Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316540 | XP_004486316.1 | 71.269 | 536 | 93 | 6 | 1 | 476 | 306 | 840 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316540 | sp|Q9SSE9|JMJ25_ARATH | 45.951 | 494 | 203 | 11 | 27 | 466 | 407 | 890 | 1.73e-129 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0316540 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316540 | MtrunA17_Chr2g0289121 | 66.085 | 516 | 124 | 6 | 1 | 476 | 324 | 828 | 0.0 | 682 |
| Msa0316540 | MtrunA17_Chr2g0289031 | 69.620 | 395 | 90 | 3 | 106 | 470 | 2 | 396 | 0.0 | 538 |
| Msa0316540 | MtrunA17_Chr1g0211711 | 46.481 | 540 | 210 | 10 | 1 | 467 | 515 | 1048 | 4.92e-144 | 439 |
| Msa0316540 | MtrunA17_Chr5g0426961 | 48.092 | 524 | 207 | 15 | 3 | 467 | 315 | 832 | 3.66e-141 | 425 |
| Msa0316540 | MtrunA17_Chr4g0075261 | 67.834 | 314 | 89 | 5 | 1 | 314 | 335 | 636 | 4.20e-138 | 418 |
| Msa0316540 | MtrunA17_Chr4g0075261 | 78.808 | 151 | 30 | 1 | 325 | 473 | 720 | 870 | 1.65e-73 | 248 |
| Msa0316540 | MtrunA17_Chr5g0420361 | 41.296 | 540 | 220 | 16 | 1 | 451 | 248 | 779 | 2.74e-110 | 344 |
| Msa0316540 | MtrunA17_Chr1g0211661 | 42.405 | 474 | 204 | 10 | 1 | 410 | 397 | 865 | 2.30e-107 | 338 |
| Msa0316540 | MtrunA17_Chr6g0472441 | 40.901 | 533 | 211 | 17 | 1 | 451 | 191 | 701 | 1.19e-106 | 333 |
| Msa0316540 | MtrunA17_Chr8g0361381 | 67.925 | 212 | 62 | 2 | 85 | 296 | 3 | 208 | 8.86e-103 | 306 |
| Msa0316540 | MtrunA17_Chr5g0448301 | 39.443 | 431 | 195 | 11 | 13 | 382 | 206 | 631 | 3.05e-86 | 277 |
| Msa0316540 | MtrunA17_Chr1g0211691 | 39.030 | 433 | 187 | 9 | 1 | 360 | 517 | 945 | 4.17e-85 | 281 |
| Msa0316540 | MtrunA17_Chr7g0275771 | 45.302 | 298 | 144 | 4 | 35 | 314 | 358 | 654 | 2.69e-84 | 278 |
| Msa0316540 | MtrunA17_Chr7g0275771 | 59.184 | 147 | 58 | 1 | 325 | 469 | 780 | 926 | 4.18e-50 | 183 |
| Msa0316540 | MtrunA17_Chr1g0183311 | 44.413 | 349 | 164 | 6 | 1 | 323 | 316 | 660 | 4.19e-82 | 271 |
| Msa0316540 | MtrunA17_Chr1g0183311 | 68.276 | 145 | 44 | 1 | 325 | 467 | 735 | 879 | 5.04e-58 | 206 |
| Msa0316540 | MtrunA17_Chr1g0147021 | 48.252 | 286 | 127 | 5 | 38 | 306 | 1059 | 1340 | 1.41e-77 | 264 |
| Msa0316540 | MtrunA17_Chr1g0147021 | 57.895 | 152 | 62 | 1 | 325 | 474 | 1551 | 1702 | 5.06e-48 | 178 |
| Msa0316540 | MtrunA17_Chr2g0289091 | 63.006 | 173 | 44 | 1 | 185 | 357 | 20 | 172 | 2.95e-67 | 221 |
| Msa0316540 | MtrunA17_Chr2g0289091 | 78.182 | 110 | 22 | 1 | 325 | 432 | 311 | 420 | 3.51e-51 | 179 |
| Msa0316540 | MtrunA17_Chr1g0192011 | 39.655 | 290 | 162 | 5 | 35 | 314 | 448 | 734 | 1.65e-61 | 216 |
| Msa0316540 | MtrunA17_Chr1g0192011 | 39.865 | 148 | 83 | 2 | 325 | 470 | 820 | 963 | 1.00e-28 | 120 |
| Msa0316540 | MtrunA17_Chr4g0048531 | 35.714 | 294 | 164 | 4 | 37 | 311 | 718 | 1005 | 1.26e-48 | 179 |
| Msa0316540 | MtrunA17_Chr4g0048531 | 39.891 | 183 | 105 | 3 | 291 | 469 | 1097 | 1278 | 4.81e-32 | 130 |
| Msa0316540 | MtrunA17_Chr8g0361391 | 54.605 | 152 | 26 | 3 | 326 | 475 | 52 | 162 | 1.13e-44 | 154 |
| Msa0316540 | MtrunA17_Chr1g0211701 | 66.071 | 112 | 36 | 1 | 358 | 467 | 4 | 115 | 2.37e-44 | 153 |
| Msa0316540 | MtrunA17_Chr7g0231061 | 52.941 | 136 | 64 | 0 | 175 | 310 | 12 | 147 | 2.73e-42 | 149 |
| Msa0316540 | MtrunA17_Chr2g0289101 | 68.000 | 100 | 30 | 2 | 1 | 99 | 47 | 145 | 2.45e-40 | 142 |
| Msa0316540 | MtrunA17_Chr2g0281051 | 34.797 | 296 | 163 | 9 | 36 | 310 | 418 | 704 | 4.18e-40 | 154 |
| Msa0316540 | MtrunA17_Chr2g0281051 | 43.243 | 148 | 82 | 1 | 324 | 469 | 809 | 956 | 4.14e-32 | 130 |
| Msa0316540 | MtrunA17_Chr8g0340381 | 64.368 | 87 | 27 | 2 | 209 | 295 | 36 | 118 | 4.16e-30 | 115 |
| Msa0316540 | MtrunA17_Chr2g0289041 | 76.786 | 56 | 13 | 0 | 1 | 56 | 149 | 204 | 2.70e-23 | 97.4 |
| Msa0316540 | MtrunA17_Chr1g0211671 | 55.932 | 59 | 26 | 0 | 409 | 467 | 15 | 73 | 1.16e-13 | 67.8 |
| Msa0316540 | MtrunA17_Chr8g0364421 | 30.625 | 160 | 93 | 5 | 11 | 159 | 65 | 217 | 2.32e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316540 | AT1G11950.1 | 55.945 | 513 | 178 | 11 | 2 | 470 | 363 | 871 | 0.0 | 555 |
| Msa0316540 | AT1G11950.3 | 55.945 | 513 | 178 | 11 | 2 | 470 | 363 | 871 | 0.0 | 555 |
| Msa0316540 | AT1G62310.1 | 56.175 | 502 | 166 | 8 | 1 | 450 | 378 | 877 | 0.0 | 538 |
| Msa0316540 | AT1G11950.2 | 53.047 | 443 | 160 | 11 | 2 | 400 | 363 | 801 | 7.29e-148 | 442 |
| Msa0316540 | AT3G07610.1 | 45.951 | 494 | 203 | 11 | 27 | 466 | 407 | 890 | 1.76e-130 | 403 |
| Msa0316540 | AT4G00990.3 | 48.980 | 294 | 132 | 5 | 27 | 304 | 270 | 561 | 3.53e-86 | 281 |
| Msa0316540 | AT4G00990.3 | 51.064 | 94 | 44 | 1 | 325 | 416 | 685 | 778 | 4.78e-23 | 103 |
| Msa0316540 | AT4G00990.2 | 48.980 | 294 | 132 | 5 | 27 | 304 | 270 | 561 | 3.66e-86 | 281 |
| Msa0316540 | AT4G00990.2 | 54.651 | 86 | 37 | 1 | 325 | 408 | 685 | 770 | 2.96e-22 | 100 |
| Msa0316540 | AT4G00990.1 | 49.147 | 293 | 131 | 5 | 27 | 303 | 270 | 560 | 6.30e-86 | 281 |
| Msa0316540 | AT4G00990.1 | 53.642 | 151 | 68 | 1 | 325 | 473 | 685 | 835 | 5.08e-46 | 171 |
| Msa0316540 | AT3G07610.2 | 42.955 | 291 | 136 | 7 | 27 | 297 | 407 | 687 | 4.90e-65 | 224 |
| Msa0316540 | AT3G07610.3 | 42.907 | 289 | 135 | 7 | 27 | 295 | 407 | 685 | 1.15e-63 | 223 |
| Msa0316540 | AT3G07610.3 | 63.194 | 144 | 51 | 1 | 325 | 466 | 769 | 912 | 3.27e-51 | 187 |
| Msa0316540 | AT1G09060.2 | 27.660 | 517 | 277 | 14 | 35 | 470 | 393 | 893 | 1.62e-46 | 173 |
| Msa0316540 | AT1G09060.1 | 27.660 | 517 | 277 | 14 | 35 | 470 | 393 | 893 | 1.62e-46 | 173 |
| Msa0316540 | AT1G09060.4 | 27.660 | 517 | 277 | 14 | 35 | 470 | 407 | 907 | 1.86e-46 | 173 |
| Msa0316540 | AT1G09060.3 | 27.660 | 517 | 277 | 14 | 35 | 470 | 407 | 907 | 1.86e-46 | 173 |
| Msa0316540 | AT4G21430.1 | 37.745 | 204 | 120 | 3 | 108 | 311 | 490 | 686 | 5.49e-33 | 133 |
| Msa0316540 | AT4G21430.1 | 36.000 | 150 | 93 | 2 | 329 | 476 | 773 | 921 | 4.24e-25 | 109 |
Find 88 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTTAGATGCATATTTA+AGG | 0.171830 | 2_4:-13682036 | Msa0316540:CDS |
| CCACAACCTCCAAGTTCTTT+TGG | 0.207866 | 2_4:+13683492 | None:intergenic |
| AGAACATCACGAACTATAAT+TGG | 0.208434 | 2_4:+13683237 | None:intergenic |
| TCTCTTGCCTTGTGATTCTT+TGG | 0.213845 | 2_4:+13681429 | None:intergenic |
| AAAAGTATGCCTAAATTCTT+TGG | 0.242870 | 2_4:+13682006 | None:intergenic |
| GAGAGCATTGTGCGCAAATT+TGG | 0.252466 | 2_4:-13683172 | Msa0316540:CDS |
| CAGAAACTGGTGGTGCTCTT+TGG | 0.271763 | 2_4:-13682082 | Msa0316540:CDS |
| ACATGTCATAAAGCCTGATT+TGG | 0.301815 | 2_4:-13682481 | Msa0316540:CDS |
| TTGTGGCTGTGGTTGTGTTA+TGG | 0.319953 | 2_4:-13683475 | Msa0316540:CDS |
| TTGTGCGCAAATTTGGCTTC+AGG | 0.324597 | 2_4:-13683165 | Msa0316540:CDS |
| CACAAAACTTCACTGTGATA+TGG | 0.326801 | 2_4:-13682400 | Msa0316540:CDS |
| AGAAACTGGTGGTGCTCTTT+GGG | 0.329119 | 2_4:-13682081 | Msa0316540:CDS |
| GGAAACACTCCAAAGAATTT+AGG | 0.337467 | 2_4:-13682015 | Msa0316540:CDS |
| CTTCATGATATACTGAGCTT+TGG | 0.368964 | 2_4:+13683407 | None:intergenic |
| AAATCAGATATTCTCCCATT+TGG | 0.371858 | 2_4:+13683435 | None:intergenic |
| ATCACTATTAGCATTCCATT+TGG | 0.401903 | 2_4:+13683533 | None:intergenic |
| AGGTTTGAGTTGGGAGCCTA+TGG | 0.429318 | 2_4:-13683202 | Msa0316540:CDS |
| TTGCCTTGTGATTCTTTGGA+AGG | 0.429524 | 2_4:+13681433 | None:intergenic |
| TAATATAGTACCTGTTCAAC+TGG | 0.429527 | 2_4:+13681977 | None:intergenic |
| CTGAAACGCATGCTTCCAAA+TGG | 0.431339 | 2_4:-13683450 | Msa0316540:CDS |
| CTTCTAATTCTTGTACAGCT+TGG | 0.439855 | 2_4:+13681243 | None:intergenic |
| GTTGGGAGCCTATGGTTACT+TGG | 0.443800 | 2_4:-13683194 | Msa0316540:CDS |
| TGACCTTGAGATTTCTGACT+TGG | 0.453559 | 2_4:+13681654 | None:intergenic |
| TGGAAGGTGTCGAAACTCTT+CGG | 0.459153 | 2_4:+13681449 | None:intergenic |
| CAAATTCTTCAAAGGTTACA+AGG | 0.462776 | 2_4:-13682682 | Msa0316540:CDS |
| TGCTCAAAAGAAACAGAAAC+TGG | 0.463190 | 2_4:-13682095 | Msa0316540:CDS |
| TGGACATTTGAGCAGAAACT+TGG | 0.466489 | 2_4:-13681710 | Msa0316540:CDS |
| AACAAGGGACAGGTTTGAGT+TGG | 0.470587 | 2_4:-13683212 | Msa0316540:CDS |
| GCAACTTTGCAGCAAGGTTG+AGG | 0.472874 | 2_4:+13682508 | None:intergenic |
| ACAAGGGACAGGTTTGAGTT+GGG | 0.475477 | 2_4:-13683211 | Msa0316540:CDS |
| CCAAAAGAACTTGGAGGTTG+TGG | 0.477429 | 2_4:-13683492 | Msa0316540:CDS |
| GTATCAAAATTTGTTGGTAG+AGG | 0.479805 | 2_4:+13683588 | None:intergenic |
| GGATCGCTATACTCTTGAAA+TGG | 0.490375 | 2_4:+13682543 | None:intergenic |
| TTGAATTTCGAAAGCATTGG+AGG | 0.493283 | 2_4:-13683269 | Msa0316540:CDS |
| TTTCGAAAGCATTGGAGGAA+TGG | 0.494705 | 2_4:-13683264 | Msa0316540:CDS |
| AGTAAAAGCCATCGATTGCT+TGG | 0.495169 | 2_4:-13683118 | Msa0316540:CDS |
| GAACTTGGAGGTTGTGGCTG+TGG | 0.508394 | 2_4:-13683486 | Msa0316540:CDS |
| GAGTATAGCGATCCTCGAGC+TGG | 0.509998 | 2_4:-13682534 | Msa0316540:CDS |
| GATGTTCTTAAACAAGGGAC+AGG | 0.511480 | 2_4:-13683222 | Msa0316540:CDS |
| AACACTCGCAAATTCTTCAA+AGG | 0.513485 | 2_4:-13682690 | Msa0316540:CDS |
| ATGTTGAGACATTCACCAAA+TGG | 0.520138 | 2_4:-13683548 | Msa0316540:CDS |
| AGATGCTCAAGCTAAAAGAT+TGG | 0.520601 | 2_4:-13682629 | Msa0316540:CDS |
| TTTCATTAGATGCTCATCAC+TGG | 0.524868 | 2_4:-13681219 | Msa0316540:CDS |
| AAGTTTCTGCTCAAATGTCC+AGG | 0.526250 | 2_4:+13681712 | None:intergenic |
| AGAGTTTATGATTACATGCA+TGG | 0.527676 | 2_4:-13683618 | Msa0316540:CDS |
| CATGTCATAAAGCCTGATTT+GGG | 0.535555 | 2_4:-13682480 | Msa0316540:CDS |
| ATCAAAGAAGAACGTGGAAG+AGG | 0.535961 | 2_4:-13682432 | Msa0316540:CDS |
| TTGAGATTTCTGACTTGGTG+TGG | 0.545685 | 2_4:+13681659 | None:intergenic |
| TTTGATACAAACAATTCAGA+CGG | 0.552356 | 2_4:-13683573 | Msa0316540:CDS |
| AAATCAGGCTTTATGACATG+TGG | 0.556215 | 2_4:+13682483 | None:intergenic |
| TTCGTGATGTTCTTAAACAA+GGG | 0.556466 | 2_4:-13683227 | Msa0316540:CDS |
| CGATTGCTTGGCTAGTTGTG+AGG | 0.557110 | 2_4:-13683106 | Msa0316540:intron |
| AAATGGAATGCTAATAGTGA+TGG | 0.557384 | 2_4:-13683531 | Msa0316540:CDS |
| TTCTTCAAAGGTTACAAGGA+GGG | 0.559654 | 2_4:-13682678 | Msa0316540:CDS |
| GTTCGTGATGTTCTTAAACA+AGG | 0.566626 | 2_4:-13683228 | Msa0316540:CDS |
| TGAGCATAAGAAGAAGCTAA+AGG | 0.568843 | 2_4:-13681837 | Msa0316540:CDS |
| TTTATAAGGTCACTTGACAA+TGG | 0.570123 | 2_4:+13683303 | None:intergenic |
| GAAGCAGTATATATTCCTGC+TGG | 0.570889 | 2_4:-13681686 | Msa0316540:CDS |
| ACTTGGTGTGGACATCCAGC+AGG | 0.572126 | 2_4:+13681671 | None:intergenic |
| GAATGTGCTCCAAAAGAACT+TGG | 0.573014 | 2_4:-13683501 | Msa0316540:CDS |
| TAAGGTCACTTGACAATGGA+CGG | 0.574775 | 2_4:+13683307 | None:intergenic |
| CTTTGGGACATATTCAGAAG+AGG | 0.576808 | 2_4:-13682065 | Msa0316540:CDS |
| TGAAACGCATGCTTCCAAAT+GGG | 0.579984 | 2_4:-13683449 | Msa0316540:CDS |
| TCAATTACAGGTGTAGAACC+TGG | 0.581857 | 2_4:-13681730 | Msa0316540:intron |
| AATCAGGCTTTATGACATGT+GGG | 0.582306 | 2_4:+13682484 | None:intergenic |
| AACATTGGTCATGAATAGGA+TGG | 0.583998 | 2_4:+13681873 | None:intergenic |
| TTGTTTGTATCAAAATTTGT+TGG | 0.593330 | 2_4:+13683582 | None:intergenic |
| TATTTGAATTTCGAAAGCAT+TGG | 0.595321 | 2_4:-13683272 | Msa0316540:CDS |
| AGATCTTCAAACTTGTCAGA+AGG | 0.605347 | 2_4:+13682603 | None:intergenic |
| AATGCTCTCCAAGTAACCAT+AGG | 0.613712 | 2_4:+13683186 | None:intergenic |
| ACAACTAGCCAAGCAATCGA+TGG | 0.616859 | 2_4:+13683110 | None:intergenic |
| ACTCTTGAAATGGCAAGCAA+CGG | 0.622659 | 2_4:+13682553 | None:intergenic |
| TCAGGCTTTATGACATGTGG+GGG | 0.630295 | 2_4:+13682486 | None:intergenic |
| TCTTCAAACTTGTCAGAAGG+TGG | 0.634708 | 2_4:+13682606 | None:intergenic |
| ATCAGGCTTTATGACATGTG+GGG | 0.635513 | 2_4:+13682485 | None:intergenic |
| TGTGCTCCAAAAGAACTTGG+AGG | 0.649295 | 2_4:-13683498 | Msa0316540:CDS |
| ACACCAAGTCAGAAATCTCA+AGG | 0.651808 | 2_4:-13681657 | Msa0316540:intron |
| TCACTGTGATATGGAAGATG+CGG | 0.657159 | 2_4:-13682391 | Msa0316540:intron |
| ATTTGGTGAATGTCTCAACA+TGG | 0.662216 | 2_4:+13683550 | None:intergenic |
| ATTCTTCAAAGGTTACAAGG+AGG | 0.679618 | 2_4:-13682679 | Msa0316540:CDS |
| AACGGATAAACTCATCACAA+TGG | 0.689117 | 2_4:+13682571 | None:intergenic |
| AGGTTGAGGATTCCAGCTCG+AGG | 0.693598 | 2_4:+13682522 | None:intergenic |
| ACACCTTCCAAAGAATCACA+AGG | 0.701409 | 2_4:-13681436 | Msa0316540:CDS |
| TATGGAATCAAAGAAGAACG+TGG | 0.705524 | 2_4:-13682438 | Msa0316540:CDS |
| TCAAAAGAAACAGAAACTGG+TGG | 0.714549 | 2_4:-13682092 | Msa0316540:CDS |
| ATAAACTCATCACAATGGCG+CGG | 0.720209 | 2_4:+13682576 | None:intergenic |
| GGCAAGAGAAGACAAACTTG+AGG | 0.724823 | 2_4:-13681415 | Msa0316540:intron |
| GTTTATGATTACATGCATGG+TGG | 0.768841 | 2_4:-13683615 | Msa0316540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATTAGAAAATTAAAAA+GGG | - | chr2_4:13682640-13682659 | Msa0316540:CDS | 10.0% |
| !!! | AATTGATTGATATTTTTTAA+TGG | - | chr2_4:13683553-13683572 | Msa0316540:CDS | 10.0% |
| !! | TGTTATTAGAAAATTAAAAA+GGG | - | chr2_4:13682640-13682659 | Msa0316540:CDS | 10.0% |
| !!! | AATTGATTGATATTTTTTAA+TGG | - | chr2_4:13683553-13683572 | Msa0316540:CDS | 10.0% |
| !!! | AGTAAACTTCTTTTTATATA+TGG | - | chr2_4:13681806-13681825 | Msa0316540:intron | 15.0% |
| !! | TAACTTTATATGCATATATT+TGG | - | chr2_4:13682101-13682120 | Msa0316540:CDS | 15.0% |
| !! | AACTTTATATGCATATATTT+GGG | - | chr2_4:13682102-13682121 | Msa0316540:CDS | 15.0% |
| !! | CTGTTATTAGAAAATTAAAA+AGG | - | chr2_4:13682639-13682658 | Msa0316540:CDS | 15.0% |
| !!! | AGTAAACTTCTTTTTATATA+TGG | - | chr2_4:13681806-13681825 | Msa0316540:intron | 15.0% |
| !! | TAACTTTATATGCATATATT+TGG | - | chr2_4:13682101-13682120 | Msa0316540:CDS | 15.0% |
| !! | AACTTTATATGCATATATTT+GGG | - | chr2_4:13682102-13682121 | Msa0316540:CDS | 15.0% |
| !! | CTGTTATTAGAAAATTAAAA+AGG | - | chr2_4:13682639-13682658 | Msa0316540:CDS | 15.0% |
| !! | TTGTTTGTATCAAAATTTGT+TGG | + | chr2_4:13681274-13681293 | None:intergenic | 20.0% |
| !!! | CAAATAGCATTTCTTTTATA+AGG | + | chr2_4:13681567-13681586 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGTAAGTGAGT+CGG | + | chr2_4:13681898-13681917 | None:intergenic | 20.0% |
| !!! | AAAAACACTTTTAAAGCATA+TGG | + | chr2_4:13682018-13682037 | None:intergenic | 20.0% |
| !!! | AATTAGATTTTGAAGCTAAA+TGG | + | chr2_4:13682059-13682078 | None:intergenic | 20.0% |
| !! | GAAGAACATATAAAAATCAT+TGG | - | chr2_4:13682197-13682216 | Msa0316540:intron | 20.0% |
| !! | TAGAAACAATAAAGTAAATG+TGG | + | chr2_4:13682541-13682560 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATAAATTTGAC+AGG | - | chr2_4:13682565-13682584 | Msa0316540:CDS | 20.0% |
| !! | AAAAGTTAGATGCATATTTA+AGG | - | chr2_4:13682817-13682836 | Msa0316540:intron | 20.0% |
| !! | CAATAGTCAAATAAAAACAT+TGG | + | chr2_4:13682998-13683017 | None:intergenic | 20.0% |
| !! | GTAGAAAAAATACATGTATT+TGG | - | chr2_4:13683261-13683280 | Msa0316540:CDS | 20.0% |
| !! | TTGTTTGTATCAAAATTTGT+TGG | + | chr2_4:13681274-13681293 | None:intergenic | 20.0% |
| !!! | CAAATAGCATTTCTTTTATA+AGG | + | chr2_4:13681567-13681586 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAGTAAGTGAGT+CGG | + | chr2_4:13681898-13681917 | None:intergenic | 20.0% |
| !!! | AAAAACACTTTTAAAGCATA+TGG | + | chr2_4:13682018-13682037 | None:intergenic | 20.0% |
| !!! | AATTAGATTTTGAAGCTAAA+TGG | + | chr2_4:13682059-13682078 | None:intergenic | 20.0% |
| !! | GAAGAACATATAAAAATCAT+TGG | - | chr2_4:13682197-13682216 | Msa0316540:intron | 20.0% |
| !! | TAGAAACAATAAAGTAAATG+TGG | + | chr2_4:13682541-13682560 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATAAATTTGAC+AGG | - | chr2_4:13682565-13682584 | Msa0316540:CDS | 20.0% |
| !! | AAAAGTTAGATGCATATTTA+AGG | - | chr2_4:13682817-13682836 | Msa0316540:intron | 20.0% |
| !! | CAATAGTCAAATAAAAACAT+TGG | + | chr2_4:13682998-13683017 | None:intergenic | 20.0% |
| !! | GTAGAAAAAATACATGTATT+TGG | - | chr2_4:13683261-13683280 | Msa0316540:CDS | 20.0% |
| ! | TTTGATACAAACAATTCAGA+CGG | - | chr2_4:13681280-13681299 | Msa0316540:intron | 25.0% |
| !! | TATTTGAATTTCGAAAGCAT+TGG | - | chr2_4:13681581-13681600 | Msa0316540:intron | 25.0% |
| !! | TTTTGAATTGTGTAAGTCTA+TGG | - | chr2_4:13681833-13681852 | Msa0316540:CDS | 25.0% |
| !!! | TATTTACGTTTTATTCCTTC+AGG | - | chr2_4:13681954-13681973 | Msa0316540:intron | 25.0% |
| !! | GTACATTTAAAGTCATGTTT+CGG | - | chr2_4:13681980-13681999 | Msa0316540:intron | 25.0% |
| !! | TACATTTAAAGTCATGTTTC+GGG | - | chr2_4:13681981-13682000 | Msa0316540:intron | 25.0% |
| !! | CCATAAGCAATATAAGTTTT+TGG | + | chr2_4:13682400-13682419 | None:intergenic | 25.0% |
| ! | CCAAAAACTTATATTGCTTA+TGG | - | chr2_4:13682397-13682416 | Msa0316540:CDS | 25.0% |
| !! | AAAATTAAAAAGGGCACATA+AGG | - | chr2_4:13682649-13682668 | Msa0316540:CDS | 25.0% |
| ! | AAATTTCCATTAATCTCCAA+GGG | + | chr2_4:13682716-13682735 | None:intergenic | 25.0% |
| !! | AAAAGTATGCCTAAATTCTT+TGG | + | chr2_4:13682850-13682869 | None:intergenic | 25.0% |
| !! | AACTTCTTTGTTGGTTAATT+AGG | - | chr2_4:13682953-13682972 | Msa0316540:intron | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | + | chr2_4:13682987-13683006 | None:intergenic | 25.0% |
| ! | CAAAAGAAAGAAAGACAAAA+AGG | + | chr2_4:13683491-13683510 | None:intergenic | 25.0% |
| ! | TTTGATACAAACAATTCAGA+CGG | - | chr2_4:13681280-13681299 | Msa0316540:intron | 25.0% |
| !! | TATTTGAATTTCGAAAGCAT+TGG | - | chr2_4:13681581-13681600 | Msa0316540:intron | 25.0% |
| !! | TTTTGAATTGTGTAAGTCTA+TGG | - | chr2_4:13681833-13681852 | Msa0316540:CDS | 25.0% |
| !!! | TATTTACGTTTTATTCCTTC+AGG | - | chr2_4:13681954-13681973 | Msa0316540:intron | 25.0% |
| !! | GTACATTTAAAGTCATGTTT+CGG | - | chr2_4:13681980-13681999 | Msa0316540:intron | 25.0% |
| !! | TACATTTAAAGTCATGTTTC+GGG | - | chr2_4:13681981-13682000 | Msa0316540:intron | 25.0% |
| !! | CCATAAGCAATATAAGTTTT+TGG | + | chr2_4:13682400-13682419 | None:intergenic | 25.0% |
| ! | CCAAAAACTTATATTGCTTA+TGG | - | chr2_4:13682397-13682416 | Msa0316540:CDS | 25.0% |
| !! | AAAATTAAAAAGGGCACATA+AGG | - | chr2_4:13682649-13682668 | Msa0316540:CDS | 25.0% |
| ! | AAATTTCCATTAATCTCCAA+GGG | + | chr2_4:13682716-13682735 | None:intergenic | 25.0% |
| !! | AAAAGTATGCCTAAATTCTT+TGG | + | chr2_4:13682850-13682869 | None:intergenic | 25.0% |
| !! | AACTTCTTTGTTGGTTAATT+AGG | - | chr2_4:13682953-13682972 | Msa0316540:intron | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | + | chr2_4:13682987-13683006 | None:intergenic | 25.0% |
| ! | CAAAAGAAAGAAAGACAAAA+AGG | + | chr2_4:13683491-13683510 | None:intergenic | 25.0% |
| AGAGTTTATGATTACATGCA+TGG | - | chr2_4:13681235-13681254 | Msa0316540:CDS | 30.0% | |
| !! | GTATCAAAATTTGTTGGTAG+AGG | + | chr2_4:13681268-13681287 | None:intergenic | 30.0% |
| ATCACTATTAGCATTCCATT+TGG | + | chr2_4:13681323-13681342 | None:intergenic | 30.0% | |
| AAATGGAATGCTAATAGTGA+TGG | - | chr2_4:13681322-13681341 | Msa0316540:intron | 30.0% | |
| AAATCAGATATTCTCCCATT+TGG | + | chr2_4:13681421-13681440 | None:intergenic | 30.0% | |
| TTTATAAGGTCACTTGACAA+TGG | + | chr2_4:13681553-13681572 | None:intergenic | 30.0% | |
| AGAACATCACGAACTATAAT+TGG | + | chr2_4:13681619-13681638 | None:intergenic | 30.0% | |
| TTCGTGATGTTCTTAAACAA+GGG | - | chr2_4:13681626-13681645 | Msa0316540:intron | 30.0% | |
| !! | TTGAATTCTTTGGCTCATTT+TGG | - | chr2_4:13681771-13681790 | Msa0316540:intron | 30.0% |
| AAGTCTATGGCATATTAATG+AGG | - | chr2_4:13681846-13681865 | Msa0316540:CDS | 30.0% | |
| TGGTTGAAAAGGATGAATAT+TGG | + | chr2_4:13682128-13682147 | None:intergenic | 30.0% | |
| CAAATTCTTCAAAGGTTACA+AGG | - | chr2_4:13682171-13682190 | Msa0316540:intron | 30.0% | |
| !!! | TATTTTGACTCATACAACTG+AGG | - | chr2_4:13682592-13682611 | Msa0316540:CDS | 30.0% |
| !!! | ATTTTGACTCATACAACTGA+GGG | - | chr2_4:13682593-13682612 | Msa0316540:CDS | 30.0% |
| AATTTCCATTAATCTCCAAG+GGG | + | chr2_4:13682715-13682734 | None:intergenic | 30.0% | |
| CAAATTTCCATTAATCTCCA+AGG | + | chr2_4:13682717-13682736 | None:intergenic | 30.0% | |
| TAATATAGTACCTGTTCAAC+TGG | + | chr2_4:13682879-13682898 | None:intergenic | 30.0% | |
| TAACCAACAAAGAAGTTAGT+GGG | + | chr2_4:13682950-13682969 | None:intergenic | 30.0% | |
| TTAACCAACAAAGAAGTTAG+TGG | + | chr2_4:13682951-13682970 | None:intergenic | 30.0% | |
| CATGACTCTTAATCAATTAC+AGG | - | chr2_4:13683111-13683130 | Msa0316540:CDS | 30.0% | |
| !! | ATTTTCTGGTGAAACAAAGT+CGG | + | chr2_4:13683362-13683381 | None:intergenic | 30.0% |
| AGAGTTTATGATTACATGCA+TGG | - | chr2_4:13681235-13681254 | Msa0316540:CDS | 30.0% | |
| !! | GTATCAAAATTTGTTGGTAG+AGG | + | chr2_4:13681268-13681287 | None:intergenic | 30.0% |
| ATCACTATTAGCATTCCATT+TGG | + | chr2_4:13681323-13681342 | None:intergenic | 30.0% | |
| AAATGGAATGCTAATAGTGA+TGG | - | chr2_4:13681322-13681341 | Msa0316540:intron | 30.0% | |
| AAATCAGATATTCTCCCATT+TGG | + | chr2_4:13681421-13681440 | None:intergenic | 30.0% | |
| TTTATAAGGTCACTTGACAA+TGG | + | chr2_4:13681553-13681572 | None:intergenic | 30.0% | |
| AGAACATCACGAACTATAAT+TGG | + | chr2_4:13681619-13681638 | None:intergenic | 30.0% | |
| TTCGTGATGTTCTTAAACAA+GGG | - | chr2_4:13681626-13681645 | Msa0316540:intron | 30.0% | |
| !! | TTGAATTCTTTGGCTCATTT+TGG | - | chr2_4:13681771-13681790 | Msa0316540:intron | 30.0% |
| AAGTCTATGGCATATTAATG+AGG | - | chr2_4:13681846-13681865 | Msa0316540:CDS | 30.0% | |
| TGGTTGAAAAGGATGAATAT+TGG | + | chr2_4:13682128-13682147 | None:intergenic | 30.0% | |
| CAAATTCTTCAAAGGTTACA+AGG | - | chr2_4:13682171-13682190 | Msa0316540:intron | 30.0% | |
| !!! | TATTTTGACTCATACAACTG+AGG | - | chr2_4:13682592-13682611 | Msa0316540:CDS | 30.0% |
| !!! | ATTTTGACTCATACAACTGA+GGG | - | chr2_4:13682593-13682612 | Msa0316540:CDS | 30.0% |
| AATTTCCATTAATCTCCAAG+GGG | + | chr2_4:13682715-13682734 | None:intergenic | 30.0% | |
| CAAATTTCCATTAATCTCCA+AGG | + | chr2_4:13682717-13682736 | None:intergenic | 30.0% | |
| TAATATAGTACCTGTTCAAC+TGG | + | chr2_4:13682879-13682898 | None:intergenic | 30.0% | |
| TAACCAACAAAGAAGTTAGT+GGG | + | chr2_4:13682950-13682969 | None:intergenic | 30.0% | |
| TTAACCAACAAAGAAGTTAG+TGG | + | chr2_4:13682951-13682970 | None:intergenic | 30.0% | |
| CATGACTCTTAATCAATTAC+AGG | - | chr2_4:13683111-13683130 | Msa0316540:CDS | 30.0% | |
| !! | ATTTTCTGGTGAAACAAAGT+CGG | + | chr2_4:13683362-13683381 | None:intergenic | 30.0% |
| GTTTATGATTACATGCATGG+TGG | - | chr2_4:13681238-13681257 | Msa0316540:CDS | 35.0% | |
| ! | ATTTGGTGAATGTCTCAACA+TGG | + | chr2_4:13681306-13681325 | None:intergenic | 35.0% |
| ATGTTGAGACATTCACCAAA+TGG | - | chr2_4:13681305-13681324 | Msa0316540:intron | 35.0% | |
| CTTCATGATATACTGAGCTT+TGG | + | chr2_4:13681449-13681468 | None:intergenic | 35.0% | |
| !! | TTGAATTTCGAAAGCATTGG+AGG | - | chr2_4:13681584-13681603 | Msa0316540:intron | 35.0% |
| GTTCGTGATGTTCTTAAACA+AGG | - | chr2_4:13681625-13681644 | Msa0316540:intron | 35.0% | |
| GTTGTGAGGTTTGAATTCTT+TGG | - | chr2_4:13681761-13681780 | Msa0316540:intron | 35.0% | |
| TAATGAGGCCTACAACAAAT+TGG | - | chr2_4:13681861-13681880 | Msa0316540:CDS | 35.0% | |
| !! | AAGTTCCTCCAATTTGTTGT+AGG | + | chr2_4:13681872-13681891 | None:intergenic | 35.0% |
| ! | ATTTAAAGTCATGTTTCGGG+TGG | - | chr2_4:13681984-13682003 | Msa0316540:intron | 35.0% |
| GTGTTAATTTCTACCTGCAA+TGG | + | chr2_4:13682148-13682167 | None:intergenic | 35.0% | |
| AACACTCGCAAATTCTTCAA+AGG | - | chr2_4:13682163-13682182 | Msa0316540:intron | 35.0% | |
| ATTCTTCAAAGGTTACAAGG+AGG | - | chr2_4:13682174-13682193 | Msa0316540:intron | 35.0% | |
| TTCTTCAAAGGTTACAAGGA+GGG | - | chr2_4:13682175-13682194 | Msa0316540:intron | 35.0% | |
| AGATGCTCAAGCTAAAAGAT+TGG | - | chr2_4:13682224-13682243 | Msa0316540:intron | 35.0% | |
| AGATCTTCAAACTTGTCAGA+AGG | + | chr2_4:13682253-13682272 | None:intergenic | 35.0% | |
| AACGGATAAACTCATCACAA+TGG | + | chr2_4:13682285-13682304 | None:intergenic | 35.0% | |
| ! | AATCAGGCTTTATGACATGT+GGG | + | chr2_4:13682372-13682391 | None:intergenic | 35.0% |
| ! | AAATCAGGCTTTATGACATG+TGG | + | chr2_4:13682373-13682392 | None:intergenic | 35.0% |
| ACATGTCATAAAGCCTGATT+TGG | - | chr2_4:13682372-13682391 | Msa0316540:intron | 35.0% | |
| CATGTCATAAAGCCTGATTT+GGG | - | chr2_4:13682373-13682392 | Msa0316540:intron | 35.0% | |
| !! | TAAGTTTTTGGACCCAAATC+AGG | + | chr2_4:13682388-13682407 | None:intergenic | 35.0% |
| TATGGAATCAAAGAAGAACG+TGG | - | chr2_4:13682415-13682434 | Msa0316540:CDS | 35.0% | |
| CACAAAACTTCACTGTGATA+TGG | - | chr2_4:13682453-13682472 | Msa0316540:CDS | 35.0% | |
| !! | TTTTGACTCATACAACTGAG+GGG | - | chr2_4:13682594-13682613 | Msa0316540:CDS | 35.0% |
| TCAAGATAATATAGACCCCT+TGG | - | chr2_4:13682697-13682716 | Msa0316540:CDS | 35.0% | |
| TGCTCAAAAGAAACAGAAAC+TGG | - | chr2_4:13682758-13682777 | Msa0316540:intron | 35.0% | |
| TCAAAAGAAACAGAAACTGG+TGG | - | chr2_4:13682761-13682780 | Msa0316540:intron | 35.0% | |
| GGAAACACTCCAAAGAATTT+AGG | - | chr2_4:13682838-13682857 | Msa0316540:intron | 35.0% | |
| ! | TTTTTGTTCTCCAGTTGAAC+AGG | - | chr2_4:13682866-13682885 | Msa0316540:intron | 35.0% |
| AACATTGGTCATGAATAGGA+TGG | + | chr2_4:13682983-13683002 | None:intergenic | 35.0% | |
| TGAGCATAAGAAGAAGCTAA+AGG | - | chr2_4:13683016-13683035 | Msa0316540:intron | 35.0% | |
| AAGAAGCTAAAGGAAGAGTT+TGG | - | chr2_4:13683026-13683045 | Msa0316540:intron | 35.0% | |
| ACTAATTGCATGATGCATTG+AGG | + | chr2_4:13683079-13683098 | None:intergenic | 35.0% | |
| ! | ATGCAGATATGCACATTTTC+TGG | + | chr2_4:13683376-13683395 | None:intergenic | 35.0% |
| CTTCTAATTCTTGTACAGCT+TGG | + | chr2_4:13683613-13683632 | None:intergenic | 35.0% | |
| TTTCATTAGATGCTCATCAC+TGG | - | chr2_4:13683634-13683653 | Msa0316540:CDS | 35.0% | |
| GTTTATGATTACATGCATGG+TGG | - | chr2_4:13681238-13681257 | Msa0316540:CDS | 35.0% | |
| ! | ATTTGGTGAATGTCTCAACA+TGG | + | chr2_4:13681306-13681325 | None:intergenic | 35.0% |
| ATGTTGAGACATTCACCAAA+TGG | - | chr2_4:13681305-13681324 | Msa0316540:intron | 35.0% | |
| CTTCATGATATACTGAGCTT+TGG | + | chr2_4:13681449-13681468 | None:intergenic | 35.0% | |
| !! | TTGAATTTCGAAAGCATTGG+AGG | - | chr2_4:13681584-13681603 | Msa0316540:intron | 35.0% |
| GTTCGTGATGTTCTTAAACA+AGG | - | chr2_4:13681625-13681644 | Msa0316540:intron | 35.0% | |
