Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317380 | XP_039685680.1 | 83.605 | 799 | 111 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317380 | sp|Q9SZL8|FRS5_ARATH | 26.258 | 636 | 399 | 12 | 32 | 665 | 70 | 637 | 1.43e-64 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0317380 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317380 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 1.12e-102 | 314 |
| Msa0317380 | MtrunA17_Chr2g0324011 | 30.346 | 636 | 365 | 13 | 36 | 665 | 8 | 571 | 7.97e-98 | 316 |
| Msa0317380 | MtrunA17_Chr3g0082121 | 30.825 | 691 | 390 | 17 | 41 | 727 | 49 | 655 | 3.90e-95 | 312 |
| Msa0317380 | MtrunA17_Chr1g0202341 | 29.134 | 635 | 369 | 17 | 34 | 662 | 50 | 609 | 3.84e-77 | 263 |
| Msa0317380 | MtrunA17_Chr8g0363841 | 28.571 | 630 | 375 | 14 | 40 | 665 | 22 | 580 | 9.79e-73 | 251 |
| Msa0317380 | MtrunA17_Chr1g0203721 | 26.236 | 728 | 425 | 21 | 40 | 739 | 68 | 711 | 5.00e-69 | 244 |
| Msa0317380 | MtrunA17_Chr2g0296781 | 27.466 | 659 | 393 | 19 | 39 | 689 | 1 | 582 | 6.76e-65 | 230 |
| Msa0317380 | MtrunA17_Chr5g0448761 | 25.938 | 640 | 402 | 13 | 31 | 665 | 56 | 628 | 4.55e-64 | 229 |
| Msa0317380 | MtrunA17_Chr6g0458391 | 26.424 | 632 | 358 | 15 | 41 | 662 | 231 | 765 | 2.52e-63 | 226 |
| Msa0317380 | MtrunA17_Chr1g0164591 | 34.783 | 322 | 195 | 4 | 131 | 450 | 1 | 309 | 2.83e-61 | 209 |
| Msa0317380 | MtrunA17_Chr6g0477261 | 28.682 | 516 | 311 | 13 | 180 | 689 | 7 | 471 | 5.64e-61 | 218 |
| Msa0317380 | MtrunA17_Chr2g0287651 | 25.990 | 631 | 383 | 15 | 39 | 662 | 79 | 632 | 1.68e-57 | 211 |
| Msa0317380 | MtrunA17_Chr1g0172971 | 82.906 | 117 | 19 | 1 | 1 | 116 | 1 | 117 | 4.91e-56 | 201 |
| Msa0317380 | MtrunA17_Chr5g0441581 | 23.942 | 756 | 469 | 21 | 32 | 773 | 26 | 689 | 2.85e-55 | 202 |
| Msa0317380 | MtrunA17_Chr5g0440451 | 24.011 | 708 | 431 | 18 | 34 | 721 | 42 | 662 | 7.49e-52 | 195 |
| Msa0317380 | MtrunA17_Chr1g0207551 | 24.320 | 699 | 431 | 18 | 31 | 718 | 30 | 641 | 8.22e-52 | 194 |
| Msa0317380 | MtrunA17_Chr1g0196541 | 24.841 | 628 | 396 | 17 | 39 | 662 | 1 | 556 | 1.01e-51 | 192 |
| Msa0317380 | MtrunA17_Chr2g0329031 | 25.155 | 644 | 386 | 17 | 23 | 658 | 2 | 557 | 6.36e-51 | 191 |
| Msa0317380 | MtrunA17_Chr7g0258861 | 34.641 | 306 | 176 | 6 | 36 | 336 | 8 | 294 | 1.19e-50 | 180 |
| Msa0317380 | MtrunA17_Chr1g0198761 | 26.646 | 653 | 381 | 21 | 26 | 660 | 38 | 610 | 1.30e-50 | 190 |
| Msa0317380 | MtrunA17_Chr3g0118611 | 27.237 | 503 | 306 | 11 | 221 | 719 | 111 | 557 | 2.25e-49 | 186 |
| Msa0317380 | MtrunA17_Chr3g0080351 | 23.862 | 725 | 448 | 18 | 34 | 752 | 75 | 701 | 9.73e-47 | 179 |
| Msa0317380 | MtrunA17_Chr2g0287061 | 24.762 | 630 | 355 | 18 | 41 | 665 | 189 | 704 | 4.38e-46 | 177 |
| Msa0317380 | MtrunA17_Chr1g0203051 | 22.203 | 590 | 390 | 8 | 50 | 637 | 94 | 616 | 6.24e-46 | 174 |
| Msa0317380 | MtrunA17_Chr2g0290391 | 25.857 | 642 | 373 | 20 | 38 | 660 | 54 | 611 | 2.23e-45 | 174 |
| Msa0317380 | MtrunA17_Chr2g0276841 | 25.276 | 633 | 381 | 19 | 49 | 669 | 84 | 636 | 4.46e-44 | 170 |
| Msa0317380 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 11 | 216 | 665 | 1 | 400 | 2.24e-42 | 162 |
| Msa0317380 | MtrunA17_Chr2g0291581 | 23.567 | 628 | 397 | 13 | 38 | 662 | 74 | 621 | 3.99e-42 | 164 |
| Msa0317380 | MtrunA17_Chr2g0291591 | 25.904 | 498 | 315 | 13 | 16 | 499 | 44 | 501 | 4.28e-41 | 159 |
| Msa0317380 | MtrunA17_Chr5g0431001 | 27.716 | 451 | 281 | 12 | 40 | 473 | 66 | 488 | 1.85e-40 | 156 |
| Msa0317380 | MtrunA17_Chr6g0475591 | 91.549 | 71 | 6 | 0 | 188 | 258 | 1 | 71 | 1.86e-39 | 140 |
| Msa0317380 | MtrunA17_Chr2g0294841 | 27.174 | 460 | 286 | 14 | 41 | 482 | 51 | 479 | 4.67e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317380 | AT4G38180.1 | 26.258 | 636 | 399 | 12 | 32 | 665 | 70 | 637 | 1.45e-65 | 234 |
| Msa0317380 | AT4G15090.1 | 25.296 | 676 | 418 | 15 | 50 | 718 | 66 | 661 | 8.97e-57 | 209 |
| Msa0317380 | AT4G15090.5 | 25.296 | 676 | 418 | 15 | 50 | 718 | 66 | 661 | 8.97e-57 | 209 |
| Msa0317380 | AT4G15090.3 | 25.296 | 676 | 418 | 15 | 50 | 718 | 66 | 661 | 8.97e-57 | 209 |
| Msa0317380 | AT4G15090.2 | 25.296 | 676 | 418 | 15 | 50 | 718 | 66 | 661 | 8.97e-57 | 209 |
| Msa0317380 | AT4G15090.4 | 25.296 | 676 | 418 | 15 | 50 | 718 | 66 | 661 | 8.97e-57 | 209 |
