Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318900 | AES64821.1 | 89.600 | 125 | 13 | 0 | 4 | 128 | 36 | 160 | 1.44e-73 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318900 | sp|Q6ZAR0|ROC1_ORYSJ | 35.455 | 110 | 62 | 2 | 1 | 101 | 121 | 230 | 9.93e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0318900 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318900 | MtrunA17_Chr2g0292781 | 80.682 | 88 | 14 | 1 | 41 | 128 | 2 | 86 | 1.62e-43 | 137 |
| Msa0318900 | MtrunA17_Chr4g0024351 | 31.884 | 138 | 81 | 4 | 1 | 125 | 75 | 212 | 1.60e-13 | 65.9 |
| Msa0318900 | MtrunA17_Chr2g0322731 | 32.540 | 126 | 73 | 3 | 1 | 114 | 115 | 240 | 3.95e-13 | 64.7 |
| Msa0318900 | MtrunA17_Chr2g0331581 | 31.532 | 111 | 65 | 3 | 1 | 100 | 154 | 264 | 4.69e-11 | 58.9 |
| Msa0318900 | MtrunA17_Chr1g0203671 | 28.676 | 136 | 83 | 4 | 1 | 123 | 110 | 244 | 9.78e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0318900 | AT1G05230.8 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.4 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.9 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.10 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.7 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.11 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.2 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.6 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.5 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.1 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 8.79e-13 | 64.3 |
| Msa0318900 | AT1G05230.3 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 9.14e-13 | 64.3 |
| Msa0318900 | AT1G05230.12 | 34.454 | 119 | 66 | 3 | 1 | 107 | 79 | 197 | 3.25e-12 | 62.4 |
| Msa0318900 | AT1G79840.5 | 34.951 | 103 | 63 | 2 | 1 | 100 | 116 | 217 | 1.65e-11 | 60.5 |
| Msa0318900 | AT1G79840.1 | 34.951 | 103 | 63 | 2 | 1 | 100 | 116 | 217 | 2.11e-11 | 60.1 |
| Msa0318900 | AT1G79840.4 | 34.951 | 103 | 63 | 2 | 1 | 100 | 116 | 217 | 2.47e-11 | 60.1 |
| Msa0318900 | AT1G79840.3 | 34.951 | 103 | 63 | 2 | 1 | 100 | 58 | 159 | 2.49e-11 | 60.1 |
| Msa0318900 | AT1G79840.6 | 34.951 | 103 | 63 | 2 | 1 | 100 | 58 | 159 | 2.49e-11 | 60.1 |
| Msa0318900 | AT1G79840.2 | 34.951 | 103 | 63 | 2 | 1 | 100 | 145 | 246 | 2.53e-11 | 60.1 |
| Msa0318900 | AT5G17320.1 | 34.906 | 106 | 59 | 3 | 5 | 100 | 45 | 150 | 5.33e-11 | 58.9 |
| Msa0318900 | AT4G04890.2 | 28.986 | 138 | 84 | 4 | 1 | 124 | 77 | 214 | 8.19e-11 | 58.5 |
| Msa0318900 | AT4G04890.1 | 28.986 | 138 | 84 | 4 | 1 | 124 | 77 | 214 | 8.19e-11 | 58.5 |
Find 24 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCATCTGATGATCTTTC+GGG | 0.269210 | 2_4:-18048332 | None:intergenic |
| AACCACCAGTTCACTTGTTT+TGG | 0.280631 | 2_4:-18047821 | None:intergenic |
| GGTTCCATCTGATGATCTTT+CGG | 0.329348 | 2_4:-18048333 | None:intergenic |
| AGCTGAAATTCAAATGCATT+TGG | 0.349094 | 2_4:+18048013 | Msa0318900:CDS |
