Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316880 | KAG5049782.1 | 42.182 | 550 | 153 | 10 | 1 | 406 | 1 | 529 | 3.65e-128 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316880 | sp|Q9SWG3|FAR1_ARATH | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.20e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0316880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316880 | MtrunA17_Chr3g0118611 | 35.938 | 128 | 69 | 2 | 154 | 271 | 288 | 412 | 4.83e-18 | 86.3 |
| Msa0316880 | MtrunA17_Chr5g0440451 | 35.156 | 128 | 70 | 2 | 154 | 271 | 391 | 515 | 7.46e-18 | 85.9 |
| Msa0316880 | MtrunA17_Chr1g0207551 | 34.286 | 140 | 80 | 3 | 151 | 279 | 372 | 510 | 1.92e-17 | 84.7 |
| Msa0316880 | MtrunA17_Chr1g0196541 | 36.567 | 134 | 74 | 3 | 148 | 271 | 329 | 461 | 1.45e-16 | 82.0 |
| Msa0316880 | MtrunA17_Chr1g0202341 | 35.878 | 131 | 73 | 2 | 151 | 271 | 391 | 520 | 1.50e-16 | 81.6 |
| Msa0316880 | MtrunA17_Chr6g0477261 | 33.333 | 162 | 92 | 5 | 151 | 297 | 221 | 381 | 3.14e-15 | 77.8 |
| Msa0316880 | MtrunA17_Chr2g0296781 | 32.075 | 159 | 91 | 5 | 137 | 279 | 316 | 473 | 6.51e-15 | 76.6 |
| Msa0316880 | MtrunA17_Chr5g0448761 | 32.031 | 128 | 76 | 2 | 154 | 271 | 410 | 536 | 2.52e-14 | 75.1 |
| Msa0316880 | MtrunA17_Chr2g0329031 | 32.857 | 140 | 82 | 3 | 151 | 279 | 345 | 483 | 2.58e-14 | 75.1 |
| Msa0316880 | MtrunA17_Chr2g0287061 | 33.333 | 132 | 74 | 2 | 151 | 272 | 485 | 612 | 1.32e-13 | 72.8 |
| Msa0316880 | MtrunA17_Chr5g0448511 | 31.373 | 153 | 91 | 4 | 151 | 290 | 179 | 330 | 1.57e-13 | 72.0 |
| Msa0316880 | MtrunA17_Chr5g0441581 | 30.496 | 141 | 81 | 3 | 151 | 275 | 360 | 499 | 1.78e-12 | 69.3 |
| Msa0316880 | MtrunA17_Chr1g0203051 | 32.374 | 139 | 76 | 6 | 160 | 281 | 424 | 561 | 3.29e-12 | 68.2 |
| Msa0316880 | MtrunA17_Chr8g0363841 | 31.496 | 127 | 75 | 3 | 155 | 270 | 361 | 486 | 6.63e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316880 | AT4G15090.1 | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.30e-17 | 83.6 |
| Msa0316880 | AT4G15090.5 | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.30e-17 | 83.6 |
| Msa0316880 | AT4G15090.3 | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.30e-17 | 83.6 |
| Msa0316880 | AT4G15090.2 | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.30e-17 | 83.6 |
| Msa0316880 | AT4G15090.4 | 33.333 | 147 | 86 | 3 | 144 | 279 | 385 | 530 | 6.30e-17 | 83.6 |
| Msa0316880 | AT4G38180.1 | 35.938 | 128 | 71 | 2 | 154 | 271 | 419 | 545 | 6.78e-17 | 83.2 |
| Msa0316880 | AT2G27110.3 | 30.612 | 147 | 86 | 3 | 154 | 287 | 221 | 364 | 1.84e-16 | 82.0 |
| Msa0316880 | AT2G27110.2 | 30.612 | 147 | 86 | 3 | 154 | 287 | 366 | 509 | 1.86e-16 | 82.0 |
| Msa0316880 | AT2G27110.1 | 30.612 | 147 | 86 | 3 | 154 | 287 | 366 | 509 | 1.86e-16 | 82.0 |
| Msa0316880 | AT4G38170.1 | 32.824 | 131 | 77 | 2 | 151 | 271 | 181 | 310 | 1.01e-15 | 79.3 |
| Msa0316880 | AT1G76320.3 | 32.857 | 140 | 82 | 3 | 151 | 279 | 329 | 467 | 3.67e-13 | 71.6 |
| Msa0316880 | AT1G76320.1 | 32.857 | 140 | 82 | 3 | 151 | 279 | 329 | 467 | 3.92e-13 | 71.6 |
| Msa0316880 | AT1G76320.4 | 32.857 | 140 | 82 | 3 | 151 | 279 | 329 | 467 | 3.92e-13 | 71.6 |
| Msa0316880 | AT1G76320.2 | 32.857 | 140 | 82 | 3 | 151 | 279 | 329 | 467 | 4.51e-13 | 71.6 |
| Msa0316880 | AT4G19990.1 | 31.373 | 153 | 92 | 3 | 151 | 291 | 283 | 434 | 6.96e-12 | 67.8 |
| Msa0316880 | AT4G19990.5 | 31.373 | 153 | 92 | 3 | 151 | 291 | 340 | 491 | 7.16e-12 | 67.8 |
| Msa0316880 | AT4G19990.3 | 31.373 | 153 | 92 | 3 | 151 | 291 | 340 | 491 | 7.23e-12 | 67.8 |
| Msa0316880 | AT4G19990.4 | 31.373 | 153 | 92 | 3 | 151 | 291 | 340 | 491 | 7.23e-12 | 67.8 |
| Msa0316880 | AT4G19990.6 | 31.373 | 153 | 92 | 3 | 151 | 291 | 340 | 491 | 7.39e-12 | 67.8 |
| Msa0316880 | AT4G19990.2 | 31.373 | 153 | 92 | 3 | 151 | 291 | 340 | 491 | 7.39e-12 | 67.8 |
| Msa0316880 | AT4G19990.7 | 31.373 | 153 | 92 | 3 | 151 | 291 | 354 | 505 | 7.97e-12 | 67.8 |
| Msa0316880 | AT3G22170.2 | 27.778 | 144 | 92 | 3 | 151 | 283 | 401 | 543 | 8.97e-11 | 64.3 |
| Msa0316880 | AT3G22170.1 | 27.778 | 144 | 92 | 3 | 151 | 283 | 401 | 543 | 8.97e-11 | 64.3 |
Find 62 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAACTTTAGTGGAATTA+TGG | 0.159994 | 2_4:+14180756 | Msa0316880:CDS |
| ATACCAAAGGTTGTGGAAAA+TGG | 0.230638 | 2_4:+14181484 | Msa0316880:CDS |
| GAGAGTGAAAATTCATTCTT+TGG | 0.232930 | 2_4:+14180716 | Msa0316880:CDS |
| TCCATGTGCATCTTCAATTC+TGG | 0.263176 | 2_4:-14180854 | None:intergenic |
| AAAAGCCTCCAATTCATCTA+AGG | 0.298986 | 2_4:-14181409 | None:intergenic |
| CTTAACTTTAGTGGAATTAT+GGG | 0.314223 | 2_4:+14180757 | Msa0316880:CDS |
| ATCAAGACCCTTAGATGAAT+TGG | 0.321859 | 2_4:+14181401 | Msa0316880:CDS |
| TTACACTTCTTGCTGATCTT+AGG | 0.324217 | 2_4:-14179848 | None:intergenic |
| CCCCACATTAGCTCTATTGC+AGG | 0.343784 | 2_4:-14179898 | None:intergenic |
