Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317200 | XP_003594269.2 | 88.415 | 492 | 35 | 4 | 2 | 485 | 17 | 494 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317200 | sp|Q9ATB4|TAD2B_ARATH | 56.389 | 493 | 181 | 10 | 3 | 485 | 18 | 486 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0317200 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317200 | MtrunA17_Chr2g0290341 | 83.333 | 498 | 33 | 4 | 24 | 485 | 22 | 505 | 0.0 | 833 |
| Msa0317200 | MtrunA17_Chr2g0290321 | 72.150 | 535 | 94 | 7 | 3 | 485 | 19 | 550 | 0.0 | 753 |
| Msa0317200 | MtrunA17_Chr7g0239471 | 71.341 | 492 | 111 | 6 | 2 | 485 | 17 | 486 | 0.0 | 648 |
| Msa0317200 | MtrunA17_Chr3g0120841 | 46.041 | 543 | 229 | 7 | 3 | 483 | 21 | 561 | 8.98e-149 | 436 |
| Msa0317200 | MtrunA17_Chr3g0120231 | 74.038 | 208 | 45 | 2 | 286 | 485 | 2 | 208 | 1.61e-99 | 298 |
| Msa0317200 | MtrunA17_Chr3g0120201 | 48.263 | 259 | 126 | 4 | 231 | 483 | 6 | 262 | 5.44e-73 | 231 |
| Msa0317200 | MtrunA17_Chr3g0120221 | 57.927 | 164 | 65 | 2 | 3 | 164 | 16 | 177 | 1.23e-61 | 199 |
| Msa0317200 | MtrunA17_Chr7g0238851 | 75.949 | 79 | 17 | 1 | 4 | 82 | 5 | 81 | 2.22e-29 | 111 |
| Msa0317200 | MtrunA17_Chr3g0120181 | 75.862 | 58 | 14 | 0 | 25 | 82 | 2 | 59 | 4.24e-28 | 106 |
| Msa0317200 | MtrunA17_Chr3g0120191 | 61.111 | 72 | 28 | 0 | 94 | 165 | 11 | 82 | 2.33e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317200 | AT4G16420.2 | 56.851 | 489 | 181 | 9 | 3 | 485 | 18 | 482 | 0.0 | 540 |
| Msa0317200 | AT4G16420.1 | 56.389 | 493 | 181 | 10 | 3 | 485 | 18 | 486 | 0.0 | 534 |
| Msa0317200 | AT4G16420.3 | 56.187 | 493 | 181 | 10 | 3 | 485 | 18 | 485 | 0.0 | 534 |
| Msa0317200 | AT3G07740.1 | 40.410 | 537 | 258 | 6 | 3 | 486 | 20 | 547 | 1.25e-130 | 390 |
| Msa0317200 | AT3G07740.3 | 41.088 | 533 | 251 | 7 | 8 | 486 | 3 | 526 | 9.90e-130 | 387 |
| Msa0317200 | AT3G07740.4 | 39.890 | 544 | 258 | 7 | 3 | 486 | 20 | 554 | 8.31e-128 | 383 |
| Msa0317200 | AT3G07740.2 | 40.496 | 484 | 226 | 6 | 56 | 486 | 2 | 476 | 2.78e-114 | 345 |
Find 102 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTTCTTGAGGAATT+TGG | 0.149009 | 2_4:-14789937 | None:intergenic |
| AGACAGAAGAATGCTTTATT+TGG | 0.172431 | 2_4:+14788195 | Msa0317200:CDS |
| TTTGGAGATAATTCAGAATT+TGG | 0.173645 | 2_4:+14788213 | Msa0317200:CDS |
| TCTCCAAAGGACGGAGATTT+TGG | 0.187602 | 2_4:+14789904 | Msa0317200:CDS |
| AAATGTATGGCCTGGAAAAT+TGG | 0.221477 | 2_4:+14789278 | Msa0317200:CDS |
| TCTTCATCTGCACTCCAGTC+TGG | 0.242682 | 2_4:-14789099 | None:intergenic |
| TTCGGAACCTTGTGATTGTT+CGG | 0.301945 | 2_4:-14790673 | None:intergenic |
| TCAGCATCATCATCATATTC+AGG | 0.318123 | 2_4:-14790012 | None:intergenic |
| AAGGAGCAGGTGAAGCAAAA+TGG | 0.330889 | 2_4:+14788678 | Msa0317200:CDS |
| CCTCCAAAATCTCCGTCCTT+TGG | 0.332116 | 2_4:-14789907 | None:intergenic |
| GCATGAACACGTCATATTTC+CGG | 0.336745 | 2_4:-14790347 | None:intergenic |
| TTATACGTATCTATAATAAA+AGG | 0.343925 | 2_4:+14790103 | Msa0317200:CDS |
| ACAAAAGCAATCATGATTAC+AGG | 0.344529 | 2_4:+14788825 | Msa0317200:CDS |
| TCGGAACCTTGTGATTGTTC+GGG | 0.376591 | 2_4:-14790672 | None:intergenic |
| TGCAGCTGGTGCTAACAAAA+AGG | 0.378782 | 2_4:+14789754 | Msa0317200:CDS |
| CTTCATCTGCACTCCAGTCT+GGG | 0.385677 | 2_4:-14789098 | None:intergenic |
| TCAACACATAAGTCAAAATC+AGG | 0.387672 | 2_4:-14788770 | None:intergenic |
| AGCTGAAGCAGATATATATC+TGG | 0.388984 | 2_4:+14790585 | Msa0317200:CDS |
| GGTGTTAAATCCTTCTCAAC+TGG | 0.395197 | 2_4:-14790306 | None:intergenic |
| CCCGGGAAAAGCTAGTTTGC+TGG | 0.399949 | 2_4:+14789790 | Msa0317200:CDS |
