	4	155	3	153	3.84e-29	111
Msa0314010	AT5G27960.1	36.129	155	94	2	4	156	2	153	2.42e-27	107
Msa0314010	AT5G26650.1	36.601	153	96	1	4	156	2	153	3.54e-27	107
Msa0314010	AT1G65330.1	35.099	151	97	1	5	155	4	153	5.37e-25	100
Msa0314010	AT2G28700.1	30.476	210	141	3	1	208	1	207	5.33e-23	95.9
Msa0314010	AT1G31640.1	33.775	151	94	3	5	153	4	150	8.46e-22	94.0

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Find 62 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCATGAAATGCTAACA+TGG	0.649787	2_4:-9522271	None:intergenic
AACATGGAGAAGTCCCAAGG+TGG	0.697499	2_4:-9522255	None:intergenic
AATAGGTAATGAGGGTAATA+AGG	0.250530	2_4:+9522116	Msa0314010:CDS
AATGAGATCAGCACTCTATG+TGG	0.635571	2_4:+9521691	Msa0314010:CDS
AATGGAGCAGAAGATATGAA+TGG	0.530854	2_4:+9522093	Msa0314010:CDS
ACAATCTGAAGAAAATTGAT+TGG	0.445024	2_4:+9522028	Msa0314010:CDS
ACAATGCTCAACCAGAGGTT+TGG	0.442796	2_4:+9521746	Msa0314010:CDS
ACATAGCCAATTCATCGAGC+AGG	0.541522	2_4:+9521299	Msa0314010:CDS
AGCATTTCATGATGTTAATA+CGG	0.402387	2_4:+9522278	Msa0314010:CDS
AGCCAATTCATCGAGCAGGA+AGG	0.659357	2_4:+9521303	Msa0314010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCAATCTCTTACTAGTG+AGG	-	chr2_4:9521491-9521510	None:intergenic	30.0%
AATCGAACGAAGCAAAAATA+TGG	+	chr2_4:9521822-9521841	Msa0314010:CDS	30.0%
ATTGAGATTTCGCTATACTT+TGG	-	chr2_4:9521870-9521889	None:intergenic	30.0%
ATCTGAAGAAAATTGATTGG+AGG	+	chr2_4:9522031-9522050	Msa0314010:CDS	30.0%
TATGAATGGAATAGGTAATG+AGG	+	chr2_4:9522107-9522126	Msa0314010:CDS	30.0%
ATGAATGGAATAGGTAATGA+GGG	+	chr2_4:9522108-9522127	Msa0314010:CDS	30.0%
AATAGGTAATGAGGGTAATA+AGG	+	chr2_4:9522116-9522135	Msa0314010:CDS	30.0%
ATAGGTAATGAGGGTAATAA+GGG	+	chr2_4:9522117-9522136	Msa0314010:CDS	30.0%
TTGGATAGCAACATGAATTA+TGG	+	chr2_4:9522210-9522229	Msa0314010:CDS	30.0%
AACATCATGAAATGCTAACA+TGG	-	chr2_4:9522274-9522293	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	9521271	9522326	9521271	ID=Msa0314010;Name=Msa0314010
chr2_4	mRNA	9521271	9522326	9521271	ID=Msa0314010-mRNA-1;Parent=Msa0314010;Name=Msa0314010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|243
chr2_4	exon	9521271	9521349	9521271	ID=Msa0314010-mRNA-1:exon:3663;Parent=Msa0314010-mRNA-1
chr2_4	exon	9521674	9522326	9521674	ID=Msa0314010-mRNA-1:exon:3664;Parent=Msa0314010-mRNA-1
chr2_4	CDS	9521271	9521349	9521271	ID=Msa0314010-mRNA-1:cds;Parent=Msa0314010-mRNA-1
chr2_4	CDS	9521674	9522326	9521674	ID=Msa0314010-mRNA-1:cds;Parent=Msa0314010-mRNA-1

Gene Sequence

>Msa0314010

ATGACTGGGAGGAAGGTTAAACTTGCATACATAGCCAATTCATCGAGCAGGAAGGCAAGCTACAAAAAAAGGAAAGCTGGTTTGCTAAAGAAGGTTAATGAGATCAGCACTCTATGTGGGATAGAAGCATGCGCAATAATATTTGGTGAAAACAATGCTCAACCAGAGGTTTGGCCACAAGGTCCTGCAACAAGAAATGTGTTATCCAAGTTCCTACACTTGCCTGAAATCGAACGAAGCAAAAATATGGTGGATTTGACAGCTTACTTAAACCAAAGTATAGCGAAATCTCAATTGTTGTTGAAGAAACAAATGGAGGCAAACAAGAAGAATGAATTCGTCCAATTTATTACTAAAGTATTTAGTACTGGACAATATCGTCCCGAGGATGTGAACGTGAATGAGCTGAATGACCTGATGGCCTTTATAGATAACAATCTGAAGAAAATTGATTGGAGGTTGCAATCGACGGAAATTCAATCTCAAGAGGAAGCTGGAAATGGAGCAGAAGATATGAATGGAATAGGTAATGAGGGTAATAAGGGTGATGCATCAGGGCTGGTGAATGTAGGAGATATGCAAGCTAATATGGGACATGGTGCTGAGGTTCAAGGTTTGGATAGCAACATGAATTATGGCATGGAAAGTGATTATCAAGATCCACCTTGGGACTTCTCCATGTTAGCATTTCATGATGTTAATACGGACATAAATGGTCTTTGGTCTAACTAG

Protein sequence

>Msa0314010

MTGRKVKLAYIANSSSRKASYKKRKAGLLKKVNEISTLCGIEACAIIFGENNAQPEVWPQGPATRNVLSKFLHLPEIERSKNMVDLTAYLNQSIAKSQLLLKKQMEANKKNEFVQFITKVFSTGQYRPEDVNVNELNDLMAFIDNNLKKIDWRLQSTEIQSQEEAGNGAEDMNGIGNEGNKGDASGLVNVGDMQANMGHGAEVQGLDSNMNYGMESDYQDPPWDFSMLAFHDVNTDINGLWSN*