Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318890 | AES64817.2 | 90.575 | 626 | 48 | 4 | 1 | 624 | 33 | 649 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318890 | sp|Q9FX31|HDG11_ARATH | 35.810 | 673 | 370 | 17 | 2 | 622 | 51 | 713 | 7.77e-127 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318890 | G7IKY6 | 90.575 | 626 | 48 | 4 | 1 | 624 | 33 | 649 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0318890 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318890 | MtrunA17_Chr2g0292761 | 88.319 | 565 | 41 | 5 | 62 | 624 | 1 | 542 | 0.0 | 999 |
| Msa0318890 | MtrunA17_Chr6g0481041 | 35.337 | 682 | 376 | 14 | 1 | 622 | 47 | 723 | 1.64e-136 | 416 |
| Msa0318890 | MtrunA17_Chr2g0292731 | 41.584 | 505 | 275 | 11 | 136 | 624 | 50 | 550 | 1.07e-119 | 366 |
| Msa0318890 | MtrunA17_Chr2g0292741 | 40.519 | 501 | 281 | 12 | 136 | 624 | 42 | 537 | 5.65e-113 | 348 |
| Msa0318890 | MtrunA17_Chr4g0024351 | 34.036 | 664 | 382 | 16 | 2 | 622 | 79 | 729 | 5.11e-109 | 344 |
| Msa0318890 | MtrunA17_Chr2g0322731 | 34.098 | 654 | 391 | 14 | 2 | 622 | 119 | 765 | 4.25e-105 | 335 |
| Msa0318890 | MtrunA17_Chr5g0410711 | 32.941 | 680 | 375 | 18 | 1 | 614 | 107 | 771 | 9.62e-103 | 330 |
| Msa0318890 | MtrunA17_Chr8g0350321 | 32.500 | 680 | 395 | 18 | 1 | 622 | 133 | 806 | 8.90e-102 | 327 |
| Msa0318890 | MtrunA17_Chr7g0246631 | 32.344 | 674 | 396 | 18 | 1 | 622 | 109 | 774 | 1.56e-101 | 326 |
| Msa0318890 | MtrunA17_Chr1g0203671 | 32.174 | 690 | 385 | 22 | 2 | 622 | 114 | 789 | 1.15e-93 | 305 |
| Msa0318890 | MtrunA17_Chr2g0331581 | 31.873 | 662 | 382 | 21 | 1 | 622 | 157 | 789 | 4.84e-93 | 304 |
| Msa0318890 | MtrunA17_Chr6g0472471 | 30.692 | 694 | 394 | 25 | 1 | 622 | 87 | 765 | 1.44e-88 | 291 |
| Msa0318890 | MtrunA17_Chr7g0224451 | 38.173 | 427 | 225 | 10 | 1 | 418 | 34 | 430 | 9.93e-87 | 277 |
| Msa0318890 | MtrunA17_Chr5g0394111 | 30.078 | 645 | 379 | 14 | 2 | 623 | 52 | 647 | 5.04e-81 | 268 |
| Msa0318890 | MtrunA17_Chr7g0224481 | 38.788 | 330 | 168 | 10 | 1 | 320 | 34 | 339 | 1.94e-60 | 204 |
| Msa0318890 | MtrunA17_Chr2g0292771 | 85.366 | 123 | 17 | 1 | 503 | 624 | 3 | 125 | 4.42e-58 | 191 |
| Msa0318890 | MtrunA17_Chr7g0224491 | 32.278 | 316 | 171 | 9 | 325 | 622 | 3 | 293 | 1.71e-38 | 144 |
| Msa0318890 | MtrunA17_Chr2g0304191 | 51.128 | 133 | 61 | 3 | 159 | 288 | 2 | 133 | 3.27e-32 | 121 |
| Msa0318890 | MtrunA17_Chr2g0319671 | 34.706 | 170 | 105 | 3 | 203 | 372 | 105 | 268 | 4.18e-27 | 112 |
| Msa0318890 | MtrunA17_Chr2g0319691 | 38.889 | 108 | 60 | 3 | 262 | 367 | 1 | 104 | 4.34e-15 | 73.2 |
| Msa0318890 | MtrunA17_Chr5g0419821 | 42.574 | 101 | 51 | 1 | 1 | 94 | 52 | 152 | 9.95e-15 | 72.8 |
| Msa0318890 | MtrunA17_Chr7g0224431 | 31.250 | 160 | 69 | 5 | 172 | 330 | 1 | 120 | 3.22e-13 | 66.6 |
| Msa0318890 | MtrunA17_Chr2g0292781 | 47.253 | 91 | 40 | 3 | 38 | 128 | 2 | 84 | 6.86e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318890 | AT1G73360.1 | 35.810 | 673 | 370 | 17 | 2 | 622 | 51 | 713 | 7.90e-128 | 393 |
| Msa0318890 | AT3G03260.1 | 38.381 | 667 | 354 | 21 | 2 | 624 | 42 | 695 | 2.03e-124 | 384 |
| Msa0318890 | AT1G17920.2 | 35.518 | 656 | 374 | 16 | 2 | 622 | 40 | 681 | 5.26e-119 | 369 |
| Msa0318890 | AT1G17920.1 | 35.518 | 656 | 374 | 16 | 2 | 622 | 40 | 681 | 5.26e-119 | 369 |
| Msa0318890 | AT1G34650.1 | 36.324 | 680 | 370 | 16 | 1 | 624 | 34 | 706 | 7.18e-115 | 359 |
| Msa0318890 | AT5G17320.1 | 35.242 | 681 | 371 | 20 | 2 | 622 | 45 | 715 | 8.27e-113 | 354 |
| Msa0318890 | AT1G05230.3 | 35.085 | 647 | 379 | 15 | 2 | 622 | 83 | 714 | 3.12e-109 | 345 |
| Msa0318890 | AT1G05230.8 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.4 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.9 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.10 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.7 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.11 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.2 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.6 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.5 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT1G05230.1 | 34.977 | 649 | 379 | 16 | 2 | 622 | 83 | 716 | 1.73e-107 | 340 |
| Msa0318890 | AT4G04890.2 | 34.039 | 661 | 390 | 14 | 2 | 622 | 81 | 735 | 1.05e-106 | 339 |
| Msa0318890 | AT4G04890.1 | 34.039 | 661 | 390 | 14 | 2 | 622 | 81 | 735 | 1.05e-106 | 339 |