| GAATTTGGTGCTGCTGCTCC+AGG | 0.409359 | 2_4:+14788228 | Msa0317200:CDS |
| GGATTTAACACCCGAGGAAA+AGG | 0.418496 | 2_4:+14790317 | Msa0317200:CDS |
| ATGCTCATTAAGAAGGGTAT+TGG | 0.420108 | 2_4:+14791020 | Msa0317200:CDS |
| AAGCTGAAGGACGTGCTCGC+AGG | 0.426743 | 2_4:+14790626 | Msa0317200:CDS |
| CCGAATGCATTGATGTCTGC+AGG | 0.431685 | 2_4:+14790691 | Msa0317200:CDS |
| AACGTTTGTGCTGCGAGTTA+AGG | 0.442285 | 2_4:+14790862 | Msa0317200:CDS |
| TGAGAAATTACTCGCTGATA+TGG | 0.449215 | 2_4:+14790032 | Msa0317200:CDS |
| TTCCTCTCATCTCCCCAGAC+TGG | 0.451454 | 2_4:+14789085 | Msa0317200:CDS |
| CTGTCGGTACAAATGATTGC+TGG | 0.454974 | 2_4:+14790921 | Msa0317200:CDS |
| GGGAATTGAAATGTATGGCC+TGG | 0.457047 | 2_4:+14789270 | Msa0317200:intron |
| GTTCATGCGCTTTCATACTA+AGG | 0.465103 | 2_4:+14790362 | Msa0317200:CDS |
| AAGAAATGAAGGCCGTACTT+TGG | 0.471852 | 2_4:+14789948 | Msa0317200:CDS |
| AGGAGCAGGTGAAGCAAAAT+GGG | 0.476294 | 2_4:+14788679 | Msa0317200:CDS |
| AATGTATGGCCTGGAAAATT+GGG | 0.480655 | 2_4:+14789279 | Msa0317200:CDS |
| CTGCAGGAAGCAATTGCTGC+TGG | 0.486220 | 2_4:+14790550 | Msa0317200:intron |
| GAACTTCTTGCAACGGCGAA+AGG | 0.487441 | 2_4:+14789524 | Msa0317200:CDS |
| TTGATCCCATGAAAATTGAC+AGG | 0.487796 | 2_4:+14790988 | Msa0317200:CDS |
| AACTTCTTGCAACGGCGAAA+GGG | 0.488996 | 2_4:+14789525 | Msa0317200:CDS |
| TACTGCAAGAAAGATATTAC+CGG | 0.489315 | 2_4:+14788719 | Msa0317200:CDS |
| GGGAAGGGTGACGGCAAGAA+AGG | 0.489761 | 2_4:+14789545 | Msa0317200:CDS |
| GTCAACACACATGCTGCAGC+TGG | 0.495214 | 2_4:+14789740 | Msa0317200:CDS |
| AGGGTCGGATTCTGGGCCCT+CGG | 0.495801 | 2_4:+14789718 | Msa0317200:intron |
| GTATGACATGCTCATTAAGA+AGG | 0.500449 | 2_4:+14791013 | Msa0317200:CDS |
| AAAGGCATCCAATAAAGGCC+CGG | 0.500851 | 2_4:+14789772 | Msa0317200:CDS |
| AGCTGAAGGACGTGCTCGCA+GGG | 0.501164 | 2_4:+14790627 | Msa0317200:CDS |
| CTTGAACATTTGATGAGCAT+CGG | 0.502400 | 2_4:-14790961 | None:intergenic |
| AGGACATGTCTCATGCTGTT+GGG | 0.502752 | 2_4:+14789489 | Msa0317200:intron |
| CAGTTCTGAGCAATTCATCA+TGG | 0.506351 | 2_4:-14790389 | None:intergenic |
| CCTGCAGACATCAATGCATT+CGG | 0.509384 | 2_4:-14790691 | None:intergenic |
| CAGCAATCATTTGTACCGAC+AGG | 0.513175 | 2_4:-14790920 | None:intergenic |
| TAGGACATGTCTCATGCTGT+TGG | 0.513693 | 2_4:+14789488 | Msa0317200:intron |
| GAAGCCTATCATACTGGAAG+AGG | 0.514943 | 2_4:-14789388 | None:intergenic |
| CCAAATTCCTCAAGAAATGA+AGG | 0.515725 | 2_4:+14789937 | Msa0317200:CDS |
| GGCACACGGCACACTTGATA+CGG | 0.529984 | 2_4:-14788748 | None:intergenic |
| TGGTTATAACCCGAAAAGAC+AGG | 0.531230 | 2_4:+14789981 | Msa0317200:CDS |
| CTCTTGCATCTTCAGATACA+CGG | 0.533130 | 2_4:-14790895 | None:intergenic |
| TTCATCTGCACTCCAGTCTG+GGG | 0.535702 | 2_4:-14789097 | None:intergenic |
| TTGACAGCACTTGAAGTAGC+TGG | 0.541031 | 2_4:-14790715 | None:intergenic |
| TAAGAACAAAGAGGCATGCA+TGG | 0.541880 | 2_4:+14789327 | Msa0317200:CDS |
| CATACTGGAAGAGGGAAGAC+CGG | 0.547943 | 2_4:-14789379 | None:intergenic |
| AAGGCATCCAATAAAGGCCC+GGG | 0.550057 | 2_4:+14789773 | Msa0317200:CDS |
| AGTACGGCCTTCATTTCTTG+AGG | 0.551492 | 2_4:-14789944 | None:intergenic |
| TGCATCTTCAGATACACGGT+TGG | 0.556814 | 2_4:-14790891 | None:intergenic |
| TCTTGCAACGGCGAAAGGGA+AGG | 0.561131 | 2_4:+14789529 | Msa0317200:CDS |
| CACTGGCTTCAACCAAAGTA+CGG | 0.564700 | 2_4:-14789960 | None:intergenic |
| TCTGGCAAATAAGAGAAGAA+AGG | 0.569800 | 2_4:+14790603 | Msa0317200:CDS |
| CGTACTTTGGTTGAAGCCAG+TGG | 0.574934 | 2_4:+14789961 | Msa0317200:CDS |
| TGTGAGATAGGTCAAGGAGC+AGG | 0.575240 | 2_4:+14788665 | Msa0317200:intron |
| CTTGCAACGGCGAAAGGGAA+GGG | 0.578244 | 2_4:+14789530 | Msa0317200:CDS |