| Msa0317380 | AT2G27110.2 | 24.444 | 720 | 432 | 18 | 4 | 719 | 23 | 634 | 1.96e-50 | 191 |
| Msa0317380 | AT2G27110.1 | 24.444 | 720 | 432 | 18 | 4 | 719 | 23 | 634 | 1.96e-50 | 191 |
| Msa0317380 | AT2G27110.3 | 26.523 | 509 | 317 | 10 | 213 | 719 | 36 | 489 | 4.16e-50 | 188 |
| Msa0317380 | AT3G06250.2 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.22e-50 | 188 |
| Msa0317380 | AT3G06250.1 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.22e-50 | 188 |
| Msa0317380 | AT3G06250.3 | 24.803 | 633 | 353 | 16 | 34 | 661 | 189 | 703 | 7.22e-50 | 188 |
| Msa0317380 | AT1G76320.3 | 24.556 | 676 | 414 | 18 | 50 | 719 | 12 | 597 | 8.65e-48 | 181 |
| Msa0317380 | AT1G76320.1 | 24.556 | 676 | 414 | 18 | 50 | 719 | 12 | 597 | 1.94e-47 | 181 |
| Msa0317380 | AT1G76320.4 | 24.556 | 676 | 414 | 18 | 50 | 719 | 12 | 597 | 1.94e-47 | 181 |
| Msa0317380 | AT1G76320.2 | 24.556 | 676 | 414 | 18 | 50 | 719 | 12 | 597 | 2.59e-47 | 180 |
| Msa0317380 | AT5G18960.2 | 23.876 | 645 | 367 | 18 | 24 | 661 | 200 | 727 | 1.23e-44 | 173 |
| Msa0317380 | AT5G18960.1 | 23.876 | 645 | 367 | 18 | 24 | 661 | 200 | 727 | 1.23e-44 | 173 |
| Msa0317380 | AT3G22170.2 | 22.815 | 675 | 413 | 17 | 34 | 696 | 69 | 647 | 2.44e-44 | 172 |
| Msa0317380 | AT3G22170.1 | 22.815 | 675 | 413 | 17 | 34 | 696 | 69 | 647 | 2.44e-44 | 172 |
| Msa0317380 | AT4G38170.1 | 25.754 | 431 | 262 | 12 | 235 | 662 | 24 | 399 | 2.19e-42 | 163 |
| Msa0317380 | AT1G10240.2 | 24.598 | 622 | 379 | 19 | 49 | 659 | 62 | 604 | 4.54e-41 | 161 |
| Msa0317380 | AT1G10240.1 | 24.598 | 622 | 379 | 19 | 49 | 659 | 62 | 604 | 4.54e-41 | 161 |
| Msa0317380 | AT5G28530.1 | 23.548 | 637 | 394 | 17 | 40 | 660 | 60 | 619 | 1.85e-39 | 156 |
| Msa0317380 | AT5G28530.3 | 23.391 | 637 | 391 | 18 | 40 | 660 | 60 | 615 | 1.13e-38 | 154 |
| Msa0317380 | AT5G28530.2 | 23.391 | 637 | 391 | 18 | 40 | 660 | 60 | 615 | 1.13e-38 | 154 |
| Msa0317380 | AT1G80010.1 | 23.944 | 639 | 391 | 22 | 41 | 662 | 101 | 661 | 1.22e-37 | 151 |
| Msa0317380 | AT2G32250.5 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 1.41e-37 | 151 |
| Msa0317380 | AT2G32250.6 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 3.07e-37 | 150 |
| Msa0317380 | AT2G32250.1 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 3.07e-37 | 150 |
| Msa0317380 | AT2G32250.3 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 3.07e-37 | 150 |
| Msa0317380 | AT2G32250.2 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 3.36e-37 | 150 |
| Msa0317380 | AT2G32250.4 | 23.333 | 750 | 433 | 23 | 1 | 743 | 8 | 622 | 3.36e-37 | 150 |
| Msa0317380 | AT2G32250.8 | 23.521 | 710 | 405 | 21 | 41 | 743 | 3 | 581 | 4.89e-37 | 149 |
| Msa0317380 | AT2G32250.7 | 23.521 | 710 | 405 | 21 | 41 | 743 | 3 | 581 | 5.20e-37 | 149 |
| Msa0317380 | AT1G52520.1 | 23.296 | 631 | 392 | 21 | 41 | 662 | 91 | 638 | 2.55e-32 | 134 |
| Msa0317380 | AT4G19990.1 | 27.612 | 268 | 187 | 4 | 219 | 483 | 106 | 369 | 5.34e-25 | 111 |
| Msa0317380 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.69e-12 | 70.9 |
| Msa0317380 | AT4G19990.3 | 27.612 | 268 | 187 | 4 | 219 | 483 | 163 | 426 | 5.54e-25 | 111 |
| Msa0317380 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.60e-12 | 71.2 |
| Msa0317380 | AT4G19990.4 | 27.612 | 268 | 187 | 4 | 219 | 483 | 163 | 426 | 5.54e-25 | 111 |
| Msa0317380 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.60e-12 | 71.2 |
| Msa0317380 | AT4G19990.5 | 27.612 | 268 | 187 | 4 | 219 | 483 | 163 | 426 | 5.72e-25 | 111 |
| Msa0317380 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 3.00e-12 | 70.9 |
| Msa0317380 | AT4G19990.7 | 27.612 | 268 | 187 | 4 | 219 | 483 | 177 | 440 | 5.95e-25 | 111 |
| Msa0317380 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 3.04e-12 | 70.9 |
| Msa0317380 | AT4G19990.6 | 27.612 | 268 | 187 | 4 | 219 | 483 | 163 | 426 | 7.65e-25 | 111 |
| Msa0317380 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 3.06e-12 | 70.9 |
| Msa0317380 | AT4G19990.2 | 27.612 | 268 | 187 | 4 | 219 | 483 | 163 | 426 | 7.65e-25 | 111 |
| Msa0317380 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 3.06e-12 | 70.9 |
