Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314010 | XP_013462567.1 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 3.20e-165 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314010 | sp|Q9FJK3|AGL80_ARATH | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 5.50e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0314010 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314010 | MtrunA17_Chr2g0283941 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 2.94e-169 | 466 |
| Msa0314010 | MtrunA17_Chr3g0107381 | 46.927 | 179 | 92 | 2 | 1 | 177 | 1 | 178 | 1.12e-48 | 159 |
| Msa0314010 | MtrunA17_Chr3g0106421 | 41.379 | 203 | 110 | 3 | 29 | 227 | 1 | 198 | 4.95e-46 | 152 |
| Msa0314010 | MtrunA17_Chr3g0107461 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 5.89e-41 | 138 |
| Msa0314010 | MtrunA17_Chr8g0351751 | 45.000 | 160 | 86 | 1 | 1 | 158 | 1 | 160 | 1.17e-38 | 134 |
| Msa0314010 | MtrunA17_Chr5g0432691 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 5.77e-37 | 127 |
| Msa0314010 | MtrunA17_Chr3g0105791 | 43.972 | 141 | 79 | 0 | 29 | 169 | 1 | 141 | 1.45e-36 | 126 |
| Msa0314010 | MtrunA17_Chr4g0014321 | 37.000 | 200 | 112 | 2 | 1 | 200 | 1 | 186 | 3.81e-36 | 127 |
| Msa0314010 | MtrunA17_Chr4g0031421 | 43.885 | 139 | 78 | 0 | 29 | 167 | 1 | 139 | 5.28e-36 | 124 |
| Msa0314010 | MtrunA17_Chr3g0110131 | 47.097 | 155 | 81 | 1 | 1 | 155 | 1 | 154 | 8.42e-36 | 127 |
| Msa0314010 | MtrunA17_Chr4g0014031 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 3.25e-34 | 122 |
| Msa0314010 | MtrunA17_Chr4g0013041 | 36.364 | 187 | 107 | 4 | 1 | 183 | 1 | 179 | 1.13e-32 | 118 |
| Msa0314010 | MtrunA17_Chr4g0014131 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 2.10e-29 | 110 |
| Msa0314010 | MtrunA17_Chr2g0296861 | 41.250 | 160 | 89 | 2 | 1 | 158 | 1 | 157 | 2.68e-29 | 107 |
| Msa0314010 | MtrunA17_Chr3g0106501 | 42.222 | 135 | 78 | 0 | 29 | 163 | 1 | 135 | 5.38e-29 | 107 |
| Msa0314010 | MtrunA17_Chr1g0197261 | 39.490 | 157 | 91 | 3 | 1 | 156 | 1 | 154 | 2.03e-28 | 105 |
| Msa0314010 | MtrunA17_Chr1g0188681 | 39.735 | 151 | 89 | 2 | 1 | 151 | 1 | 149 | 2.51e-28 | 105 |
| Msa0314010 | MtrunA17_Chr3g0107331 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 3.08e-28 | 105 |
| Msa0314010 | MtrunA17_Chr4g0014121 | 40.252 | 159 | 95 | 0 | 1 | 159 | 29 | 187 | 3.16e-28 | 105 |
| Msa0314010 | MtrunA17_Chr5g0420351 | 37.748 | 151 | 92 | 2 | 1 | 151 | 1 | 149 | 1.79e-27 | 103 |
| Msa0314010 | MtrunA17_Chr2g0296831 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.15e-25 | 97.4 |
| Msa0314010 | MtrunA17_Chr3g0107351 | 37.671 | 146 | 90 | 1 | 5 | 150 | 4 | 148 | 1.30e-25 | 98.6 |
| Msa0314010 | MtrunA17_Chr1g0197461 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 2.81e-25 | 97.4 |
| Msa0314010 | MtrunA17_Chr3g0107361 | 37.333 | 150 | 93 | 1 | 5 | 154 | 4 | 152 | 6.19e-25 | 96.7 |
| Msa0314010 | MtrunA17_Chr1g0188661 | 39.375 | 160 | 93 | 3 | 1 | 159 | 1 | 157 | 2.91e-24 | 94.7 |
| Msa0314010 | MtrunA17_Chr1g0197321 | 34.615 | 156 | 101 | 1 | 1 | 156 | 1 | 155 | 1.71e-23 | 92.8 |
| Msa0314010 | MtrunA17_Chr7g0218151 | 38.994 | 159 | 95 | 2 | 1 | 159 | 1 | 157 | 4.61e-23 | 91.7 |
| Msa0314010 | MtrunA17_Chr3g0107341 | 34.667 | 150 | 97 | 1 | 5 | 154 | 4 | 152 | 6.11e-23 | 91.7 |
| Msa0314010 | MtrunA17_Chr4g0012761 | 37.736 | 159 | 97 | 2 | 1 | 159 | 1 | 157 | 9.03e-22 | 88.2 |
| Msa0314010 | MtrunA17_Chr3g0128721 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 8.04e-21 | 90.9 |
| Msa0314010 | MtrunA17_Chr1g0193311 | 35.897 | 156 | 98 | 2 | 1 | 156 | 1 | 154 | 1.39e-20 | 85.1 |
| Msa0314010 | MtrunA17_Chr1g0188651 | 37.662 | 154 | 92 | 3 | 1 | 154 | 1 | 150 | 1.32e-19 | 82.4 |
| Msa0314010 | MtrunA17_Chr4g0008701 | 31.973 | 147 | 96 | 2 | 4 | 150 | 7 | 149 | 2.61e-18 | 83.6 |
| Msa0314010 | MtrunA17_Chr7g0267601 | 30.612 | 147 | 98 | 2 | 4 | 150 | 7 | 149 | 8.29e-18 | 82.0 |
| Msa0314010 | MtrunA17_Chr4g0022641 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 8.84e-14 | 70.1 |
| Msa0314010 | MtrunA17_Chr1g0212151 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 3.51e-13 | 68.2 |
| Msa0314010 | MtrunA17_Chr4g0059631 | 22.477 | 218 | 147 | 5 | 3 | 208 | 2 | 209 | 2.74e-12 | 64.7 |
| Msa0314010 | MtrunA17_Chr6g0457851 | 31.481 | 108 | 66 | 4 | 3 | 103 | 12 | 118 | 7.83e-12 | 64.3 |
| Msa0314010 | MtrunA17_Chr1g0212471 | 29.114 | 158 | 97 | 6 | 3 | 154 | 2 | 150 | 8.97e-12 | 62.4 |
| Msa0314010 | MtrunA17_Chr6g0449851 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 4.95e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314010 | AT5G48670.1 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 5.59e-32 | 119 |
| Msa0314010 | AT3G05860.3 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 6.16e-31 | 115 |
| Msa0314010 | AT3G05860.2 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 8.22e-31 | 113 |
| Msa0314010 | AT3G05860.1 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 9.98e-31 | 114 |
| Msa0314010 | AT1G65300.1 | 36.184 | 152 | 96 | 1 | 4 | 155 | 3 | 153 | 3.84e-29 | 111 |
| Msa0314010 | AT5G27960.1 | 36.129 | 155 | 94 | 2 | 4 | 156 | 2 | 153 | 2.42e-27 | 107 |
| Msa0314010 | AT5G26650.1 | 36.601 | 153 | 96 | 1 | 4 | 156 | 2 | 153 | 3.54e-27 | 107 |
| Msa0314010 | AT1G65330.1 | 35.099 | 151 | 97 | 1 | 5 | 155 | 4 | 153 | 5.37e-25 | 100 |
| Msa0314010 | AT2G28700.1 | 30.476 | 210 | 141 | 3 | 1 | 208 | 1 | 207 | 5.33e-23 | 95.9 |
| Msa0314010 | AT1G31640.1 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 8.46e-22 | 94.0 |
| Msa0314010 | AT1G31630.1 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 9.82e-22 | 92.4 |
| Msa0314010 | AT1G22590.2 | 30.380 | 158 | 106 | 1 | 1 | 158 | 1 | 154 | 4.09e-20 | 84.3 |
| Msa0314010 | AT5G27810.1 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.44e-19 | 81.6 |
| Msa0314010 | AT2G40210.1 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 3.25e-18 | 83.2 |
| Msa0314010 | AT5G26580.1 | 31.210 | 157 | 89 | 3 | 1 | 155 | 1 | 140 | 2.28e-17 | 80.5 |
| Msa0314010 | AT5G06500.1 | 29.630 | 162 | 110 | 2 | 1 | 161 | 1 | 159 | 4.19e-17 | 78.2 |
| Msa0314010 | AT5G26630.1 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 2.49e-15 | 72.8 |
| Msa0314010 | AT5G55690.1 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.60e-15 | 73.2 |
| Msa0314010 | AT5G55690.2 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.60e-15 | 73.2 |
| Msa0314010 | AT5G58890.1 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 9.46e-14 | 69.7 |
Find 62 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATACTTTAGTAATAAAT+TGG | 0.225188 | 2_4:-9521936 | None:intergenic |
| AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2_4:+9522116 | Msa0314010:CDS |
| AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2_4:+9522164 | Msa0314010:CDS |
| CTTCAGATTGTTATCTATAA+AGG | 0.253823 | 2_4:-9522016 | None:intergenic |
| TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2_4:+9522210 | Msa0314010:CDS |
| TTGATTATCGTTGTCATGAC+TGG | 0.313338 | 2_4:+9521256 | None:intergenic |
| GAAGCATGCGCAATAATATT+TGG | 0.313391 | 2_4:+9521718 | Msa0314010:CDS |
| GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2_4:-9521778 | None:intergenic |
| GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2_4:+9522129 | Msa0314010:CDS |
| TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2_4:-9521305 | None:intergenic |
| ATACGGACATAAATGGTCTT+TGG | 0.354339 | 2_4:+9522295 | Msa0314010:CDS |
| TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2_4:+9521666 | Msa0314010:intron |
| GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2_4:+9522099 | Msa0314010:CDS |
| AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2_4:+9522278 | Msa0314010:CDS |
| ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2_4:+9521888 | Msa0314010:CDS |
| ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2_4:-9521867 | None:intergenic |
| GATGTTAATACGGACATAAA+TGG | 0.434993 | 2_4:+9522288 | Msa0314010:CDS |
| GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2_4:-9521757 | None:intergenic |
| TGGTGCTGAGGTTCAAGGTT+TGG | 0.437569 | 2_4:+9522191 | Msa0314010:CDS |
| TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2_4:+9522075 | Msa0314010:CDS |
| ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2_4:+9521746 | Msa0314010:CDS |
| ACAATCTGAAGAAAATTGAT+TGG | 0.445024 | 2_4:+9522028 | Msa0314010:CDS |
| TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2_4:-9521800 | None:intergenic |
| CTCATTCACGTTCACATCCT+CGG | 0.451043 | 2_4:-9521977 | None:intergenic |
| ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2_4:+9522117 | Msa0314010:CDS |
| GGACATGGTGCTGAGGTTCA+AGG | 0.490486 | 2_4:+9522186 | Msa0314010:CDS |
| ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2_4:+9521943 | Msa0314010:CDS |
| TGTTATCTATAAAGGCCATC+AGG | 0.507830 | 2_4:-9522008 | None:intergenic |
| TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2_4:+9522107 | Msa0314010:CDS |
| CGTTGTCATGACTGGGAGGA+AGG | 0.514319 | 2_4:+9521264 | None:intergenic |
| ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2_4:+9522069 | Msa0314010:CDS |
| TGATTATCGTTGTCATGACT+GGG | 0.518769 | 2_4:+9521257 | None:intergenic |
| CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2_4:+9521754 | Msa0314010:CDS |
| ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2_4:+9522108 | Msa0314010:CDS |
| AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2_4:+9522093 | Msa0314010:CDS |
| TCATTCACGTTCACATCCTC+GGG | 0.531270 | 2_4:-9521976 | None:intergenic |
| ATCTGAAGAAAATTGATTGG+AGG | 0.531271 | 2_4:+9522031 | Msa0314010:CDS |
| GGAGATATGCAAGCTAATAT+GGG | 0.532480 | 2_4:+9522165 | Msa0314010:CDS |
| GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2_4:-9521807 | None:intergenic |
| TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2_4:-9521769 | None:intergenic |
| ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2_4:+9521299 | Msa0314010:CDS |
| TGATTGGAGGTTGCAATCGA+CGG | 0.558130 | 2_4:+9522044 | Msa0314010:CDS |
| TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2_4:+9522134 | Msa0314010:CDS |
| TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2_4:+9522242 | Msa0314010:CDS |
| GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2_4:+9522241 | Msa0314010:CDS |
| TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2_4:+9522215 | Msa0314010:CDS |
| GACGGAAATTCAATCTCAAG+AGG | 0.615492 | 2_4:+9522062 | Msa0314010:CDS |
| GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2_4:+9522144 | Msa0314010:CDS |
| ATGAGATCAGCACTCTATGT+GGG | 0.619663 | 2_4:+9521692 | Msa0314010:CDS |
| AATGAGATCAGCACTCTATG+TGG | 0.635571 | 2_4:+9521691 | Msa0314010:CDS |