| GTTGTGAGGTTTGAATTCTT+TGG | - | chr2_4:13681761-13681780 | Msa0316540:intron | 35.0% | |
| TAATGAGGCCTACAACAAAT+TGG | - | chr2_4:13681861-13681880 | Msa0316540:CDS | 35.0% | |
| !! | AAGTTCCTCCAATTTGTTGT+AGG | + | chr2_4:13681872-13681891 | None:intergenic | 35.0% |
| ! | ATTTAAAGTCATGTTTCGGG+TGG | - | chr2_4:13681984-13682003 | Msa0316540:intron | 35.0% |
| GTGTTAATTTCTACCTGCAA+TGG | + | chr2_4:13682148-13682167 | None:intergenic | 35.0% | |
| AACACTCGCAAATTCTTCAA+AGG | - | chr2_4:13682163-13682182 | Msa0316540:intron | 35.0% | |
| ATTCTTCAAAGGTTACAAGG+AGG | - | chr2_4:13682174-13682193 | Msa0316540:intron | 35.0% | |
| TTCTTCAAAGGTTACAAGGA+GGG | - | chr2_4:13682175-13682194 | Msa0316540:intron | 35.0% | |
| AGATGCTCAAGCTAAAAGAT+TGG | - | chr2_4:13682224-13682243 | Msa0316540:intron | 35.0% | |
| AGATCTTCAAACTTGTCAGA+AGG | + | chr2_4:13682253-13682272 | None:intergenic | 35.0% | |
| AACGGATAAACTCATCACAA+TGG | + | chr2_4:13682285-13682304 | None:intergenic | 35.0% | |
| ! | AATCAGGCTTTATGACATGT+GGG | + | chr2_4:13682372-13682391 | None:intergenic | 35.0% |
| ! | AAATCAGGCTTTATGACATG+TGG | + | chr2_4:13682373-13682392 | None:intergenic | 35.0% |
| ACATGTCATAAAGCCTGATT+TGG | - | chr2_4:13682372-13682391 | Msa0316540:intron | 35.0% | |
| CATGTCATAAAGCCTGATTT+GGG | - | chr2_4:13682373-13682392 | Msa0316540:intron | 35.0% | |
| !! | TAAGTTTTTGGACCCAAATC+AGG | + | chr2_4:13682388-13682407 | None:intergenic | 35.0% |
| TATGGAATCAAAGAAGAACG+TGG | - | chr2_4:13682415-13682434 | Msa0316540:CDS | 35.0% | |
| CACAAAACTTCACTGTGATA+TGG | - | chr2_4:13682453-13682472 | Msa0316540:CDS | 35.0% | |
| !! | TTTTGACTCATACAACTGAG+GGG | - | chr2_4:13682594-13682613 | Msa0316540:CDS | 35.0% |
| TCAAGATAATATAGACCCCT+TGG | - | chr2_4:13682697-13682716 | Msa0316540:CDS | 35.0% | |
| TGCTCAAAAGAAACAGAAAC+TGG | - | chr2_4:13682758-13682777 | Msa0316540:intron | 35.0% | |
| TCAAAAGAAACAGAAACTGG+TGG | - | chr2_4:13682761-13682780 | Msa0316540:intron | 35.0% | |
| GGAAACACTCCAAAGAATTT+AGG | - | chr2_4:13682838-13682857 | Msa0316540:intron | 35.0% | |
| ! | TTTTTGTTCTCCAGTTGAAC+AGG | - | chr2_4:13682866-13682885 | Msa0316540:intron | 35.0% |
| AACATTGGTCATGAATAGGA+TGG | + | chr2_4:13682983-13683002 | None:intergenic | 35.0% | |
| TGAGCATAAGAAGAAGCTAA+AGG | - | chr2_4:13683016-13683035 | Msa0316540:intron | 35.0% | |
| AAGAAGCTAAAGGAAGAGTT+TGG | - | chr2_4:13683026-13683045 | Msa0316540:intron | 35.0% | |
| ACTAATTGCATGATGCATTG+AGG | + | chr2_4:13683079-13683098 | None:intergenic | 35.0% | |
| ! | ATGCAGATATGCACATTTTC+TGG | + | chr2_4:13683376-13683395 | None:intergenic | 35.0% |
| CTTCTAATTCTTGTACAGCT+TGG | + | chr2_4:13683613-13683632 | None:intergenic | 35.0% | |
| TTTCATTAGATGCTCATCAC+TGG | - | chr2_4:13683634-13683653 | Msa0316540:CDS | 35.0% | |
| GAATGTGCTCCAAAAGAACT+TGG | - | chr2_4:13681352-13681371 | Msa0316540:intron | 40.0% | |
| TGAAACGCATGCTTCCAAAT+GGG | - | chr2_4:13681404-13681423 | Msa0316540:intron | 40.0% | |
| TAAGGTCACTTGACAATGGA+CGG | + | chr2_4:13681549-13681568 | None:intergenic | 40.0% | |
| !! | TTTCGAAAGCATTGGAGGAA+TGG | - | chr2_4:13681589-13681608 | Msa0316540:intron | 40.0% |
| GATGTTCTTAAACAAGGGAC+AGG | - | chr2_4:13681631-13681650 | Msa0316540:intron | 40.0% | |
| AATGCTCTCCAAGTAACCAT+AGG | + | chr2_4:13681670-13681689 | None:intergenic | 40.0% | |
| ! | AGTAAAAGCCATCGATTGCT+TGG | - | chr2_4:13681735-13681754 | Msa0316540:intron | 40.0% |
| CTTTAAATGTACACGCCTGA+AGG | + | chr2_4:13681972-13681991 | None:intergenic | 40.0% | |
| ! | TCATCCTTTTCAACCATTGC+AGG | - | chr2_4:13682132-13682151 | Msa0316540:intron | 40.0% |
| TCTACCTGCAATGGTTGAAA+AGG | + | chr2_4:13682139-13682158 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGCTTGAGCATCTC+TGG | + | chr2_4:13682223-13682242 | None:intergenic | 40.0% |
| TCTTCAAACTTGTCAGAAGG+TGG | + | chr2_4:13682250-13682269 | None:intergenic | 40.0% | |
| ATAAACTCATCACAATGGCG+CGG | + | chr2_4:13682280-13682299 | None:intergenic | 40.0% | |
| ACTCTTGAAATGGCAAGCAA+CGG | + | chr2_4:13682303-13682322 | None:intergenic | 40.0% | |
| GGATCGCTATACTCTTGAAA+TGG | + | chr2_4:13682313-13682332 | None:intergenic | 40.0% | |
| ! | ATCAGGCTTTATGACATGTG+GGG | + | chr2_4:13682371-13682390 | None:intergenic | 40.0% |
| ATCAAAGAAGAACGTGGAAG+AGG | - | chr2_4:13682421-13682440 | Msa0316540:CDS | 40.0% | |
| TCACTGTGATATGGAAGATG+CGG | - | chr2_4:13682462-13682481 | Msa0316540:CDS | 40.0% | |
| ATAGACCCCTTGGAGATTAA+TGG | - | chr2_4:13682707-13682726 | Msa0316540:intron | 40.0% | |
| !! | CTGTTTCTTTTGAGCACACT+TGG | + | chr2_4:13682754-13682773 | None:intergenic | 40.0% |
| !! | CTTTGGGACATATTCAGAAG+AGG | - | chr2_4:13682788-13682807 | Msa0316540:intron | 40.0% |
| AGTCCCACTAACTTCTTTGT+TGG | - | chr2_4:13682944-13682963 | Msa0316540:intron | 40.0% | |
| TCAATTACAGGTGTAGAACC+TGG | - | chr2_4:13683123-13683142 | Msa0316540:CDS | 40.0% | |
| AAGTTTCTGCTCAAATGTCC+AGG | + | chr2_4:13683144-13683163 | None:intergenic | 40.0% | |
| TGGACATTTGAGCAGAAACT+TGG | - | chr2_4:13683143-13683162 | Msa0316540:CDS | 40.0% | |
| GAAGCAGTATATATTCCTGC+TGG | - | chr2_4:13683167-13683186 | Msa0316540:CDS | 40.0% | |
| !! | TTGAGATTTCTGACTTGGTG+TGG | + | chr2_4:13683197-13683216 | None:intergenic | 40.0% |