Find 119 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 2_4:-15058815 | Msa0317380:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 2_4:+15057680 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_4:-15058548 | Msa0317380:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 2_4:-15059096 | Msa0317380:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 2_4:-15059619 | Msa0317380:CDS |
| TATGGTTTGAGCTTTCTTAT+TGG | 0.242296 | 2_4:+15058969 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 2_4:-15059063 | Msa0317380:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 2_4:+15057686 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 2_4:-15058251 | Msa0317380:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 2_4:-15058774 | Msa0317380:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 2_4:-15057834 | Msa0317380:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.339668 | 2_4:+15057958 | None:intergenic |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 2_4:+15058951 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_4:+15059569 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 2_4:+15057618 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 2_4:-15058515 | Msa0317380:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 2_4:-15058674 | Msa0317380:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 2_4:-15057456 | Msa0317380:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 2_4:-15057842 | Msa0317380:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_4:-15059562 | Msa0317380:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 2_4:-15058506 | Msa0317380:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_4:-15059570 | Msa0317380:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 2_4:-15060483 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 2_4:-15058675 | Msa0317380:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 2_4:+15060099 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 2_4:-15057694 | Msa0317380:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_4:+15057704 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 2_4:-15057809 | Msa0317380:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 2_4:+15060338 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 2_4:-15060328 | Msa0317380:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 2_4:-15058126 | Msa0317380:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 2_4:+15058203 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 2_4:-15060257 | Msa0317380:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 2_4:-15058168 | Msa0317380:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 2_4:+15058202 | None:intergenic |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 2_4:-15060040 | Msa0317380:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 2_4:-15060008 | Msa0317380:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_4:-15060057 | Msa0317380:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 2_4:+15058025 | None:intergenic |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 2_4:-15059892 | Msa0317380:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 2_4:-15060403 | Msa0317380:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 2_4:-15058884 | Msa0317380:CDS |
| CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 2_4:+15058372 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 2_4:-15058125 | Msa0317380:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 2_4:-15058720 | Msa0317380:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 2_4:-15060208 | Msa0317380:CDS |
| TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 2_4:-15058358 | Msa0317380:CDS |
| GCTGTCTGTGAGCCATCTGT+TGG | 0.470881 | 2_4:-15057734 | Msa0317380:CDS |
| CTGTCTGTGAGCCATCTGTT+GGG | 0.478819 | 2_4:-15057733 | Msa0317380:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 2_4:+15060063 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 2_4:-15060270 | Msa0317380:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 2_4:-15059779 | Msa0317380:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 2_4:-15060214 | Msa0317380:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 2_4:+15059083 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 2_4:-15058773 | Msa0317380:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_4:-15058534 | Msa0317380:CDS |