| TAATATGGGACATGGTGCTG+AGG | 0.638411 | 2_4:+9522179 | Msa0314010:CDS |
| GAATGAGCTGAATGACCTGA+TGG | 0.641130 | 2_4:+9521993 | Msa0314010:CDS |
| ATGCAAGCTAATATGGGACA+TGG | 0.644357 | 2_4:+9522171 | Msa0314010:CDS |
| AACATCATGAAATGCTAACA+TGG | 0.649787 | 2_4:-9522271 | None:intergenic |
| GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2_4:+9522130 | Msa0314010:CDS |
| GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2_4:+9521891 | Msa0314010:CDS |
| AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2_4:+9521303 | Msa0314010:CDS |
| GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2_4:-9522258 | None:intergenic |
| TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2_4:+9521960 | Msa0314010:CDS |
| TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2_4:+9521741 | Msa0314010:CDS |
| AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2_4:-9522255 | None:intergenic |
| TTATCGTTGTCATGACTGGG+AGG | 0.712263 | 2_4:+9521260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_4:9521576-9521595 | Msa0314010:intron | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_4:9521939-9521958 | None:intergenic | 10.0% |
| !!! | TTCACTTTATTTTATTTTTT+TGG | + | chr2_4:9521576-9521595 | Msa0314010:intron | 10.0% |
| !! | TAAATACTTTAGTAATAAAT+TGG | - | chr2_4:9521939-9521958 | None:intergenic | 10.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_4:9521397-9521416 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_4:9521415-9521434 | Msa0314010:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_4:9521420-9521439 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_4:9521432-9521451 | Msa0314010:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_4:9521503-9521522 | Msa0314010:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_4:9521504-9521523 | Msa0314010:intron | 20.0% |
| !! | CTATTGAAAAACATATATAG+TGG | - | chr2_4:9521654-9521673 | None:intergenic | 20.0% |
| !!! | CACTATATATGTTTTTCAAT+AGG | + | chr2_4:9521652-9521671 | Msa0314010:intron | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_4:9521943-9521962 | Msa0314010:CDS | 20.0% |
| !!! | TAACATCTATATAATTTGCA+TGG | - | chr2_4:9521397-9521416 | None:intergenic | 20.0% |
| !! | TACCATTAGATAATGATTAA+TGG | + | chr2_4:9521415-9521434 | Msa0314010:intron | 20.0% |
| !! | TACCATTAATCATTATCTAA+TGG | - | chr2_4:9521420-9521439 | None:intergenic | 20.0% |
| !! | TAATGGTATGAAAATGATTT+AGG | + | chr2_4:9521432-9521451 | Msa0314010:intron | 20.0% |
| !! | ATTGAATTTAAACAAACTCA+AGG | + | chr2_4:9521503-9521522 | Msa0314010:intron | 20.0% |
| !! | TTGAATTTAAACAAACTCAA+GGG | + | chr2_4:9521504-9521523 | Msa0314010:intron | 20.0% |
| !! | CTATTGAAAAACATATATAG+TGG | - | chr2_4:9521654-9521673 | None:intergenic | 20.0% |
| !!! | CACTATATATGTTTTTCAAT+AGG | + | chr2_4:9521652-9521671 | Msa0314010:intron | 20.0% |
| !!! | ATTACTAAAGTATTTAGTAC+TGG | + | chr2_4:9521943-9521962 | Msa0314010:CDS | 20.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_4:9521888-9521907 | Msa0314010:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_4:9522019-9522038 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_4:9522028-9522047 | Msa0314010:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_4:9522278-9522297 | Msa0314010:CDS | 25.0% |
| !! | ATTGTTGTTGAAGAAACAAA+TGG | + | chr2_4:9521888-9521907 | Msa0314010:CDS | 25.0% |
| ! | CTTCAGATTGTTATCTATAA+AGG | - | chr2_4:9522019-9522038 | None:intergenic | 25.0% |
| ! | ACAATCTGAAGAAAATTGAT+TGG | + | chr2_4:9522028-9522047 | Msa0314010:CDS | 25.0% |