| Msa0318890 | AT4G21750.2 | 33.431 | 685 | 384 | 15 | 2 | 622 | 81 | 757 | 1.10e-105 | 337 |
| Msa0318890 | AT4G21750.1 | 33.431 | 685 | 384 | 15 | 2 | 622 | 81 | 757 | 1.10e-105 | 337 |
| Msa0318890 | AT4G21750.3 | 33.431 | 685 | 384 | 15 | 2 | 622 | 81 | 757 | 1.10e-105 | 337 |
| Msa0318890 | AT4G21750.4 | 33.431 | 685 | 384 | 15 | 2 | 622 | 81 | 757 | 1.10e-105 | 337 |
| Msa0318890 | AT3G03260.2 | 40.281 | 499 | 264 | 13 | 2 | 474 | 42 | 532 | 2.03e-101 | 319 |
| Msa0318890 | AT3G61150.1 | 32.900 | 693 | 377 | 21 | 1 | 622 | 128 | 803 | 8.28e-101 | 325 |
| Msa0318890 | AT4G00730.1 | 32.827 | 658 | 395 | 16 | 1 | 622 | 152 | 798 | 2.73e-100 | 323 |
| Msa0318890 | AT2G32370.1 | 30.388 | 645 | 401 | 15 | 1 | 614 | 86 | 713 | 1.91e-93 | 303 |
| Msa0318890 | AT1G79840.3 | 32.362 | 652 | 383 | 23 | 1 | 622 | 61 | 684 | 1.94e-89 | 292 |
| Msa0318890 | AT1G79840.6 | 32.362 | 652 | 383 | 23 | 1 | 622 | 61 | 684 | 1.94e-89 | 292 |
| Msa0318890 | AT1G05230.12 | 34.823 | 537 | 314 | 11 | 1 | 514 | 82 | 605 | 3.07e-89 | 289 |
| Msa0318890 | AT1G79840.1 | 32.362 | 652 | 383 | 23 | 1 | 622 | 119 | 742 | 7.72e-89 | 292 |
| Msa0318890 | AT1G79840.2 | 32.362 | 652 | 383 | 23 | 1 | 622 | 148 | 771 | 1.60e-88 | 291 |
| Msa0318890 | AT5G46880.3 | 32.029 | 690 | 393 | 24 | 1 | 624 | 129 | 808 | 1.86e-87 | 290 |
| Msa0318890 | AT5G46880.1 | 32.029 | 690 | 393 | 24 | 1 | 624 | 129 | 808 | 1.86e-87 | 290 |
| Msa0318890 | AT5G46880.2 | 32.029 | 690 | 393 | 24 | 1 | 624 | 129 | 808 | 1.86e-87 | 290 |
| Msa0318890 | AT5G52170.3 | 31.327 | 648 | 375 | 17 | 1 | 622 | 75 | 678 | 4.60e-87 | 285 |
| Msa0318890 | AT5G52170.1 | 31.327 | 648 | 375 | 17 | 1 | 622 | 75 | 678 | 4.60e-87 | 285 |
| Msa0318890 | AT5G52170.2 | 31.173 | 648 | 381 | 15 | 1 | 622 | 75 | 683 | 1.14e-86 | 285 |
| Msa0318890 | AT4G17710.1 | 30.733 | 641 | 386 | 19 | 1 | 624 | 106 | 705 | 1.04e-78 | 264 |
| Msa0318890 | AT1G79840.4 | 32.068 | 527 | 314 | 16 | 1 | 508 | 119 | 620 | 5.45e-73 | 247 |
| Msa0318890 | AT4G25530.1 | 27.751 | 627 | 434 | 9 | 7 | 622 | 64 | 682 | 1.55e-70 | 241 |
| Msa0318890 | AT4G00730.2 | 34.606 | 393 | 228 | 8 | 1 | 369 | 152 | 539 | 1.19e-66 | 228 |
| Msa0318890 | AT1G79840.5 | 33.077 | 390 | 222 | 14 | 1 | 373 | 119 | 486 | 9.72e-55 | 195 |
| Msa0318890 | AT5G07260.2 | 25.368 | 544 | 316 | 22 | 43 | 566 | 11 | 484 | 8.65e-28 | 118 |
| Msa0318890 | AT5G07260.1 | 25.136 | 553 | 311 | 23 | 43 | 566 | 11 | 489 | 5.02e-27 | 115 |
Find 113 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTGGTCGACATGTTTC+TGG | 0.149362 | 2_4:+18033419 | Msa0318890:CDS |
| AAAGCTCCACTTTGACTTTC+TGG | 0.209562 | 2_4:-18033687 | None:intergenic |
| AATAATCTTCACACCATCTT+TGG | 0.210210 | 2_4:-18035540 | None:intergenic |
| TTCAACTCTTGTGTGTTTAC+AGG | 0.236305 | 2_4:-18035608 | None:intergenic |
| GAAGTTCCATGAGCCATCTT+TGG | 0.238463 | 2_4:-18034184 | None:intergenic |
| AGAGTTGACCACTACTTTAA+TGG | 0.241174 | 2_4:+18033339 | Msa0318890:CDS |
| TGAAGTTGTTTCAAACTATT+AGG | 0.271208 | 2_4:-18032884 | None:intergenic |
| TCAAAGTGGAGCTTTGTTAT+TGG | 0.273622 | 2_4:+18033695 | Msa0318890:CDS |
| GATTCACAAATGGTGAAAAT+TGG | 0.281622 | 2_4:+18033390 | Msa0318890:CDS |
| GTCAACAATGCTATTGCATT+TGG | 0.284967 | 2_4:+18034158 | Msa0318890:CDS |
| GCGCGGAGAGCATCGTTATC+TGG | 0.316509 | 2_4:-18032782 | None:intergenic |
| GTGGCTCAAGCTCAAGCTCC+TGG | 0.323796 | 2_4:-18032587 | None:intergenic |
| CCACTATGTATCAATTATTC+AGG | 0.339498 | 2_4:+18034825 | Msa0318890:CDS |
| TGATGATTCAACATGTGTTT+TGG | 0.340849 | 2_4:-18033364 | None:intergenic |
| GTCTCTTTCAAGCACTTTGA+TGG | 0.342907 | 2_4:-18033661 | None:intergenic |
| AAGTTCCATGAGCCATCTTT+GGG | 0.351674 | 2_4:-18034183 | None:intergenic |
| AGAATGTTTCATAGACCCTT+TGG | 0.370185 | 2_4:+18035565 | Msa0318890:CDS |
| TGAACCTCAAAACGTCTTGC+CGG | 0.371480 | 2_4:-18034644 | None:intergenic |
| TAATAGTTTGAAACAACTTC+AGG | 0.374417 | 2_4:+18032886 | Msa0318890:CDS |
| GGTCGACATGTTTCTGGATT+CGG | 0.374726 | 2_4:+18033425 | Msa0318890:CDS |
| TCAGCTTTGCTAACAATAGT+TGG | 0.380163 | 2_4:-18033636 | None:intergenic |
| AACATGCTCTACTTAATTAG+TGG | 0.387024 | 2_4:+18035852 | Msa0318890:CDS |
| AAGCTCCACTTTGACTTTCT+GGG | 0.391206 | 2_4:-18033686 | None:intergenic |
| CTCATGGAACTTCAAAGAAT+TGG | 0.391578 | 2_4:+18034194 | Msa0318890:CDS |