| CGCAAACACATGTAGAAAGC+TGG | 0.494885 | 2_4:+15057891 | None:intergenic |
| GACTCGTCAAAAGGAGATAG+TGG | 0.495680 | 2_4:-15059770 | Msa0317380:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 2_4:+15058454 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.503682 | 2_4:+15059674 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 2_4:-15058687 | Msa0317380:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 2_4:-15058189 | Msa0317380:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 2_4:+15059808 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 2_4:-15058669 | Msa0317380:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 2_4:+15058209 | None:intergenic |
| CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 2_4:+15058377 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 2_4:+15058566 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 2_4:-15060004 | Msa0317380:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 2_4:+15059964 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 2_4:-15058188 | Msa0317380:CDS |
| TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 2_4:-15058357 | Msa0317380:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 2_4:-15057628 | Msa0317380:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 2_4:-15057968 | Msa0317380:CDS |
| CAGCTGGTTTGAAAATGACT+CGG | 0.538169 | 2_4:-15058636 | Msa0317380:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 2_4:-15060163 | Msa0317380:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 2_4:+15058571 | None:intergenic |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 2_4:-15060174 | Msa0317380:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 2_4:-15060338 | Msa0317380:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_4:-15060162 | Msa0317380:CDS |
| CGTCAAAAGGAGATAGTGGC+TGG | 0.549037 | 2_4:-15059766 | Msa0317380:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 2_4:-15059860 | Msa0317380:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 2_4:+15058938 | None:intergenic |
| TACATGTGTTTGCGCAGATG+CGG | 0.559018 | 2_4:-15057882 | Msa0317380:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 2_4:-15059712 | Msa0317380:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 2_4:-15060379 | Msa0317380:CDS |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 2_4:-15059839 | Msa0317380:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 2_4:+15058453 | None:intergenic |
| ATGTGTTTGCGCAGATGCGG+AGG | 0.585249 | 2_4:-15057879 | Msa0317380:CDS |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 2_4:-15057603 | Msa0317380:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 2_4:+15058432 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 2_4:-15057841 | Msa0317380:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 2_4:-15058952 | Msa0317380:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 2_4:-15057846 | Msa0317380:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 2_4:-15057541 | Msa0317380:three_prime_UTR |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.595102 | 2_4:+15057722 | None:intergenic |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 2_4:+15057766 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 2_4:-15058219 | Msa0317380:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 2_4:-15057584 | Msa0317380:exon |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 2_4:-15059847 | Msa0317380:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 2_4:-15058456 | Msa0317380:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 2_4:-15058273 | Msa0317380:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 2_4:-15060414 | Msa0317380:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 2_4:+15058718 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 2_4:-15058272 | Msa0317380:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 2_4:+15060114 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 2_4:-15059844 | Msa0317380:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 2_4:-15057585 | Msa0317380:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 2_4:+15058204 