| TCCTCTTCTCCCACGTAGCT+TGG | 0.388842 | 2_4:-18048281 | None:intergenic |
| AATGCATTTGGAAGCGAAAA+GGG | 0.449227 | 2_4:+18048025 | Msa0318900:CDS |
| AAATGCATTTGGAAGCGAAA+AGG | 0.450705 | 2_4:+18048024 | Msa0318900:CDS |
| TTTGGAAGCGAAAAGGGAAA+TGG | 0.469455 | 2_4:+18048031 | Msa0318900:CDS |
| CTCTCACTGGAGTTGAAGTT+AGG | 0.473633 | 2_4:+18048305 | Msa0318900:CDS |
| ATACAAAAGAGCTCAAGTTA+AGG | 0.476145 | 2_4:+18047847 | Msa0318900:CDS |
| TTGAGCCAAAACAAGTGAAC+TGG | 0.483755 | 2_4:+18047816 | Msa0318900:CDS |
| TGGCTCAAGACCAAGCTCTT+CGG | 0.488016 | 2_4:-18047801 | None:intergenic |
| AACGTGAATCACGGCATGCT+TGG | 0.497561 | 2_4:-18048076 | None:intergenic |
| TCTCAAGAATGCTACTCAAA+AGG | 0.498418 | 2_4:+18047971 | Msa0318900:intron |
| GGGAGAAGAGGAACTCTCAC+TGG | 0.520997 | 2_4:+18048292 | Msa0318900:CDS |
| TCCAAGCTACGTGGGAGAAG+AGG | 0.561213 | 2_4:+18048280 | Msa0318900:CDS |
| AGTGAAATAGCCGAAGAGCT+TGG | 0.563271 | 2_4:+18047791 | Msa0318900:CDS |
| GTTGTTTCAAACGTGAATCA+CGG | 0.584844 | 2_4:-18048085 | None:intergenic |
| CAGGACGTCTAATGATGACC+CGG | 0.598833 | 2_4:+18046164 | None:intergenic |
| AGCCAAAACAAGTGAACTGG+TGG | 0.610770 | 2_4:+18047819 | Msa0318900:CDS |
| ATTCACGTTTGAAACAACTT+CGG | 0.629375 | 2_4:+18048090 | Msa0318900:CDS |
| AAAATTGAATCCAAGCTACG+TGG | 0.657189 | 2_4:+18048271 | Msa0318900:CDS |
| CTTCCCGAAAGATCATCAGA+TGG | 0.663295 | 2_4:+18048329 | Msa0318900:CDS |
| AAATTGAATCCAAGCTACGT+GGG | 0.714001 | 2_4:+18048272 | Msa0318900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAATTAAAAAAAT+GGG | - | chr2_4:18046246-18046265 | None:intergenic | 0.0% |
| !!! | TAATTTTTTAATTAAAAAAA+TGG | - | chr2_4:18046247-18046266 | None:intergenic | 0.0% |
| !!! | AATTTTTTAATTAAAAAAAT+GGG | - | chr2_4:18046246-18046265 | None:intergenic | 0.0% |
| !!! | TAATTTTTTAATTAAAAAAA+TGG | - | chr2_4:18046247-18046266 | None:intergenic | 0.0% |
| !!! | ATTTACAATTGATTTTTTTT+TGG | + | chr2_4:18046916-18046935 | Msa0318900:intron | 10.0% |
| !!! | ATTTACAATTGATTTTTTTT+TGG | + | chr2_4:18046916-18046935 | Msa0318900:intron | 10.0% |
| !! | TAATACAAATTACAAAAAAG+GGG | - | chr2_4:18046387-18046406 | None:intergenic | 15.0% |
| !! | GTAATACAAATTACAAAAAA+GGG | - | chr2_4:18046388-18046407 | None:intergenic | 15.0% |
| !! | ACGATTAAATTTATAAAGTT+TGG | + | chr2_4:18046657-18046676 | Msa0318900:intron | 15.0% |
| !!! | AATCTCCAAAAATATTTTTT+TGG | + | chr2_4:18046983-18047002 | Msa0318900:intron | 15.0% |
| !!! | GTATACCAAAAAAATATTTT+TGG | - | chr2_4:18046991-18047010 | None:intergenic | 15.0% |
| !! | ATTAATGATAATATAAGTAC+CGG | + | chr2_4:18047566-18047585 | Msa0318900:intron | 15.0% |
| !! | TAACAAACAAAAATACAATT+AGG | - | chr2_4:18047724-18047743 | None:intergenic | 15.0% |
| !!! | AAGGTAACATATATTTTTTT+TGG | + | chr2_4:18047866-18047885 | Msa0318900:intron | 15.0% |
| !!! | ATAGTAATGTTTTTTTATCA+AGG | + | chr2_4:18048186-18048205 | Msa0318900:intron | 15.0% |
| !!! | TAGTAATGTTTTTTTATCAA+GGG | + | chr2_4:18048187-18048206 | Msa0318900:intron | 15.0% |
| !! | TAATACAAATTACAAAAAAG+GGG | - | chr2_4:18046387-18046406 | None:intergenic | 15.0% |
| !! | GTAATACAAATTACAAAAAA+GGG | - | chr2_4:18046388-18046407 | None:intergenic | 15.0% |
| !! | ACGATTAAATTTATAAAGTT+TGG | + | chr2_4:18046657-18046676 | Msa0318900:intron | 15.0% |
| !!! | AATCTCCAAAAATATTTTTT+TGG | + | chr2_4:18046983-18047002 | Msa0318900:intron | 15.0% |
| !!! | GTATACCAAAAAAATATTTT+TGG | - | chr2_4:18046991-18047010 | None:intergenic | 15.0% |
| !! | ATTAATGATAATATAAGTAC+CGG | + | chr2_4:18047566-18047585 | Msa0318900:intron | 15.0% |
| !! | TAACAAACAAAAATACAATT+AGG | - | chr2_4:18047724-18047743 | None:intergenic | 15.0% |
| !!! | AAGGTAACATATATTTTTTT+TGG | + | chr2_4:18047866-18047885 | Msa0318900:intron | 15.0% |
| !!! | ATAGTAATGTTTTTTTATCA+AGG | + | chr2_4:18048186-18048205 | Msa0318900:intron | 15.0% |
| !!! | TAGTAATGTTTTTTTATCAA+GGG | + | chr2_4:18048187-18048206 | Msa0318900:intron | 15.0% |
| !! | CGTAATACAAATTACAAAAA+AGG | - | chr2_4:18046389-18046408 | None:intergenic | 20.0% |
| !! | AACAAATTTCATCAATTTGT+AGG | + | chr2_4:18046428-18046447 | Msa0318900:intron | 20.0% |
| !! | TTTGTAGGTTAATTGAAAAA+TGG | + | chr2_4:18046443-18046462 | Msa0318900:intron | 20.0% |
| !! | CTAAAAAAAAATCATATGCA+AGG | - | chr2_4:18046562-18046581 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTTGATAGATTT+TGG | + | chr2_4:18046599-18046618 | Msa0318900:intron | 20.0% |
| !! | ACTTTATAAATTTAATCGTC+CGG | - | chr2_4:18046656-18046675 | None:intergenic | 20.0% |
| !! | AAATCAAAATCTCCTTATTA+CGG | + | chr2_4:18046699-18046718 | Msa0318900:intron | 20.0% |
| !!! | ATTACTCTATAGTTTTTTGA+AGG | + | chr2_4:18046776-18046795 | Msa0318900:intron | 20.0% |
| !!! | GTAACGATCTTTTTATTATT+AGG | + | chr2_4:18047177-18047196 | Msa0318900:intron | 20.0% |
| !!! | AAGAATATCAATAGTCTTTT+GGG | - | chr2_4:18047233-18047252 | None:intergenic | 20.0% |
| !!! | TAAGAATATCAATAGTCTTT+TGG | - | chr2_4:18047234-18047253 | None:intergenic | 20.0% |
| !! | TTAAATCCATAAAAGTTAGA+TGG | + | chr2_4:18047338-18047357 | Msa0318900:intron | 20.0% |
| !!! | AATAAACCATCTAACTTTTA+TGG | - | chr2_4:18047347-18047366 | None:intergenic | 20.0% |
| !! | ATCAACTTATTTACGTTAAA+GGG | - | chr2_4:18047502-18047521 | None:intergenic | 20.0% |
| !! | TTAACATTTATCGTTTATGT+CGG | - | chr2_4:18047535-18047554 | None:intergenic | 20.0% |
| !! | TATATCTTTCCTAATTAATC+CGG | - | chr2_4:18047588-18047607 | None:intergenic | 20.0% |
| !! | GAACAAACAAAAATACAATT+AGG | - | chr2_4:18047702-18047721 | None:intergenic | 20.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | - | chr2_4:18047928-18047947 | None:intergenic | 20.0% |
| !!! | AAATGAACTTTTGAAAGAAA+AGG | + | chr2_4:18048118-18048137 | Msa0318900:CDS | 20.0% |
| !! | CGTAATACAAATTACAAAAA+AGG | - | chr2_4:18046389-18046408 | None:intergenic | 20.0% |
| !! | AACAAATTTCATCAATTTGT+AGG | + | chr2_4:18046428-18046447 | Msa0318900:intron | 20.0% |
| !! | TTTGTAGGTTAATTGAAAAA+TGG | + | chr2_4:18046443-18046462 | Msa0318900:intron | 20.0% |
| !! | CTAAAAAAAAATCATATGCA+AGG | - | chr2_4:18046562-18046581 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTTGATAGATTT+TGG | + | chr2_4:18046599-18046618 | Msa0318900:intron | 20.0% |
| !! | ACTTTATAAATTTAATCGTC+CGG | - | chr2_4:18046656-18046675 | None:intergenic | 20.0% |
| !! | AAATCAAAATCTCCTTATTA+CGG | + | chr2_4:18046699-18046718 | Msa0318900:intron | 20.0% |
| !!! | ATTACTCTATAGTTTTTTGA+AGG | + | chr2_4:18046776-18046795 | Msa0318900:intron | 20.0% |
| !!! | GTAACGATCTTTTTATTATT+AGG | + | chr2_4:18047177-18047196 | Msa0318900:intron | 20.0% |
| !!! | AAGAATATCAATAGTCTTTT+GGG | - | chr2_4:18047233-18047252 | None:intergenic | 20.0% |
| !!! | TAAGAATATCAATAGTCTTT+TGG | - | chr2_4:18047234-18047253 | None:intergenic | 20.0% |
| !! | TTAAATCCATAAAAGTTAGA+TGG | + | chr2_4:18047338-18047357 | Msa0318900:intron | 20.0% |
| !!! | AATAAACCATCTAACTTTTA+TGG | - | chr2_4:18047347-18047366 | None:intergenic | 20.0% |
| !! | ATCAACTTATTTACGTTAAA+GGG | - | chr2_4:18047502-18047521 | None:intergenic | 20.0% |
| !! | TTAACATTTATCGTTTATGT+CGG | - | chr2_4:18047535-18047554 | None:intergenic | 20.0% |
| !! | TATATCTTTCCTAATTAATC+CGG | - | chr2_4:18047588-18047607 | None:intergenic | 20.0% |
| !! | GAACAAACAAAAATACAATT+AGG | - | chr2_4:18047702-18047721 | None:intergenic | 20.0% |
| !! | TAGTATGTTATATCAATTAG+TGG | - | chr2_4:18047928-18047947 | None:intergenic | 20.0% |
| !!! | AAATGAACTTTTGAAAGAAA+AGG | + | chr2_4:18048118-18048137 | Msa0318900:CDS | 20.0% |
| ! | TCTTAAGTGATATTTAGTAG+AGG | + | chr2_4:18046321-18046340 | Msa0318900:intron | 25.0% |
| !! | AAATTTTTACCACCGTAATA+AGG | - | chr2_4:18046714-18046733 | None:intergenic | 25.0% |
| ! | TCATTAATCCATAATATGTG+CGG | - | chr2_4:18046836-18046855 | None:intergenic | 25.0% |
| ! | TTGTCTCAAAAAAAAGATCT+AGG | - | chr2_4:18047040-18047059 | None:intergenic | 25.0% |
| ! | TGTCAAATATTATAAATGCG+TGG | + | chr2_4:18047078-18047097 | Msa0318900:intron | 25.0% |
| ! | GTCAAATATTATAAATGCGT+GGG | + | chr2_4:18047079-18047098 | Msa0318900:intron | 25.0% |
| ! | TCAAATATTATAAATGCGTG+GGG | + | chr2_4:18047080-18047099 | Msa0318900:intron | 25.0% |
| !! | TGAGATCTTGAGTTTAAAAT+CGG | - | chr2_4:18047470-18047489 | None:intergenic | 25.0% |
| ! | GATCAACTTATTTACGTTAA+AGG | - | chr2_4:18047503-18047522 | None:intergenic | 25.0% |
| !!! | ATATAAGTACCGGATTAATT+AGG | + | chr2_4:18047576-18047595 | Msa0318900:intron | 25.0% |
| ! | TTTACATTTGCCATTCAAAT+CGG | + | chr2_4:18047656-18047675 | Msa0318900:intron | 25.0% |
| ! | TCTTAAGTGATATTTAGTAG+AGG | + | chr2_4:18046321-18046340 | Msa0318900:intron | 25.0% |
| !! | AAATTTTTACCACCGTAATA+AGG | - | chr2_4:18046714-18046733 | None:intergenic | 25.0% |
| ! | TCATTAATCCATAATATGTG+CGG | - | chr2_4:18046836-18046855 | None:intergenic | 25.0% |