| TTTCCGCGATGAGTCCTTAT+GGG | 0.399067 | 2_4:+18033257 | Msa0318890:CDS |
| AATTCCCGTGGTTTCACTAA+AGG | 0.399551 | 2_4:-18033824 | None:intergenic |
| AGTCCAGCCACCAACATCAT+TGG | 0.401935 | 2_4:-18033207 | None:intergenic |
| ATTACACATCTCCTTCCTTC+AGG | 0.404458 | 2_4:-18034398 | None:intergenic |
| ATGCTGATGACAGCGGGGTT+AGG | 0.405153 | 2_4:+18034504 | Msa0318890:CDS |
| ATAATCTTCACACCATCTTT+GGG | 0.405420 | 2_4:-18035539 | None:intergenic |
| GAAAATTGGAGCAAGACATT+TGG | 0.407628 | 2_4:+18033404 | Msa0318890:CDS |
| GAAAGAGAACATGGAAATGA+AGG | 0.408587 | 2_4:+18032823 | Msa0318890:CDS |
| AAACACACAAGAGTTGAATA+TGG | 0.410220 | 2_4:+18035613 | Msa0318890:CDS |
| TATTAGGATCATTACATGAT+TGG | 0.413021 | 2_4:-18032868 | None:intergenic |
| GAATGTTTCATAGACCCTTT+GGG | 0.421156 | 2_4:+18035566 | Msa0318890:CDS |
| GTATCATTAGCACTAAAGTT+AGG | 0.423454 | 2_4:+18033099 | Msa0318890:CDS |
| AAACAAAAGAGCACAGGTTA+AGG | 0.425246 | 2_4:+18032632 | Msa0318890:CDS |
| ACTTGCACATCAGGTTGTTA+AGG | 0.426416 | 2_4:+18034424 | Msa0318890:CDS |
| TGTAATGAAACTTGCACATC+AGG | 0.446823 | 2_4:+18034415 | Msa0318890:CDS |
| GTCCAGCCACCAACATCATT+GGG | 0.447296 | 2_4:-18033206 | None:intergenic |
| CTCTTATGATTACTTGAAAG+AGG | 0.447977 | 2_4:+18033904 | Msa0318890:CDS |
| CACTGTCAGCAACGAACCTC+TGG | 0.459310 | 2_4:-18035732 | None:intergenic |
| TTAAAGTAGTGGTCAACTCT+AGG | 0.461640 | 2_4:-18033336 | None:intergenic |
| TTGCTGATGCTGATGACAGC+GGG | 0.466069 | 2_4:+18034498 | Msa0318890:CDS |
| TTTCGACTTCTTAAGAGATC+CGG | 0.468769 | 2_4:+18034625 | Msa0318890:CDS |
| AACCACCACTTCACTTGTTG+TGG | 0.474712 | 2_4:-18032606 | None:intergenic |
| GAAATTGCACACATCTCTAC+TGG | 0.475230 | 2_4:+18034790 | Msa0318890:CDS |
| GTGTCACTTATAATTCCATC+AGG | 0.478904 | 2_4:+18035662 | Msa0318890:CDS |
| CTAGCAACAATAACAATGAA+TGG | 0.482675 | 2_4:-18034569 | None:intergenic |
| AAAATGCACGTCTCAAAGAA+AGG | 0.487725 | 2_4:+18032912 | Msa0318890:CDS |
| GAAATTCACTTCCAAGGTCC+AGG | 0.488853 | 2_4:+18033064 | Msa0318890:CDS |
| TTGCATTTGGAGCCCAAAGA+TGG | 0.489863 | 2_4:+18034171 | Msa0318890:CDS |
| TGAGCCTCTATCTAGATTCA+AGG | 0.490503 | 2_4:-18033154 | None:intergenic |
| TATGATTACTTGAAAGAGGA+TGG | 0.498521 | 2_4:+18033908 | Msa0318890:CDS |
| GTGACACATTTGATAAATCA+TGG | 0.499449 | 2_4:-18035646 | None:intergenic |
| AATAATTGATACATAGTGGT+TGG | 0.500783 | 2_4:-18034821 | None:intergenic |
| ACCTCCTTGAATCTAGATAG+AGG | 0.506046 | 2_4:+18033150 | Msa0318890:CDS |
| GATTCAAAATTTGCAACAAG+AGG | 0.507082 | 2_4:-18035779 | None:intergenic |
| TTGGATTGAGCATGTGGAAG+TGG | 0.507994 | 2_4:+18034097 | Msa0318890:CDS |
| TAGCAACAATAACAATGAAT+GGG | 0.509698 | 2_4:-18034568 | None:intergenic |
| AAATTTGCAACAAGAGGACT+AGG | 0.517166 | 2_4:-18035773 | None:intergenic |
| CCTGAATAATTGATACATAG+TGG | 0.522975 | 2_4:-18034825 | None:intergenic |
| ATCATCAAAAGATTCACAAA+TGG | 0.526011 | 2_4:+18033380 | Msa0318890:CDS |
| TGGCTCAAGCTCAAGCTCCT+GGG | 0.527865 | 2_4:-18032586 | None:intergenic |
| AACCCAATGATGTTGGTGGC+TGG | 0.530454 | 2_4:+18033204 | Msa0318890:CDS |
| TAAAGTAGTGGTCAACTCTA+GGG | 0.531595 | 2_4:-18033335 | None:intergenic |
| CCTCTAGTTTCTCCCAAAGA+TGG | 0.533895 | 2_4:+18035527 | Msa0318890:CDS |
| AAGCTGAGACTTAACCCATA+AGG | 0.535338 | 2_4:-18033271 | None:intergenic |
| TGGAGCCCAAAGATGGCTCA+TGG | 0.538769 | 2_4:+18034178 | Msa0318890:CDS |
| AGCTCCACTTTGACTTTCTG+GGG | 0.544796 | 2_4:-18033685 | None:intergenic |
| CTCTCCGCGCTGAAAATGAA+AGG | 0.545522 | 2_4:+18032795 | Msa0318890:CDS |
| TACAAGTTGAAGCTGGTATG+TGG | 0.546205 | 2_4:+18033867 | Msa0318890:CDS |
| AGTCGAAAACAATATGAGAC+GGG | 0.556073 | 2_4:-18034610 | None:intergenic |
| GGTTTCTTGGATTGAGCATG+TGG | 0.560486 | 2_4:+18034091 | Msa0318890:intron |
| ATAATTGATACATAGTGGTT+GGG | 0.560512 | 2_4:-18034820 | None:intergenic |
| AATACAAAACCCAATGATGT+TGG | 0.560670 | 2_4:+18033197 | Msa0318890:CDS |
| AAATGCACGTCTCAAAGAAA+GGG | 0.562937 | 2_4:+18032913 | Msa0318890:CDS |
| ATGTGTGCAATTTCATGCCA+TGG | 0.566418 | 2_4:-18034781 | None:intergenic |
| GAGTTGAATATGGCAATGAA+TGG | 0.573412 | 2_4:+18035623 | Msa0318890:CDS |
| AATATCTAATGAGACTTCCA+AGG | 0.574407 | 2_4:+18033979 | Msa0318890:CDS |
| GACTCCCCAGAAAGTCAAAG+TGG | 0.577198 | 2_4:+18033681 | Msa0318890:CDS |
| TTATGCTACGTACAGATGCA+TGG | 0.588414 | 2_4:+18033782 | Msa0318890:intron |