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 2_4:-15058883 | Msa0317380:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 2_4:-15059859 | Msa0317380:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_4:-15058533 | Msa0317380:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 2_4:-15060005 | Msa0317380:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 2_4:+15057983 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.646287 | 2_4:-15058956 | Msa0317380:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 2_4:+15058412 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 2_4:-15059853 | Msa0317380:CDS |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 2_4:-15057857 | Msa0317380:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 2_4:+15058107 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 2_4:-15058124 | Msa0317380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr2_4:15060354-15060373 | Msa0317380:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr2_4:15057638-15057657 | Msa0317380:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr2_4:15057694-15057713 | Msa0317380:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr2_4:15057900-15057919 | Msa0317380:CDS | 20.0% |
| !!! | AAGACATATCTAGTATTTTT+TGG | - | chr2_4:15058251-15058270 | Msa0317380:CDS | 20.0% |
| !!! | AGACATATCTAGTATTTTTT+GGG | - | chr2_4:15058252-15058271 | Msa0317380:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr2_4:15058493-15058512 | Msa0317380:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr2_4:15058521-15058540 | Msa0317380:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr2_4:15059163-15059182 | Msa0317380:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr2_4:15060452-15060471 | Msa0317380:five_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr2_4:15057529-15057548 | Msa0317380:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr2_4:15057690-15057709 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr2_4:15057700-15057719 | Msa0317380:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr2_4:15057903-15057922 | Msa0317380:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr2_4:15057904-15057923 | Msa0317380:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr2_4:15058016-15058035 | Msa0317380:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr2_4:15058338-15058357 | Msa0317380:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr2_4:15058364-15058383 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr2_4:15058411-15058430 | Msa0317380:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr2_4:15058513-15058532 | Msa0317380:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr2_4:15058783-15058802 | Msa0317380:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr2_4:15059001-15059020 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr2_4:15059093-15059112 | Msa0317380:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr2_4:15059167-15059186 | Msa0317380:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr2_4:15059360-15059379 | Msa0317380:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr2_4:15059499-15059518 | None:intergenic | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | + | chr2_4:15059534-15059553 | None:intergenic | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | - | chr2_4:15059534-15059553 | Msa0317380:intron | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | - | chr2_4:15059594-15059613 | Msa0317380:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr2_4:15059635-15059654 | Msa0317380:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr2_4:15059636-15059655 | Msa0317380:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr2_4:15060253-15060272 | Msa0317380:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr2_4:15060254-15060273 | Msa0317380:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr2_4:15057573-15057592 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr2_4:15057570-15057589 | Msa0317380:exon | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr2_4:15057580-15057599 | Msa0317380:exon | 30.0% | |
