AlfalfaGEDB | Msa0315110

M. sativa cultivar zhongmu-4 / Msa0315110

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315110	XP_003593218.2	95.854	796	31	1	7	800	11	806	0.0	1442

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315110	sp\|Q9LME6\|MBD8_ARATH	45.752	153	61	3	133	263	238	390	4.75e-33	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0315110	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315110	MtrunA17_Chr2g0279291	95.854	796	31	1	7	800	11	806	0.0	1442
Msa0315110	MtrunA17_Chr3g0115871	38.060	268	117	10	47	271	56	317	2.07e-29	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315110	AT1G22310.1	45.752	153	61	3	133	263	139	291	1.09e-34	138
Msa0315110	AT1G22310.2	45.752	153	61	3	133	263	238	390	4.83e-34	137

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Find 230 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTATGACAGAAC+TGG	0.462546	2_4:-11296344	None:intergenic
AAAATGGAAAAGAGCTTGAC+TGG	0.520687	2_4:+11296660	Msa0315110:CDS
AAACGGTGTTGTGATTGATT+TGG	0.447212	2_4:+11294700	Msa0315110:CDS
AAACTTCGATATATCTATGC+AGG	0.536888	2_4:-11298747	None:intergenic
AAAGAATCCAAAGATTGTTC+TGG	0.310627	2_4:-11297176	None:intergenic
AAAGGAAAGATGGTCGTGCT+TGG	0.491157	2_4:+11294924	Msa0315110:CDS
AACATAGAAGAAGATGAAGA+AGG	0.517254	2_4:+11294229	Msa0315110:exon
AACGATTACCAGTCTAAAGA+TGG	0.519030	2_4:-11298229	None:intergenic
AACTGGACACATGAATCCAA+CGG	0.616659	2_4:-11298147	None:intergenic
AAGAATCCAAAGATTGTTCT+GGG	0.453262	2_4:-11297175	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCCAAAAGTTGTCAAAAAA+TGG	-	chr2_4:11293886-11293905	None:intergenic	30.0%
AAAACAATGGAGAGAGAAAA+AGG	-	chr2_4:11293953-11293972	None:intergenic	30.0%
TCAACAAAGTTGTCATCAAA+TGG	+	chr2_4:11294003-11294022	Msa0315110:intron	30.0%
GTTTGACACTATTTGAAAGA+AGG	+	chr2_4:11294076-11294095	Msa0315110:five_prime_UTR	30.0%
AATTTCAACTTCACTGTTTG+CGG	+	chr2_4:11294195-11294214	Msa0315110:five_prime_UTR	30.0%
AACATAGAAGAAGATGAAGA+AGG	+	chr2_4:11294229-11294248	Msa0315110:exon	30.0%
GAAGAGATTGTGAACAAAAA+CGG	+	chr2_4:11294683-11294702	Msa0315110:CDS	30.0%
TTTATTGCCGCAGATATATA+AGG	+	chr2_4:11294948-11294967	Msa0315110:CDS	30.0%
TCCAAAACCTTATATATCTG+CGG	-	chr2_4:11294958-11294977	None:intergenic	30.0%
AAGCTATCATGAAGAGTTTA+TGG	+	chr2_4:11295188-11295207	Msa0315110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	11293826	11299054	11293826	ID=Msa0315110;Name=Msa0315110
chr2_4	mRNA	11293826	11299054	11293826	ID=Msa0315110-mRNA-1;Parent=Msa0315110;Name=Msa0315110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=224\|1\|1\|1\|0.5\|0.4\|5\|401\|800
chr2_4	exon	11293826	11293858	11293826	ID=Msa0315110-mRNA-1:exon:4353;Parent=Msa0315110-mRNA-1
chr2_4	exon	11294051	11294969	11294051	ID=Msa0315110-mRNA-1:exon:4354;Parent=Msa0315110-mRNA-1
chr2_4	exon	11295891	11297220	11295891	ID=Msa0315110-mRNA-1:exon:4355;Parent=Msa0315110-mRNA-1
chr2_4	exon	11297894	11298242	11297894	ID=Msa0315110-mRNA-1:exon:4356;Parent=Msa0315110-mRNA-1
chr2_4	exon	11298658	11299054	11298658	ID=Msa0315110-mRNA-1:exon:4357;Parent=Msa0315110-mRNA-1
chr2_4	five_prime_UTR	11293826	11293858	11293826	ID=Msa0315110-mRNA-1:five_prime_utr;Parent=Msa0315110-mRNA-1
chr2_4	five_prime_UTR	11294051	11294241	11294051	ID=Msa0315110-mRNA-1:five_prime_utr;Parent=Msa0315110-mRNA-1
chr2_4	CDS	11294242	11294969	11294242	ID=Msa0315110-mRNA-1:cds;Parent=Msa0315110-mRNA-1
chr2_4	CDS	11295891	11297220	11295891	ID=Msa0315110-mRNA-1:cds;Parent=Msa0315110-mRNA-1
chr2_4	CDS	11297894	11298238	11297894	ID=Msa0315110-mRNA-1:cds;Parent=Msa0315110-mRNA-1
chr2_4	three_prime_UTR	11298239	11298242	11298239	ID=Msa0315110-mRNA-1:three_prime_utr;Parent=Msa0315110-mRNA-1
chr2_4	three_prime_UTR	11298658	11299054	11298658	ID=Msa0315110-mRNA-1:three_prime_utr;Parent=Msa0315110-mRNA-1