| AAGTCGAAAACAATATGAGA+CGG | 0.588442 | 2_4:-18034611 | None:intergenic |
| GGTGGCTGGACTTGCCGCCA+CGG | 0.591534 | 2_4:+18033218 | Msa0318890:CDS |
| TGATGGGAAATTCACTTCCA+AGG | 0.591880 | 2_4:+18033058 | Msa0318890:CDS |
| GTTTCAAAACAAAAGAGCAC+AGG | 0.592799 | 2_4:+18032626 | Msa0318890:CDS |
| CAGAGGTTCGTTGCTGACAG+TGG | 0.595573 | 2_4:+18035733 | Msa0318890:CDS |
| AAACAACATAGGATCCCAAA+GGG | 0.596630 | 2_4:-18035580 | None:intergenic |
| AGCCACAACAAGTGAAGTGG+TGG | 0.600152 | 2_4:+18032604 | Msa0318890:CDS |
| TATTGCGTACAAGTTGAAGC+TGG | 0.606947 | 2_4:+18033860 | Msa0318890:CDS |
| AAAACAATATGAGACGGGAG+AGG | 0.618201 | 2_4:-18034605 | None:intergenic |
| TCAGTGGTTACATTACCTGA+AGG | 0.618247 | 2_4:+18034383 | Msa0318890:intron |
| TTCACCTTTAGTGAAACCAC+GGG | 0.619254 | 2_4:+18033820 | Msa0318890:CDS |
| AAATTCACTTCCAAGGTCCA+GGG | 0.620783 | 2_4:+18033065 | Msa0318890:CDS |
| TACAGGAGAATAAACAACAT+AGG | 0.623592 | 2_4:-18035591 | None:intergenic |
| CGAAGAAAGTAAAATTCCCG+TGG | 0.624894 | 2_4:-18033836 | None:intergenic |
| TGGTTACATTACCTGAAGGA+AGG | 0.625611 | 2_4:+18034387 | Msa0318890:CDS |
| AAGCTTAAGCAACTCTTCCG+TGG | 0.628294 | 2_4:-18033235 | None:intergenic |
| TTGAGCCACAACAAGTGAAG+TGG | 0.628334 | 2_4:+18032601 | Msa0318890:CDS |
| TAAACAACATAGGATCCCAA+AGG | 0.631648 | 2_4:-18035581 | None:intergenic |
| TCAGCATCAGCAAAGTATTG+TGG | 0.632074 | 2_4:-18034488 | None:intergenic |
| TTTCACCTTTAGTGAAACCA+CGG | 0.633802 | 2_4:+18033819 | Msa0318890:CDS |
| ACAAAACCCAATGATGTTGG+TGG | 0.641799 | 2_4:+18033200 | Msa0318890:CDS |
| CTTGCTAAAAGCTCGACACG+TGG | 0.642931 | 2_4:+18033123 | Msa0318890:CDS |
| TCAAAAGATAGTAAATCCAG+AGG | 0.643636 | 2_4:+18035716 | Msa0318890:CDS |
| AGACGGGAGAGGTATCAAAA+CGG | 0.645863 | 2_4:-18034594 | None:intergenic |
| CCATCTTTGGGAGAAACTAG+AGG | 0.657543 | 2_4:-18035527 | None:intergenic |
| ACAAGTTGAAGCTGGTATGT+GGG | 0.664498 | 2_4:+18033868 | Msa0318890:CDS |
| TTTGCTGATGCTGATGACAG+CGG | 0.677579 | 2_4:+18034497 | Msa0318890:CDS |
| TGCTGATGCTGATGACAGCG+GGG | 0.703574 | 2_4:+18034499 | Msa0318890:CDS |
| GCCTCTATCTAGATTCAAGG+AGG | 0.723251 | 2_4:-18033151 | None:intergenic |
| CTTAAGCAACTCTTCCGTGG+CGG | 0.730831 | 2_4:-18033232 | None:intergenic |
| TAACCCATAAGGACTCATCG+CGG | 0.774250 | 2_4:-18033260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTCTTATAAATAAAATA+TGG | - | chr2_4:18034857-18034876 | None:intergenic | 10.0% |
| !! | ACTTTATATATATAAAAATG+TGG | - | chr2_4:18035393-18035412 | None:intergenic | 10.0% |
| !! | AATTTATCTTAAATTAATGG+TGG | + | chr2_4:18033576-18033595 | Msa0318890:intron | 15.0% |
| !!! | GAAACATATGTTTAATTTTT+AGG | + | chr2_4:18034070-18034089 | Msa0318890:intron | 15.0% |
| !! | TAGTTAAATAGGTTAAATAA+TGG | - | chr2_4:18034288-18034307 | None:intergenic | 15.0% |
| !! | GAATACTAAAGAAAATTATA+AGG | - | chr2_4:18034319-18034338 | None:intergenic | 15.0% |
| !! | AAAGTTTCATAAAATACAAT+AGG | + | chr2_4:18035408-18035427 | Msa0318890:intron | 15.0% |
| !!! | AATTTTTTTTTCTTTCTATG+TGG | + | chr2_4:18035499-18035518 | Msa0318890:intron | 15.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | - | chr2_4:18032714-18032733 | None:intergenic | 20.0% |
| !! | AAACGAAGAAAAATATTTGA+AGG | - | chr2_4:18033729-18033748 | None:intergenic | 20.0% |
| !!! | TTGAATTTTGATAACATGTT+AGG | + | chr2_4:18033757-18033776 | Msa0318890:intron | 20.0% |
| !!! | TGAATTTTGATAACATGTTA+GGG | + | chr2_4:18033758-18033777 | Msa0318890:intron | 20.0% |
| !!! | TGTTTAATTTTTAGGTTTCT+TGG | + | chr2_4:18034078-18034097 | Msa0318890:intron | 20.0% |
| !!! | TTCATTTATATACTTTTCAG+TGG | + | chr2_4:18034367-18034386 | Msa0318890:intron | 20.0% |
| !!! | TAGGATTGTTTCAATTATTT+TGG | + | chr2_4:18035022-18035041 | Msa0318890:intron | 20.0% |
| !! | TTTCAAAATTTAGGCTTATT+AGG | + | chr2_4:18035053-18035072 | Msa0318890:intron | 20.0% |
| !! | TTCAAAATTTAGGCTTATTA+GGG | + | chr2_4:18035054-18035073 | Msa0318890:intron | 20.0% |
| !!! | ACAAAAGTACAAGAATAAAA+GGG | - | chr2_4:18035092-18035111 | None:intergenic | 20.0% |
| !!! | TACAAAAGTACAAGAATAAA+AGG | - | chr2_4:18035093-18035112 | None:intergenic | 20.0% |
| !! | TATCAAGTCAATAAATGAAT+CGG | - | chr2_4:18035291-18035310 | None:intergenic | 20.0% |
| !!! | TTTTGATGTGTAATTTGTTT+AGG | + | chr2_4:18035464-18035483 | Msa0318890:intron | 20.0% |
| !!! | TGATATTTTTGGTTATCATC+TGG | - | chr2_4:18032561-18032580 | None:intergenic | 25.0% |