| GAATCCGAACTTAACTTTAG+TGG | 0.377610 | 2_4:+14180748 | Msa0316880:CDS |
| CCACAACCTTTGGTATTTGA+AGG | 0.394670 | 2_4:-14181477 | None:intergenic |
| GTCCTCGGAAGAATTTGAAT+TGG | 0.403736 | 2_4:+14180553 | Msa0316880:CDS |
| CTTAGGAATTGTCTCTTTGA+AGG | 0.411091 | 2_4:-14179831 | None:intergenic |
| CCTTTGGTATTTGAAGGTTC+AGG | 0.415587 | 2_4:-14181471 | None:intergenic |
| GATTACAGCTTGGAAGGAAA+TGG | 0.422247 | 2_4:+14180596 | Msa0316880:CDS |
| CGGAAGAATTTGAATTGGAA+TGG | 0.439280 | 2_4:+14180558 | Msa0316880:CDS |
| TGGGACAATTGCGACTATCA+TGG | 0.441276 | 2_4:-14181587 | None:intergenic |
| AATTCCACTAAAGTTAAGTT+CGG | 0.441463 | 2_4:-14180752 | None:intergenic |
| ATCGTTTCAAGTCATATGTC+TGG | 0.445896 | 2_4:+14180522 | Msa0316880:intron |
| AAAGCTTATGCTTATGTCGC+TGG | 0.447210 | 2_4:+14179546 | Msa0316880:CDS |
| AAAGAGAACGAGACTTTGTA+AGG | 0.447444 | 2_4:+14181545 | Msa0316880:CDS |
| AAGATAAAGATGGTGTCAAA+TGG | 0.458986 | 2_4:+14179598 | Msa0316880:CDS |
| TTTAAAGATACATTTATGGC+TGG | 0.464871 | 2_4:+14180668 | Msa0316880:CDS |
| GTTGTGGAAAATGGATCAAA+GGG | 0.490616 | 2_4:+14181493 | Msa0316880:CDS |
| CCTTCAAATACCAAAGGTTG+TGG | 0.497729 | 2_4:+14181477 | Msa0316880:CDS |
| ATTAGTGATTACAGCTTGGA+AGG | 0.499656 | 2_4:+14180590 | Msa0316880:CDS |
| TACATATTCAAAAGGAGTTG+TGG | 0.503456 | 2_4:+14180920 | Msa0316880:CDS |
| AAGACCCTTAGATGAATTGG+AGG | 0.518183 | 2_4:+14181404 | Msa0316880:CDS |
| TTCCTGCAATAGAGCTAATG+TGG | 0.525972 | 2_4:+14179896 | Msa0316880:CDS |
| AATGTATCTTTAAAATAAGC+CGG | 0.531771 | 2_4:-14180659 | None:intergenic |
| TCTAAGAAGCATGTGGATAC+CGG | 0.532104 | 2_4:+14180640 | Msa0316880:CDS |
| AAAAGAAAATTGACACGGGA+GGG | 0.544160 | 2_4:+14179717 | Msa0316880:CDS |
| TACAACCCTCGTCGTAAATG+AGG | 0.550825 | 2_4:-14181338 | None:intergenic |
| ATTGTTGAAATGCATGCATA+TGG | 0.551167 | 2_4:+14181290 | Msa0316880:CDS |
| TCTTACCAAAAGCTATGAAG+AGG | 0.552062 | 2_4:-14181616 | None:intergenic |
| TTACCGTCTTTCGACGGTGA+GGG | 0.553668 | 2_4:-14179417 | None:intergenic |
| TATTATTAGTGATTACAGCT+TGG | 0.557012 | 2_4:+14180586 | Msa0316880:CDS |
| TTATCAAATAATGAAGGAGC+AGG | 0.557665 | 2_4:+14179932 | Msa0316880:CDS |
| AAAGCCTCCAATTCATCTAA+GGG | 0.562759 | 2_4:-14181408 | None:intergenic |
| TTTAGAGAAGCACGCTAGAG+AGG | 0.563012 | 2_4:+14180877 | Msa0316880:CDS |
| TCCTGCAATAGAGCTAATGT+GGG | 0.569539 | 2_4:+14179897 | Msa0316880:CDS |
| GGATCATTACCGTCTTTCGA+CGG | 0.572187 | 2_4:-14179423 | None:intergenic |
| ACTAAAACGAAAGATAAAGA+TGG | 0.581643 | 2_4:+14179588 | Msa0316880:CDS |
| TTCCAATTCAAATTCTTCCG+AGG | 0.582813 | 2_4:-14180555 | None:intergenic |
| TTACCCTCACCGTCGAAAGA+CGG | 0.582992 | 2_4:+14179414 | Msa0316880:CDS |
| GGTTGTGGAAAATGGATCAA+AGG | 0.583226 | 2_4:+14181492 | Msa0316880:CDS |
| TTGAAATGCATGCATATGGC+TGG | 0.592286 | 2_4:+14181294 | Msa0316880:CDS |
| TGTCTGGAACTCAGAGTCCT+CGG | 0.596015 | 2_4:+14180538 | Msa0316880:CDS |
| GGGACAATTGCGACTATCAT+GGG | 0.600073 | 2_4:-14181586 | None:intergenic |
| TTGGTATTTGAAGGTTCAGG+TGG | 0.606194 | 2_4:-14181468 | None:intergenic |
| TTGCTCCTCATTTACGACGA+GGG | 0.621088 | 2_4:+14181333 | Msa0316880:CDS |
| TGTGGAAAATGGATCAAAGG+GGG | 0.623437 | 2_4:+14181495 | Msa0316880:CDS |
| ACAGCTTGGAAGGAAATGGA+TGG | 0.637153 | 2_4:+14180600 | Msa0316880:CDS |
| TTTATGAAGGTCATTCACAT+GGG | 0.643134 | 2_4:+14179799 | Msa0316880:intron |
| TCCAGAATTGAAGATGCACA+TGG | 0.647030 | 2_4:+14180853 | Msa0316880:CDS |
| ATTACCGTCTTTCGACGGTG+AGG | 0.651913 | 2_4:-14179418 | None:intergenic |
| GTGGAAAATGGATCAAAGGG+GGG | 0.653152 | 2_4:+14181496 | Msa0316880:CDS |
| CCTGAACCTTCAAATACCAA+AGG | 0.662219 | 2_4:+14181471 | Msa0316880:CDS |
| ATTGCTCCTCATTTACGACG+AGG | 0.704041 | 2_4:+14181332 | Msa0316880:CDS |
| TTGTGGAAAATGGATCAAAG+GGG | 0.711954 | 2_4:+14181494 | Msa0316880:CDS |
| CCTGCAATAGAGCTAATGTG+GGG | 0.712461 | 2_4:+14179898 | Msa0316880:CDS |
| TGTATGATCTAAGAAGCATG+TGG | 0.717264 | 2_4:+14180633 | Msa0316880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAAAGATACATTTA+TGG | + | chr2_4:14180664-14180683 | Msa0316880:CDS | 10.0% |
| !!! | TTATTTTAAAGATACATTTA+TGG | + | chr2_4:14180664-14180683 | Msa0316880:CDS | 10.0% |
| !! | AAAAAGTTATCAAATAATGA+AGG | + | chr2_4:14179926-14179945 | Msa0316880:CDS | 15.0% |
| !!! | TTGATAATTTTAGAAGAAAA+CGG | + | chr2_4:14180054-14180073 | Msa0316880:intron | 15.0% |
| !!! | AAAACTTTTACATATTCAAA+AGG | + | chr2_4:14180912-14180931 | Msa0316880:CDS | 15.0% |
| !!! | ACATATTCTTTTTGTATTAA+AGG | + | chr2_4:14181113-14181132 | Msa0316880:intron | 15.0% |
| !!! | CATATTCTTTTTGTATTAAA+GGG | + | chr2_4:14181114-14181133 | Msa0316880:intron | 15.0% |
| !!! | ATATTCTTTTTGTATTAAAG+GGG | + | chr2_4:14181115-14181134 | Msa0316880:intron | 15.0% |
| !! | AAAAAGTTATCAAATAATGA+AGG | + | chr2_4:14179926-14179945 | Msa0316880:CDS | 15.0% |