| ATATGAAAATCCAGTTGAGA+AGG | 0.580164 | 2_4:+14790296 | Msa0317200:CDS |
| ACGGCGAAAGGGAAGGGTGA+CGG | 0.581275 | 2_4:+14789536 | Msa0317200:CDS |
| GCCATTGACAGATTCTCCAA+AGG | 0.588433 | 2_4:+14789891 | Msa0317200:intron |
| CCGAGGAAAAGGCAATATGC+CGG | 0.591718 | 2_4:+14790328 | Msa0317200:CDS |
| AAGAGAAGAAAGGAAGCTGA+AGG | 0.596906 | 2_4:+14790613 | Msa0317200:CDS |
| TGAAGAAATGTTGATTCTAG+AGG | 0.597822 | 2_4:+14789116 | Msa0317200:CDS |
| CAAAAGCAATCATGATTACA+GGG | 0.598809 | 2_4:+14788826 | Msa0317200:CDS |
| CAATCATGATTACAGGGTCA+TGG | 0.603132 | 2_4:+14788832 | Msa0317200:CDS |
| GGCTCGATGAAAGAGAGCGC+AGG | 0.603188 | 2_4:+14790244 | Msa0317200:intron |
| TGCAGCATGTGTGTTGACCG+AGG | 0.608087 | 2_4:-14789735 | None:intergenic |
| GCAGCATGTGTGTTGACCGA+GGG | 0.612844 | 2_4:-14789734 | None:intergenic |
| CAGAGAAGAACTTCTTGCAA+CGG | 0.616082 | 2_4:+14789517 | Msa0317200:CDS |
| GCAGAAGTAGCTGAGCATGT+TGG | 0.618695 | 2_4:+14789301 | Msa0317200:CDS |
| TATGACATGCTCATTAAGAA+GGG | 0.622187 | 2_4:+14791014 | Msa0317200:CDS |
| CTCCAGTCTGGGGAGATGAG+AGG | 0.625328 | 2_4:-14789087 | None:intergenic |
| GGAAAAGCTAGTTTGCTGGA+AGG | 0.630114 | 2_4:+14789794 | Msa0317200:CDS |
| AAGCCTATCATACTGGAAGA+GGG | 0.633147 | 2_4:-14789387 | None:intergenic |
| TTGACAGATTCTCCAAAGGA+CGG | 0.642816 | 2_4:+14789895 | Msa0317200:intron |
| CGAATGCATTGATGTCTGCA+GGG | 0.644855 | 2_4:+14790692 | Msa0317200:CDS |
| TGAGAAGGATTTAACACCCG+AGG | 0.647022 | 2_4:+14790311 | Msa0317200:CDS |
| TAAGTCAAAATCAGGGCACA+CGG | 0.654683 | 2_4:-14788762 | None:intergenic |
| GGCAAGAGAAAGTACTCATG+TGG | 0.657734 | 2_4:+14790648 | Msa0317200:CDS |
| GAAGATGCAAGAGGACCTGT+CGG | 0.659393 | 2_4:+14790905 | Msa0317200:CDS |
| CGTGTATCTGAAGATGCAAG+AGG | 0.659698 | 2_4:+14790896 | Msa0317200:CDS |
| AGATTAAGAGAGATCTCAGG+AGG | 0.659721 | 2_4:-14791045 | None:intergenic |
| TAATGACAATGACACTGAGG+AGG | 0.665463 | 2_4:+14790059 | Msa0317200:CDS |
| ACACTTGATACGGATTACTC+CGG | 0.666906 | 2_4:-14788738 | None:intergenic |
| CAACACATAAGTCAAAATCA+GGG | 0.668458 | 2_4:-14788769 | None:intergenic |
| TATCTGCTTCAGCTGAAGTG+CGG | 0.668725 | 2_4:-14790576 | None:intergenic |
| TGATCCCATGAAAATTGACA+GGG | 0.695744 | 2_4:+14790989 | Msa0317200:CDS |
| TGTTGGAACTAAGAACAAAG+AGG | 0.697393 | 2_4:+14789318 | Msa0317200:CDS |
| TGTGGTCCCGAACAATCACA+AGG | 0.700460 | 2_4:+14790666 | Msa0317200:CDS |
| GTTTAATGACAATGACACTG+AGG | 0.755990 | 2_4:+14790056 | Msa0317200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTGTTTATATATTTTA+GGG | + | chr2_4:14789699-14789718 | Msa0317200:intron | 10.0% |
| !! | TATAGAATTAATAAGTACAA+TGG | - | chr2_4:14788275-14788294 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTCATTTTCAAAA+AGG | + | chr2_4:14788565-14788584 | Msa0317200:intron | 15.0% |
| !!! | TTTAGATTAGTTTTTTAACA+CGG | + | chr2_4:14789036-14789055 | Msa0317200:intron | 15.0% |
| !!! | AGTTATAATATTTTCGTTTT+AGG | + | chr2_4:14789249-14789268 | Msa0317200:intron | 15.0% |
| !!! | GTTATAATATTTTCGTTTTA+GGG | + | chr2_4:14789250-14789269 | Msa0317200:intron | 15.0% |
| !!! | CTCTATTGTTTATATATTTT+AGG | + | chr2_4:14789698-14789717 | Msa0317200:intron | 15.0% |
| !! | TTATACGTATCTATAATAAA+AGG | + | chr2_4:14790103-14790122 | Msa0317200:CDS | 15.0% |
| !!! | TGTACTTTTATTTACTGTAT+AGG | + | chr2_4:14788166-14788185 | Msa0317200:intron | 20.0% |
| !!! | GTACTTTTATTTACTGTATA+GGG | + | chr2_4:14788167-14788186 | Msa0317200:intron | 20.0% |
| !! | AACTATAGCTATAAGTATTA+TGG | + | chr2_4:14788322-14788341 | Msa0317200:intron | 20.0% |
| !!! | TTTAGCTTAAGATATGATAT+AGG | + | chr2_4:14788527-14788546 | Msa0317200:intron | 20.0% |