| ! | AGCATTTCATGATGTTAATA+CGG | + | chr2_4:9522278-9522297 | Msa0314010:CDS | 25.0% |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_4:9521491-9521510 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_4:9521666-9521685 | Msa0314010:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_4:9521822-9521841 | Msa0314010:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_4:9521870-9521889 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_4:9522031-9522050 | Msa0314010:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_4:9522107-9522126 | Msa0314010:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_4:9522108-9522127 | Msa0314010:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_4:9522116-9522135 | Msa0314010:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_4:9522117-9522136 | Msa0314010:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_4:9522210-9522229 | Msa0314010:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_4:9522274-9522293 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATAAA+TGG | + | chr2_4:9522288-9522307 | Msa0314010:CDS | 30.0% | |
| AATTCAATCTCTTACTAGTG+AGG | - | chr2_4:9521491-9521510 | None:intergenic | 30.0% | |
| !! | TTCAATAGGTTTGCTAAAGA+AGG | + | chr2_4:9521666-9521685 | Msa0314010:intron | 30.0% |
| AATCGAACGAAGCAAAAATA+TGG | + | chr2_4:9521822-9521841 | Msa0314010:CDS | 30.0% | |
| ATTGAGATTTCGCTATACTT+TGG | - | chr2_4:9521870-9521889 | None:intergenic | 30.0% | |
| ATCTGAAGAAAATTGATTGG+AGG | + | chr2_4:9522031-9522050 | Msa0314010:CDS | 30.0% | |
| TATGAATGGAATAGGTAATG+AGG | + | chr2_4:9522107-9522126 | Msa0314010:CDS | 30.0% | |
| ATGAATGGAATAGGTAATGA+GGG | + | chr2_4:9522108-9522127 | Msa0314010:CDS | 30.0% | |
| AATAGGTAATGAGGGTAATA+AGG | + | chr2_4:9522116-9522135 | Msa0314010:CDS | 30.0% | |
| ATAGGTAATGAGGGTAATAA+GGG | + | chr2_4:9522117-9522136 | Msa0314010:CDS | 30.0% | |
| TTGGATAGCAACATGAATTA+TGG | + | chr2_4:9522210-9522229 | Msa0314010:CDS | 30.0% | |
| AACATCATGAAATGCTAACA+TGG | - | chr2_4:9522274-9522293 | None:intergenic | 30.0% | |
| GATGTTAATACGGACATAAA+TGG | + | chr2_4:9522288-9522307 | Msa0314010:CDS | 30.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_4:9521328-9521347 | Msa0314010:CDS | 35.0% | |
| GAAGCATGCGCAATAATATT+TGG | + | chr2_4:9521718-9521737 | Msa0314010:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_4:9521781-9521800 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_4:9521820-9521839 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_4:9521891-9521910 | Msa0314010:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_4:9522011-9522030 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_4:9522093-9522112 | Msa0314010:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_4:9522099-9522118 | Msa0314010:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_4:9522164-9522183 | Msa0314010:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_4:9522165-9522184 | Msa0314010:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_4:9522215-9522234 | Msa0314010:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_4:9522242-9522261 | Msa0314010:CDS | 35.0% | |
| ATACGGACATAAATGGTCTT+TGG | + | chr2_4:9522295-9522314 | Msa0314010:CDS | 35.0% | |
| AGCTACAAAAAAAGGAAAGC+TGG | + | chr2_4:9521328-9521347 | Msa0314010:CDS | 35.0% | |
| GAAGCATGCGCAATAATATT+TGG | + | chr2_4:9521718-9521737 | Msa0314010:CDS | 35.0% | |
| GATAACACATTTCTTGTTGC+AGG | - | chr2_4:9521781-9521800 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTCGATTTC+AGG | - | chr2_4:9521820-9521839 | None:intergenic | 35.0% |