| !!! | TTGATAATTTTAGAAGAAAA+CGG | + | chr2_4:14180054-14180073 | Msa0316880:intron | 15.0% |
| !!! | AAAACTTTTACATATTCAAA+AGG | + | chr2_4:14180912-14180931 | Msa0316880:CDS | 15.0% |
| !!! | ACATATTCTTTTTGTATTAA+AGG | + | chr2_4:14181113-14181132 | Msa0316880:intron | 15.0% |
| !!! | CATATTCTTTTTGTATTAAA+GGG | + | chr2_4:14181114-14181133 | Msa0316880:intron | 15.0% |
| !!! | ATATTCTTTTTGTATTAAAG+GGG | + | chr2_4:14181115-14181134 | Msa0316880:intron | 15.0% |
| !!! | TGATAATTTTAGAAGAAAAC+GGG | + | chr2_4:14180055-14180074 | Msa0316880:intron | 20.0% |
| !! | CAAAAAAATTACTCTTTGTT+TGG | + | chr2_4:14180161-14180180 | Msa0316880:intron | 20.0% |
| !! | TCTAAAAAAACTTTCAGAAA+AGG | + | chr2_4:14180463-14180482 | Msa0316880:intron | 20.0% |
| !!! | AATGTATCTTTAAAATAAGC+CGG | - | chr2_4:14180662-14180681 | None:intergenic | 20.0% |
| !! | AACATTATCAAGTATAGAAA+AGG | - | chr2_4:14181001-14181020 | None:intergenic | 20.0% |
| !!! | TGATAATTTTAGAAGAAAAC+GGG | + | chr2_4:14180055-14180074 | Msa0316880:intron | 20.0% |
| !! | CAAAAAAATTACTCTTTGTT+TGG | + | chr2_4:14180161-14180180 | Msa0316880:intron | 20.0% |
| !! | TCTAAAAAAACTTTCAGAAA+AGG | + | chr2_4:14180463-14180482 | Msa0316880:intron | 20.0% |
| !!! | AATGTATCTTTAAAATAAGC+CGG | - | chr2_4:14180662-14180681 | None:intergenic | 20.0% |
| !! | AACATTATCAAGTATAGAAA+AGG | - | chr2_4:14181001-14181020 | None:intergenic | 20.0% |
| !! | GTATTTGATACTTTAGAAGA+AGG | + | chr2_4:14179510-14179529 | Msa0316880:intron | 25.0% |
| ! | ACTAAAACGAAAGATAAAGA+TGG | + | chr2_4:14179588-14179607 | Msa0316880:CDS | 25.0% |
| !! | ATATTTTCTTTGCTCAAAAG+AGG | + | chr2_4:14179623-14179642 | Msa0316880:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+GGG | + | chr2_4:14179624-14179643 | Msa0316880:CDS | 25.0% |
| ! | GTAGAAAAAGAAAATTGACA+CGG | + | chr2_4:14179712-14179731 | Msa0316880:CDS | 25.0% |
| ! | TAGAAAAAGAAAATTGACAC+GGG | + | chr2_4:14179713-14179732 | Msa0316880:CDS | 25.0% |
| !! | GAAGTCTCAAAATTTTATGA+AGG | + | chr2_4:14179786-14179805 | Msa0316880:intron | 25.0% |
| ! | ACATAATCATAGAAGAATGA+AGG | - | chr2_4:14180089-14180108 | None:intergenic | 25.0% |
| ! | TCATAAAATACTTGTTTGTG+CGG | - | chr2_4:14180214-14180233 | None:intergenic | 25.0% |
| ! | TGATCTGTTATTATCATAAC+AGG | - | chr2_4:14180371-14180390 | None:intergenic | 25.0% |
| ! | ATGATAATAACAGATCAAGA+TGG | + | chr2_4:14180374-14180393 | Msa0316880:intron | 25.0% |
| ! | TGATAATAACAGATCAAGAT+GGG | + | chr2_4:14180375-14180394 | Msa0316880:intron | 25.0% |
| ! | AAAAAAACTTTCAGAAAAGG+TGG | + | chr2_4:14180466-14180485 | Msa0316880:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | + | chr2_4:14180467-14180486 | Msa0316880:intron | 25.0% |
| ! | TATTATTAGTGATTACAGCT+TGG | + | chr2_4:14180586-14180605 | Msa0316880:CDS | 25.0% |
| ! | TTTAAAGATACATTTATGGC+TGG | + | chr2_4:14180668-14180687 | Msa0316880:CDS | 25.0% |
| ! | AATTCCACTAAAGTTAAGTT+CGG | - | chr2_4:14180755-14180774 | None:intergenic | 25.0% |
| ! | ACTTAACTTTAGTGGAATTA+TGG | + | chr2_4:14180756-14180775 | Msa0316880:CDS | 25.0% |
| ! | CTTAACTTTAGTGGAATTAT+GGG | + | chr2_4:14180757-14180776 | Msa0316880:CDS | 25.0% |
| ! | CAAAAAGAATATGTCAACAT+GGG | - | chr2_4:14181107-14181126 | None:intergenic | 25.0% |
| ! | ACAAAAAGAATATGTCAACA+TGG | - | chr2_4:14181108-14181127 | None:intergenic | 25.0% |
| !!! | AAACCAATTTTTGATTGTGA+TGG | + | chr2_4:14181201-14181220 | Msa0316880:intron | 25.0% |
| ! | TTTCCATCACAATCAAAAAT+TGG | - | chr2_4:14181207-14181226 | None:intergenic | 25.0% |
| !!! | TTCAATTGTTTTAGCTACAT+TGG | - | chr2_4:14181442-14181461 | None:intergenic | 25.0% |
| !! | GTATTTGATACTTTAGAAGA+AGG | + | chr2_4:14179510-14179529 | Msa0316880:intron | 25.0% |
| ! | ACTAAAACGAAAGATAAAGA+TGG | + | chr2_4:14179588-14179607 | Msa0316880:CDS | 25.0% |
| !! | ATATTTTCTTTGCTCAAAAG+AGG | + | chr2_4:14179623-14179642 | Msa0316880:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+GGG | + | chr2_4:14179624-14179643 | Msa0316880:CDS | 25.0% |
| ! | GTAGAAAAAGAAAATTGACA+CGG | + | chr2_4:14179712-14179731 | Msa0316880:CDS | 25.0% |
| ! | TAGAAAAAGAAAATTGACAC+GGG | + | chr2_4:14179713-14179732 | Msa0316880:CDS | 25.0% |
| !! | GAAGTCTCAAAATTTTATGA+AGG | + | chr2_4:14179786-14179805 | Msa0316880:intron | 25.0% |
| ! | ACATAATCATAGAAGAATGA+AGG | - | chr2_4:14180089-14180108 | None:intergenic | 25.0% |
| ! | TCATAAAATACTTGTTTGTG+CGG | - | chr2_4:14180214-14180233 | None:intergenic | 25.0% |
| ! | TGATCTGTTATTATCATAAC+AGG | - | chr2_4:14180371-14180390 | None:intergenic | 25.0% |
| ! | ATGATAATAACAGATCAAGA+TGG | + | chr2_4:14180374-14180393 | Msa0316880:intron | 25.0% |
| ! | TGATAATAACAGATCAAGAT+GGG | + | chr2_4:14180375-14180394 | Msa0316880:intron | 25.0% |
| ! | AAAAAAACTTTCAGAAAAGG+TGG | + | chr2_4:14180466-14180485 | Msa0316880:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | + | chr2_4:14180467-14180486 | Msa0316880:intron | 25.0% |