| !! | AATGAAAAGAAAAAAATCCA+TGG | - | chr2_4:14788558-14788577 | None:intergenic | 20.0% |
| !!! | ATTTTCAAAAAGGAAACATT+AGG | + | chr2_4:14788575-14788594 | Msa0317200:intron | 20.0% |
| !!! | TTTTCAAAAAGGAAACATTA+GGG | + | chr2_4:14788576-14788595 | Msa0317200:intron | 20.0% |
| !! | ATTCATTCATTTATGATTCA+TGG | + | chr2_4:14788615-14788634 | Msa0317200:intron | 20.0% |
| !!! | TGAAAATAATTTTGTGAGAT+AGG | + | chr2_4:14788653-14788672 | Msa0317200:intron | 20.0% |
| !! | TATCATATTCGTTCATATAA+AGG | + | chr2_4:14789436-14789455 | Msa0317200:intron | 20.0% |
| !!! | TTGTTTATATATTTTAGGGT+CGG | + | chr2_4:14789703-14789722 | Msa0317200:intron | 20.0% |
| !!! | AACAACCATTTTAGTTTTAT+AGG | + | chr2_4:14790128-14790147 | Msa0317200:intron | 20.0% |
| !! | AGAAACCTATAAAACTAAAA+TGG | - | chr2_4:14790136-14790155 | None:intergenic | 20.0% |
| !!! | ATTATTTATGATTTTGAGTG+TGG | - | chr2_4:14790168-14790187 | None:intergenic | 20.0% |
| !!! | ACGTTTTTCAATTTAAAGAT+AGG | - | chr2_4:14790220-14790239 | None:intergenic | 20.0% |
| ! | TTTGGAGATAATTCAGAATT+TGG | + | chr2_4:14788213-14788232 | Msa0317200:CDS | 25.0% |
| ! | AGGAAAACATTTGAAAGTAA+TGG | - | chr2_4:14788865-14788884 | None:intergenic | 25.0% |
| !! | ATATGACAAAGCACTATATT+TGG | + | chr2_4:14789187-14789206 | Msa0317200:intron | 25.0% |
| !!! | TTTTAGGGAATTGAAATGTA+TGG | + | chr2_4:14789265-14789284 | Msa0317200:intron | 25.0% |
| !! | GCTAATTGTTCTTATTTACT+AGG | + | chr2_4:14789469-14789488 | Msa0317200:intron | 25.0% |
| ! | TTTAAATTGAAAAACGTTGC+AGG | + | chr2_4:14790223-14790242 | Msa0317200:intron | 25.0% |
| ! | GAATGTCCATAACAATTTAA+TGG | - | chr2_4:14790475-14790494 | None:intergenic | 25.0% |
| !!! | ATTCACATTTTTTCTCTACT+TGG | + | chr2_4:14790491-14790510 | Msa0317200:intron | 25.0% |
| TTTATTTACTGTATAGGGCA+AGG | + | chr2_4:14788172-14788191 | Msa0317200:intron | 30.0% | |
| ! | AGACAGAAGAATGCTTTATT+TGG | + | chr2_4:14788195-14788214 | Msa0317200:CDS | 30.0% |
| ! | TAATTTTGTGAGATAGGTCA+AGG | + | chr2_4:14788659-14788678 | Msa0317200:intron | 30.0% |
| TACTGCAAGAAAGATATTAC+CGG | + | chr2_4:14788719-14788738 | Msa0317200:CDS | 30.0% | |
| CAACACATAAGTCAAAATCA+GGG | - | chr2_4:14788772-14788791 | None:intergenic | 30.0% | |
| TCAACACATAAGTCAAAATC+AGG | - | chr2_4:14788773-14788792 | None:intergenic | 30.0% | |
| !! | TAATCATGATTGCTTTTGTG+GGG | - | chr2_4:14788824-14788843 | None:intergenic | 30.0% |
| !! | GTAATCATGATTGCTTTTGT+GGG | - | chr2_4:14788825-14788844 | None:intergenic | 30.0% |
| !! | TGTAATCATGATTGCTTTTG+TGG | - | chr2_4:14788826-14788845 | None:intergenic | 30.0% |
| ACAAAAGCAATCATGATTAC+AGG | + | chr2_4:14788825-14788844 | Msa0317200:CDS | 30.0% | |
| CAAAAGCAATCATGATTACA+GGG | + | chr2_4:14788826-14788845 | Msa0317200:CDS | 30.0% | |
| AGACAATTTATTCTGCAACA+TGG | - | chr2_4:14789064-14789083 | None:intergenic | 30.0% | |
| !! | TGAAGAAATGTTGATTCTAG+AGG | + | chr2_4:14789116-14789135 | Msa0317200:CDS | 30.0% |
| TTGGTTTAAACTAATTGCGT+AGG | + | chr2_4:14789142-14789161 | Msa0317200:intron | 30.0% | |
| !! | AACAAAAAGGCATCCAATAA+AGG | + | chr2_4:14789767-14789786 | Msa0317200:CDS | 30.0% |
| ATATGAAAATCCAGTTGAGA+AGG | + | chr2_4:14790296-14790315 | Msa0317200:CDS | 30.0% | |
| ! | GAAAAAGATTCTAGAGACTA+AGG | + | chr2_4:14790434-14790453 | Msa0317200:CDS | 30.0% |
| TGGATGCCATTAAATTGTTA+TGG | + | chr2_4:14790466-14790485 | Msa0317200:intron | 30.0% | |
| ! | TTTCTGACATTTGTTGAACA+TGG | + | chr2_4:14790527-14790546 | Msa0317200:intron | 30.0% |
| AATAAGAAGCAAAGCAAACA+TGG | - | chr2_4:14790801-14790820 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTTTCTGAAACCGT+CGG | + | chr2_4:14790818-14790837 | Msa0317200:intron | 30.0% |
| TATGACATGCTCATTAAGAA+GGG | + | chr2_4:14791014-14791033 | Msa0317200:CDS | 30.0% | |
| !! | ATGATAGTTGAAAAAGCACC+TGG | - | chr2_4:14788249-14788268 | None:intergenic | 35.0% |
| GAAATGGAAGAATGCAAACA+TGG | - | chr2_4:14788370-14788389 | None:intergenic | 35.0% | |
| AAACAACAAGCAACGTGAAA+TGG | - | chr2_4:14788386-14788405 | None:intergenic | 35.0% | |
| ! | ATATGATATAGGTGTTGCCA+TGG | + | chr2_4:14788538-14788557 | Msa0317200:intron | 35.0% |
| !! | ATGTTGATTCTAGAGGTACT+TGG | + | chr2_4:14789123-14789142 | Msa0317200:intron | 35.0% |
| AACTAATTGCGTAGGAGTAA+CGG | + | chr2_4:14789150-14789169 | Msa0317200:intron | 35.0% | |
| AAATGTATGGCCTGGAAAAT+TGG | + | chr2_4:14789278-14789297 | Msa0317200:CDS | 35.0% | |
| AATGTATGGCCTGGAAAATT+GGG | + | chr2_4:14789279-14789298 | Msa0317200:CDS | 35.0% | |
| TGTTGGAACTAAGAACAAAG+AGG | + | chr2_4:14789318-14789337 | Msa0317200:CDS | 35.0% | |
| ! | GAAGTTTTACTTGAACTCTC+CGG | + | chr2_4:14789360-14789379 | Msa0317200:CDS | 35.0% |
| TTATTCGAAGCCTATCATAC+TGG | - | chr2_4:14789397-14789416 | None:intergenic | 35.0% | |
| !!! | TATATTTTAGGGTCGGATTC+TGG | + | chr2_4:14789710-14789729 | Msa0317200:intron | 35.0% |
| !!! | ATATTTTAGGGTCGGATTCT+GGG | + | chr2_4:14789711-14789730 | Msa0317200:intron | 35.0% |
| CCTTCATTTCTTGAGGAATT+TGG | - | chr2_4:14789940-14789959 | None:intergenic | 35.0% | |
| CCAAATTCCTCAAGAAATGA+AGG | + | chr2_4:14789937-14789956 | Msa0317200:CDS | 35.0% | |
| TCAGCATCATCATCATATTC+AGG | - | chr2_4:14790015-14790034 | None:intergenic | 35.0% | |
| TGAGAAATTACTCGCTGATA+TGG | + | chr2_4:14790032-14790051 | Msa0317200:CDS | 35.0% | |
| GTTTAATGACAATGACACTG+AGG | + | chr2_4:14790056-14790075 | Msa0317200:CDS | 35.0% | |
| AGCTGAAGCAGATATATATC+TGG | + | chr2_4:14790585-14790604 | Msa0317200:CDS | 35.0% | |
| TCTGGCAAATAAGAGAAGAA+AGG | + | chr2_4:14790603-14790622 | Msa0317200:CDS | 35.0% | |
| TGATAGAAAATTACAGCCGA+CGG | - | chr2_4:14790837-14790856 | None:intergenic | 35.0% | |
| CTTGAACATTTGATGAGCAT+CGG | - | chr2_4:14790964-14790983 | None:intergenic | 35.0% | |
| TTGATCCCATGAAAATTGAC+AGG | + | chr2_4:14790988-14791007 | Msa0317200:CDS | 35.0% | |
| TGATCCCATGAAAATTGACA+GGG | + | chr2_4:14790989-14791008 | Msa0317200:CDS | 35.0% | |
| ! | TACACCCTGTCAATTTTCAT+GGG | - | chr2_4:14790996-14791015 | None:intergenic | 35.0% |
| ! | ATACACCCTGTCAATTTTCA+TGG | - | chr2_4:14790997-14791016 | None:intergenic | 35.0% |
| GTATGACATGCTCATTAAGA+AGG | + | chr2_4:14791013-14791032 | Msa0317200:CDS | 35.0% | |
| ! | ATGCTCATTAAGAAGGGTAT+TGG | + | chr2_4:14791020-14791039 | Msa0317200:CDS | 35.0% |
| ! | ACACTTGATACGGATTACTC+CGG | - | chr2_4:14788741-14788760 | None:intergenic | 40.0% |
| TAAGTCAAAATCAGGGCACA+CGG | - | chr2_4:14788765-14788784 | None:intergenic | 40.0% | |
| ! | TGTGTTGAGTGCTTTTCTGT+TGG | + | chr2_4:14788785-14788804 | Msa0317200:CDS | 40.0% |
| CAATCATGATTACAGGGTCA+TGG | + | chr2_4:14788832-14788851 | Msa0317200:CDS | 40.0% | |
| TCTCTCGATCAAGACATCAA+AGG | - | chr2_4:14788885-14788904 | None:intergenic | 40.0% | |
| TGATGTCTTGATCGAGAGAA+AGG | + | chr2_4:14788886-14788905 | Msa0317200:intron | 40.0% | |
| ! | TAAGAACAAAGAGGCATGCA+TGG | + | chr2_4:14789327-14789346 | Msa0317200:CDS | 40.0% |
| AAGCCTATCATACTGGAAGA+GGG | - | chr2_4:14789390-14789409 | None:intergenic | 40.0% | |
| CAGAGAAGAACTTCTTGCAA+CGG | + | chr2_4:14789517-14789536 | Msa0317200:CDS | 40.0% | |
| TGTCAATGGCAAAAGGACTA+GGG | - | chr2_4:14789881-14789900 | None:intergenic | 40.0% | |
| GAGAATCTGTCAATGGCAAA+AGG | - | chr2_4:14789888-14789907 | None:intergenic | 40.0% | |