| GTTGTTGAAGAAACAAATGG+AGG | + | chr2_4:9521891-9521910 | Msa0314010:CDS | 35.0% | |
| TGTTATCTATAAAGGCCATC+AGG | - | chr2_4:9522011-9522030 | None:intergenic | 35.0% | |
| AATGGAGCAGAAGATATGAA+TGG | + | chr2_4:9522093-9522112 | Msa0314010:CDS | 35.0% | |
| GCAGAAGATATGAATGGAAT+AGG | + | chr2_4:9522099-9522118 | Msa0314010:CDS | 35.0% | |
| AGGAGATATGCAAGCTAATA+TGG | + | chr2_4:9522164-9522183 | Msa0314010:CDS | 35.0% | |
| GGAGATATGCAAGCTAATAT+GGG | + | chr2_4:9522165-9522184 | Msa0314010:CDS | 35.0% | |
| TAGCAACATGAATTATGGCA+TGG | + | chr2_4:9522215-9522234 | Msa0314010:CDS | 35.0% | |
| TGATTATCAAGATCCACCTT+GGG | + | chr2_4:9522242-9522261 | Msa0314010:CDS | 35.0% | |
| ATACGGACATAAATGGTCTT+TGG | + | chr2_4:9522295-9522314 | Msa0314010:CDS | 35.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_4:9521320-9521339 | Msa0314010:CDS | 40.0% | |
| AATGAGATCAGCACTCTATG+TGG | + | chr2_4:9521691-9521710 | Msa0314010:CDS | 40.0% | |
| ATGAGATCAGCACTCTATGT+GGG | + | chr2_4:9521692-9521711 | Msa0314010:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_4:9521741-9521760 | Msa0314010:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_4:9521825-9521844 | Msa0314010:CDS | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_4:9522062-9522081 | Msa0314010:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_4:9522069-9522088 | Msa0314010:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_4:9522130-9522149 | Msa0314010:CDS | 40.0% | |
| ATGCAAGCTAATATGGGACA+TGG | + | chr2_4:9522171-9522190 | Msa0314010:CDS | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_4:9522241-9522260 | Msa0314010:CDS | 40.0% | |
| GGAAGGCAAGCTACAAAAAA+AGG | + | chr2_4:9521320-9521339 | Msa0314010:CDS | 40.0% | |
| AATGAGATCAGCACTCTATG+TGG | + | chr2_4:9521691-9521710 | Msa0314010:CDS | 40.0% | |
| ATGAGATCAGCACTCTATGT+GGG | + | chr2_4:9521692-9521711 | Msa0314010:CDS | 40.0% | |
| TGAAAACAATGCTCAACCAG+AGG | + | chr2_4:9521741-9521760 | Msa0314010:CDS | 40.0% | |
| CGAACGAAGCAAAAATATGG+TGG | + | chr2_4:9521825-9521844 | Msa0314010:CDS | 40.0% | |
| GACGGAAATTCAATCTCAAG+AGG | + | chr2_4:9522062-9522081 | Msa0314010:CDS | 40.0% | |
| ATTCAATCTCAAGAGGAAGC+TGG | + | chr2_4:9522069-9522088 | Msa0314010:CDS | 40.0% | |
| GTAATAAGGGTGATGCATCA+GGG | + | chr2_4:9522130-9522149 | Msa0314010:CDS | 40.0% | |
| ATGCAAGCTAATATGGGACA+TGG | + | chr2_4:9522171-9522190 | Msa0314010:CDS | 40.0% | |
| GTGATTATCAAGATCCACCT+TGG | + | chr2_4:9522241-9522260 | Msa0314010:CDS | 40.0% | |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_4:9521299-9521318 | Msa0314010:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_4:9521746-9521765 | Msa0314010:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_4:9521772-9521791 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_4:9521803-9521822 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_4:9521810-9521829 | None:intergenic | 45.0% | |
| TCATTCACGTTCACATCCTC+GGG | - | chr2_4:9521979-9521998 | None:intergenic | 45.0% | |
| CTCATTCACGTTCACATCCT+CGG | - | chr2_4:9521980-9521999 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_4:9521993-9522012 | Msa0314010:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_4:9522044-9522063 | Msa0314010:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_4:9522075-9522094 | Msa0314010:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_4:9522129-9522148 | Msa0314010:CDS | 45.0% | |
| ! | TAATATGGGACATGGTGCTG+AGG | + | chr2_4:9522179-9522198 | Msa0314010:CDS | 45.0% |
| ACATAGCCAATTCATCGAGC+AGG | + | chr2_4:9521299-9521318 | Msa0314010:CDS | 45.0% | |