| ! | TATTAGGATCATTACATGAT+TGG | - | chr2_4:18032871-18032890 | None:intergenic | 25.0% |
| !! | TGAAGTTGTTTCAAACTATT+AGG | - | chr2_4:18032887-18032906 | None:intergenic | 25.0% |
| !! | TAATAGTTTGAAACAACTTC+AGG | + | chr2_4:18032886-18032905 | Msa0318890:CDS | 25.0% |
| !!! | TTCTTTTTAGTATGAGATGA+TGG | + | chr2_4:18033041-18033060 | Msa0318890:intron | 25.0% |
| !!! | TCTTTTTAGTATGAGATGAT+GGG | + | chr2_4:18033042-18033061 | Msa0318890:intron | 25.0% |
| ! | ATCATCAAAAGATTCACAAA+TGG | + | chr2_4:18033380-18033399 | Msa0318890:CDS | 25.0% |
| ! | GATCTCAATAAAAATCATTG+TGG | - | chr2_4:18033477-18033496 | None:intergenic | 25.0% |
| !! | AATTTTCTGTCTAGGAAAAA+TGG | + | chr2_4:18033601-18033620 | Msa0318890:intron | 25.0% |
| !! | ATTTTCTGTCTAGGAAAAAT+GGG | + | chr2_4:18033602-18033621 | Msa0318890:intron | 25.0% |
| ! | TATTATATACGTACTAACCT+TGG | - | chr2_4:18033999-18034018 | None:intergenic | 25.0% |
| !! | TACAAGCATTTTTATGACAA+TGG | + | chr2_4:18034245-18034264 | Msa0318890:CDS | 25.0% |
| !! | AGGAGTTTTCTTAGTTAAAT+AGG | - | chr2_4:18034299-18034318 | None:intergenic | 25.0% |
| ! | TAGCAACAATAACAATGAAT+GGG | - | chr2_4:18034571-18034590 | None:intergenic | 25.0% |
| !! | TGTTAATTATTTTCATGCAG+TGG | + | chr2_4:18034737-18034756 | Msa0318890:intron | 25.0% |
| !! | GTTAATTATTTTCATGCAGT+GGG | + | chr2_4:18034738-18034757 | Msa0318890:intron | 25.0% |
| ! | ATAATTGATACATAGTGGTT+GGG | - | chr2_4:18034823-18034842 | None:intergenic | 25.0% |
| ! | AATAATTGATACATAGTGGT+TGG | - | chr2_4:18034824-18034843 | None:intergenic | 25.0% |
| !! | TATGTTCATTTGAAATGACA+TGG | - | chr2_4:18034954-18034973 | None:intergenic | 25.0% |
| !!! | AAGCCTAAATTTTGAAAAGT+TGG | - | chr2_4:18035050-18035069 | None:intergenic | 25.0% |
| !! | CAAAAGTACAAGAATAAAAG+GGG | - | chr2_4:18035091-18035110 | None:intergenic | 25.0% |
| ! | ACATACAAAAACACAAGTTA+GGG | + | chr2_4:18035358-18035377 | Msa0318890:intron | 25.0% |
| !!! | TGTAATTTGTTTAGGTCTTT+TGG | + | chr2_4:18035472-18035491 | Msa0318890:intron | 25.0% |
| !! | AAGGATTTTGAAAGAGAACA+TGG | + | chr2_4:18032814-18032833 | Msa0318890:CDS | 30.0% |
| GTATCATTAGCACTAAAGTT+AGG | + | chr2_4:18033099-18033118 | Msa0318890:CDS | 30.0% | |
| AATACAAAACCCAATGATGT+TGG | + | chr2_4:18033197-18033216 | Msa0318890:CDS | 30.0% | |
| ! | TGATGATTCAACATGTGTTT+TGG | - | chr2_4:18033367-18033386 | None:intergenic | 30.0% |
| GATTCACAAATGGTGAAAAT+TGG | + | chr2_4:18033390-18033409 | Msa0318890:CDS | 30.0% | |
| CTCTTATGATTACTTGAAAG+AGG | + | chr2_4:18033904-18033923 | Msa0318890:CDS | 30.0% | |
| TATGATTACTTGAAAGAGGA+TGG | + | chr2_4:18033908-18033927 | Msa0318890:CDS | 30.0% | |
| ! | TTTTGAATCAAACATCCAGA+AGG | - | chr2_4:18033959-18033978 | None:intergenic | 30.0% |
| AATATCTAATGAGACTTCCA+AGG | + | chr2_4:18033979-18033998 | Msa0318890:CDS | 30.0% | |
| ! | AAGCATTTTTATGACAATGG+AGG | + | chr2_4:18034248-18034267 | Msa0318890:CDS | 30.0% |
| CTAGCAACAATAACAATGAA+TGG | - | chr2_4:18034572-18034591 | None:intergenic | 30.0% | |
| AAGTCGAAAACAATATGAGA+CGG | - | chr2_4:18034614-18034633 | None:intergenic | 30.0% | |
| CCTGAATAATTGATACATAG+TGG | - | chr2_4:18034828-18034847 | None:intergenic | 30.0% | |
| CCACTATGTATCAATTATTC+AGG | + | chr2_4:18034825-18034844 | Msa0318890:CDS | 30.0% | |
| ! | TTCATTTGAAATGACATGGA+AGG | - | chr2_4:18034950-18034969 | None:intergenic | 30.0% |
| TGTGTGATCAAAATGAATCT+AGG | + | chr2_4:18035003-18035022 | Msa0318890:intron | 30.0% | |
| ! | GTGCCAACTTTTCAAAATTT+AGG | + | chr2_4:18035044-18035063 | Msa0318890:intron | 30.0% |
| !! | AACTTGTTGATTTACAACTC+AGG | + | chr2_4:18035116-18035135 | Msa0318890:intron | 30.0% |
| !! | ACTTGTTGATTTACAACTCA+GGG | + | chr2_4:18035117-18035136 | Msa0318890:intron | 30.0% |
| TTGATGCCTTTCTTATATCT+CGG | + | chr2_4:18035140-18035159 | Msa0318890:intron | 30.0% | |
| TCAAAGTGAAACAGTTACTT+AGG | - | chr2_4:18035184-18035203 | None:intergenic | 30.0% | |
| TTGTGAAGAACGTTTAACAT+AGG | - | chr2_4:18035209-18035228 | None:intergenic | 30.0% | |
| ! | TCACAATAGACTTAGGTTTT+TGG | + | chr2_4:18035223-18035242 | Msa0318890:intron | 30.0% |
| !!! | ACTTAGGTTTTTGGCATAAT+AGG | + | chr2_4:18035232-18035251 | Msa0318890:intron | 30.0% |
| GACATACAAAAACACAAGTT+AGG | + | chr2_4:18035357-18035376 | Msa0318890:intron | 30.0% | |