| ! | TATTATTAGTGATTACAGCT+TGG | + | chr2_4:14180586-14180605 | Msa0316880:CDS | 25.0% |
| ! | TTTAAAGATACATTTATGGC+TGG | + | chr2_4:14180668-14180687 | Msa0316880:CDS | 25.0% |
| ! | AATTCCACTAAAGTTAAGTT+CGG | - | chr2_4:14180755-14180774 | None:intergenic | 25.0% |
| ! | ACTTAACTTTAGTGGAATTA+TGG | + | chr2_4:14180756-14180775 | Msa0316880:CDS | 25.0% |
| ! | CTTAACTTTAGTGGAATTAT+GGG | + | chr2_4:14180757-14180776 | Msa0316880:CDS | 25.0% |
| ! | CAAAAAGAATATGTCAACAT+GGG | - | chr2_4:14181107-14181126 | None:intergenic | 25.0% |
| ! | ACAAAAAGAATATGTCAACA+TGG | - | chr2_4:14181108-14181127 | None:intergenic | 25.0% |
| !!! | AAACCAATTTTTGATTGTGA+TGG | + | chr2_4:14181201-14181220 | Msa0316880:intron | 25.0% |
| ! | TTTCCATCACAATCAAAAAT+TGG | - | chr2_4:14181207-14181226 | None:intergenic | 25.0% |
| !!! | TTCAATTGTTTTAGCTACAT+TGG | - | chr2_4:14181442-14181461 | None:intergenic | 25.0% |
| ! | TTTGATACTTTAGAAGAAGG+AGG | + | chr2_4:14179513-14179532 | Msa0316880:intron | 30.0% |
| ! | AAGATAAAGATGGTGTCAAA+TGG | + | chr2_4:14179598-14179617 | Msa0316880:CDS | 30.0% |
| !!! | GGGTTTTAAAGAGGAAAAAA+AGG | + | chr2_4:14179644-14179663 | Msa0316880:CDS | 30.0% |
| ! | TTTTCAGCAATAAGCAATTG+TGG | - | chr2_4:14179678-14179697 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGAGAACTATTGA+TGG | + | chr2_4:14179756-14179775 | Msa0316880:CDS | 30.0% |
| ! | TTTTATGAAGGTCATTCACA+TGG | + | chr2_4:14179798-14179817 | Msa0316880:intron | 30.0% |
| TTTATGAAGGTCATTCACAT+GGG | + | chr2_4:14179799-14179818 | Msa0316880:intron | 30.0% | |
| TTATCAAATAATGAAGGAGC+AGG | + | chr2_4:14179932-14179951 | Msa0316880:CDS | 30.0% | |
| GTCGGAAGTTATGAAAATAT+AGG | + | chr2_4:14179954-14179973 | Msa0316880:intron | 30.0% | |
| TTCTTCTATGATTATGTAGC+TGG | + | chr2_4:14180092-14180111 | Msa0316880:intron | 30.0% | |
| ! | GAAGTTGAAACATGTGTTTT+GGG | + | chr2_4:14180124-14180143 | Msa0316880:intron | 30.0% |
| ! | ATCGTCAAAGCATAACTTTT+GGG | + | chr2_4:14180264-14180283 | Msa0316880:intron | 30.0% |
| AGAAAGAAGAATCGTTTGTT+TGG | + | chr2_4:14180306-14180325 | Msa0316880:intron | 30.0% | |
| !! | TGAGACATTTTTGAAAGCAA+TGG | + | chr2_4:14180334-14180353 | Msa0316880:intron | 30.0% |
| !! | GAGACATTTTTGAAAGCAAT+GGG | + | chr2_4:14180335-14180354 | Msa0316880:intron | 30.0% |
| !! | AGACATTTTTGAAAGCAATG+GGG | + | chr2_4:14180336-14180355 | Msa0316880:intron | 30.0% |
| GATAATAACAGATCAAGATG+GGG | + | chr2_4:14180376-14180395 | Msa0316880:intron | 30.0% | |
| ATAATAACAGATCAAGATGG+GGG | + | chr2_4:14180377-14180396 | Msa0316880:intron | 30.0% | |
| GAGAGTGAAAATTCATTCTT+TGG | + | chr2_4:14180716-14180735 | Msa0316880:CDS | 30.0% | |
| TACATATTCAAAAGGAGTTG+TGG | + | chr2_4:14180920-14180939 | Msa0316880:CDS | 30.0% | |
| TTCATGCAAAATGTTTGAGT+CGG | + | chr2_4:14181074-14181093 | Msa0316880:intron | 30.0% | |
| ! | CTTTTTGTATTAAAGGGGAA+AGG | + | chr2_4:14181120-14181139 | Msa0316880:intron | 30.0% |
| CTATTCACAATGTAATGACT+TGG | - | chr2_4:14181159-14181178 | None:intergenic | 30.0% | |
| GTCATTACATTGTGAATAGA+TGG | + | chr2_4:14181160-14181179 | Msa0316880:intron | 30.0% | |
| TGTGAATAGATGGACAAAAT+TGG | + | chr2_4:14181170-14181189 | Msa0316880:intron | 30.0% | |
| !! | TGATTGTGATGGAAATGTTT+TGG | + | chr2_4:14181212-14181231 | Msa0316880:intron | 30.0% |
| ! | GCACATTAGTTTCAAAAACA+TGG | + | chr2_4:14181262-14181281 | Msa0316880:CDS | 30.0% |
| ATTGTTGAAATGCATGCATA+TGG | + | chr2_4:14181290-14181309 | Msa0316880:CDS | 30.0% | |
| ! | TTTGATACTTTAGAAGAAGG+AGG | + | chr2_4:14179513-14179532 | Msa0316880:intron | 30.0% |
| ! | AAGATAAAGATGGTGTCAAA+TGG | + | chr2_4:14179598-14179617 | Msa0316880:CDS | 30.0% |
| !!! | GGGTTTTAAAGAGGAAAAAA+AGG | + | chr2_4:14179644-14179663 | Msa0316880:CDS | 30.0% |
| ! | TTTTCAGCAATAAGCAATTG+TGG | - | chr2_4:14179678-14179697 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGAGAACTATTGA+TGG | + | chr2_4:14179756-14179775 | Msa0316880:CDS | 30.0% |
| ! | TTTTATGAAGGTCATTCACA+TGG | + | chr2_4:14179798-14179817 | Msa0316880:intron | 30.0% |
| TTTATGAAGGTCATTCACAT+GGG | + | chr2_4:14179799-14179818 | Msa0316880:intron | 30.0% | |
| TTATCAAATAATGAAGGAGC+AGG | + | chr2_4:14179932-14179951 | Msa0316880:CDS | 30.0% | |
| GTCGGAAGTTATGAAAATAT+AGG | + | chr2_4:14179954-14179973 | Msa0316880:intron | 30.0% | |
| TTCTTCTATGATTATGTAGC+TGG | + | chr2_4:14180092-14180111 | Msa0316880:intron | 30.0% | |
| ! | GAAGTTGAAACATGTGTTTT+GGG | + | chr2_4:14180124-14180143 | Msa0316880:intron | 30.0% |
| ! | ATCGTCAAAGCATAACTTTT+GGG | + | chr2_4:14180264-14180283 | Msa0316880:intron | 30.0% |
| AGAAAGAAGAATCGTTTGTT+TGG | + | chr2_4:14180306-14180325 | Msa0316880:intron | 30.0% | |
| !! | TGAGACATTTTTGAAAGCAA+TGG | + | chr2_4:14180334-14180353 | Msa0316880:intron | 30.0% |
| !! | GAGACATTTTTGAAAGCAAT+GGG | + | chr2_4:14180335-14180354 | Msa0316880:intron | 30.0% |
| !! | AGACATTTTTGAAAGCAATG+GGG | + | chr2_4:14180336-14180355 | Msa0316880:intron | 30.0% |
| GATAATAACAGATCAAGATG+GGG | + | chr2_4:14180376-14180395 | Msa0316880:intron | 30.0% | |
| ATAATAACAGATCAAGATGG+GGG | + | chr2_4:14180377-14180396 | Msa0316880:intron | 30.0% | |
| GAGAGTGAAAATTCATTCTT+TGG | + | chr2_4:14180716-14180735 | Msa0316880:CDS | 30.0% | |
| TACATATTCAAAAGGAGTTG+TGG | + | chr2_4:14180920-14180939 | Msa0316880:CDS | 30.0% | |
| TTCATGCAAAATGTTTGAGT+CGG | + | chr2_4:14181074-14181093 | Msa0316880:intron | 30.0% | |
| ! | CTTTTTGTATTAAAGGGGAA+AGG | + | chr2_4:14181120-14181139 | Msa0316880:intron | 30.0% |
| CTATTCACAATGTAATGACT+TGG | - | chr2_4:14181159-14181178 | None:intergenic | 30.0% | |
| GTCATTACATTGTGAATAGA+TGG | + | chr2_4:14181160-14181179 | Msa0316880:intron | 30.0% | |
| TGTGAATAGATGGACAAAAT+TGG | + | chr2_4:14181170-14181189 | Msa0316880:intron | 30.0% | |
| !! | TGATTGTGATGGAAATGTTT+TGG | + | chr2_4:14181212-14181231 | Msa0316880:intron | 30.0% |
| ! | GCACATTAGTTTCAAAAACA+TGG | + | chr2_4:14181262-14181281 | Msa0316880:CDS | 30.0% |
| ATTGTTGAAATGCATGCATA+TGG | + | chr2_4:14181290-14181309 | Msa0316880:CDS | 30.0% | |
| TGATCCAAAAAATACGTCAG+TGG | + | chr2_4:14179440-14179459 | Msa0316880:intron | 35.0% | |
| !!! | CATTCCACTGACGTATTTTT+TGG | - | chr2_4:14179447-14179466 | None:intergenic | 35.0% |
| ATCAAATACCTTGCCAATCA+CGG | - | chr2_4:14179499-14179518 | None:intergenic | 35.0% | |
| !!! | CTCAAAAGAGGGTTTTAAAG+AGG | + | chr2_4:14179635-14179654 | Msa0316880:CDS | 35.0% |
| AAAAAGAAAATTGACACGGG+AGG | + | chr2_4:14179716-14179735 | Msa0316880:CDS | 35.0% | |
| AAAAGAAAATTGACACGGGA+GGG | + | chr2_4:14179717-14179736 | Msa0316880:CDS | 35.0% | |
| CTTAGGAATTGTCTCTTTGA+AGG | - | chr2_4:14179834-14179853 | None:intergenic | 35.0% | |
| TTACACTTCTTGCTGATCTT+AGG | - | chr2_4:14179851-14179870 | None:intergenic | 35.0% | |
| ATTATGTAGCTGGCAATGAA+GGG | + | chr2_4:14180102-14180121 | Msa0316880:intron | 35.0% | |
| ! | GGAAGTTGAAACATGTGTTT+TGG | + | chr2_4:14180123-14180142 | Msa0316880:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | + | chr2_4:14180169-14180188 | Msa0316880:intron | 35.0% |
| ! | ATGATTTTTGCACCATTCAC+TGG | + | chr2_4:14180230-14180249 | Msa0316880:intron | 35.0% |
| TGATGATTTATGCCAGTGAA+TGG | - | chr2_4:14180245-14180264 | None:intergenic | 35.0% | |
| ! | CATCGTCAAAGCATAACTTT+TGG | + | chr2_4:14180263-14180282 | Msa0316880:intron | 35.0% |
| ! | TCGTCAAAGCATAACTTTTG+GGG | + | chr2_4:14180265-14180284 | Msa0316880:intron | 35.0% |
| !! | GACATTTTTGAAAGCAATGG+GGG | + | chr2_4:14180337-14180356 | Msa0316880:intron | 35.0% |
| !! | ACATTTTTGAAAGCAATGGG+GGG | + | chr2_4:14180338-14180357 | Msa0316880:intron | 35.0% |
| TATGAAGAATGCAATAGGAG+CGG | + | chr2_4:14180400-14180419 | Msa0316880:intron | 35.0% | |
| !!! | CAATAGGAGCGGTTTTAAAA+GGG | + | chr2_4:14180411-14180430 | Msa0316880:intron | 35.0% |
| AAAACCACTATTCTCATCCA+TGG | - | chr2_4:14180498-14180517 | None:intergenic | 35.0% | |
| ! | ATCGTTTCAAGTCATATGTC+TGG | + | chr2_4:14180522-14180541 | Msa0316880:intron | 35.0% |
| TTCCAATTCAAATTCTTCCG+AGG | - | chr2_4:14180558-14180577 | None:intergenic | 35.0% | |
| CGGAAGAATTTGAATTGGAA+TGG | + | chr2_4:14180558-14180577 | Msa0316880:CDS | 35.0% | |
| ATTAGTGATTACAGCTTGGA+AGG | + | chr2_4:14180590-14180609 | Msa0316880:CDS | 35.0% | |
| ! | TGTATGATCTAAGAAGCATG+TGG | + | chr2_4:14180633-14180652 | Msa0316880:CDS | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | - | chr2_4:14180708-14180727 | None:intergenic | 35.0% |
| GAATCCGAACTTAACTTTAG+TGG | + | chr2_4:14180748-14180767 | Msa0316880:CDS | 35.0% | |
| TGGAGTTGAAGGAACAAAAA+AGG | + | chr2_4:14180960-14180979 | Msa0316880:intron | 35.0% | |
| GTTGAAGGAACAAAAAAGGA+AGG | + | chr2_4:14180964-14180983 | Msa0316880:intron | 35.0% | |
| TGTTGTGAGAAAACATAGAG+AGG | + | chr2_4:14181017-14181036 | Msa0316880:intron | 35.0% | |
| !! | TTGTGATGGAAATGTTTTGG+AGG | + | chr2_4:14181215-14181234 | Msa0316880:intron | 35.0% |
| ATCAAGACCCTTAGATGAAT+TGG | + | chr2_4:14181401-14181420 | Msa0316880:CDS | 35.0% | |
| AAAGCCTCCAATTCATCTAA+GGG | - | chr2_4:14181411-14181430 | None:intergenic | 35.0% | |
| AAAAGCCTCCAATTCATCTA+AGG | - | chr2_4:14181412-14181431 | None:intergenic | 35.0% | |
| ! | GATGAATTGGAGGCTTTTAT+TGG | + | chr2_4:14181414-14181433 | Msa0316880:CDS | 35.0% |
| ATACCAAAGGTTGTGGAAAA+TGG | + | chr2_4:14181484-14181503 | Msa0316880:CDS | 35.0% | |
| GTTGTGGAAAATGGATCAAA+GGG | + | chr2_4:14181493-14181512 | Msa0316880:CDS | 35.0% | |
| TTGTGGAAAATGGATCAAAG+GGG | + | chr2_4:14181494-14181513 | Msa0316880:CDS | 35.0% | |
| AAAGAGAACGAGACTTTGTA+AGG | + | chr2_4:14181545-14181564 | Msa0316880:CDS | 35.0% | |