Gene Sequence

>Msa0315110

ATGAAGAAGGAAGAAGAATCAACGGTTCAGATGGAATGGTTAACTTCAATTGATTCAACAACTCTCACACATTCAGAGCTTCAAGCACTTTCTCTCTCTTCTCTTTCTTCCTTCGACCTTAAATCTACACGCGAAATCGTCACTCCTAAAATCGATCCATCAACCTTCAACCACAGCGCTGGGTCCCACCGCACCTACTCCCGTCCTCACCGTCGATGTCGCGTCGCACCACCGCTTCTTCCAACTCCCACTCTCCCCTCCGACCACCGCATCATCATCGATTACCTCAAACAGTTCATCAGAGAAGATCCGAAGTTCGACACTGTTGAGCTTCGGAATCCTTCAATTCCGGAGGTGAAGGAATTTCCATTGGCATTGCCTGGTGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCGAAAGTGAAAACTCATTTGGAGGAAGAGATTGTGAACAAAAACGGTGTTGTGATTGATTTGGCGGCGTTATCGGAGGTGGAGCATCCGTTTGCGGCGGAGATAGCGAGAAGGACGGAGGGGTTAAAGGAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAGTGGGGAAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTTCTGATTTTGGTGATGTGTTGCCTTTGGGATGGAAGCTTCTTCTTAGTTTGAAAAGGAAAGATGGTCGTGCTTGGATTTATTGCCGCAGATATATAAGTCCTAATGGACAGCAGTTTCTGTCTTGCAAAGAAGTTTCTTCGTATCTGCAGTCTCTTTTTGGTCACACTGATACACAGTTACAAATCACTCAAAGGAGTGAAAATGTACTTCCGGAACAGAGAGTGACTACTGAAAATGTAAGTACCCCTGCTGCTGCTTCTGTTGCCCGCGAGGAGCAGGACCAACGACAGATTGTTGCCACTAACTCAAATGTGTCTGGTTTGTCCGTCTCTAATGAACGATTCAAGGAAATTGCCTTGCTGGAAATGGAGAACCTTGCAGATGTGCAAATACACGATCTGTTTGAATGTCACAAGTGCAGCTTGACCTTTGATGAGAAGGATGCATATTTGCAGCACCTGTTGTCTATTCATCAGAAGACAACGAGGCGGTATCGACTTGGTTCATCCGTTTCAGATGGAGTTATAATTAAAGATGGAAAATTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAACGTCGCTACAATAGTCATGTTGGGATTCATGTTAGGAATTATTTGAGGAGAGCTGAAGATTTGCCGGGTCAGCCTAATGTCCTGGGAGCAGAAGAGTCTCCAGTCACGGATGAGACACCTTCAAGGATCACGAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTATAGAGGATTCTATCATGGAGCCATCCTCTACACTAAATACGATACCTGTTTCAGAAATTGCGGTTGGCGACTTAGATGAAGATATAAATGCTGAGTCTCCATTCGGTGAACAGAAAATGGAAAAGAGCTTGACTGGCACAAATGTAGTTAGCGATCTAAATCAGCAAGGTAGTCCTCGTTTACCGATGGATGGAACAATAGAGGAAATTGATGCTAATAACCGAGTAGTTGATGCAAAGATGGTTAGTTTTCTAGATAACACTGGCTTGTTATCTGTAAATAAGAAAAATGTTGATGCACCTGATACTTCTGAAGGTAAAGGTGATGTGGCGCTGACTGTTGAGGGGTTTGATCATTCTGGGAGTGAACTGCAAGGAGCTTCTCAAAGTCCCTTGCTTCATTCATCTGGGAATCACATGAAACCTGGATCCAAGAAGAGTGAAAATTCTGGTTGCACTAATACTAAGGGGGATCTTAAATTTGATGAAGACAGTAGCAATAAGAGTGACTTGAAAATTGGTTTAGATAGCTGCAATGATGTACCTGGTGTTTCTAATGTTCATGTGACAGCAATGCCAACTTCTAAAGAAAATGTGGTCCAATCTAAGGTTTCTAACCCCTCGGTATCCCCAGAACAATCTTTGGATTCTTTTTCTGCATTCAGCTCCGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTAGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGGTTCTCTTGATGTGTCAACTGAATTGGCAAATGACATAGTGGTGCAAGGGACATGTGCATCCTCAGCTCAGTCTGCATCACAAGAAGTTATGTTAAATATGGATTACAAAAATCAGCTCACAACCACATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCCGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG

Protein sequence

>Msa0315110

MKKEEESTVQMEWLTSIDSTTLTHSELQALSLSSLSSFDLKSTREIVTPKIDPSTFNHSAGSHRTYSRPHRRCRVAPPLLPTPTLPSDHRIIIDYLKQFIREDPKFDTVELRNPSIPEVKEFPLALPGGEVRKRKRGRKPKVKTHLEEEIVNKNGVVIDLAALSEVEHPFAAEIARRTEGLKEEEELLGFLSDLVGQWGSRRRKRRIVDASDFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPNGQQFLSCKEVSSYLQSLFGHTDTQLQITQRSENVLPEQRVTTENVSTPAAASVAREEQDQRQIVATNSNVSGLSVSNERFKEIALLEMENLADVQIHDLFECHKCSLTFDEKDAYLQHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRRAEDLPGQPNVLGAEESPVTDETPSRITKMDALIEIAQNSIIEDSIMEPSSTLNTIPVSEIAVGDLDEDINAESPFGEQKMEKSLTGTNVVSDLNQQGSPRLPMDGTIEEIDANNRVVDAKMVSFLDNTGLLSVNKKNVDAPDTSEGKGDVALTVEGFDHSGSELQGASQSPLLHSSGNHMKPGSKKSENSGCTNTKGDLKFDEDSSNKSDLKIGLDSCNDVPGVSNVHVTAMPTSKENVVQSKVSNPSVSPEQSLDSFSAFSSDKGFQELRLEDISSLEYDFASVQGSLDVSTELANDIVVQGTCASSAQSASQEVMLNMDYKNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL*