AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319900 MtrunA17_Chr2g0294671 95.968 496 16 1 69 560 1 496 0.0 971
Msa0319900 MtrunA17_Chr6g0448821 30.078 256 174 3 295 546 102 356 7.15e-31 124
Msa0319900 MtrunA17_Chr5g0417641 35.096 208 129 5 345 547 87 293 2.71e-29 117
Msa0319900 MtrunA17_Chr5g0428941 29.455 275 184 6 281 548 213 484 3.99e-29 121
Msa0319900 MtrunA17_Chr5g0428941 23.404 282 167 7 275 552 139 375 3.14e-13 72.4
Msa0319900 MtrunA17_Chr1g0212691 29.474 285 189 6 275 551 175 455 1.97e-28 119
Msa0319900 MtrunA17_Chr1g0212691 23.485 264 176 5 253 494 67 326 1.46e-13 73.2
Msa0319900 MtrunA17_Chr4g0034981 24.913 289 208 7 275 556 309 595 1.96e-26 114
Msa0319900 MtrunA17_Chr4g0034981 25.292 257 177 6 308 554 271 522 4.59e-20 94.0
Msa0319900 MtrunA17_Chr4g0034981 29.949 197 135 3 272 466 378 573 8.43e-15 77.4
Msa0319900 MtrunA17_Chr4g0043941 26.103 272 195 4 281 546 47 318 3.13e-26 109
Msa0319900 MtrunA17_Chr4g0043941 24.424 217 153 3 351 559 10 223 1.92e-13 71.6
Msa0319900 MtrunA17_Chr4g0043941 24.242 264 187 5 164 420 3 260 1.23e-12 69.3
Msa0319900 MtrunA17_Chr2g0304101 30.992 242 152 6 325 552 70 310 4.46e-26 108
Msa0319900 MtrunA17_Chr5g0445491 31.441 229 142 6 278 497 229 451 3.24e-25 109
Msa0319900 MtrunA17_Chr5g0445491 27.468 233 139 7 334 542 177 403 1.76e-17 85.5
Msa0319900 MtrunA17_Chr5g0445491 30.052 193 130 4 271 459 258 449 5.70e-17 84.0
Msa0319900 MtrunA17_Chr2g0311181 29.778 225 146 5 331 550 86 303 1.15e-22 99.4
Msa0319900 MtrunA17_Chr3g0127891 25.000 324 191 12 279 558 187 502 1.75e-20 94.7
Msa0319900 MtrunA17_Chr8g0391881 27.907 258 174 6 274 523 121 374 3.04e-20 92.8
Msa0319900 MtrunA17_Chr7g0250261 29.756 205 132 5 351 546 78 279 5.33e-16 78.6
Msa0319900 MtrunA17_Chr0c29g0494001 29.756 205 132 5 351 546 78 279 5.33e-16 78.6
Msa0319900 MtrunA17_Chr4g0067141 26.103 272 170 9 279 539 81 332 1.33e-12 69.7
Msa0319900 MtrunA17_Chr2g0296171 25.498 251 174 7 279 522 99 343 7.57e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319900 AT4G14605.2 63.616 448 152 4 110 547 22 468 0.0 558
Msa0319900 AT4G14605.1 63.616 448 152 4 110 547 22 468 0.0 558
Msa0319900 AT2G21710.1 28.912 294 194 7 275 558 316 604 9.31e-33 133
Msa0319900 AT2G21710.1 30.366 191 130 3 272 460 385 574 2.86e-13 73.2
Msa0319900 AT2G21710.1 28.114 281 182 7 141 420 306 567 3.32e-13 72.8
Msa0319900 AT2G44020.1 27.726 321 186 6 274 551 143 460 2.40e-29 122
Msa0319900 AT4G38160.4 27.372 274 186 5 285 548 52 322 5.87e-27 112
Msa0319900 AT4G38160.4 30.719 153 103 3 271 420 110 262 4.80e-14 73.9
Msa0319900 AT4G38160.1 27.372 274 186 5 285 548 52 322 5.87e-27 112
Msa0319900 AT4G38160.1 30.719 153 103 3 271 420 110 262 4.80e-14 73.9
Msa0319900 AT1G78930.1 28.125 256 179 3 295 546 320 574 6.70e-27 115
Msa0319900 AT4G38160.2 27.372 274 186 5 285 548 52 322 1.14e-26 112
Msa0319900 AT4G38160.2 30.719 153 103 3 271 420 110 262 5.82e-14 73.9
Msa0319900 AT4G38160.3 27.372 274 186 5 285 548 52 322 1.80e-26 111
Msa0319900 AT4G38160.3 30.719 153 103 3 271 420 110 262 8.71e-14 73.6
Msa0319900 AT2G34620.1 30.833 240 151 6 325 550 56 294 4.84e-25 105
Msa0319900 AT2G34620.1 28.972 214 143 7 253 462 66 274 2.25e-11 65.5
Msa0319900 AT2G21710.2 28.049 246 162 7 275 510 316 556 1.05e-23 105
Msa0319900 AT2G21710.2 25.229 218 156 2 311 521 245 462 4.14e-15 78.6
Msa0319900 AT2G21710.2 28.685 251 162 6 141 390 306 540 4.84e-13 72.4
Msa0319900 AT2G21710.2 31.847 157 104 3 272 426 385 540 6.05e-12 68.6
Msa0319900 AT2G03050.2 32.039 206 129 6 353 550 71 273 1.22e-23 101
Msa0319900 AT2G03050.2 25.346 217 140 8 251 462 54 253 6.07e-11 63.9
Msa0319900 AT2G03050.1 32.039 206 129 6 353 550 70 272 1.27e-23 101
Msa0319900 AT2G03050.1 25.346 217 140 8 251 462 53 252 6.71e-11 63.9
Msa0319900 AT2G21710.3 28.163 245 161 7 275 509 316 555 1.97e-23 104
Msa0319900 AT2G21710.3 25.229 218 156 2 311 521 245 462 2.95e-15 79.3
Msa0319900 AT2G21710.3 28.685 251 162 6 141 390 306 540 4.85e-13 72.4
Msa0319900 AT2G21710.3 31.847 157 104 3 272 426 385 540 5.08e-12 68.9
Msa0319900 AT4G02990.2 26.224 286 193 7 274 548 214 492 1.51e-22 102
Msa0319900 AT4G02990.2 25.909 220 145 4 253 458 115 330 8.16e-15 77.8