| ! | TTGTCTCAAAAAAAAGATCT+AGG | - | chr2_4:18047040-18047059 | None:intergenic | 25.0% |
| ! | TGTCAAATATTATAAATGCG+TGG | + | chr2_4:18047078-18047097 | Msa0318900:intron | 25.0% |
| ! | GTCAAATATTATAAATGCGT+GGG | + | chr2_4:18047079-18047098 | Msa0318900:intron | 25.0% |
| ! | TCAAATATTATAAATGCGTG+GGG | + | chr2_4:18047080-18047099 | Msa0318900:intron | 25.0% |
| !! | TGAGATCTTGAGTTTAAAAT+CGG | - | chr2_4:18047470-18047489 | None:intergenic | 25.0% |
| ! | GATCAACTTATTTACGTTAA+AGG | - | chr2_4:18047503-18047522 | None:intergenic | 25.0% |
| !!! | ATATAAGTACCGGATTAATT+AGG | + | chr2_4:18047576-18047595 | Msa0318900:intron | 25.0% |
| ! | TTTACATTTGCCATTCAAAT+CGG | + | chr2_4:18047656-18047675 | Msa0318900:intron | 25.0% |
| AGTAAACTTGATCTTTGAAC+CGG | - | chr2_4:18046186-18046205 | None:intergenic | 30.0% | |
| CTCGTGTGATTATATATAAG+AGG | - | chr2_4:18046298-18046317 | None:intergenic | 30.0% | |
| TAAGTGATATTTAGTAGAGG+AGG | + | chr2_4:18046324-18046343 | Msa0318900:intron | 30.0% | |
| ! | TTTCGTTTGATAGATTTTGG+AGG | + | chr2_4:18046602-18046621 | Msa0318900:intron | 30.0% |
| !! | TCCTTTTATTTGATTTCGAC+CGG | + | chr2_4:18046634-18046653 | Msa0318900:intron | 30.0% |
| ! | TTACGGTGGTAAAAATTTTG+TGG | + | chr2_4:18046716-18046735 | Msa0318900:intron | 30.0% |
| TCAATCATGTGCAAAACAAA+TGG | - | chr2_4:18046753-18046772 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGCACATGATTG+AGG | + | chr2_4:18046752-18046771 | Msa0318900:intron | 30.0% |
| AAATACATTCATGCAGACAA+TGG | - | chr2_4:18046804-18046823 | None:intergenic | 30.0% | |
| TTTGGATAACGATTTGCAAT+TGG | + | chr2_4:18046934-18046953 | Msa0318900:intron | 30.0% | |
| ! | TTGGTTCTCTTTAAAGATCT+AGG | + | chr2_4:18046953-18046972 | Msa0318900:intron | 30.0% |
| ! | CGATCACAATCTCATTTTAT+CGG | + | chr2_4:18047269-18047288 | Msa0318900:intron | 30.0% |
| !!! | TCACTTTTTTGCTTATGAGT+TGG | - | chr2_4:18047776-18047795 | None:intergenic | 30.0% |
| ATACAAAAGAGCTCAAGTTA+AGG | + | chr2_4:18047847-18047866 | Msa0318900:CDS | 30.0% | |
| GGCATGTAAAAAGAATTGAA+TGG | - | chr2_4:18047907-18047926 | None:intergenic | 30.0% | |
| AGCTGAAATTCAAATGCATT+TGG | + | chr2_4:18048013-18048032 | Msa0318900:CDS | 30.0% | |
| ! | ATTCACGTTTGAAACAACTT+CGG | + | chr2_4:18048090-18048109 | Msa0318900:CDS | 30.0% |
| AGTAAACTTGATCTTTGAAC+CGG | - | chr2_4:18046186-18046205 | None:intergenic | 30.0% | |
| CTCGTGTGATTATATATAAG+AGG | - | chr2_4:18046298-18046317 | None:intergenic | 30.0% | |
| TAAGTGATATTTAGTAGAGG+AGG | + | chr2_4:18046324-18046343 | Msa0318900:intron | 30.0% | |
| ! | TTTCGTTTGATAGATTTTGG+AGG | + | chr2_4:18046602-18046621 | Msa0318900:intron | 30.0% |
| !! | TCCTTTTATTTGATTTCGAC+CGG | + | chr2_4:18046634-18046653 | Msa0318900:intron | 30.0% |
| ! | TTACGGTGGTAAAAATTTTG+TGG | + | chr2_4:18046716-18046735 | Msa0318900:intron | 30.0% |