| TGATCCAAAAAATACGTCAG+TGG | + | chr2_4:14179440-14179459 | Msa0316880:intron | 35.0% | |
| !!! | CATTCCACTGACGTATTTTT+TGG | - | chr2_4:14179447-14179466 | None:intergenic | 35.0% |
| ATCAAATACCTTGCCAATCA+CGG | - | chr2_4:14179499-14179518 | None:intergenic | 35.0% | |
| !!! | CTCAAAAGAGGGTTTTAAAG+AGG | + | chr2_4:14179635-14179654 | Msa0316880:CDS | 35.0% |
| AAAAAGAAAATTGACACGGG+AGG | + | chr2_4:14179716-14179735 | Msa0316880:CDS | 35.0% | |
| AAAAGAAAATTGACACGGGA+GGG | + | chr2_4:14179717-14179736 | Msa0316880:CDS | 35.0% | |
| CTTAGGAATTGTCTCTTTGA+AGG | - | chr2_4:14179834-14179853 | None:intergenic | 35.0% | |
| TTACACTTCTTGCTGATCTT+AGG | - | chr2_4:14179851-14179870 | None:intergenic | 35.0% | |
| ATTATGTAGCTGGCAATGAA+GGG | + | chr2_4:14180102-14180121 | Msa0316880:intron | 35.0% | |
| ! | GGAAGTTGAAACATGTGTTT+TGG | + | chr2_4:14180123-14180142 | Msa0316880:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | + | chr2_4:14180169-14180188 | Msa0316880:intron | 35.0% |
| ! | ATGATTTTTGCACCATTCAC+TGG | + | chr2_4:14180230-14180249 | Msa0316880:intron | 35.0% |
| TGATGATTTATGCCAGTGAA+TGG | - | chr2_4:14180245-14180264 | None:intergenic | 35.0% | |
| ! | CATCGTCAAAGCATAACTTT+TGG | + | chr2_4:14180263-14180282 | Msa0316880:intron | 35.0% |
| ! | TCGTCAAAGCATAACTTTTG+GGG | + | chr2_4:14180265-14180284 | Msa0316880:intron | 35.0% |
| !! | GACATTTTTGAAAGCAATGG+GGG | + | chr2_4:14180337-14180356 | Msa0316880:intron | 35.0% |
| !! | ACATTTTTGAAAGCAATGGG+GGG | + | chr2_4:14180338-14180357 | Msa0316880:intron | 35.0% |
| TATGAAGAATGCAATAGGAG+CGG | + | chr2_4:14180400-14180419 | Msa0316880:intron | 35.0% | |
| !!! | CAATAGGAGCGGTTTTAAAA+GGG | + | chr2_4:14180411-14180430 | Msa0316880:intron | 35.0% |
| AAAACCACTATTCTCATCCA+TGG | - | chr2_4:14180498-14180517 | None:intergenic | 35.0% | |
| ! | ATCGTTTCAAGTCATATGTC+TGG | + | chr2_4:14180522-14180541 | Msa0316880:intron | 35.0% |
| TTCCAATTCAAATTCTTCCG+AGG | - | chr2_4:14180558-14180577 | None:intergenic | 35.0% | |
| CGGAAGAATTTGAATTGGAA+TGG | + | chr2_4:14180558-14180577 | Msa0316880:CDS | 35.0% | |
| ATTAGTGATTACAGCTTGGA+AGG | + | chr2_4:14180590-14180609 | Msa0316880:CDS | 35.0% | |
| ! | TGTATGATCTAAGAAGCATG+TGG | + | chr2_4:14180633-14180652 | Msa0316880:CDS | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | - | chr2_4:14180708-14180727 | None:intergenic | 35.0% |
| GAATCCGAACTTAACTTTAG+TGG | + | chr2_4:14180748-14180767 | Msa0316880:CDS | 35.0% | |
| TGGAGTTGAAGGAACAAAAA+AGG | + | chr2_4:14180960-14180979 | Msa0316880:intron | 35.0% | |
| GTTGAAGGAACAAAAAAGGA+AGG | + | chr2_4:14180964-14180983 | Msa0316880:intron | 35.0% | |
| TGTTGTGAGAAAACATAGAG+AGG | + | chr2_4:14181017-14181036 | Msa0316880:intron | 35.0% | |
| !! | TTGTGATGGAAATGTTTTGG+AGG | + | chr2_4:14181215-14181234 | Msa0316880:intron | 35.0% |
| ATCAAGACCCTTAGATGAAT+TGG | + | chr2_4:14181401-14181420 | Msa0316880:CDS | 35.0% | |
| AAAGCCTCCAATTCATCTAA+GGG | - | chr2_4:14181411-14181430 | None:intergenic | 35.0% | |
| AAAAGCCTCCAATTCATCTA+AGG | - | chr2_4:14181412-14181431 | None:intergenic | 35.0% | |
| ! | GATGAATTGGAGGCTTTTAT+TGG | + | chr2_4:14181414-14181433 | Msa0316880:CDS | 35.0% |
| ATACCAAAGGTTGTGGAAAA+TGG | + | chr2_4:14181484-14181503 | Msa0316880:CDS | 35.0% | |
| GTTGTGGAAAATGGATCAAA+GGG | + | chr2_4:14181493-14181512 | Msa0316880:CDS | 35.0% | |
| TTGTGGAAAATGGATCAAAG+GGG | + | chr2_4:14181494-14181513 | Msa0316880:CDS | 35.0% | |
| AAAGAGAACGAGACTTTGTA+AGG | + | chr2_4:14181545-14181564 | Msa0316880:CDS | 35.0% | |
| TCAAATACCTTGCCAATCAC+GGG | - | chr2_4:14179498-14179517 | None:intergenic | 40.0% | |
| AAAGCTTATGCTTATGTCGC+TGG | + | chr2_4:14179546-14179565 | Msa0316880:CDS | 40.0% | |
| TTCCTGCAATAGAGCTAATG+TGG | + | chr2_4:14179896-14179915 | Msa0316880:CDS | 40.0% | |
| TCCTGCAATAGAGCTAATGT+GGG | + | chr2_4:14179897-14179916 | Msa0316880:CDS | 40.0% | |
| CAAATAATGAAGGAGCAGGT+CGG | + | chr2_4:14179936-14179955 | Msa0316880:intron | 40.0% | |
| GATTATGTAGCTGGCAATGA+AGG | + | chr2_4:14180101-14180120 | Msa0316880:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | + | chr2_4:14180131-14180150 | Msa0316880:intron | 40.0% |
| !!! | GCAATAGGAGCGGTTTTAAA+AGG | + | chr2_4:14180410-14180429 | Msa0316880:intron | 40.0% |
| ! | CGTCTCATAGATTTTGCATG+TGG | + | chr2_4:14180435-14180454 | Msa0316880:intron | 40.0% |
| AGTTCCATGGATGAGAATAG+TGG | + | chr2_4:14180491-14180510 | Msa0316880:intron | 40.0% | |
| GTCCTCGGAAGAATTTGAAT+TGG | + | chr2_4:14180553-14180572 | Msa0316880:CDS | 40.0% | |
| GATTACAGCTTGGAAGGAAA+TGG | + | chr2_4:14180596-14180615 | Msa0316880:CDS | 40.0% | |
| ! | TCTAAGAAGCATGTGGATAC+CGG | + | chr2_4:14180640-14180659 | Msa0316880:CDS | 40.0% |
| TCCAGAATTGAAGATGCACA+TGG | + | chr2_4:14180853-14180872 | Msa0316880:CDS | 40.0% | |