Msa0319900 AT4G02990.1 26.224 286 193 7 274 548 214 492 1.51e-22 102
Msa0319900 AT4G02990.1 25.909 220 145 4 253 458 115 330 8.16e-15 77.8
Msa0319900 AT3G18870.1 27.962 211 128 5 350 546 68 268 5.29e-20 90.9
Msa0319900 AT5G55580.1 25.941 239 162 7 279 505 223 458 5.80e-19 90.5
Msa0319900 AT5G55580.1 28.497 193 135 3 271 460 251 443 5.60e-18 87.4
Msa0319900 AT5G55580.1 23.529 255 185 7 277 523 186 438 5.60e-16 81.3
Msa0319900 AT5G55580.1 26.267 217 131 7 349 542 186 396 8.82e-13 71.2
Msa0319900 AT5G55580.1 25.000 188 131 5 351 528 223 410 2.44e-12 69.7
Msa0319900 AT5G55580.2 25.941 239 162 7 279 505 117 352 7.42e-19 89.4
Msa0319900 AT5G55580.2 28.497 193 135 3 271 460 145 337 5.69e-18 86.7
Msa0319900 AT5G55580.2 23.529 255 185 7 277 523 80 332 6.02e-16 80.5
Msa0319900 AT5G55580.2 26.267 217 131 7 349 542 80 290 7.52e-13 70.9
Msa0319900 AT5G55580.2 25.000 188 131 5 351 528 117 304 2.18e-12 69.3
Msa0319900 AT2G36000.1 29.082 196 126 5 362 550 122 311 1.50e-17 84.7
Msa0319900 AT2G36000.2 29.082 196 126 5 362 550 122 311 1.94e-17 84.0
Msa0319900 AT5G55580.3 27.097 155 110 3 279 430 223 377 2.84e-14 75.5
Msa0319900 AT5G55580.3 24.747 198 128 6 349 531 186 377 3.98e-12 68.6
Msa0319900 AT5G54180.1 24.555 281 171 9 272 548 247 490 1.84e-13 73.2
Msa0319900 AT1G79220.1 30.769 143 92 3 275 415 149 286 1.01e-11 67.4
Msa0319900 AT1G21150.3 24.815 270 181 7 279 539 56 312 3.41e-11 65.5
Msa0319900 AT1G21150.1 24.815 270 181 7 279 539 92 348 6.47e-11 64.7
Msa0319900 AT1G62110.1 25.822 213 146 8 315 522 195 400 9.56e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAACCAACTCAGATTT+TGG 0.122678 2_4:-19994828 None:intergenic
CACAAAACTTGGTACCTTTC+AGG 0.146574 2_4:+19993811 Msa0319900:CDS
TTCAATTGTCCACAAAATTT+TGG 0.188550 2_4:+19994639 Msa0319900:CDS
ATGAAATTCTTTGAATCTTT+AGG 0.194746 2_4:+19994381 Msa0319900:CDS
TATTGAAAATTGAGACTTTC+AGG 0.207273 2_4:+19995049 Msa0319900:three_prime_UTR
TGAAATTCTTTGAATCTTTA+GGG 0.230459 2_4:+19994382 Msa0319900:CDS
GAGACTTTCAGGCATGTTTC+AGG 0.242717 2_4:+19995060 Msa0319900:three_prime_UTR
GGATACACTGTGGAAGAAAT+TGG 0.259712 2_4:+19994714 Msa0319900:CDS
AAAGAAAATGCAAGTTGATT+AGG 0.286687 2_4:+19994992 Msa0319900:CDS
TTCTCATTATCCTCACTAAA+AGG 0.287136 2_4:+19994313 Msa0319900:CDS
GTGGTGAGTTGGGTGGTGGG+TGG 0.293971 2_4:-19992305 None:intergenic
TTATCCTTAACAGTTGGATT+TGG 0.302266 2_4:-19994027 None:intergenic
GCTGCTGCTGGTGGTGAGTT+GGG 0.304150 2_4:-19992315 None:intergenic
TGCAACTTTGTCACACTCTT+GGG 0.313682 2_4:+19991274 Msa0319900:CDS
TTGTGTTACGGGCTTTATAT+TGG 0.339450 2_4:-19994676 None:intergenic
TTGCAACTTTGTCACACTCT+TGG 0.345653 2_4:+19991273 Msa0319900:CDS
GAGAGAAGGTGATCAATAAA+AGG 0.346069 2_4:-19993772 None:intergenic
GTAAGAACAACGGCAGAAAT+TGG 0.346612 2_4:-19992278 None:intergenic
GCTGGTGGTGAGTTGGGTGG+TGG 0.346750 2_4:-19992309 None:intergenic
GGGATTATGATTATGAGATA+TGG 0.366062 2_4:+19994735 Msa0319900:CDS
GCGAAAAGTTGCAGTTATAC+TGG 0.367418 2_4:+19995140 Msa0319900:three_prime_UTR
TGCTGCTGCTGGTGGTGAGT+TGG 0.372617 2_4:-19992316 None:intergenic
GAAAGTACATGGATAAAGAT+TGG 0.383820 2_4:+19991247 None:intergenic
CTGAGAATTTGATGCCGAAA+TGG 0.384614 2_4:+19994781 Msa0319900:CDS
TGGTGAGTTGGGTGGTGGGT+GGG 0.386138 2_4:-19992304 None:intergenic
TCCAACTGTTAAGGATAAAT+CGG 0.393000 2_4:+19994032 Msa0319900:CDS
AAGTGATTAGAGGATGCTTT+TGG 0.393419 2_4:+19995359 Msa0319900:three_prime_UTR
TTGACGACGGAGGAAGGTTC+CGG 0.398790 2_4:-19992241 None:intergenic
TAAAGATTCAAAGAATTTCA+TGG 0.398908 2_4:-19994379 None:intergenic
CTATCCAAATCCAACTGTTA+AGG 0.401598 2_4:+19994023 Msa0319900:CDS
TTTACCCTCCAAACTATAGT+AGG 0.403290 2_4:-19994238 None:intergenic
ACACTGTAACTAACAATAGT+TGG 0.403606 2_4:-19994549 None:intergenic
AGCTTACAACTCTTGAGATC+AGG 0.409547 2_4:+19993929 Msa0319900:CDS
CTGGTGGTGAGTTGGGTGGT+GGG 0.414930 2_4:-19992308 None:intergenic
CTAGGACTAGGAGGTGGAAT+TGG 0.414937 2_4:-19994060 None:intergenic
GAGTTGGGTGGTGGGTGGGT+TGG 0.423516 2_4:-19992300 None:intergenic
GAGTGGAATATCACTGCAAA+TGG 0.423567 2_4:-19992367 None:intergenic
ATAGCAGCGGGTGCTGCTGC+TGG 0.425422 2_4:-19992327 None:intergenic
AAACTATAGTAGGCAAAAGC+TGG 0.426748 2_4:-19994228 None:intergenic
GTCGCATAATAGTCCTAATC+TGG 0.437513 2_4:-19994200 None:intergenic
GCAATGTACTTCCGTTCTCT+AGG 0.440973 2_4:+19994594 Msa0319900:CDS
AACCCTATTAGCAGCAGAAA+AGG 0.445757 2_4:+19993663 Msa0319900:CDS
TAGAGTGAAGCTTTGAGAGA+AGG 0.446835 2_4:-19993786 None:intergenic
CGTGGACCTTGTTCCAAGCT+TGG 0.448986 2_4:-19991325 None:intergenic
CAATGTACTTCCGTTCTCTA+GGG 0.451044 2_4:+19994595 Msa0319900:CDS
TGCTATAAGTTAGCAGGGCT+GGG 0.457629 2_4:-19994443 None:intergenic
GTGCTATAAGTTAGCAGGGC+TGG 0.458589 2_4:-19994444 None:intergenic
AAAGTACATGGATAAAGATT+GGG 0.459936 2_4:+19991248 None:intergenic
TTTGTAAAATAAGTGATTAG+AGG 0.461240 2_4:+19995349 Msa0319900:three_prime_UTR
GTGGACAATTGAATAGAAGA+AGG 0.464746 2_4:-19994629 None:intergenic
TCCTCATATTGCTTATCTGA+TGG 0.465202 2_4:+19994158 Msa0319900:CDS
GGTGAGATTACTGTTGAATC+AGG 0.465548 2_4:+19994920 Msa0319900:CDS
TGAGAATTTGATGCCGAAAT+GGG 0.466974 2_4:+19994782 Msa0319900:CDS
TTGATGCTATTTATTAAATG+AGG 0.468541 2_4:+19995399 Msa0319900:three_prime_UTR
CTCAACTTCCTTCCTCTACA+AGG 0.472025 2_4:+19993467 Msa0319900:CDS
GATACACTGTGGAAGAAATT+GGG 0.474524 2_4:+19994715 Msa0319900:CDS
GAATGAATATTGACCAGATT+AGG 0.481227 2_4:+19994187 Msa0319900:CDS
GGACGAAGATTTCCCTCAGC+AGG 0.482343 2_4:-19994138 None:intergenic
ACGGCAGAAATTGGCTTTGA+CGG 0.484495 2_4:-19992269 None:intergenic
TCTGCGTGCTATAAGTTAGC+AGG 0.485788 2_4:-19994449 None:intergenic
TCCGATTTATCCTTAACAGT+TGG 0.491190 2_4:-19994033 None:intergenic
TCTGCTGCTAATAGGGTTGG+AGG 0.494961 2_4:-19993658 None:intergenic
AAACAATGTTAATACAGCCT+TGG 0.497710 2_4:-19993692 None:intergenic
ACTAAAAGGCCTCAATTATG+TGG 0.498259 2_4:+19994327 Msa0319900:CDS
CACTGTAACTAACAATAGTT+GGG 0.500646 2_4:-19994548 None:intergenic
GGATTACCCAAAATCTGAGT+TGG 0.505092 2_4:+19994821 Msa0319900:CDS
AGGGGTTGACAAGGAACAAT+GGG 0.507393 2_4:+19994401 Msa0319900:CDS
AAGTTAGCAGGGCTGGGAAA+CGG 0.513243 2_4:-19994437 None:intergenic
CGTTCTCTAGGGGTTGATGT+TGG 0.515834 2_4:+19994606 Msa0319900:CDS
CTTCTGAGACACCAAATTCG+CGG 0.517645 2_4:-19994497 None:intergenic
TGCAATAACAAACATAGCAG+CGG 0.520918 2_4:-19992340 None:intergenic
TTGCAGTTATACTGGAACAT+AGG 0.526011 2_4:+19995148 Msa0319900:three_prime_UTR
TTCACTCTAAACACAAAACT+TGG 0.527791 2_4:+19993800 Msa0319900:CDS
ATTGTGGGGTGGTTGAATTG+AGG 0.533017 2_4:-19992418 None:intergenic
GCAGCGGGTGCTGCTGCTGG+TGG 0.534551 2_4:-19992324 None:intergenic
AACTATAGTAGGCAAAAGCT+GGG 0.542556 2_4:-19994227 None:intergenic
TTTGCCTACTATAGTTTGGA+GGG 0.546380 2_4:+19994234 Msa0319900:CDS
AAGAAGACCCTTGTAGAGGA+AGG 0.547271 2_4:-19993475 None:intergenic
TCCATCAGATAAGCAATATG+AGG 0.550329 2_4:-19994159 None:intergenic
GCTGCTGGTGGTGAGTTGGG+TGG 0.559034 2_4:-19992312 None:intergenic
GCAGAAATTGGCTTTGACGG+TGG 0.565019 2_4:-19992266 None:intergenic
TTAGAGTCTACCGCTGGACT+AGG 0.566955 2_4:-19994078 None:intergenic
AGCAGAAAAGGAAGAAGCCA+AGG 0.567349 2_4:+19993675 Msa0319900:CDS
GCTTACAACTCTTGAGATCA+GGG 0.568117 2_4:+19993930 Msa0319900:CDS
GATTCAAAGAATTTCATGGT+GGG 0.572446 2_4:-19994375 None:intergenic
GCAACTTTGTCACACTCTTG+GGG 0.574934 2_4:+19991275 Msa0319900:CDS
TAGTGTGGAATGGAAATTGT+GGG 0.575697 2_4:-19992433 None:intergenic
GCATGTTTCAGGTCAGAAGA+TGG 0.576797 2_4:+19995071 Msa0319900:three_prime_UTR
GCAATAACAAACATAGCAGC+GGG 0.576882 2_4:-19992339 None:intergenic
AGAAATTCTAGTGGATGTAG+TGG 0.577348 2_4:+19993996 Msa0319900:CDS
AATGTACTTCCGTTCTCTAG+GGG 0.585781 2_4:+19994596 Msa0319900:CDS
ACTTTCTTAGAGTCTACCGC+TGG 0.586538 2_4:-19994084 None:intergenic
GAAATTCTTTGAATCTTTAG+GGG 0.590570 2_4:+19994383 Msa0319900:CDS
CATAGGTCGAACGATAACTT+CGG 0.591001 2_4:+19995165 Msa0319900:three_prime_UTR
TAATAAATAGCATCAAAACC+TGG 0.592850 2_4:-19995392 None:intergenic
GGAGGGTAAAATTAAGCCAG+TGG 0.594688 2_4:+19994251 Msa0319900:CDS
TGAATCTTTAGGGGTTGACA+AGG 0.598289 2_4:+19994392 Msa0319900:CDS
AGAAAAGAAGACCCTTGTAG+AGG 0.600416 2_4:-19993479 None:intergenic
CAAGCTTGGAACAAGGTCCA+CGG 0.601728 2_4:+19991326 Msa0319900:CDS
AAGCTTGGAACAAGGTCCAC+GGG 0.602981 2_4:+19991327 Msa0319900:CDS
ATTGCTTATCTGATGGAACT+CGG 0.604771 2_4:+19994165 Msa0319900:CDS
AGACTGATTCCACATAATTG+AGG 0.610049 2_4:-19994336 None:intergenic
TATTGTTAGTTACAGTGTAG+AGG 0.611669 2_4:+19994554 Msa0319900:CDS
ATAGGTCGAACGATAACTTC+GGG 0.612763 2_4:+19995166 Msa0319900:three_prime_UTR
TAGTAGCAACCAAACCTGAA+AGG 0.613581 2_4:-19993825 None:intergenic
TAGGGGTTGACAAGGAACAA+TGG 0.616153 2_4:+19994400 Msa0319900:CDS
CAACATCAACCCCTAGAGAA+CGG 0.618334 2_4:-19994605 None:intergenic
CTGCGTGCTATAAGTTAGCA+GGG 0.619373 2_4:-19994448 None:intergenic
GAATCACTTTACGAAGAGCA+TGG 0.623459 2_4:+19993973 Msa0319900:CDS
TATACCACTCACTCGAGACA+CGG 0.626260 2_4:-19994112 None:intergenic
ACCTCCTAGTCCTAGTCCAG+CGG 0.630206 2_4:+19994068 Msa0319900:CDS
GACGAAGATTTCCCTCAGCA+GGG 0.635800 2_4:-19994137 None:intergenic
ATAGTGTGGAATGGAAATTG+TGG 0.635891 2_4:-19992434 None:intergenic
TCTACCGCTGGACTAGGACT+AGG 0.636230 2_4:-19994072 None:intergenic
ACGACGGAGGAAGGTTCCGG+TGG 0.638447 2_4:-19992238 None:intergenic
GGTGTCTCAGAAGAGAACAT+AGG 0.641929 2_4:+19994507 Msa0319900:CDS
AAAGCCGTGTCTCGAGTGAG+TGG 0.646198 2_4:+19994108 Msa0319900:CDS
AGAGCATGGAGAAATTCTAG+TGG 0.648996 2_4:+19993987 Msa0319900:CDS
GTGGAATGGAAATTGTGGGG+TGG 0.649764 2_4:-19992429 None:intergenic
GCTGGACTAGGACTAGGAGG+TGG 0.650924 2_4:-19994066 None:intergenic
GAGTGGTATAGACCCTGCTG+AGG 0.656302 2_4:+19994125 Msa0319900:CDS
GAACGGAAGTACATTGCTGT+CGG 0.657257 2_4:-19994588 None:intergenic
TCAACTTCCTTCCTCTACAA+GGG 0.663747 2_4:+19993468 Msa0319900:CDS
AGTGGTATAGACCCTGCTGA+GGG 0.666006 2_4:+19994126 Msa0319900:CDS
ACCGCTGGACTAGGACTAGG+AGG 0.679156 2_4:-19994069 None:intergenic
AGATTCAAAGAATTTCATGG+TGG 0.685200 2_4:-19994376 None:intergenic
AGTGTGGAATGGAAATTGTG+GGG 0.702982 2_4:-19992432 None:intergenic
GGGTGGGTTGGTAAGAACAA+CGG 0.704819 2_4:-19992288 None:intergenic
CTTGGAGAGAGGATACACTG+TGG 0.783252 2_4:+19994704 Msa0319900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTCTGAATATTTAT+AGG + chr2_4:19992133-19992152 Msa0319900:intron 10.0%
!! AAAAAATTAAATAAGTCAAA+CGG + chr2_4:19993131-19993150 Msa0319900:intron 10.0%
!! TATAATTTACAAAGAAAATG+AGG + chr2_4:19991700-19991719 Msa0319900:intron 15.0%
!!! TAGTTTTTACATACAAAAAT+TGG + chr2_4:19991897-19991916 Msa0319900:intron 15.0%
!!! AAAATTTCCATCAATATTTT+TGG - chr2_4:19992049-19992068 None:intergenic 15.0%
!! TCATGTTTAATTAAGTAAAT+AGG - chr2_4:19992160-19992179 None:intergenic 15.0%
!! ATTAAAATGTGTAAAATGAA+AGG - chr2_4:19992529-19992548 None:intergenic 15.0%
!!! AACTTTTTGTATTCAATAAT+TGG + chr2_4:19992805-19992824 Msa0319900:intron 15.0%
!! CAAAAAAAAAAACAACTTAT+AGG - chr2_4:19993168-19993187 None:intergenic 15.0%
!!! ATAATGAGAATTTTTTCTTT+TGG - chr2_4:19994303-19994322 None:intergenic 15.0%
!!! TGTTTTTTCTTTTTCTTTTT+CGG + chr2_4:19995101-19995120 Msa0319900:three_prime_UTR 15.0%
!! AAACTAAGAAAGAAAACTAA+TGG - chr2_4:19991438-19991457 None:intergenic 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr2_4:19991957-19991976 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr2_4:19991958-19991977 None:intergenic 20.0%
!!! AAGTATGGTTTTATTTTGTA+GGG - chr2_4:19991988-19992007 None:intergenic 20.0%
!!! AAAGTATGGTTTTATTTTGT+AGG - chr2_4:19991989-19992008 None:intergenic 20.0%
!!! ACATTTTTCTTAAGCATTTT+AGG + chr2_4:19992021-19992040 Msa0319900:intron 20.0%
!!! CATTTTTCTTAAGCATTTTA+GGG + chr2_4:19992022-19992041 Msa0319900:intron 20.0%
!!! TATTGATGGAAATTTTTGAT+AGG + chr2_4:19992053-19992072 Msa0319900:intron 20.0%
!!! AGAAACCGATTTTATTTTAT+AGG + chr2_4:19992104-19992123 Msa0319900:intron 20.0%
!!! GAAACCGATTTTATTTTATA+GGG + chr2_4:19992105-19992124 Msa0319900:intron 20.0%
!! TAGTCCCTATAAAATAAAAT+CGG - chr2_4:19992112-19992131 None:intergenic 20.0%
!! AAATGAAAGGATGAAAAAAA+AGG - chr2_4:19992516-19992535 None:intergenic 20.0%
!! AATTCTCAATAAAGAAGATA+AGG + chr2_4:19992553-19992572 Msa0319900:intron 20.0%
!! ATTCTCAATAAAGAAGATAA+GGG + chr2_4:19992554-19992573 Msa0319900:intron 20.0%
!! CTAATACAATATTGCTATAT+TGG - chr2_4:19992757-19992776 None:intergenic 20.0%
!! CAATATAGCAATATTGTATT+AGG + chr2_4:19992755-19992774 Msa0319900:intron 20.0%
!!! ATTCAATAATTGGTTGTTTT+CGG + chr2_4:19992815-19992834 Msa0319900:intron 20.0%
!!! TAAAAAATAAAAGTGCTTCT+AGG + chr2_4:19993051-19993070 Msa0319900:intron 20.0%
!!! TAACATTGTTTTTGAAGAAA+CGG + chr2_4:19993704-19993723 Msa0319900:CDS 20.0%
!! TAAAGATTCAAAGAATTTCA+TGG - chr2_4:19994382-19994401 None:intergenic 20.0%
!! ATGAAATTCTTTGAATCTTT+AGG + chr2_4:19994381-19994400 Msa0319900:CDS 20.0%
!! TGAAATTCTTTGAATCTTTA+GGG + chr2_4:19994382-19994401 Msa0319900:CDS 20.0%
!!! AAAGTCTCAATTTTCAATAT+CGG - chr2_4:19995048-19995067 None:intergenic 20.0%
!! AAAAAATAAAAATTGGTTGC+AGG - chr2_4:19995260-19995279 None:intergenic 20.0%
!!! AACCAATTTTTATTTTTTGC+AGG + chr2_4:19995262-19995281 Msa0319900:three_prime_UTR 20.0%
!! ATCCTGCAAAAAATAAAAAT+TGG - chr2_4:19995267-19995286 None:intergenic 20.0%
!! TTTGTAAAATAAGTGATTAG+AGG + chr2_4:19995349-19995368 Msa0319900:three_prime_UTR 20.0%
!!! TTGATGCTATTTATTAAATG+AGG + chr2_4:19995399-19995418 Msa0319900:three_prime_UTR 20.0%
!! GTTTTACCATCACAAATTTT+TGG - chr2_4:19991873-19991892 None:intergenic 25.0%
!!! ATCTTTATTGGTTTTAAGAG+TGG - chr2_4:19992387-19992406 None:intergenic 25.0%
!! GAGAAAGTTTTCATCTTTAT+TGG - chr2_4:19992399-19992418 None:intergenic 25.0%
! TAAGAAGTTAGTTGTTTATC+AGG + chr2_4:19992635-19992654 Msa0319900:intron 25.0%
! CCTAATCCAAATTTAAGAAT+CGG + chr2_4:19992686-19992705 Msa0319900:intron 25.0%
! ACTAAGTTGTTTATCCAAAT+AGG - chr2_4:19992894-19992913 None:intergenic 25.0%
! TTAAGTGATTATAGCAAAGA+GGG + chr2_4:19992913-19992932 Msa0319900:intron 25.0%
!!! GAAGCACTTTTATTTTTTAC+AGG - chr2_4:19993050-19993069 None:intergenic 25.0%
! ATTATAGCATTACTGAAACT+CGG + chr2_4:19993410-19993429 Msa0319900:intron 25.0%
!! TAATATGAAGATTTTGCATC+AGG + chr2_4:19993443-19993462 Msa0319900:intron 25.0%
!!! AACATTGTTTTTGAAGAAAC+GGG + chr2_4:19993705-19993724 Msa0319900:CDS 25.0%
!! TAATAACTTTCCTTTTACCT+TGG + chr2_4:19993863-19993882 Msa0319900:intron 25.0%
! TCTCATTGACATAATAATCA+GGG + chr2_4:19993902-19993921 Msa0319900:intron 25.0%
! GAAATTCTTTGAATCTTTAG+GGG + chr2_4:19994383-19994402 Msa0319900:CDS 25.0%
!! TTCAATTGTCCACAAAATTT+TGG + chr2_4:19994639-19994658 Msa0319900:CDS 25.0%
!! ATTTAACCAACTCAGATTTT+GGG - chr2_4:19994830-19994849 None:intergenic 25.0%
!! AATTTAACCAACTCAGATTT+TGG - chr2_4:19994831-19994850 None:intergenic 25.0%
!!! GTTAAATTCCCTCAATTTTT+TGG + chr2_4:19994843-19994862 Msa0319900:CDS 25.0%
! AACTGTATCCAAAAAATTGA+GGG - chr2_4:19994854-19994873 None:intergenic 25.0%
! AAACTGTATCCAAAAAATTG+AGG - chr2_4:19994855-19994874 None:intergenic 25.0%
!!! AAAGAAAATGCAAGTTGATT+AGG + chr2_4:19994992-19995011 Msa0319900:CDS 25.0%
! TATTGAAAATTGAGACTTTC+AGG + chr2_4:19995049-19995068 Msa0319900:three_prime_UTR 25.0%
! TAATAAATAGCATCAAAACC+TGG - chr2_4:19995395-19995414 None:intergenic 25.0%
GTTTGTCCAAAAATTTGTGA+TGG + chr2_4:19991864-19991883 Msa0319900:intron 30.0%
TTAGGGACCAAAAATATTGA+TGG + chr2_4:19992039-19992058 Msa0319900:intron 30.0%
AAGAGAAAAATAGTGTGGAA+TGG - chr2_4:19992446-19992465 None:intergenic 30.0%
AGTGTAAGAGAAAAATAGTG+TGG - chr2_4:19992451-19992470 None:intergenic 30.0%
! TTTTCTCTTACACTTCCATA+AGG + chr2_4:19992457-19992476 Msa0319900:CDS 30.0%
GATACATGAAAATAGGAAAG+AGG - chr2_4:19992488-19992507 None:intergenic 30.0%
GGACATTGATACATGAAAAT+AGG - chr2_4:19992495-19992514 None:intergenic 30.0%
AGTTAGTTGTTTATCAGGAA+TGG + chr2_4:19992640-19992659 Msa0319900:intron 30.0%
TTGTTTATCAGGAATGGTAA+TGG + chr2_4:19992646-19992665 Msa0319900:intron 30.0%
CCGATTCTTAAATTTGGATT+AGG - chr2_4:19992689-19992708 None:intergenic 30.0%
GCATTTCCGATTCTTAAATT+TGG - chr2_4:19992695-19992714 None:intergenic 30.0%
GTTAAGTGATTATAGCAAAG+AGG + chr2_4:19992912-19992931 Msa0319900:intron 30.0%
TAAGTGATTATAGCAAAGAG+GGG + chr2_4:19992914-19992933 Msa0319900:intron 30.0%
! AGTATTTGAGTTCAAAACTC+TGG + chr2_4:19992982-19993001 Msa0319900:intron 30.0%
AACGTTAGTAATTAGCTGAT+AGG - chr2_4:19993025-19993044 None:intergenic 30.0%
!! AAATAAAAGTGCTTCTAGGA+TGG + chr2_4:19993055-19993074 Msa0319900:intron 30.0%
ATTCGTTTGAGCTTATCAAT+TGG - chr2_4:19993294-19993313 None:intergenic 30.0%
! TTCTTTTCTCAGGAAAAATC+CGG + chr2_4:19993493-19993512 Msa0319900:CDS 30.0%
AAACAATGTTAATACAGCCT+TGG - chr2_4:19993695-19993714 None:intergenic 30.0%
!!! ACATTGTTTTTGAAGAAACG+GGG + chr2_4:19993706-19993725 Msa0319900:CDS 30.0%
TTCACTCTAAACACAAAACT+TGG + chr2_4:19993800-19993819 Msa0319900:CDS 30.0%
GTCTCATTGACATAATAATC+AGG + chr2_4:19993901-19993920 Msa0319900:intron 30.0%
TTATCCTTAACAGTTGGATT+TGG - chr2_4:19994030-19994049 None:intergenic 30.0%
TCCAACTGTTAAGGATAAAT+CGG + chr2_4:19994032-19994051 Msa0319900:CDS 30.0%
GAATGAATATTGACCAGATT+AGG + chr2_4:19994187-19994206 Msa0319900:CDS 30.0%
!!! GTTGAGTTTTTTCTTGAACT+TGG + chr2_4:19994273-19994292 Msa0319900:CDS 30.0%
TTCTCATTATCCTCACTAAA+AGG + chr2_4:19994313-19994332 Msa0319900:CDS 30.0%
GATTCAAAGAATTTCATGGT+GGG - chr2_4:19994378-19994397 None:intergenic 30.0%
AGATTCAAAGAATTTCATGG+TGG - chr2_4:19994379-19994398 None:intergenic 30.0%
CACTGTAACTAACAATAGTT+GGG - chr2_4:19994551-19994570 None:intergenic 30.0%
ACACTGTAACTAACAATAGT+TGG - chr2_4:19994552-19994571 None:intergenic 30.0%
TATTGTTAGTTACAGTGTAG+AGG + chr2_4:19994554-19994573 Msa0319900:CDS 30.0%
! ATGCTAAGACCAAAATTTTG+TGG - chr2_4:19994651-19994670 None:intergenic 30.0%
!!! AAATTTTGGTCTTAGCATTG+AGG + chr2_4:19994653-19994672 Msa0319900:CDS 30.0%
TCCAAGAAAAATTGTGTTAC+GGG - chr2_4:19994690-19994709 None:intergenic 30.0%
CTCCAAGAAAAATTGTGTTA+CGG - chr2_4:19994691-19994710 None:intergenic 30.0%
GGGATTATGATTATGAGATA+TGG + chr2_4:19994735-19994754 Msa0319900:CDS 30.0%
GTCAAAAAGTAATCCCATTT+CGG - chr2_4:19994798-19994817 None:intergenic 30.0%
!!! AAGCATTGAAACTGTTTTTG+AGG + chr2_4:19995214-19995233 Msa0319900:three_prime_UTR 30.0%
!!! AGCATTGAAACTGTTTTTGA+GGG + chr2_4:19995215-19995234 Msa0319900:three_prime_UTR 30.0%
!!! GCTAAATTTTTAGCCAAGCT+TGG + chr2_4:19991312-19991331 Msa0319900:CDS 35.0%
CTTCTTATAGCAAGCAGTAT+AGG + chr2_4:19991394-19991413 Msa0319900:intron 35.0%
TGCAATAACAAACATAGCAG+CGG - chr2_4:19992343-19992362 None:intergenic 35.0%
TAGTGTGGAATGGAAATTGT+GGG - chr2_4:19992436-19992455 None:intergenic 35.0%
ATAGTGTGGAATGGAAATTG+TGG - chr2_4:19992437-19992456 None:intergenic 35.0%
!! CTATATTGGTTTCCTTAACC+AGG - chr2_4:19992743-19992762 None:intergenic 35.0%
! TAGCGATCCTTTGAGAATTA+CGG + chr2_4:19992868-19992887 Msa0319900:intron 35.0%
AAATAGGCCGTAATTCTCAA+AGG - chr2_4:19992878-19992897 None:intergenic 35.0%
TTTGAGAATTACGGCCTATT+TGG + chr2_4:19992877-19992896 Msa0319900:intron 35.0%
AAGTGATTATAGCAAAGAGG+GGG + chr2_4:19992915-19992934 Msa0319900:intron 35.0%
GGTTGCATGCTATTCATATA+AGG - chr2_4:19993331-19993350 None:intergenic 35.0%
! AGAGGAAGAAAAAGGCATAA+TGG - chr2_4:19993352-19993371 None:intergenic 35.0%
TTGAAGAGAGAGGAAGAAAA+AGG - chr2_4:19993360-19993379 None:intergenic 35.0%
TAAGAGAGATTTGAAGAGAG+AGG - chr2_4:19993370-19993389 None:intergenic 35.0%
CTTTGAACAAGATTGCATAC+CGG - chr2_4:19993515-19993534 None:intergenic 35.0%
TAGATGTTGCAATTGACATG+AGG + chr2_4:19993542-19993561 Msa0319900:intron 35.0%
ATAAGCATTAGACCTTCCAT+TGG + chr2_4:19993589-19993608 Msa0319900:intron 35.0%
! TTCCTTTTCTGCTGCTAATA+GGG - chr2_4:19993668-19993687 None:intergenic 35.0%
GAGAGAAGGTGATCAATAAA+AGG - chr2_4:19993775-19993794 None:intergenic 35.0%
! AGAAATTCTAGTGGATGTAG+TGG + chr2_4:19993996-19994015 Msa0319900:CDS 35.0%
CTATCCAAATCCAACTGTTA+AGG + chr2_4:19994023-19994042 Msa0319900:CDS 35.0%
TCCGATTTATCCTTAACAGT+TGG - chr2_4:19994036-19994055 None:intergenic 35.0%
TCCTCATATTGCTTATCTGA+TGG + chr2_4:19994158-19994177 Msa0319900:CDS 35.0%
TCCATCAGATAAGCAATATG+AGG - chr2_4:19994162-19994181 None:intergenic 35.0%
ATTGCTTATCTGATGGAACT+CGG + chr2_4:19994165-19994184 Msa0319900:CDS 35.0%
AACTATAGTAGGCAAAAGCT+GGG - chr2_4:19994230-19994249 None:intergenic 35.0%
AAACTATAGTAGGCAAAAGC+TGG - chr2_4:19994231-19994250 None:intergenic 35.0%
! AGCTTTTGCCTACTATAGTT+TGG + chr2_4:19994230-19994249 Msa0319900:CDS 35.0%
! TTTTGCCTACTATAGTTTGG+AGG + chr2_4:19994233-19994252 Msa0319900:CDS 35.0%
TTTGCCTACTATAGTTTGGA+GGG + chr2_4:19994234-19994253 Msa0319900:CDS 35.0%
TTTACCCTCCAAACTATAGT+AGG - chr2_4:19994241-19994260 None:intergenic 35.0%
TCAAGAAAAAACTCAACCAC+TGG - chr2_4:19994270-19994289 None:intergenic 35.0%
! ATAATTGAGGCCTTTTAGTG+AGG - chr2_4:19994326-19994345 None:intergenic 35.0%
ACTAAAAGGCCTCAATTATG+TGG + chr2_4:19994327-19994346 Msa0319900:CDS 35.0%
! AGACTGATTCCACATAATTG+AGG - chr2_4:19994339-19994358 None:intergenic 35.0%
GTGGACAATTGAATAGAAGA+AGG - chr2_4:19994632-19994651 None:intergenic 35.0%
! TTGTGTTACGGGCTTTATAT+TGG - chr2_4:19994679-19994698 None:intergenic 35.0%
! ACACAATTTTTCTTGGAGAG+AGG + chr2_4:19994693-19994712 Msa0319900:CDS 35.0%
GATACACTGTGGAAGAAATT+GGG + chr2_4:19994715-19994734 Msa0319900:CDS 35.0%
TGAGAATTTGATGCCGAAAT+GGG + chr2_4:19994782-19994801 Msa0319900:CDS 35.0%
!!! ATGGGATTACTTTTTGACCA+TGG + chr2_4:19994800-19994819 Msa0319900:CDS 35.0%
TTGCAGTTATACTGGAACAT+AGG + chr2_4:19995148-19995167 Msa0319900:three_prime_UTR 35.0%
!!! AAACTGTTTTTGAGGGACTT+TGG + chr2_4:19995222-19995241 Msa0319900:three_prime_UTR 35.0%
! AAGTGATTAGAGGATGCTTT+TGG + chr2_4:19995359-19995378 Msa0319900:three_prime_UTR 35.0%
TTGCAACTTTGTCACACTCT+TGG + chr2_4:19991273-19991292 Msa0319900:CDS 40.0%
TGCAACTTTGTCACACTCTT+GGG + chr2_4:19991274-19991293 Msa0319900:CDS 40.0%
! TTTTAGCCAAGCTTGGAACA+AGG + chr2_4:19991319-19991338 Msa0319900:CDS 40.0%
ATAGGTGTTAGTTATCCTCG+TGG + chr2_4:19991412-19991431 Msa0319900:intron 40.0%
AAAGAAAACTAATGGCCACG+AGG - chr2_4:19991430-19991449 None:intergenic 40.0%
GTCACAGCGACTAAAAAGTA+TGG - chr2_4:19992003-19992022 None:intergenic 40.0%
GTAAGAACAACGGCAGAAAT+TGG - chr2_4:19992281-19992300 None:intergenic 40.0%
GCAATAACAAACATAGCAGC+GGG - chr2_4:19992342-19992361 None:intergenic 40.0%
GAGTGGAATATCACTGCAAA+TGG - chr2_4:19992370-19992389 None:intergenic 40.0%
AGTGTGGAATGGAAATTGTG+GGG - chr2_4:19992435-19992454 None:intergenic 40.0%
AGGAAAGAGGTTGTACCTTA+TGG - chr2_4:19992475-19992494 None:intergenic 40.0%
AGTGATTATAGCAAAGAGGG+GGG + chr2_4:19992916-19992935 Msa0319900:intron 40.0%
GCACTTGTAAGACTGATTGA+GGG - chr2_4:19993266-19993285 None:intergenic 40.0%
AGCACTTGTAAGACTGATTG+AGG - chr2_4:19993267-19993286 None:intergenic 40.0%
TCAACTTCCTTCCTCTACAA+GGG + chr2_4:19993468-19993487 Msa0319900:CDS 40.0%
AGAAAAGAAGACCCTTGTAG+AGG - chr2_4:19993482-19993501 None:intergenic 40.0%
! TACAAGGGTCTTCTTTTCTC+AGG + chr2_4:19993483-19993502 Msa0319900:CDS 40.0%
! TTTTCTGCTGCTAATAGGGT+TGG - chr2_4:19993664-19993683 None:intergenic 40.0%
AACCCTATTAGCAGCAGAAA+AGG + chr2_4:19993663-19993682 Msa0319900:CDS 40.0%
! CTTCCTTTTCTGCTGCTAAT+AGG - chr2_4:19993669-19993688 None:intergenic 40.0%
!! TAGAGTGAAGCTTTGAGAGA+AGG - chr2_4:19993789-19993808 None:intergenic 40.0%
CACAAAACTTGGTACCTTTC+AGG + chr2_4:19993811-19993830 Msa0319900:CDS 40.0%
!! AACTTGGTACCTTTCAGGTT+TGG + chr2_4:19993816-19993835 Msa0319900:intron 40.0%
TAGTAGCAACCAAACCTGAA+AGG - chr2_4:19993828-19993847 None:intergenic 40.0%
TTAGCAGGATCCAAGGTAAA+AGG - chr2_4:19993876-19993895 None:intergenic 40.0%
TCAATGAGACTGTGATTAGC+AGG - chr2_4:19993891-19993910 None:intergenic 40.0%
AGCTTACAACTCTTGAGATC+AGG + chr2_4:19993929-19993948 Msa0319900:CDS 40.0%
GCTTACAACTCTTGAGATCA+GGG + chr2_4:19993930-19993949 Msa0319900:CDS 40.0%
GAATCACTTTACGAAGAGCA+TGG + chr2_4:19993973-19993992 Msa0319900:CDS 40.0%
AGAGCATGGAGAAATTCTAG+TGG + chr2_4:19993987-19994006 Msa0319900:CDS 40.0%
GTCGCATAATAGTCCTAATC+TGG - chr2_4:19994203-19994222 None:intergenic 40.0%
! TGAATCTTTAGGGGTTGACA+AGG + chr2_4:19994392-19994411 Msa0319900:CDS 40.0%
! GTAGATTTTCTCCGCGAATT+TGG + chr2_4:19994486-19994505 Msa0319900:CDS 40.0%
CAATGTACTTCCGTTCTCTA+GGG + chr2_4:19994595-19994614 Msa0319900:CDS 40.0%
AATGTACTTCCGTTCTCTAG+GGG + chr2_4:19994596-19994615 Msa0319900:CDS 40.0%
! GCCCGTAACACAATTTTTCT+TGG + chr2_4:19994686-19994705 Msa0319900:CDS 40.0%
GGATACACTGTGGAAGAAAT+TGG + chr2_4:19994714-19994733 Msa0319900:CDS 40.0%
CTGAGAATTTGATGCCGAAA+TGG + chr2_4:19994781-19994800 Msa0319900:CDS 40.0%
!! CTCAGATTTTGGGTAATCCA+TGG - chr2_4:19994820-19994839 None:intergenic 40.0%
GGATTACCCAAAATCTGAGT+TGG + chr2_4:19994821-19994840 Msa0319900:CDS 40.0%
! TTTTTCACGCGTGCATATCT+CGG - chr2_4:19994894-19994913 None:intergenic 40.0%
TATGCACGCGTGAAAAATTC+TGG + chr2_4:19994897-19994916 Msa0319900:CDS 40.0%
ATGCACGCGTGAAAAATTCT+GGG + chr2_4:19994898-19994917 Msa0319900:CDS 40.0%
GGTGAGATTACTGTTGAATC+AGG + chr2_4:19994920-19994939 Msa0319900:CDS 40.0%
! GGATTCTTTTTACAGCAGCA+TGG + chr2_4:19995013-19995032 Msa0319900:exon 40.0%