| ACAATGCTCAACCAGAGGTT+TGG | + | chr2_4:9521746-9521765 | Msa0314010:CDS | 45.0% | |
| TTTCTTGTTGCAGGACCTTG+TGG | - | chr2_4:9521772-9521791 | None:intergenic | 45.0% | |
| TTCAGGCAAGTGTAGGAACT+TGG | - | chr2_4:9521803-9521822 | None:intergenic | 45.0% | |
| GTTCGATTTCAGGCAAGTGT+AGG | - | chr2_4:9521810-9521829 | None:intergenic | 45.0% | |
| TCATTCACGTTCACATCCTC+GGG | - | chr2_4:9521979-9521998 | None:intergenic | 45.0% | |
| CTCATTCACGTTCACATCCT+CGG | - | chr2_4:9521980-9521999 | None:intergenic | 45.0% | |
| GAATGAGCTGAATGACCTGA+TGG | + | chr2_4:9521993-9522012 | Msa0314010:CDS | 45.0% | |
| TGATTGGAGGTTGCAATCGA+CGG | + | chr2_4:9522044-9522063 | Msa0314010:CDS | 45.0% | |
| TCTCAAGAGGAAGCTGGAAA+TGG | + | chr2_4:9522075-9522094 | Msa0314010:CDS | 45.0% | |
| GGTAATAAGGGTGATGCATC+AGG | + | chr2_4:9522129-9522148 | Msa0314010:CDS | 45.0% | |
| ! | TAATATGGGACATGGTGCTG+AGG | + | chr2_4:9522179-9522198 | Msa0314010:CDS | 45.0% |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_4:9521303-9521322 | Msa0314010:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_4:9521308-9521327 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_4:9521960-9521979 | Msa0314010:CDS | 50.0% | |
| ! | TGGTGCTGAGGTTCAAGGTT+TGG | + | chr2_4:9522191-9522210 | Msa0314010:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_4:9522258-9522277 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_4:9522261-9522280 | None:intergenic | 50.0% | |
| AGCCAATTCATCGAGCAGGA+AGG | + | chr2_4:9521303-9521322 | Msa0314010:CDS | 50.0% | |
| TGCCTTCCTGCTCGATGAAT+TGG | - | chr2_4:9521308-9521327 | None:intergenic | 50.0% | |
| TACTGGACAATATCGTCCCG+AGG | + | chr2_4:9521960-9521979 | Msa0314010:CDS | 50.0% | |
| ! | TGGTGCTGAGGTTCAAGGTT+TGG | + | chr2_4:9522191-9522210 | Msa0314010:CDS | 50.0% |
| AACATGGAGAAGTCCCAAGG+TGG | - | chr2_4:9522258-9522277 | None:intergenic | 50.0% | |
| GCTAACATGGAGAAGTCCCA+AGG | - | chr2_4:9522261-9522280 | None:intergenic | 50.0% | |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_4:9521754-9521773 | Msa0314010:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_4:9522134-9522153 | Msa0314010:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_4:9522144-9522163 | Msa0314010:CDS | 55.0% |
| ! | GGACATGGTGCTGAGGTTCA+AGG | + | chr2_4:9522186-9522205 | Msa0314010:CDS | 55.0% |
| CAACCAGAGGTTTGGCCACA+AGG | + | chr2_4:9521754-9521773 | Msa0314010:CDS | 55.0% | |
| TAAGGGTGATGCATCAGGGC+TGG | + | chr2_4:9522134-9522153 | Msa0314010:CDS | 55.0% | |
| ! | GCATCAGGGCTGGTGAATGT+AGG | + | chr2_4:9522144-9522163 | Msa0314010:CDS | 55.0% |
| ! | GGACATGGTGCTGAGGTTCA+AGG | + | chr2_4:9522186-9522205 | Msa0314010:CDS | 55.0% |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_4:9521760-9521779 | None:intergenic | 60.0% | |
| GGACCTTGTGGCCAAACCTC+TGG | - | chr2_4:9521760-9521779 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9521271 | 9522326 | 9521271 | ID=Msa0314010;Name=Msa0314010 |
| chr2_4 | mRNA | 9521271 | 9522326 | 9521271 | ID=Msa0314010-mRNA-1;Parent=Msa0314010;Name=Msa0314010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|243 |
| chr2_4 | exon | 9521271 | 9521349 | 9521271 | ID=Msa0314010-mRNA-1:exon:3663;Parent=Msa0314010-mRNA-1 |
| chr2_4 | exon | 9521674 | 9522326 | 9521674 | ID=Msa0314010-mRNA-1:exon:3664;Parent=Msa0314010-mRNA-1 |
| chr2_4 | CDS | 9521271 | 9521349 | 9521271 | ID=Msa0314010-mRNA-1:cds;Parent=Msa0314010-mRNA-1 |
| chr2_4 | CDS | 9521674 | 9522326 | 9521674 | ID=Msa0314010-mRNA-1:cds;Parent=Msa0314010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