| TCAATCATGTGCAAAACAAA+TGG | - | chr2_4:18046753-18046772 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGCACATGATTG+AGG | + | chr2_4:18046752-18046771 | Msa0318900:intron | 30.0% |
| AAATACATTCATGCAGACAA+TGG | - | chr2_4:18046804-18046823 | None:intergenic | 30.0% | |
| TTTGGATAACGATTTGCAAT+TGG | + | chr2_4:18046934-18046953 | Msa0318900:intron | 30.0% | |
| ! | TTGGTTCTCTTTAAAGATCT+AGG | + | chr2_4:18046953-18046972 | Msa0318900:intron | 30.0% |
| ! | CGATCACAATCTCATTTTAT+CGG | + | chr2_4:18047269-18047288 | Msa0318900:intron | 30.0% |
| !!! | TCACTTTTTTGCTTATGAGT+TGG | - | chr2_4:18047776-18047795 | None:intergenic | 30.0% |
| ATACAAAAGAGCTCAAGTTA+AGG | + | chr2_4:18047847-18047866 | Msa0318900:CDS | 30.0% | |
| GGCATGTAAAAAGAATTGAA+TGG | - | chr2_4:18047907-18047926 | None:intergenic | 30.0% | |
| AGCTGAAATTCAAATGCATT+TGG | + | chr2_4:18048013-18048032 | Msa0318900:CDS | 30.0% | |
| ! | ATTCACGTTTGAAACAACTT+CGG | + | chr2_4:18048090-18048109 | Msa0318900:CDS | 30.0% |
| GTAAACTTGATCTTTGAACC+GGG | - | chr2_4:18046185-18046204 | None:intergenic | 35.0% | |
| GGTCGAAATCAAATAAAAGG+AGG | - | chr2_4:18046635-18046654 | None:intergenic | 35.0% | |
| TCCGGTCGAAATCAAATAAA+AGG | - | chr2_4:18046638-18046657 | None:intergenic | 35.0% | |
| TCAAAATCTCCTTATTACGG+TGG | + | chr2_4:18046702-18046721 | Msa0318900:intron | 35.0% | |
| TTGTCTAGATTTGTGCTTCA+TGG | + | chr2_4:18047612-18047631 | Msa0318900:intron | 35.0% | |
| !! | TATTGCAAGACCGATTTGAA+TGG | - | chr2_4:18047669-18047688 | None:intergenic | 35.0% |
| TCTCAAGAATGCTACTCAAA+AGG | + | chr2_4:18047971-18047990 | Msa0318900:intron | 35.0% | |
| AAATGCATTTGGAAGCGAAA+AGG | + | chr2_4:18048024-18048043 | Msa0318900:CDS | 35.0% | |
| AATGCATTTGGAAGCGAAAA+GGG | + | chr2_4:18048025-18048044 | Msa0318900:CDS | 35.0% | |
| ! | GTTGTTTCAAACGTGAATCA+CGG | - | chr2_4:18048088-18048107 | None:intergenic | 35.0% |
| AAAATTGAATCCAAGCTACG+TGG | + | chr2_4:18048271-18048290 | Msa0318900:CDS | 35.0% | |
| AAATTGAATCCAAGCTACGT+GGG | + | chr2_4:18048272-18048291 | Msa0318900:CDS | 35.0% | |
| GTAAACTTGATCTTTGAACC+GGG | - | chr2_4:18046185-18046204 | None:intergenic | 35.0% | |
| GGTCGAAATCAAATAAAAGG+AGG | - | chr2_4:18046635-18046654 | None:intergenic | 35.0% | |
| TCCGGTCGAAATCAAATAAA+AGG | - | chr2_4:18046638-18046657 | None:intergenic | 35.0% | |
| TCAAAATCTCCTTATTACGG+TGG | + | chr2_4:18046702-18046721 | Msa0318900:intron | 35.0% | |
| TTGTCTAGATTTGTGCTTCA+TGG | + | chr2_4:18047612-18047631 | Msa0318900:intron | 35.0% | |
| !! | TATTGCAAGACCGATTTGAA+TGG | - | chr2_4:18047669-18047688 | None:intergenic | 35.0% |
| TCTCAAGAATGCTACTCAAA+AGG | + | chr2_4:18047971-18047990 | Msa0318900:intron | 35.0% | |
| AAATGCATTTGGAAGCGAAA+AGG | + | chr2_4:18048024-18048043 | Msa0318900:CDS | 35.0% | |
| AATGCATTTGGAAGCGAAAA+GGG | + | chr2_4:18048025-18048044 | Msa0318900:CDS | 35.0% | |
| ! | GTTGTTTCAAACGTGAATCA+CGG | - | chr2_4:18048088-18048107 | None:intergenic | 35.0% |