| ! | TCCTTTGGAGAATCTGTCAA+TGG | - | chr2_4:14789895-14789914 | None:intergenic | 40.0% |
| TTGACAGATTCTCCAAAGGA+CGG | + | chr2_4:14789895-14789914 | Msa0317200:intron | 40.0% | |
| AAGAAATGAAGGCCGTACTT+TGG | + | chr2_4:14789948-14789967 | Msa0317200:CDS | 40.0% | |
| !!! | TCTTTTCGGGTTATAACCAC+TGG | - | chr2_4:14789980-14789999 | None:intergenic | 40.0% |
| TGGTTATAACCCGAAAAGAC+AGG | + | chr2_4:14789981-14790000 | Msa0317200:CDS | 40.0% | |
| ! | GATCGAATTCCTGTCTTTTC+GGG | - | chr2_4:14789993-14790012 | None:intergenic | 40.0% |
| ! | GGATCGAATTCCTGTCTTTT+CGG | - | chr2_4:14789994-14790013 | None:intergenic | 40.0% |
| TAATGACAATGACACTGAGG+AGG | + | chr2_4:14790059-14790078 | Msa0317200:CDS | 40.0% | |
| GGTGTTAAATCCTTCTCAAC+TGG | - | chr2_4:14790309-14790328 | None:intergenic | 40.0% | |
| GCATGAACACGTCATATTTC+CGG | - | chr2_4:14790350-14790369 | None:intergenic | 40.0% | |
| GTTCATGCGCTTTCATACTA+AGG | + | chr2_4:14790362-14790381 | Msa0317200:CDS | 40.0% | |
| !! | CAGTTCTGAGCAATTCATCA+TGG | - | chr2_4:14790392-14790411 | None:intergenic | 40.0% |
| ! | AGAGACTAAGGTTTGAGACA+TGG | + | chr2_4:14790446-14790465 | Msa0317200:intron | 40.0% |
| AAGAGAAGAAAGGAAGCTGA+AGG | + | chr2_4:14790613-14790632 | Msa0317200:CDS | 40.0% | |
| TTCGGAACCTTGTGATTGTT+CGG | - | chr2_4:14790676-14790695 | None:intergenic | 40.0% | |
| ! | GTCGGCTGTAATTTTCTATC+AGG | + | chr2_4:14790836-14790855 | Msa0317200:intron | 40.0% |
| CTCTTGCATCTTCAGATACA+CGG | - | chr2_4:14790898-14790917 | None:intergenic | 40.0% | |
| CAACGCGGAAAGTTACACAT+AGG | - | chr2_4:14788432-14788451 | None:intergenic | 45.0% | |
| CTATGTGTAACTTTCCGCGT+TGG | + | chr2_4:14788430-14788449 | Msa0317200:intron | 45.0% | |
| GCGCGTTTCTTCACTTTGTT+TGG | + | chr2_4:14788469-14788488 | Msa0317200:intron | 45.0% | |
| AAGGAGCAGGTGAAGCAAAA+TGG | + | chr2_4:14788678-14788697 | Msa0317200:CDS | 45.0% | |
| AGGAGCAGGTGAAGCAAAAT+GGG | + | chr2_4:14788679-14788698 | Msa0317200:CDS | 45.0% | |
| GGGAATTGAAATGTATGGCC+TGG | + | chr2_4:14789270-14789289 | Msa0317200:intron | 45.0% | |
| ! | CTACTTCTGCCCAATTTTCC+AGG | - | chr2_4:14789291-14789310 | None:intergenic | 45.0% |
| CTTCCCTCTTCCAGTATGAT+AGG | + | chr2_4:14789384-14789403 | Msa0317200:intron | 45.0% | |
| GAAGCCTATCATACTGGAAG+AGG | - | chr2_4:14789391-14789410 | None:intergenic | 45.0% | |
| TAGGACATGTCTCATGCTGT+TGG | + | chr2_4:14789488-14789507 | Msa0317200:intron | 45.0% | |
| AGGACATGTCTCATGCTGTT+GGG | + | chr2_4:14789489-14789508 | Msa0317200:intron | 45.0% | |
| AACTTCTTGCAACGGCGAAA+GGG | + | chr2_4:14789525-14789544 | Msa0317200:CDS | 45.0% | |
| ! | TGCAGCTGGTGCTAACAAAA+AGG | + | chr2_4:14789754-14789773 | Msa0317200:CDS | 45.0% |
| !! | AAAGGCATCCAATAAAGGCC+CGG | + | chr2_4:14789772-14789791 | Msa0317200:CDS | 45.0% |
| !!! | TCCAGCAAACTAGCTTTTCC+CGG | - | chr2_4:14789794-14789813 | None:intergenic | 45.0% |
| !! | GGAAAAGCTAGTTTGCTGGA+AGG | + | chr2_4:14789794-14789813 | Msa0317200:CDS | 45.0% |
| CTGTCAATGGCAAAAGGACT+AGG | - | chr2_4:14789882-14789901 | None:intergenic | 45.0% | |
| GCCATTGACAGATTCTCCAA+AGG | + | chr2_4:14789891-14789910 | Msa0317200:intron | 45.0% | |
| ! | TCTCCAAAGGACGGAGATTT+TGG | + | chr2_4:14789904-14789923 | Msa0317200:CDS | 45.0% |
| AGTACGGCCTTCATTTCTTG+AGG | - | chr2_4:14789947-14789966 | None:intergenic | 45.0% | |
| !! | CACTGGCTTCAACCAAAGTA+CGG | - | chr2_4:14789963-14789982 | None:intergenic | 45.0% |
| TGAGAAGGATTTAACACCCG+AGG | + | chr2_4:14790311-14790330 | Msa0317200:CDS | 45.0% | |
| GGATTTAACACCCGAGGAAA+AGG | + | chr2_4:14790317-14790336 | Msa0317200:CDS | 45.0% | |