| TGTTATGCTTGTAACAAAGA+AGG | - | chr2_4:15057734-15057753 | Msa0317380:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr2_4:15057745-15057764 | Msa0317380:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr2_4:15057746-15057765 | Msa0317380:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr2_4:15057835-15057854 | Msa0317380:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr2_4:15057868-15057887 | Msa0317380:CDS | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr2_4:15057947-15057966 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr2_4:15058049-15058068 | Msa0317380:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr2_4:15058093-15058112 | Msa0317380:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr2_4:15058103-15058122 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr2_4:15058217-15058236 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr2_4:15058289-15058308 | Msa0317380:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr2_4:15058342-15058361 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr2_4:15058346-15058365 | Msa0317380:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr2_4:15058425-15058444 | Msa0317380:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr2_4:15058450-15058469 | Msa0317380:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr2_4:15058551-15058570 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr2_4:15058584-15058603 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | - | chr2_4:15058742-15058761 | Msa0317380:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr2_4:15058828-15058847 | None:intergenic | 30.0% | |
| TATGGTTTGAGCTTTCTTAT+TGG | + | chr2_4:15058942-15058961 | None:intergenic | 30.0% | |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr2_4:15058992-15059011 | Msa0317380:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr2_4:15059004-15059023 | Msa0317380:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr2_4:15059049-15059068 | Msa0317380:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr2_4:15059134-15059153 | Msa0317380:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr2_4:15059135-15059154 | Msa0317380:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr2_4:15059345-15059364 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr2_4:15059479-15059498 | None:intergenic | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | + | chr2_4:15059539-15059558 | None:intergenic | 30.0% | |
| !! | CTTCAAATACTATTTTGAGG+AGG | - | chr2_4:15059537-15059556 | Msa0317380:intron | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr2_4:15059657-15059676 | Msa0317380:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr2_4:15059707-15059726 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr2_4:15059708-15059727 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr2_4:15059719-15059738 | Msa0317380:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr2_4:15059720-15059739 | Msa0317380:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr2_4:15059816-15059835 | Msa0317380:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr2_4:15059826-15059845 | Msa0317380:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr2_4:15059884-15059903 | Msa0317380:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr2_4:15060051-15060070 | Msa0317380:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr2_4:15060099-15060118 | Msa0317380:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr2_4:15060207-15060226 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr2_4:15060214-15060233 | Msa0317380:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr2_4:15060225-15060244 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr2_4:15060323-15060342 | Msa0317380:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr2_4:15060367-15060386 | Msa0317380:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr2_4:15060385-15060404 | Msa0317380:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr2_4:15057466-15057485 | Msa0317380:three_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr2_4:15057494-15057513 | Msa0317380:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr2_4:15057651-15057670 | Msa0317380:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr2_4:15057771-15057790 | Msa0317380:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr2_4:15057812-15057831 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr2_4:15057829-15057848 | Msa0317380:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr2_4:15057834-15057853 | Msa0317380:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr2_4:15058048-15058067 | Msa0317380:CDS | 35.0% | |