| TCCATGTGCATCTTCAATTC+TGG | - | chr2_4:14180857-14180876 | None:intergenic | 40.0% | |
| TGTGTAGATTGTGGAGTTGA+AGG | + | chr2_4:14180949-14180968 | Msa0316880:intron | 40.0% | |
| TGCAAAATGTTTGAGTCGGA+AGG | + | chr2_4:14181078-14181097 | Msa0316880:intron | 40.0% | |
| TTGAAATGCATGCATATGGC+TGG | + | chr2_4:14181294-14181313 | Msa0316880:CDS | 40.0% | |
| AAGACCCTTAGATGAATTGG+AGG | + | chr2_4:14181404-14181423 | Msa0316880:CDS | 40.0% | |
| TTGGTATTTGAAGGTTCAGG+TGG | - | chr2_4:14181471-14181490 | None:intergenic | 40.0% | |
| CCTTTGGTATTTGAAGGTTC+AGG | - | chr2_4:14181474-14181493 | None:intergenic | 40.0% | |
| CCTGAACCTTCAAATACCAA+AGG | + | chr2_4:14181471-14181490 | Msa0316880:CDS | 40.0% | |
| CCACAACCTTTGGTATTTGA+AGG | - | chr2_4:14181480-14181499 | None:intergenic | 40.0% | |
| CCTTCAAATACCAAAGGTTG+TGG | + | chr2_4:14181477-14181496 | Msa0316880:CDS | 40.0% | |
| ! | GATCCATTTTCCACAACCTT+TGG | - | chr2_4:14181490-14181509 | None:intergenic | 40.0% |
| GGTTGTGGAAAATGGATCAA+AGG | + | chr2_4:14181492-14181511 | Msa0316880:CDS | 40.0% | |
| TGTGGAAAATGGATCAAAGG+GGG | + | chr2_4:14181495-14181514 | Msa0316880:CDS | 40.0% | |
| TCAAATACCTTGCCAATCAC+GGG | - | chr2_4:14179498-14179517 | None:intergenic | 40.0% | |
| AAAGCTTATGCTTATGTCGC+TGG | + | chr2_4:14179546-14179565 | Msa0316880:CDS | 40.0% | |
| TTCCTGCAATAGAGCTAATG+TGG | + | chr2_4:14179896-14179915 | Msa0316880:CDS | 40.0% | |
| TCCTGCAATAGAGCTAATGT+GGG | + | chr2_4:14179897-14179916 | Msa0316880:CDS | 40.0% | |
| CAAATAATGAAGGAGCAGGT+CGG | + | chr2_4:14179936-14179955 | Msa0316880:intron | 40.0% | |
| GATTATGTAGCTGGCAATGA+AGG | + | chr2_4:14180101-14180120 | Msa0316880:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | + | chr2_4:14180131-14180150 | Msa0316880:intron | 40.0% |
| !!! | GCAATAGGAGCGGTTTTAAA+AGG | + | chr2_4:14180410-14180429 | Msa0316880:intron | 40.0% |
| ! | CGTCTCATAGATTTTGCATG+TGG | + | chr2_4:14180435-14180454 | Msa0316880:intron | 40.0% |
| AGTTCCATGGATGAGAATAG+TGG | + | chr2_4:14180491-14180510 | Msa0316880:intron | 40.0% | |
| GTCCTCGGAAGAATTTGAAT+TGG | + | chr2_4:14180553-14180572 | Msa0316880:CDS | 40.0% | |
| GATTACAGCTTGGAAGGAAA+TGG | + | chr2_4:14180596-14180615 | Msa0316880:CDS | 40.0% | |
| ! | TCTAAGAAGCATGTGGATAC+CGG | + | chr2_4:14180640-14180659 | Msa0316880:CDS | 40.0% |
| TCCAGAATTGAAGATGCACA+TGG | + | chr2_4:14180853-14180872 | Msa0316880:CDS | 40.0% | |
| TCCATGTGCATCTTCAATTC+TGG | - | chr2_4:14180857-14180876 | None:intergenic | 40.0% | |
| TGTGTAGATTGTGGAGTTGA+AGG | + | chr2_4:14180949-14180968 | Msa0316880:intron | 40.0% | |
| TGCAAAATGTTTGAGTCGGA+AGG | + | chr2_4:14181078-14181097 | Msa0316880:intron | 40.0% | |
| TTGAAATGCATGCATATGGC+TGG | + | chr2_4:14181294-14181313 | Msa0316880:CDS | 40.0% | |
| AAGACCCTTAGATGAATTGG+AGG | + | chr2_4:14181404-14181423 | Msa0316880:CDS | 40.0% | |
| TTGGTATTTGAAGGTTCAGG+TGG | - | chr2_4:14181471-14181490 | None:intergenic | 40.0% | |
| CCTTTGGTATTTGAAGGTTC+AGG | - | chr2_4:14181474-14181493 | None:intergenic | 40.0% | |
| CCTGAACCTTCAAATACCAA+AGG | + | chr2_4:14181471-14181490 | Msa0316880:CDS | 40.0% | |
| CCACAACCTTTGGTATTTGA+AGG | - | chr2_4:14181480-14181499 | None:intergenic | 40.0% | |
| CCTTCAAATACCAAAGGTTG+TGG | + | chr2_4:14181477-14181496 | Msa0316880:CDS | 40.0% | |
| ! | GATCCATTTTCCACAACCTT+TGG | - | chr2_4:14181490-14181509 | None:intergenic | 40.0% |
| GGTTGTGGAAAATGGATCAA+AGG | + | chr2_4:14181492-14181511 | Msa0316880:CDS | 40.0% | |
| TGTGGAAAATGGATCAAAGG+GGG | + | chr2_4:14181495-14181514 | Msa0316880:CDS | 40.0% | |
| GGATCATTACCGTCTTTCGA+CGG | - | chr2_4:14179426-14179445 | None:intergenic | 45.0% | |
| CCTGCAATAGAGCTAATGTG+GGG | + | chr2_4:14179898-14179917 | Msa0316880:CDS | 45.0% | |
| ! | GGGGGTATGAAGAATGCAAT+AGG | + | chr2_4:14180395-14180414 | Msa0316880:intron | 45.0% |
| AGAAAAGGTGGGTAGTTCCA+TGG | + | chr2_4:14180478-14180497 | Msa0316880:intron | 45.0% | |
| ACAGCTTGGAAGGAAATGGA+TGG | + | chr2_4:14180600-14180619 | Msa0316880:CDS | 45.0% | |
| ! | TTTAGAGAAGCACGCTAGAG+AGG | + | chr2_4:14180877-14180896 | Msa0316880:CDS | 45.0% |
| TGGAGTGCATGTGTAGATTG+TGG | + | chr2_4:14180940-14180959 | Msa0316880:intron | 45.0% | |
| ATTGCTCCTCATTTACGACG+AGG | + | chr2_4:14181332-14181351 | Msa0316880:CDS | 45.0% | |
| TTGCTCCTCATTTACGACGA+GGG | + | chr2_4:14181333-14181352 | Msa0316880:CDS | 45.0% | |
| TACAACCCTCGTCGTAAATG+AGG | - | chr2_4:14181341-14181360 | None:intergenic | 45.0% | |
| GTGGAAAATGGATCAAAGGG+GGG | + | chr2_4:14181496-14181515 | Msa0316880:CDS | 45.0% | |
| GGGACAATTGCGACTATCAT+GGG | - | chr2_4:14181589-14181608 | None:intergenic | 45.0% | |
| TGGGACAATTGCGACTATCA+TGG | - | chr2_4:14181590-14181609 | None:intergenic | 45.0% | |
| GGATCATTACCGTCTTTCGA+CGG | - | chr2_4:14179426-14179445 | None:intergenic | 45.0% | |