| ! | CATTTGTTGAACATGGCTGC+AGG | + | chr2_4:14790534-14790553 | Msa0317200:intron | 45.0% |
| TATCTGCTTCAGCTGAAGTG+CGG | - | chr2_4:14790579-14790598 | None:intergenic | 45.0% | |
| !! | GGCAAGAGAAAGTACTCATG+TGG | + | chr2_4:14790648-14790667 | Msa0317200:CDS | 45.0% |
| TCGGAACCTTGTGATTGTTC+GGG | - | chr2_4:14790675-14790694 | None:intergenic | 45.0% | |
| CCTGCAGACATCAATGCATT+CGG | - | chr2_4:14790694-14790713 | None:intergenic | 45.0% | |
| ! | CGAATGCATTGATGTCTGCA+GGG | + | chr2_4:14790692-14790711 | Msa0317200:CDS | 45.0% |
| TTGACAGCACTTGAAGTAGC+TGG | - | chr2_4:14790718-14790737 | None:intergenic | 45.0% | |
| AACGTTTGTGCTGCGAGTTA+AGG | + | chr2_4:14790862-14790881 | Msa0317200:CDS | 45.0% | |
| TGCATCTTCAGATACACGGT+TGG | - | chr2_4:14790894-14790913 | None:intergenic | 45.0% | |
| CGTGTATCTGAAGATGCAAG+AGG | + | chr2_4:14790896-14790915 | Msa0317200:CDS | 45.0% | |
| ! | CAGCAATCATTTGTACCGAC+AGG | - | chr2_4:14790923-14790942 | None:intergenic | 45.0% |
| CTGTCGGTACAAATGATTGC+TGG | + | chr2_4:14790921-14790940 | Msa0317200:CDS | 45.0% | |
| AAGTGAAGAAACGCGCACGA+TGG | - | chr2_4:14788465-14788484 | None:intergenic | 50.0% | |
| TGTGAGATAGGTCAAGGAGC+AGG | + | chr2_4:14788665-14788684 | Msa0317200:intron | 50.0% | |
| TTCATCTGCACTCCAGTCTG+GGG | - | chr2_4:14789100-14789119 | None:intergenic | 50.0% | |
| CTTCATCTGCACTCCAGTCT+GGG | - | chr2_4:14789101-14789120 | None:intergenic | 50.0% | |
| TCTTCATCTGCACTCCAGTC+TGG | - | chr2_4:14789102-14789121 | None:intergenic | 50.0% | |
| GTAGGAGTAACGGTGACTAG+TGG | + | chr2_4:14789160-14789179 | Msa0317200:intron | 50.0% | |
| GCAGAAGTAGCTGAGCATGT+TGG | + | chr2_4:14789301-14789320 | Msa0317200:CDS | 50.0% | |
| CATACTGGAAGAGGGAAGAC+CGG | - | chr2_4:14789382-14789401 | None:intergenic | 50.0% | |
| GAACTTCTTGCAACGGCGAA+AGG | + | chr2_4:14789524-14789543 | Msa0317200:CDS | 50.0% | |
| ! | AAGGCATCCAATAAAGGCCC+GGG | + | chr2_4:14789773-14789792 | Msa0317200:CDS | 50.0% |
| ! | AGCTTTTCCCGGGCCTTTAT+TGG | - | chr2_4:14789783-14789802 | None:intergenic | 50.0% |
| !!! | CCAGCAAACTAGCTTTTCCC+GGG | - | chr2_4:14789793-14789812 | None:intergenic | 50.0% |
| CCTCCAAAATCTCCGTCCTT+TGG | - | chr2_4:14789910-14789929 | None:intergenic | 50.0% | |
| ! | CCAAAGGACGGAGATTTTGG+AGG | + | chr2_4:14789907-14789926 | Msa0317200:CDS | 50.0% |
| CGTACTTTGGTTGAAGCCAG+TGG | + | chr2_4:14789961-14789980 | Msa0317200:CDS | 50.0% | |
| ! | CGGCATATTGCCTTTTCCTC+GGG | - | chr2_4:14790330-14790349 | None:intergenic | 50.0% |
| ! | CCGGCATATTGCCTTTTCCT+CGG | - | chr2_4:14790331-14790350 | None:intergenic | 50.0% |
| CCGAGGAAAAGGCAATATGC+CGG | + | chr2_4:14790328-14790347 | Msa0317200:CDS | 50.0% | |
| TGTGGTCCCGAACAATCACA+AGG | + | chr2_4:14790666-14790685 | Msa0317200:CDS | 50.0% | |
| ! | CCGAATGCATTGATGTCTGC+AGG | + | chr2_4:14790691-14790710 | Msa0317200:CDS | 50.0% |
| GAAGATGCAAGAGGACCTGT+CGG | + | chr2_4:14790905-14790924 | Msa0317200:CDS | 50.0% | |
| !! | GAATTTGGTGCTGCTGCTCC+AGG | + | chr2_4:14788228-14788247 | Msa0317200:CDS | 55.0% |
| !! | GATGGTGGACAGTTCCAACG+CGG | - | chr2_4:14788447-14788466 | None:intergenic | 55.0% |
| TGAAGAAACGCGCACGATGG+TGG | - | chr2_4:14788462-14788481 | None:intergenic | 55.0% | |
| GGCACACGGCACACTTGATA+CGG | - | chr2_4:14788751-14788770 | None:intergenic | 55.0% | |
| TTCCTCTCATCTCCCCAGAC+TGG | + | chr2_4:14789085-14789104 | Msa0317200:CDS | 55.0% | |
| TCTTGCAACGGCGAAAGGGA+AGG | + | chr2_4:14789529-14789548 | Msa0317200:CDS | 55.0% | |
| CTTGCAACGGCGAAAGGGAA+GGG | + | chr2_4:14789530-14789549 | Msa0317200:CDS | 55.0% | |