| !!! | TCTAGTATTTTTTGGGCAGA+TGG | - | chr2_4:15058259-15058278 | Msa0317380:CDS | 35.0% |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr2_4:15058845-15058864 | Msa0317380:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr2_4:15058888-15058907 | Msa0317380:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr2_4:15059017-15059036 | Msa0317380:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr2_4:15059221-15059240 | Msa0317380:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr2_4:15059234-15059253 | Msa0317380:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr2_4:15059304-15059323 | Msa0317380:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr2_4:15059374-15059393 | Msa0317380:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr2_4:15059375-15059394 | Msa0317380:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr2_4:15059709-15059728 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr2_4:15059829-15059848 | Msa0317380:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr2_4:15059886-15059905 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr2_4:15059887-15059906 | Msa0317380:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr2_4:15059940-15059959 | Msa0317380:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr2_4:15060153-15060172 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr2_4:15060280-15060299 | Msa0317380:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr2_4:15060305-15060324 | Msa0317380:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr2_4:15060324-15060343 | Msa0317380:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr2_4:15057505-15057524 | Msa0317380:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr2_4:15057785-15057804 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr2_4:15058055-15058074 | Msa0317380:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr2_4:15058129-15058148 | Msa0317380:CDS | 40.0% | |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr2_4:15058431-15058450 | Msa0317380:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr2_4:15058678-15058697 | Msa0317380:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr2_4:15058682-15058701 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr2_4:15058812-15058831 | Msa0317380:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr2_4:15058952-15058971 | Msa0317380:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr2_4:15059193-15059212 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr2_4:15059233-15059252 | Msa0317380:intron | 40.0% |
| !! | CAGCTGGTTTGAAAATGACT+CGG | - | chr2_4:15059272-15059291 | Msa0317380:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr2_4:15059340-15059359 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr2_4:15059393-15059412 | Msa0317380:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr2_4:15059402-15059421 | Msa0317380:intron | 40.0% |
| TTTGAGGAGGACACAACAAA+AGG | - | chr2_4:15059550-15059569 | Msa0317380:intron | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | - | chr2_4:15059551-15059570 | Msa0317380:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr2_4:15059673-15059692 | Msa0317380:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr2_4:15059782-15059801 | Msa0317380:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr2_4:15059783-15059802 | Msa0317380:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr2_4:15059928-15059947 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr2_4:15059953-15059972 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr2_4:15060062-15060081 | Msa0317380:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr2_4:15060145-15060164 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr2_4:15060231-15060250 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr2_4:15060293-15060312 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr2_4:15057797-15057816 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr2_4:15057839-15057858 | Msa0317380:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr2_4:15057848-15057867 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr2_4:15057851-15057870 | Msa0317380:CDS | 45.0% |