| AAAATTGAATCCAAGCTACG+TGG | + | chr2_4:18048271-18048290 | Msa0318900:CDS | 35.0% | |
| AAATTGAATCCAAGCTACGT+GGG | + | chr2_4:18048272-18048291 | Msa0318900:CDS | 35.0% | |
| AGATTAGCGCCACCTAAAAA+TGG | + | chr2_4:18046477-18046496 | Msa0318900:intron | 40.0% | |
| !! | GGAAAAGCTCCATTTTTAGG+TGG | - | chr2_4:18046489-18046508 | None:intergenic | 40.0% |
| !! | CGAGGAAAAGCTCCATTTTT+AGG | - | chr2_4:18046492-18046511 | None:intergenic | 40.0% |
| ATTCTGCTGCTCAAAGATCT+AGG | + | chr2_4:18046514-18046533 | Msa0318900:intron | 40.0% | |
| TCCATAATATGTGCGGTCAT+TGG | - | chr2_4:18046829-18046848 | None:intergenic | 40.0% | |
| ! | TTATCGTTTATGTCGGTGCT+AGG | - | chr2_4:18047528-18047547 | None:intergenic | 40.0% |
| TTGAGCCAAAACAAGTGAAC+TGG | + | chr2_4:18047816-18047835 | Msa0318900:CDS | 40.0% | |
| ! | AACCACCAGTTCACTTGTTT+TGG | - | chr2_4:18047824-18047843 | None:intergenic | 40.0% |
| TTTGGAAGCGAAAAGGGAAA+TGG | + | chr2_4:18048031-18048050 | Msa0318900:CDS | 40.0% | |
| GTTCCATCTGATGATCTTTC+GGG | - | chr2_4:18048335-18048354 | None:intergenic | 40.0% | |
| GGTTCCATCTGATGATCTTT+CGG | - | chr2_4:18048336-18048355 | None:intergenic | 40.0% | |
| AGATTAGCGCCACCTAAAAA+TGG | + | chr2_4:18046477-18046496 | Msa0318900:intron | 40.0% | |
| !! | GGAAAAGCTCCATTTTTAGG+TGG | - | chr2_4:18046489-18046508 | None:intergenic | 40.0% |
| !! | CGAGGAAAAGCTCCATTTTT+AGG | - | chr2_4:18046492-18046511 | None:intergenic | 40.0% |
| ATTCTGCTGCTCAAAGATCT+AGG | + | chr2_4:18046514-18046533 | Msa0318900:intron | 40.0% | |
| TCCATAATATGTGCGGTCAT+TGG | - | chr2_4:18046829-18046848 | None:intergenic | 40.0% | |
| ! | TTATCGTTTATGTCGGTGCT+AGG | - | chr2_4:18047528-18047547 | None:intergenic | 40.0% |
| TTGAGCCAAAACAAGTGAAC+TGG | + | chr2_4:18047816-18047835 | Msa0318900:CDS | 40.0% | |
| ! | AACCACCAGTTCACTTGTTT+TGG | - | chr2_4:18047824-18047843 | None:intergenic | 40.0% |
| TTTGGAAGCGAAAAGGGAAA+TGG | + | chr2_4:18048031-18048050 | Msa0318900:CDS | 40.0% | |
| GTTCCATCTGATGATCTTTC+GGG | - | chr2_4:18048335-18048354 | None:intergenic | 40.0% | |
| GGTTCCATCTGATGATCTTT+CGG | - | chr2_4:18048336-18048355 | None:intergenic | 40.0% | |
| GCCAATGACCGCACATATTA+TGG | + | chr2_4:18046825-18046844 | Msa0318900:intron | 45.0% | |
| AGTGAAATAGCCGAAGAGCT+TGG | + | chr2_4:18047791-18047810 | Msa0318900:CDS | 45.0% | |
| AGCCAAAACAAGTGAACTGG+TGG | + | chr2_4:18047819-18047838 | Msa0318900:CDS | 45.0% | |
| CTCTCACTGGAGTTGAAGTT+AGG | + | chr2_4:18048305-18048324 | Msa0318900:CDS | 45.0% | |
| CTTCCCGAAAGATCATCAGA+TGG | + | chr2_4:18048329-18048348 | Msa0318900:CDS | 45.0% | |
| GCCAATGACCGCACATATTA+TGG | + | chr2_4:18046825-18046844 | Msa0318900:intron | 45.0% | |
| AGTGAAATAGCCGAAGAGCT+TGG | + | chr2_4:18047791-18047810 | Msa0318900:CDS | 45.0% | |
| AGCCAAAACAAGTGAACTGG+TGG | + | chr2_4:18047819-18047838 | Msa0318900:CDS | 45.0% | |
| CTCTCACTGGAGTTGAAGTT+AGG | + | chr2_4:18048305-18048324 | Msa0318900:CDS | 45.0% | |