| ACACCAAGTCAGAAATCTCA+AGG | - | chr2_4:13683196-13683215 | Msa0316540:CDS | 40.0% | |
| TGACCTTGAGATTTCTGACT+TGG | + | chr2_4:13683202-13683221 | None:intergenic | 40.0% | |
| ACACCTTCCAAAGAATCACA+AGG | - | chr2_4:13683417-13683436 | Msa0316540:CDS | 40.0% | |
| TTGCCTTGTGATTCTTTGGA+AGG | + | chr2_4:13683423-13683442 | None:intergenic | 40.0% | |
| TCTCTTGCCTTGTGATTCTT+TGG | + | chr2_4:13683427-13683446 | None:intergenic | 40.0% | |
| GAATGTGCTCCAAAAGAACT+TGG | - | chr2_4:13681352-13681371 | Msa0316540:intron | 40.0% | |
| TGAAACGCATGCTTCCAAAT+GGG | - | chr2_4:13681404-13681423 | Msa0316540:intron | 40.0% | |
| TAAGGTCACTTGACAATGGA+CGG | + | chr2_4:13681549-13681568 | None:intergenic | 40.0% | |
| !! | TTTCGAAAGCATTGGAGGAA+TGG | - | chr2_4:13681589-13681608 | Msa0316540:intron | 40.0% |
| GATGTTCTTAAACAAGGGAC+AGG | - | chr2_4:13681631-13681650 | Msa0316540:intron | 40.0% | |
| AATGCTCTCCAAGTAACCAT+AGG | + | chr2_4:13681670-13681689 | None:intergenic | 40.0% | |
| ! | AGTAAAAGCCATCGATTGCT+TGG | - | chr2_4:13681735-13681754 | Msa0316540:intron | 40.0% |
| CTTTAAATGTACACGCCTGA+AGG | + | chr2_4:13681972-13681991 | None:intergenic | 40.0% | |
| ! | TCATCCTTTTCAACCATTGC+AGG | - | chr2_4:13682132-13682151 | Msa0316540:intron | 40.0% |
| TCTACCTGCAATGGTTGAAA+AGG | + | chr2_4:13682139-13682158 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGCTTGAGCATCTC+TGG | + | chr2_4:13682223-13682242 | None:intergenic | 40.0% |
| TCTTCAAACTTGTCAGAAGG+TGG | + | chr2_4:13682250-13682269 | None:intergenic | 40.0% | |
| ATAAACTCATCACAATGGCG+CGG | + | chr2_4:13682280-13682299 | None:intergenic | 40.0% | |
| ACTCTTGAAATGGCAAGCAA+CGG | + | chr2_4:13682303-13682322 | None:intergenic | 40.0% | |
| GGATCGCTATACTCTTGAAA+TGG | + | chr2_4:13682313-13682332 | None:intergenic | 40.0% | |
| ! | ATCAGGCTTTATGACATGTG+GGG | + | chr2_4:13682371-13682390 | None:intergenic | 40.0% |
| ATCAAAGAAGAACGTGGAAG+AGG | - | chr2_4:13682421-13682440 | Msa0316540:CDS | 40.0% | |
| TCACTGTGATATGGAAGATG+CGG | - | chr2_4:13682462-13682481 | Msa0316540:CDS | 40.0% | |
| ATAGACCCCTTGGAGATTAA+TGG | - | chr2_4:13682707-13682726 | Msa0316540:intron | 40.0% | |
| !! | CTGTTTCTTTTGAGCACACT+TGG | + | chr2_4:13682754-13682773 | None:intergenic | 40.0% |
| !! | CTTTGGGACATATTCAGAAG+AGG | - | chr2_4:13682788-13682807 | Msa0316540:intron | 40.0% |
| AGTCCCACTAACTTCTTTGT+TGG | - | chr2_4:13682944-13682963 | Msa0316540:intron | 40.0% | |
| TCAATTACAGGTGTAGAACC+TGG | - | chr2_4:13683123-13683142 | Msa0316540:CDS | 40.0% | |
| AAGTTTCTGCTCAAATGTCC+AGG | + | chr2_4:13683144-13683163 | None:intergenic | 40.0% | |
| TGGACATTTGAGCAGAAACT+TGG | - | chr2_4:13683143-13683162 | Msa0316540:CDS | 40.0% | |
| GAAGCAGTATATATTCCTGC+TGG | - | chr2_4:13683167-13683186 | Msa0316540:CDS | 40.0% | |
| !! | TTGAGATTTCTGACTTGGTG+TGG | + | chr2_4:13683197-13683216 | None:intergenic | 40.0% |
| ACACCAAGTCAGAAATCTCA+AGG | - | chr2_4:13683196-13683215 | Msa0316540:CDS | 40.0% | |
| TGACCTTGAGATTTCTGACT+TGG | + | chr2_4:13683202-13683221 | None:intergenic | 40.0% | |
| ACACCTTCCAAAGAATCACA+AGG | - | chr2_4:13683417-13683436 | Msa0316540:CDS | 40.0% | |
| TTGCCTTGTGATTCTTTGGA+AGG | + | chr2_4:13683423-13683442 | None:intergenic | 40.0% | |
| TCTCTTGCCTTGTGATTCTT+TGG | + | chr2_4:13683427-13683446 | None:intergenic | 40.0% | |
| TGTGCTCCAAAAGAACTTGG+AGG | - | chr2_4:13681355-13681374 | Msa0316540:intron | 45.0% | |
| ! | CCACAACCTCCAAGTTCTTT+TGG | + | chr2_4:13681364-13681383 | None:intergenic | 45.0% |
| CCAAAAGAACTTGGAGGTTG+TGG | - | chr2_4:13681361-13681380 | Msa0316540:intron | 45.0% | |
| TTGTGGCTGTGGTTGTGTTA+TGG | - | chr2_4:13681378-13681397 | Msa0316540:intron | 45.0% | |
| CTGAAACGCATGCTTCCAAA+TGG | - | chr2_4:13681403-13681422 | Msa0316540:intron | 45.0% | |
| AACAAGGGACAGGTTTGAGT+TGG | - | chr2_4:13681641-13681660 | Msa0316540:intron | 45.0% | |
| ! | ACAAGGGACAGGTTTGAGTT+GGG | - | chr2_4:13681642-13681661 | Msa0316540:intron | 45.0% |
| !! | GAGAGCATTGTGCGCAAATT+TGG | - | chr2_4:13681681-13681700 | Msa0316540:CDS | 45.0% |
| ! | TTGTGCGCAAATTTGGCTTC+AGG | - | chr2_4:13681688-13681707 | Msa0316540:CDS | 45.0% |
| ACAACTAGCCAAGCAATCGA+TGG | + | chr2_4:13681746-13681765 | None:intergenic | 45.0% | |
| TGAGGCCTACAACAAATTGG+AGG | - | chr2_4:13681864-13681883 | Msa0316540:CDS | 45.0% | |
| ! | TCAGGCTTTATGACATGTGG+GGG | + | chr2_4:13682370-13682389 | None:intergenic | 45.0% |
| TAAGGCTCAAGATCGGAAAG+AGG | - | chr2_4:13682667-13682686 | Msa0316540:CDS | 45.0% | |
| AAGGCTCAAGATCGGAAAGA+GGG | - | chr2_4:13682668-13682687 | Msa0316540:CDS | 45.0% | |
| ! | AGAAACTGGTGGTGCTCTTT+GGG | - | chr2_4:13682772-13682791 | Msa0316540:intron | 45.0% |
| !! | TGGAAGGTGTCGAAACTCTT+CGG | + | chr2_4:13683407-13683426 | None:intergenic | 45.0% |
| GGCAAGAGAAGACAAACTTG+AGG | - | chr2_4:13683438-13683457 | Msa0316540:CDS | 45.0% | |
| TGTGCTCCAAAAGAACTTGG+AGG | - | chr2_4:13681355-13681374 | Msa0316540:intron | 45.0% | |
| ! | CCACAACCTCCAAGTTCTTT+TGG | + | chr2_4:13681364-13681383 | None:intergenic | 45.0% |
| CCAAAAGAACTTGGAGGTTG+TGG | - | chr2_4:13681361-13681380 | Msa0316540:intron | 45.0% | |