| GACTCGTCAAAAGGAGATAG+TGG | - | chr2_4:15058138-15058157 | Msa0317380:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr2_4:15058196-15058215 | Msa0317380:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr2_4:15058237-15058256 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr2_4:15058564-15058583 | Msa0317380:CDS | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr2_4:15059188-15059207 | Msa0317380:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr2_4:15059239-15059258 | Msa0317380:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr2_4:15059256-15059275 | Msa0317380:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr2_4:15059452-15059471 | Msa0317380:intron | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr2_4:15059689-15059708 | Msa0317380:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr2_4:15059702-15059721 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr2_4:15059784-15059803 | Msa0317380:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr2_4:15059804-15059823 | None:intergenic | 45.0% | |
| CGCAAACACATGTAGAAAGC+TGG | + | chr2_4:15060020-15060039 | None:intergenic | 45.0% | |
| TACATGTGTTTGCGCAGATG+CGG | - | chr2_4:15060026-15060045 | Msa0317380:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr2_4:15060074-15060093 | Msa0317380:CDS | 45.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr2_4:15058061-15058080 | Msa0317380:CDS | 50.0% |
| ! | CGTCAAAAGGAGATAGTGGC+TGG | - | chr2_4:15058142-15058161 | Msa0317380:CDS | 50.0% |
| ACCATATACACAGACCAGGC+TGG | - | chr2_4:15058956-15058975 | Msa0317380:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr2_4:15058960-15058979 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr2_4:15059024-15059043 | Msa0317380:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr2_4:15059025-15059044 | Msa0317380:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr2_4:15059457-15059476 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr2_4:15059740-15059759 | Msa0317380:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr2_4:15060067-15060086 | Msa0317380:CDS | 50.0% | |
| CTGTCTGTGAGCCATCTGTT+GGG | - | chr2_4:15060175-15060194 | Msa0317380:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr2_4:15060189-15060208 | None:intergenic | 50.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr2_4:15058064-15058083 | Msa0317380:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr2_4:15058973-15058992 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr2_4:15059458-15059477 | None:intergenic | 55.0% | |
| ATGTGTTTGCGCAGATGCGG+AGG | - | chr2_4:15060029-15060048 | Msa0317380:CDS | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr2_4:15060066-15060085 | Msa0317380:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr2_4:15060080-15060099 | Msa0317380:CDS | 55.0% | |
| GCTGTCTGTGAGCCATCTGT+TGG | - | chr2_4:15060174-15060193 | Msa0317380:CDS | 55.0% | |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr2_4:15058069-15058088 | Msa0317380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15057439 | 15060491 | 15057439 | ID=Msa0317380;Name=Msa0317380 |
| chr2_4 | mRNA | 15057439 | 15060491 | 15057439 | ID=Msa0317380-mRNA-1;Parent=Msa0317380;Name=Msa0317380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|2|150|800 |
| chr2_4 | exon | 15057439 | 15059108 | 15057439 | ID=Msa0317380-mRNA-1:exon:5638;Parent=Msa0317380-mRNA-1 |
| chr2_4 | exon | 15059563 | 15060491 | 15059563 | ID=Msa0317380-mRNA-1:exon:5637;Parent=Msa0317380-mRNA-1 |
| chr2_4 | five_prime_UTR | 15060446 | 15060491 | 15060446 | ID=Msa0317380-mRNA-1:five_prime_utr;Parent=Msa0317380-mRNA-1 |
| chr2_4 | CDS | 15059563 | 15060445 | 15059563 | ID=Msa0317380-mRNA-1:cds;Parent=Msa0317380-mRNA-1 |
| chr2_4 | CDS | 15057589 | 15059108 | 15057589 | ID=Msa0317380-mRNA-1:cds;Parent=Msa0317380-mRNA-1 |
| chr2_4 | three_prime_UTR | 15057439 | 15057588 | 15057439 | ID=Msa0317380-mRNA-1:three_prime_utr;Parent=Msa0317380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