| CTTCCCGAAAGATCATCAGA+TGG | + | chr2_4:18048329-18048348 | Msa0318900:CDS | 45.0% | |
| !!! | ATTTTTTAATTAAAAAAATG+GGG | - | chr2_4:18046245-18046264 | None:intergenic | 5.0% |
| !! | TTAATTAAAAAATTAATCTT+TGG | + | chr2_4:18046252-18046271 | Msa0318900:intron | 5.0% |
| !! | TTTAAAAAAAATAAAACTAA+TGG | - | chr2_4:18047016-18047035 | None:intergenic | 5.0% |
| !!! | ATTTTTTAATTAAAAAAATG+GGG | - | chr2_4:18046245-18046264 | None:intergenic | 5.0% |
| !! | TTAATTAAAAAATTAATCTT+TGG | + | chr2_4:18046252-18046271 | Msa0318900:intron | 5.0% |
| !! | TTTAAAAAAAATAAAACTAA+TGG | - | chr2_4:18047016-18047035 | None:intergenic | 5.0% |
| CTTTGAGCAGCAGAATGACG+AGG | - | chr2_4:18046510-18046529 | None:intergenic | 50.0% | |
| TGGCTCAAGACCAAGCTCTT+CGG | - | chr2_4:18047804-18047823 | None:intergenic | 50.0% | |
| AACGTGAATCACGGCATGCT+TGG | - | chr2_4:18048079-18048098 | None:intergenic | 50.0% | |
| CTTTGAGCAGCAGAATGACG+AGG | - | chr2_4:18046510-18046529 | None:intergenic | 50.0% | |
| TGGCTCAAGACCAAGCTCTT+CGG | - | chr2_4:18047804-18047823 | None:intergenic | 50.0% | |
| AACGTGAATCACGGCATGCT+TGG | - | chr2_4:18048079-18048098 | None:intergenic | 50.0% | |
| TCCAAGCTACGTGGGAGAAG+AGG | + | chr2_4:18048280-18048299 | Msa0318900:CDS | 55.0% | |
| TCCTCTTCTCCCACGTAGCT+TGG | - | chr2_4:18048284-18048303 | None:intergenic | 55.0% | |
| GGGAGAAGAGGAACTCTCAC+TGG | + | chr2_4:18048292-18048311 | Msa0318900:CDS | 55.0% | |
| TCCAAGCTACGTGGGAGAAG+AGG | + | chr2_4:18048280-18048299 | Msa0318900:CDS | 55.0% | |
| TCCTCTTCTCCCACGTAGCT+TGG | - | chr2_4:18048284-18048303 | None:intergenic | 55.0% | |
| GGGAGAAGAGGAACTCTCAC+TGG | + | chr2_4:18048292-18048311 | Msa0318900:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 18046178 | 18048364 | 18046178 | ID=Msa0318900;Name=Msa0318900 |
| chr2_4 | mRNA | 18046178 | 18048364 | 18046178 | ID=Msa0318900-mRNA-1;Parent=Msa0318900;Name=Msa0318900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.75|0.66|0.75|4|0|128 |
| chr2_4 | exon | 18046178 | 18046185 | 18046178 | ID=Msa0318900-mRNA-1:exon:6734;Parent=Msa0318900-mRNA-1 |
| chr2_4 | exon | 18047751 | 18047868 | 18047751 | ID=Msa0318900-mRNA-1:exon:6735;Parent=Msa0318900-mRNA-1 |
| chr2_4 | exon | 18047978 | 18048139 | 18047978 | ID=Msa0318900-mRNA-1:exon:6736;Parent=Msa0318900-mRNA-1 |
| chr2_4 | exon | 18048266 | 18048364 | 18048266 | ID=Msa0318900-mRNA-1:exon:6737;Parent=Msa0318900-mRNA-1 |
| chr2_4 | CDS | 18046178 | 18046185 | 18046178 | ID=Msa0318900-mRNA-1:cds;Parent=Msa0318900-mRNA-1 |
| chr2_4 | CDS | 18047751 | 18047868 | 18047751 | ID=Msa0318900-mRNA-1:cds;Parent=Msa0318900-mRNA-1 |
| chr2_4 | CDS | 18047978 | 18048139 | 18047978 | ID=Msa0318900-mRNA-1:cds;Parent=Msa0318900-mRNA-1 |
| chr2_4 | CDS | 18048266 | 18048364 | 18048266 | ID=Msa0318900-mRNA-1:cds;Parent=Msa0318900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