| ! | GCAGCATGTGTGTTGACCGA+GGG | - | chr2_4:14789737-14789756 | None:intergenic | 55.0% |
| ! | TGCAGCATGTGTGTTGACCG+AGG | - | chr2_4:14789738-14789757 | None:intergenic | 55.0% |
| GTCAACACACATGCTGCAGC+TGG | + | chr2_4:14789740-14789759 | Msa0317200:CDS | 55.0% | |
| ! | CCCGGGAAAAGCTAGTTTGC+TGG | + | chr2_4:14789790-14789809 | Msa0317200:CDS | 55.0% |
| CTGCAGGAAGCAATTGCTGC+TGG | + | chr2_4:14790550-14790569 | Msa0317200:intron | 55.0% | |
| CTCCAGTCTGGGGAGATGAG+AGG | - | chr2_4:14789090-14789109 | None:intergenic | 60.0% | |
| ACGGCGAAAGGGAAGGGTGA+CGG | + | chr2_4:14789536-14789555 | Msa0317200:CDS | 60.0% | |
| ! | GGGAAGGGTGACGGCAAGAA+AGG | + | chr2_4:14789545-14789564 | Msa0317200:CDS | 60.0% |
| ! | GGCTCGATGAAAGAGAGCGC+AGG | + | chr2_4:14790244-14790263 | Msa0317200:intron | 60.0% |
| AAGCTGAAGGACGTGCTCGC+AGG | + | chr2_4:14790626-14790645 | Msa0317200:CDS | 60.0% | |
| AGCTGAAGGACGTGCTCGCA+GGG | + | chr2_4:14790627-14790646 | Msa0317200:CDS | 60.0% | |
| AGGGTCGGATTCTGGGCCCT+CGG | + | chr2_4:14789718-14789737 | Msa0317200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14788160 | 14791052 | 14788160 | ID=Msa0317200;Name=Msa0317200 |
| chr2_4 | mRNA | 14788160 | 14791052 | 14788160 | ID=Msa0317200-mRNA-1;Parent=Msa0317200;Name=Msa0317200-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.81|1|1|11|0|486 |
| chr2_4 | exon | 14788160 | 14788164 | 14788160 | ID=Msa0317200-mRNA-1:exon:5553;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14788188 | 14788249 | 14788188 | ID=Msa0317200-mRNA-1:exon:5554;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14788675 | 14788853 | 14788675 | ID=Msa0317200-mRNA-1:exon:5555;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14789072 | 14789137 | 14789072 | ID=Msa0317200-mRNA-1:exon:5556;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14789271 | 14789396 | 14789271 | ID=Msa0317200-mRNA-1:exon:5557;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14789491 | 14789566 | 14789491 | ID=Msa0317200-mRNA-1:exon:5558;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14789720 | 14789815 | 14789720 | ID=Msa0317200-mRNA-1:exon:5559;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14789902 | 14790124 | 14789902 | ID=Msa0317200-mRNA-1:exon:5560;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14790245 | 14790455 | 14790245 | ID=Msa0317200-mRNA-1:exon:5561;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14790556 | 14790777 | 14790556 | ID=Msa0317200-mRNA-1:exon:5562;Parent=Msa0317200-mRNA-1 |
| chr2_4 | exon | 14790858 | 14791052 | 14790858 | ID=Msa0317200-mRNA-1:exon:5563;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14788160 | 14788164 | 14788160 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14788188 | 14788249 | 14788188 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14788675 | 14788853 | 14788675 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14789072 | 14789137 | 14789072 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14789271 | 14789396 | 14789271 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14789491 | 14789566 | 14789491 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14789720 | 14789815 | 14789720 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14789902 | 14790124 | 14789902 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14790245 | 14790455 | 14790245 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14790556 | 14790777 | 14790556 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| chr2_4 | CDS | 14790858 | 14791052 | 14790858 | ID=Msa0317200-mRNA-1:cds;Parent=Msa0317200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