| ATAATCTTCACACCATCTTT+GGG | - | chr2_4:18035542-18035561 | None:intergenic | 30.0% | |
| AATAATCTTCACACCATCTT+TGG | - | chr2_4:18035543-18035562 | None:intergenic | 30.0% | |
| TACAGGAGAATAAACAACAT+AGG | - | chr2_4:18035594-18035613 | None:intergenic | 30.0% | |
| AAACACACAAGAGTTGAATA+TGG | + | chr2_4:18035613-18035632 | Msa0318890:CDS | 30.0% | |
| GTGACACATTTGATAAATCA+TGG | - | chr2_4:18035649-18035668 | None:intergenic | 30.0% | |
| TCAAAAGATAGTAAATCCAG+AGG | + | chr2_4:18035716-18035735 | Msa0318890:CDS | 30.0% | |
| GATTCAAAATTTGCAACAAG+AGG | - | chr2_4:18035782-18035801 | None:intergenic | 30.0% | |
| ! | CCTGGGCTATTTGATATTTT+TGG | - | chr2_4:18032572-18032591 | None:intergenic | 35.0% |
| CCAAAAATATCAAATAGCCC+AGG | + | chr2_4:18032569-18032588 | Msa0318890:CDS | 35.0% | |
| ! | GTTTCAAAACAAAAGAGCAC+AGG | + | chr2_4:18032626-18032645 | Msa0318890:CDS | 35.0% |
| ! | AAACAAAAGAGCACAGGTTA+AGG | + | chr2_4:18032632-18032651 | Msa0318890:CDS | 35.0% |
| ! | AAATCCTTTCATTTTCAGCG+CGG | - | chr2_4:18032802-18032821 | None:intergenic | 35.0% |
| GAAAGAGAACATGGAAATGA+AGG | + | chr2_4:18032823-18032842 | Msa0318890:CDS | 35.0% | |
| AAAATGCACGTCTCAAAGAA+AGG | + | chr2_4:18032912-18032931 | Msa0318890:CDS | 35.0% | |
| AAATGCACGTCTCAAAGAAA+GGG | + | chr2_4:18032913-18032932 | Msa0318890:CDS | 35.0% | |
| TAAAGTAGTGGTCAACTCTA+GGG | - | chr2_4:18033338-18033357 | None:intergenic | 35.0% | |
| TTAAAGTAGTGGTCAACTCT+AGG | - | chr2_4:18033339-18033358 | None:intergenic | 35.0% | |
| AGAGTTGACCACTACTTTAA+TGG | + | chr2_4:18033339-18033358 | Msa0318890:CDS | 35.0% | |
| GAAAATTGGAGCAAGACATT+TGG | + | chr2_4:18033404-18033423 | Msa0318890:CDS | 35.0% | |
| !! | TGGTGGATAATTTTCTGTCT+AGG | + | chr2_4:18033593-18033612 | Msa0318890:intron | 35.0% |
| TCAGCTTTGCTAACAATAGT+TGG | - | chr2_4:18033639-18033658 | None:intergenic | 35.0% | |
| !! | TCAAAGTGGAGCTTTGTTAT+TGG | + | chr2_4:18033695-18033714 | Msa0318890:CDS | 35.0% |
| TTTCACCTTTAGTGAAACCA+CGG | + | chr2_4:18033819-18033838 | Msa0318890:CDS | 35.0% | |
| ! | ATGGACCTCATTCTTCTTTT+TGG | + | chr2_4:18033927-18033946 | Msa0318890:CDS | 35.0% |
| AACCTCCAAAAAGAAGAATG+AGG | - | chr2_4:18033935-18033954 | None:intergenic | 35.0% | |
| GTCAACAATGCTATTGCATT+TGG | + | chr2_4:18034158-18034177 | Msa0318890:CDS | 35.0% | |
| CTCATGGAACTTCAAAGAAT+TGG | + | chr2_4:18034194-18034213 | Msa0318890:CDS | 35.0% | |
| TGTAATGAAACTTGCACATC+AGG | + | chr2_4:18034415-18034434 | Msa0318890:CDS | 35.0% | |
| AGTCGAAAACAATATGAGAC+GGG | - | chr2_4:18034613-18034632 | None:intergenic | 35.0% | |
| TTTCGACTTCTTAAGAGATC+CGG | + | chr2_4:18034625-18034644 | Msa0318890:CDS | 35.0% | |
| ATATGTTCTCCACACAAATG+AGG | - | chr2_4:18034984-18035003 | None:intergenic | 35.0% | |
| TGATGCCTTTCTTATATCTC+GGG | + | chr2_4:18035141-18035160 | Msa0318890:intron | 35.0% | |
| ACGTTCTTCACAATAGACTT+AGG | + | chr2_4:18035216-18035235 | Msa0318890:intron | 35.0% | |
| ! | TAGGTATGTCAGTCTTATAG+CGG | + | chr2_4:18035251-18035270 | Msa0318890:intron | 35.0% |
| ! | TATGTCGTGACATTTTCAGA+TGG | - | chr2_4:18035343-18035362 | None:intergenic | 35.0% |
| AACACAAGTTAGGGATTTCT+TGG | + | chr2_4:18035367-18035386 | Msa0318890:intron | 35.0% | |
| AGAATGTTTCATAGACCCTT+TGG | + | chr2_4:18035565-18035584 | Msa0318890:CDS | 35.0% | |
| GAATGTTTCATAGACCCTTT+GGG | + | chr2_4:18035566-18035585 | Msa0318890:CDS | 35.0% | |
| AAACAACATAGGATCCCAAA+GGG | - | chr2_4:18035583-18035602 | None:intergenic | 35.0% | |
| TAAACAACATAGGATCCCAA+AGG | - | chr2_4:18035584-18035603 | None:intergenic | 35.0% | |
| TTCAACTCTTGTGTGTTTAC+AGG | - | chr2_4:18035611-18035630 | None:intergenic | 35.0% | |
| GAGTTGAATATGGCAATGAA+TGG | + | chr2_4:18035623-18035642 | Msa0318890:CDS | 35.0% | |
| !! | GTGTCACTTATAATTCCATC+AGG | + | chr2_4:18035662-18035681 | Msa0318890:CDS | 35.0% |
| AAATTTGCAACAAGAGGACT+AGG | - | chr2_4:18035776-18035795 | None:intergenic | 35.0% | |
| TGATGGGAAATTCACTTCCA+AGG | + | chr2_4:18033058-18033077 | Msa0318890:CDS | 40.0% | |
| AAATTCACTTCCAAGGTCCA+GGG | + | chr2_4:18033065-18033084 | Msa0318890:CDS | 40.0% | |
| ! | TGATACTTCCTCTTTTTCCC+TGG | - | chr2_4:18033085-18033104 | None:intergenic | 40.0% |
| ACCTCCTTGAATCTAGATAG+AGG | + | chr2_4:18033150-18033169 | Msa0318890:CDS | 40.0% | |
| TGAGCCTCTATCTAGATTCA+AGG | - | chr2_4:18033157-18033176 | None:intergenic | 40.0% | |
| ACAAAACCCAATGATGTTGG+TGG | + | chr2_4:18033200-18033219 | Msa0318890:CDS | 40.0% | |
| AAGCTGAGACTTAACCCATA+AGG | - | chr2_4:18033274-18033293 | None:intergenic | 40.0% | |
| ! | TTTTGGCGCCATTAAAGTAG+TGG | - | chr2_4:18033350-18033369 | None:intergenic | 40.0% |
| ACATTTGGTCGACATGTTTC+TGG | + | chr2_4:18033419-18033438 | Msa0318890:CDS | 40.0% | |
| GTCTCTTTCAAGCACTTTGA+TGG | - | chr2_4:18033664-18033683 | None:intergenic | 40.0% | |
| ! | AAGCTCCACTTTGACTTTCT+GGG | - | chr2_4:18033689-18033708 | None:intergenic | 40.0% |
| ! | AAAGCTCCACTTTGACTTTC+TGG | - | chr2_4:18033690-18033709 | None:intergenic | 40.0% |
| TTATGCTACGTACAGATGCA+TGG | + | chr2_4:18033782-18033801 | Msa0318890:intron | 40.0% | |
| TTCACCTTTAGTGAAACCAC+GGG | + | chr2_4:18033820-18033839 | Msa0318890:CDS | 40.0% | |
| AATTCCCGTGGTTTCACTAA+AGG | - | chr2_4:18033827-18033846 | None:intergenic | 40.0% | |
| CGAAGAAAGTAAAATTCCCG+TGG | - | chr2_4:18033839-18033858 | None:intergenic | 40.0% | |
| ! | TATTGCGTACAAGTTGAAGC+TGG | + | chr2_4:18033860-18033879 | Msa0318890:CDS | 40.0% |
| ! | TACAAGTTGAAGCTGGTATG+TGG | + | chr2_4:18033867-18033886 | Msa0318890:CDS | 40.0% |
| ! | ACAAGTTGAAGCTGGTATGT+GGG | + | chr2_4:18033868-18033887 | Msa0318890:CDS | 40.0% |
| ! | GACCTCATTCTTCTTTTTGG+AGG | + | chr2_4:18033930-18033949 | Msa0318890:CDS | 40.0% |
| !! | TCTTTTTGGAGGTTTCCTTC+TGG | + | chr2_4:18033941-18033960 | Msa0318890:CDS | 40.0% |
| AAGTTCCATGAGCCATCTTT+GGG | - | chr2_4:18034186-18034205 | None:intergenic | 40.0% | |
| TCAGTGGTTACATTACCTGA+AGG | + | chr2_4:18034383-18034402 | Msa0318890:intron | 40.0% | |
| TGGTTACATTACCTGAAGGA+AGG | + | chr2_4:18034387-18034406 | Msa0318890:CDS | 40.0% | |
| ATTACACATCTCCTTCCTTC+AGG | - | chr2_4:18034401-18034420 | None:intergenic | 40.0% | |
| ! | ACTTGCACATCAGGTTGTTA+AGG | + | chr2_4:18034424-18034443 | Msa0318890:CDS | 40.0% |
| !! | TCAGCATCAGCAAAGTATTG+TGG | - | chr2_4:18034491-18034510 | None:intergenic | 40.0% |
| AAAACAATATGAGACGGGAG+AGG | - | chr2_4:18034608-18034627 | None:intergenic | 40.0% | |
| !! | CGTTTTGTGATGGAAATCCA+TGG | + | chr2_4:18034764-18034783 | Msa0318890:CDS | 40.0% |
| ATGTGTGCAATTTCATGCCA+TGG | - | chr2_4:18034784-18034803 | None:intergenic | 40.0% | |
| GAAATTGCACACATCTCTAC+TGG | + | chr2_4:18034790-18034809 | Msa0318890:CDS | 40.0% | |
| ! | TGGAAGGAAGTGTAGGAAAA+TGG | - | chr2_4:18034934-18034953 | None:intergenic | 40.0% |
| ! | AATGACATGGAAGGAAGTGT+AGG | - | chr2_4:18034941-18034960 | None:intergenic | 40.0% |
| TATGATGCACCTCATTTGTG+TGG | + | chr2_4:18034972-18034991 | Msa0318890:intron | 40.0% | |
| GAAAGCCCGAGATATAAGAA+AGG | - | chr2_4:18035149-18035168 | None:intergenic | 40.0% | |
| TCAGAGATGAAAAAGCCTGA+TGG | - | chr2_4:18035680-18035699 | None:intergenic | 40.0% | |
| TTGAGCCACAACAAGTGAAG+TGG | + | chr2_4:18032601-18032620 | Msa0318890:CDS | 45.0% | |
| ! | AACCACCACTTCACTTGTTG+TGG | - | chr2_4:18032609-18032628 | None:intergenic | 45.0% |
| GAAATTCACTTCCAAGGTCC+AGG | + | chr2_4:18033064-18033083 | Msa0318890:CDS | 45.0% | |
| GCCTCTATCTAGATTCAAGG+AGG | - | chr2_4:18033154-18033173 | None:intergenic | 45.0% | |
| AAGCTTAAGCAACTCTTCCG+TGG | - | chr2_4:18033238-18033257 | None:intergenic | 45.0% | |
| ! | TTTTCCGCGATGAGTCCTTA+TGG | + | chr2_4:18033256-18033275 | Msa0318890:CDS | 45.0% |
| TTTCCGCGATGAGTCCTTAT+GGG | + | chr2_4:18033257-18033276 | Msa0318890:CDS | 45.0% | |
| TAACCCATAAGGACTCATCG+CGG | - | chr2_4:18033263-18033282 | None:intergenic | 45.0% | |
| !! | GGTCGACATGTTTCTGGATT+CGG | + | chr2_4:18033425-18033444 | Msa0318890:CDS | 45.0% |
| ! | AGCTCCACTTTGACTTTCTG+GGG | - | chr2_4:18033688-18033707 | None:intergenic | 45.0% |
| GGTTTCTTGGATTGAGCATG+TGG | + | chr2_4:18034091-18034110 | Msa0318890:intron | 45.0% | |
| TTGGATTGAGCATGTGGAAG+TGG | + | chr2_4:18034097-18034116 | Msa0318890:CDS | 45.0% | |
| ! | TTGCATTTGGAGCCCAAAGA+TGG | + | chr2_4:18034171-18034190 | Msa0318890:CDS | 45.0% |
| GAAGTTCCATGAGCCATCTT+TGG | - | chr2_4:18034187-18034206 | None:intergenic | 45.0% | |
| TTTGCTGATGCTGATGACAG+CGG | + | chr2_4:18034497-18034516 | Msa0318890:CDS | 45.0% | |
| !! | AGACGGGAGAGGTATCAAAA+CGG | - | chr2_4:18034597-18034616 | None:intergenic | 45.0% |
| TGAACCTCAAAACGTCTTGC+CGG | - | chr2_4:18034647-18034666 | None:intergenic | 45.0% | |
| ! | CAGTGGGATACGTTTTGTGA+TGG | + | chr2_4:18034754-18034773 | Msa0318890:intron | 45.0% |