| TTGTGGCTGTGGTTGTGTTA+TGG | - | chr2_4:13681378-13681397 | Msa0316540:intron | 45.0% | |
| CTGAAACGCATGCTTCCAAA+TGG | - | chr2_4:13681403-13681422 | Msa0316540:intron | 45.0% | |
| AACAAGGGACAGGTTTGAGT+TGG | - | chr2_4:13681641-13681660 | Msa0316540:intron | 45.0% | |
| ! | ACAAGGGACAGGTTTGAGTT+GGG | - | chr2_4:13681642-13681661 | Msa0316540:intron | 45.0% |
| !! | GAGAGCATTGTGCGCAAATT+TGG | - | chr2_4:13681681-13681700 | Msa0316540:CDS | 45.0% |
| ! | TTGTGCGCAAATTTGGCTTC+AGG | - | chr2_4:13681688-13681707 | Msa0316540:CDS | 45.0% |
| ACAACTAGCCAAGCAATCGA+TGG | + | chr2_4:13681746-13681765 | None:intergenic | 45.0% | |
| TGAGGCCTACAACAAATTGG+AGG | - | chr2_4:13681864-13681883 | Msa0316540:CDS | 45.0% | |
| ! | TCAGGCTTTATGACATGTGG+GGG | + | chr2_4:13682370-13682389 | None:intergenic | 45.0% |
| TAAGGCTCAAGATCGGAAAG+AGG | - | chr2_4:13682667-13682686 | Msa0316540:CDS | 45.0% | |
| AAGGCTCAAGATCGGAAAGA+GGG | - | chr2_4:13682668-13682687 | Msa0316540:CDS | 45.0% | |
| ! | AGAAACTGGTGGTGCTCTTT+GGG | - | chr2_4:13682772-13682791 | Msa0316540:intron | 45.0% |
| !! | TGGAAGGTGTCGAAACTCTT+CGG | + | chr2_4:13683407-13683426 | None:intergenic | 45.0% |
| GGCAAGAGAAGACAAACTTG+AGG | - | chr2_4:13683438-13683457 | Msa0316540:CDS | 45.0% | |
| !! | AGGTTTGAGTTGGGAGCCTA+TGG | - | chr2_4:13681651-13681670 | Msa0316540:intron | 50.0% |
| GTTGGGAGCCTATGGTTACT+TGG | - | chr2_4:13681659-13681678 | Msa0316540:CDS | 50.0% | |
| ! | CGATTGCTTGGCTAGTTGTG+AGG | - | chr2_4:13681747-13681766 | Msa0316540:intron | 50.0% |
| GCAACTTTGCAGCAAGGTTG+AGG | + | chr2_4:13682348-13682367 | None:intergenic | 50.0% | |
| GGGCACATAAGGCTCAAGAT+CGG | - | chr2_4:13682660-13682679 | Msa0316540:CDS | 50.0% | |
| ! | CAGAAACTGGTGGTGCTCTT+TGG | - | chr2_4:13682771-13682790 | Msa0316540:intron | 50.0% |
| !! | AGGTTTGAGTTGGGAGCCTA+TGG | - | chr2_4:13681651-13681670 | Msa0316540:intron | 50.0% |
| GTTGGGAGCCTATGGTTACT+TGG | - | chr2_4:13681659-13681678 | Msa0316540:CDS | 50.0% | |
| ! | CGATTGCTTGGCTAGTTGTG+AGG | - | chr2_4:13681747-13681766 | Msa0316540:intron | 50.0% |
| GCAACTTTGCAGCAAGGTTG+AGG | + | chr2_4:13682348-13682367 | None:intergenic | 50.0% | |
| GGGCACATAAGGCTCAAGAT+CGG | - | chr2_4:13682660-13682679 | Msa0316540:CDS | 50.0% | |
| ! | CAGAAACTGGTGGTGCTCTT+TGG | - | chr2_4:13682771-13682790 | Msa0316540:intron | 50.0% |
| GAACTTGGAGGTTGTGGCTG+TGG | - | chr2_4:13681367-13681386 | Msa0316540:intron | 55.0% | |
| GAGTATAGCGATCCTCGAGC+TGG | - | chr2_4:13682319-13682338 | Msa0316540:intron | 55.0% | |
| AGGTTGAGGATTCCAGCTCG+AGG | + | chr2_4:13682334-13682353 | None:intergenic | 55.0% | |
| !! | ACTTGGTGTGGACATCCAGC+AGG | + | chr2_4:13683185-13683204 | None:intergenic | 55.0% |
| GAACTTGGAGGTTGTGGCTG+TGG | - | chr2_4:13681367-13681386 | Msa0316540:intron | 55.0% | |
| GAGTATAGCGATCCTCGAGC+TGG | - | chr2_4:13682319-13682338 | Msa0316540:intron | 55.0% | |
| AGGTTGAGGATTCCAGCTCG+AGG | + | chr2_4:13682334-13682353 | None:intergenic | 55.0% | |
| !! | ACTTGGTGTGGACATCCAGC+AGG | + | chr2_4:13683185-13683204 | None:intergenic | 55.0% |
| GTGGGGGCAACTTTGCAGCA+AGG | + | chr2_4:13682354-13682373 | None:intergenic | 60.0% | |
| GTGGGGGCAACTTTGCAGCA+AGG | + | chr2_4:13682354-13682373 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13681214 | 13683661 | 13681214 | ID=Msa0316540;Name=Msa0316540 |
| chr2_4 | mRNA | 13681214 | 13683661 | 13681214 | ID=Msa0316540-mRNA-1;Parent=Msa0316540;Name=Msa0316540-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|8|0|476 |
| chr2_4 | exon | 13683107 | 13683661 | 13683107 | ID=Msa0316540-mRNA-1:exon:5228;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13682392 | 13682721 | 13682392 | ID=Msa0316540-mRNA-1:exon:5227;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13682235 | 13682288 | 13682235 | ID=Msa0316540-mRNA-1:exon:5226;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13681988 | 13682125 | 13681988 | ID=Msa0316540-mRNA-1:exon:5225;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13681833 | 13681900 | 13681833 | ID=Msa0316540-mRNA-1:exon:5224;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13681658 | 13681742 | 13681658 | ID=Msa0316540-mRNA-1:exon:5223;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13681416 | 13681535 | 13681416 | ID=Msa0316540-mRNA-1:exon:5222;Parent=Msa0316540-mRNA-1 |
| chr2_4 | exon | 13681214 | 13681294 | 13681214 | ID=Msa0316540-mRNA-1:exon:5221;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13683107 | 13683661 | 13683107 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13682392 | 13682721 | 13682392 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13682235 | 13682288 | 13682235 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13681988 | 13682125 | 13681988 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13681833 | 13681900 | 13681833 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13681658 | 13681742 | 13681658 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13681416 | 13681535 | 13681416 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| chr2_4 | CDS | 13681214 | 13681294 | 13681214 | ID=Msa0316540-mRNA-1:cds;Parent=Msa0316540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