| CCTGCAATAGAGCTAATGTG+GGG | + | chr2_4:14179898-14179917 | Msa0316880:CDS | 45.0% | |
| ! | GGGGGTATGAAGAATGCAAT+AGG | + | chr2_4:14180395-14180414 | Msa0316880:intron | 45.0% |
| AGAAAAGGTGGGTAGTTCCA+TGG | + | chr2_4:14180478-14180497 | Msa0316880:intron | 45.0% | |
| ACAGCTTGGAAGGAAATGGA+TGG | + | chr2_4:14180600-14180619 | Msa0316880:CDS | 45.0% | |
| ! | TTTAGAGAAGCACGCTAGAG+AGG | + | chr2_4:14180877-14180896 | Msa0316880:CDS | 45.0% |
| TGGAGTGCATGTGTAGATTG+TGG | + | chr2_4:14180940-14180959 | Msa0316880:intron | 45.0% | |
| ATTGCTCCTCATTTACGACG+AGG | + | chr2_4:14181332-14181351 | Msa0316880:CDS | 45.0% | |
| TTGCTCCTCATTTACGACGA+GGG | + | chr2_4:14181333-14181352 | Msa0316880:CDS | 45.0% | |
| TACAACCCTCGTCGTAAATG+AGG | - | chr2_4:14181341-14181360 | None:intergenic | 45.0% | |
| GTGGAAAATGGATCAAAGGG+GGG | + | chr2_4:14181496-14181515 | Msa0316880:CDS | 45.0% | |
| GGGACAATTGCGACTATCAT+GGG | - | chr2_4:14181589-14181608 | None:intergenic | 45.0% | |
| TGGGACAATTGCGACTATCA+TGG | - | chr2_4:14181590-14181609 | None:intergenic | 45.0% | |
| TTACCCTCACCGTCGAAAGA+CGG | + | chr2_4:14179414-14179433 | Msa0316880:CDS | 50.0% | |
| TTACCGTCTTTCGACGGTGA+GGG | - | chr2_4:14179420-14179439 | None:intergenic | 50.0% | |
| ATTACCGTCTTTCGACGGTG+AGG | - | chr2_4:14179421-14179440 | None:intergenic | 50.0% | |
| GGAATGAATTCCTGCGTGTG+AGG | + | chr2_4:14179461-14179480 | Msa0316880:intron | 50.0% | |
| GATGACCTCAAACCCGTGAT+TGG | + | chr2_4:14179483-14179502 | Msa0316880:intron | 50.0% | |
| !! | CCCCACATTAGCTCTATTGC+AGG | - | chr2_4:14179901-14179920 | None:intergenic | 50.0% |
| ! | TGTCTGGAACTCAGAGTCCT+CGG | + | chr2_4:14180538-14180557 | Msa0316880:CDS | 50.0% |
| GATCAAAGGGGGGAAAGAGA+AGG | + | chr2_4:14181506-14181525 | Msa0316880:CDS | 50.0% | |
| TTACCCTCACCGTCGAAAGA+CGG | + | chr2_4:14179414-14179433 | Msa0316880:CDS | 50.0% | |
| TTACCGTCTTTCGACGGTGA+GGG | - | chr2_4:14179420-14179439 | None:intergenic | 50.0% | |
| ATTACCGTCTTTCGACGGTG+AGG | - | chr2_4:14179421-14179440 | None:intergenic | 50.0% | |
| GGAATGAATTCCTGCGTGTG+AGG | + | chr2_4:14179461-14179480 | Msa0316880:intron | 50.0% | |
| GATGACCTCAAACCCGTGAT+TGG | + | chr2_4:14179483-14179502 | Msa0316880:intron | 50.0% | |
| !! | CCCCACATTAGCTCTATTGC+AGG | - | chr2_4:14179901-14179920 | None:intergenic | 50.0% |
| ! | TGTCTGGAACTCAGAGTCCT+CGG | + | chr2_4:14180538-14180557 | Msa0316880:CDS | 50.0% |
| GATCAAAGGGGGGAAAGAGA+AGG | + | chr2_4:14181506-14181525 | Msa0316880:CDS | 50.0% | |
| TTGAGGTCATCCTCACACGC+AGG | - | chr2_4:14179474-14179493 | None:intergenic | 55.0% | |
| CCTTGCCAATCACGGGTTTG+AGG | - | chr2_4:14179491-14179510 | None:intergenic | 55.0% | |
| CCTCAAACCCGTGATTGGCA+AGG | + | chr2_4:14179488-14179507 | Msa0316880:intron | 55.0% | |
| AGGGGGGAAAGAGAAGGCAA+TGG | + | chr2_4:14181512-14181531 | Msa0316880:CDS | 55.0% | |
| TTGAGGTCATCCTCACACGC+AGG | - | chr2_4:14179474-14179493 | None:intergenic | 55.0% | |
| CCTTGCCAATCACGGGTTTG+AGG | - | chr2_4:14179491-14179510 | None:intergenic | 55.0% | |
| CCTCAAACCCGTGATTGGCA+AGG | + | chr2_4:14179488-14179507 | Msa0316880:intron | 55.0% | |
| AGGGGGGAAAGAGAAGGCAA+TGG | + | chr2_4:14181512-14181531 | Msa0316880:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14179377 | 14181623 | 14179377 | ID=Msa0316880;Name=Msa0316880 |
| chr2_4 | mRNA | 14179377 | 14181623 | 14179377 | ID=Msa0316880-mRNA-1;Parent=Msa0316880;Name=Msa0316880-mRNA-1;_AED=0.21;_eAED=0.22;_QI=10|0|0|0.83|0|0.16|6|0|406 |
| chr2_4 | exon | 14179377 | 14179435 | 14179377 | ID=Msa0316880-mRNA-1:exon:5381;Parent=Msa0316880-mRNA-1 |
| chr2_4 | exon | 14179529 | 14179777 | 14179529 | ID=Msa0316880-mRNA-1:exon:5382;Parent=Msa0316880-mRNA-1 |
| chr2_4 | exon | 14179808 | 14179953 | 14179808 | ID=Msa0316880-mRNA-1:exon:5383;Parent=Msa0316880-mRNA-1 |
| chr2_4 | exon | 14180533 | 14180780 | 14180533 | ID=Msa0316880-mRNA-1:exon:5384;Parent=Msa0316880-mRNA-1 |
| chr2_4 | exon | 14180811 | 14180949 | 14180811 | ID=Msa0316880-mRNA-1:exon:5385;Parent=Msa0316880-mRNA-1 |
| chr2_4 | exon | 14181237 | 14181623 | 14181237 | ID=Msa0316880-mRNA-1:exon:5386;Parent=Msa0316880-mRNA-1 |
| chr2_4 | five_prime_UTR | 14179377 | 14179386 | 14179377 | ID=Msa0316880-mRNA-1:five_prime_utr;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14179387 | 14179435 | 14179387 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14179529 | 14179777 | 14179529 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14179808 | 14179953 | 14179808 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14180533 | 14180780 | 14180533 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14180811 | 14180949 | 14180811 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| chr2_4 | CDS | 14181237 | 14181623 | 14181237 | ID=Msa0316880-mRNA-1:cds;Parent=Msa0316880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