| ! | CCATCTTTGGGAGAAACTAG+AGG | - | chr2_4:18035530-18035549 | None:intergenic | 45.0% |
| ! | CCTCTAGTTTCTCCCAAAGA+TGG | + | chr2_4:18035527-18035546 | Msa0318890:CDS | 45.0% |
| !!! | TTTAATTTATCTTAAATTAA+TGG | + | chr2_4:18033573-18033592 | Msa0318890:intron | 5.0% |
| AGCCACAACAAGTGAAGTGG+TGG | + | chr2_4:18032604-18032623 | Msa0318890:CDS | 50.0% | |
| CTCTCCGCGCTGAAAATGAA+AGG | + | chr2_4:18032795-18032814 | Msa0318890:CDS | 50.0% | |
| TCCAAGGTCCAGGGAAAAAG+AGG | + | chr2_4:18033074-18033093 | Msa0318890:CDS | 50.0% | |
| ! | TCCTCTTTTTCCCTGGACCT+TGG | - | chr2_4:18033078-18033097 | None:intergenic | 50.0% |
| CTTGCTAAAAGCTCGACACG+TGG | + | chr2_4:18033123-18033142 | Msa0318890:CDS | 50.0% | |
| !! | AACCCAATGATGTTGGTGGC+TGG | + | chr2_4:18033204-18033223 | Msa0318890:CDS | 50.0% |
| GTCCAGCCACCAACATCATT+GGG | - | chr2_4:18033209-18033228 | None:intergenic | 50.0% | |
| AGTCCAGCCACCAACATCAT+TGG | - | chr2_4:18033210-18033229 | None:intergenic | 50.0% | |
| CTTAAGCAACTCTTCCGTGG+CGG | - | chr2_4:18033235-18033254 | None:intergenic | 50.0% | |
| GACTCCCCAGAAAGTCAAAG+TGG | + | chr2_4:18033681-18033700 | Msa0318890:CDS | 50.0% | |
| TTGCTGATGCTGATGACAGC+GGG | + | chr2_4:18034498-18034517 | Msa0318890:CDS | 50.0% | |
| ! | AGATCCGGCAAGACGTTTTG+AGG | + | chr2_4:18034640-18034659 | Msa0318890:CDS | 50.0% |
| TGGCTCAAGCTCAAGCTCCT+GGG | - | chr2_4:18032589-18032608 | None:intergenic | 55.0% | |
| TGGAGCCCAAAGATGGCTCA+TGG | + | chr2_4:18034178-18034197 | Msa0318890:CDS | 55.0% | |
| TGCTGATGCTGATGACAGCG+GGG | + | chr2_4:18034499-18034518 | Msa0318890:CDS | 55.0% | |
| ATGCTGATGACAGCGGGGTT+AGG | + | chr2_4:18034504-18034523 | Msa0318890:CDS | 55.0% | |
| CACTGTCAGCAACGAACCTC+TGG | - | chr2_4:18035735-18035754 | None:intergenic | 55.0% | |
| CAGAGGTTCGTTGCTGACAG+TGG | + | chr2_4:18035733-18035752 | Msa0318890:CDS | 55.0% | |
| GTGGCTCAAGCTCAAGCTCC+TGG | - | chr2_4:18032590-18032609 | None:intergenic | 60.0% | |
| !! | GCGCGGAGAGCATCGTTATC+TGG | - | chr2_4:18032785-18032804 | None:intergenic | 60.0% |
| GGTGGCTGGACTTGCCGCCA+CGG | + | chr2_4:18033218-18033237 | Msa0318890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 18032537 | 18035871 | 18032537 | ID=Msa0318890;Name=Msa0318890 |
| chr2_4 | mRNA | 18032537 | 18035871 | 18032537 | ID=Msa0318890-mRNA-1;Parent=Msa0318890;Name=Msa0318890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|0.88|9|0|624 |
| chr2_4 | exon | 18032537 | 18032653 | 18032537 | ID=Msa0318890-mRNA-1:exon:6724;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18032767 | 18032934 | 18032767 | ID=Msa0318890-mRNA-1:exon:6725;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18033051 | 18033446 | 18033051 | ID=Msa0318890-mRNA-1:exon:6726;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18033615 | 18033716 | 18033615 | ID=Msa0318890-mRNA-1:exon:6727;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18033797 | 18034000 | 18033797 | ID=Msa0318890-mRNA-1:exon:6728;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18034092 | 18034269 | 18034092 | ID=Msa0318890-mRNA-1:exon:6729;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18034387 | 18034661 | 18034387 | ID=Msa0318890-mRNA-1:exon:6730;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18034757 | 18034846 | 18034757 | ID=Msa0318890-mRNA-1:exon:6731;Parent=Msa0318890-mRNA-1 |
| chr2_4 | exon | 18035527 | 18035871 | 18035527 | ID=Msa0318890-mRNA-1:exon:6732;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18032537 | 18032653 | 18032537 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18032767 | 18032934 | 18032767 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18033051 | 18033446 | 18033051 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18033615 | 18033716 | 18033615 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18033797 | 18034000 | 18033797 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18034092 | 18034269 | 18034092 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18034387 | 18034661 | 18034387 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18034757 | 18034846 | 18034757 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| chr2_4 | CDS | 18035527 | 18035871 | 18035527 | ID=Msa0318890-mRNA-1:cds;Parent=Msa0318890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