GCGAAAAGTTGCAGTTATAC+TGG + chr2_4:19995140-19995159 Msa0319900:three_prime_UTR 40.0%
CATAGGTCGAACGATAACTT+CGG + chr2_4:19995165-19995184 Msa0319900:three_prime_UTR 40.0%
ATAGGTCGAACGATAACTTC+GGG + chr2_4:19995166-19995185 Msa0319900:three_prime_UTR 40.0%
GCAACTTTGTCACACTCTTG+GGG + chr2_4:19991275-19991294 Msa0319900:CDS 45.0%
AATAGTCATGAGATCACCCG+TGG - chr2_4:19991346-19991365 None:intergenic 45.0%
!!! TTTGACGGTGGTTTTGACGA+CGG - chr2_4:19992257-19992276 None:intergenic 45.0%
!! ACGGCAGAAATTGGCTTTGA+CGG - chr2_4:19992272-19992291 None:intergenic 45.0%
ATTGTGGGGTGGTTGAATTG+AGG - chr2_4:19992421-19992440 None:intergenic 45.0%
AATGCTAACTAGTGTCCCAG+TGG + chr2_4:19992710-19992729 Msa0319900:intron 45.0%
GTGATTATAGCAAAGAGGGG+GGG + chr2_4:19992917-19992936 Msa0319900:intron 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG + chr2_4:19992945-19992964 Msa0319900:intron 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG + chr2_4:19992946-19992965 Msa0319900:intron 45.0%
CTCAACTTCCTTCCTCTACA+AGG + chr2_4:19993467-19993486 Msa0319900:CDS 45.0%
AAGAAGACCCTTGTAGAGGA+AGG - chr2_4:19993478-19993497 None:intergenic 45.0%
AGCAGAAAAGGAAGAAGCCA+AGG + chr2_4:19993675-19993694 Msa0319900:CDS 45.0%
ACTGTGATTAGCAGGATCCA+AGG - chr2_4:19993883-19993902 None:intergenic 45.0%
ACTTTCTTAGAGTCTACCGC+TGG - chr2_4:19994087-19994106 None:intergenic 45.0%
TATACCACTCACTCGAGACA+CGG - chr2_4:19994115-19994134 None:intergenic 45.0%
GGAGGGTAAAATTAAGCCAG+TGG + chr2_4:19994251-19994270 Msa0319900:CDS 45.0%
TAGGGGTTGACAAGGAACAA+TGG + chr2_4:19994400-19994419 Msa0319900:CDS 45.0%
AGGGGTTGACAAGGAACAAT+GGG + chr2_4:19994401-19994420 Msa0319900:CDS 45.0%
TGCTATAAGTTAGCAGGGCT+GGG - chr2_4:19994446-19994465 None:intergenic 45.0%
CTGCGTGCTATAAGTTAGCA+GGG - chr2_4:19994451-19994470 None:intergenic 45.0%
TCTGCGTGCTATAAGTTAGC+AGG - chr2_4:19994452-19994471 None:intergenic 45.0%
!! CTTCTGAGACACCAAATTCG+CGG - chr2_4:19994500-19994519 None:intergenic 45.0%
GGTGTCTCAGAAGAGAACAT+AGG + chr2_4:19994507-19994526 Msa0319900:CDS 45.0%
! GAACGGAAGTACATTGCTGT+CGG - chr2_4:19994591-19994610 None:intergenic 45.0%
GCAATGTACTTCCGTTCTCT+AGG + chr2_4:19994594-19994613 Msa0319900:CDS 45.0%
CAACATCAACCCCTAGAGAA+CGG - chr2_4:19994608-19994627 None:intergenic 45.0%
TGCACGCGTGAAAAATTCTG+GGG + chr2_4:19994899-19994918 Msa0319900:CDS 45.0%
GAGACTTTCAGGCATGTTTC+AGG + chr2_4:19995060-19995079 Msa0319900:three_prime_UTR 45.0%
! GCATGTTTCAGGTCAGAAGA+TGG + chr2_4:19995071-19995090 Msa0319900:three_prime_UTR 45.0%
!! GCTTTTGGTAACATGACACC+AGG + chr2_4:19995374-19995393 Msa0319900:three_prime_UTR 45.0%
CAAGCTTGGAACAAGGTCCA+CGG + chr2_4:19991326-19991345 Msa0319900:CDS 50.0%
AAGCTTGGAACAAGGTCCAC+GGG + chr2_4:19991327-19991346 Msa0319900:CDS 50.0%
GAAGCAAAGCGAACTGCAGT+TGG - chr2_4:19991378-19991397 None:intergenic 50.0%
!! GCAGAAATTGGCTTTGACGG+TGG - chr2_4:19992269-19992288 None:intergenic 50.0%
!! GGGTGGGTTGGTAAGAACAA+CGG - chr2_4:19992291-19992310 None:intergenic 50.0%
GTGGAATGGAAATTGTGGGG+TGG - chr2_4:19992432-19992451 None:intergenic 50.0%
ATTATAGCAAAGAGGGGGGG+TGG + chr2_4:19992920-19992939 Msa0319900:intron 50.0%
TTATAGCAAAGAGGGGGGGT+GGG + chr2_4:19992921-19992940 Msa0319900:intron 50.0%
! GAGTACAAGGCACCAATGGA+AGG - chr2_4:19993604-19993623 None:intergenic 50.0%
! GTCTGAGTACAAGGCACCAA+TGG - chr2_4:19993608-19993627 None:intergenic 50.0%
CTCGTCTGTGTCTGAGTACA+AGG - chr2_4:19993617-19993636 None:intergenic 50.0%
TCTGCTGCTAATAGGGTTGG+AGG - chr2_4:19993661-19993680 None:intergenic 50.0%
CTAGGACTAGGAGGTGGAAT+TGG - chr2_4:19994063-19994082 None:intergenic 50.0%
TTAGAGTCTACCGCTGGACT+AGG - chr2_4:19994081-19994100 None:intergenic 50.0%
AGTGGTATAGACCCTGCTGA+GGG + chr2_4:19994126-19994145 Msa0319900:CDS 50.0%
GACGAAGATTTCCCTCAGCA+GGG - chr2_4:19994140-19994159 None:intergenic 50.0%
AAGTTAGCAGGGCTGGGAAA+CGG - chr2_4:19994440-19994459 None:intergenic 50.0%
GTGCTATAAGTTAGCAGGGC+TGG - chr2_4:19994447-19994466 None:intergenic 50.0%
!! CGTTCTCTAGGGGTTGATGT+TGG + chr2_4:19994606-19994625 Msa0319900:CDS 50.0%
CTTGGAGAGAGGATACACTG+TGG + chr2_4:19994704-19994723 Msa0319900:CDS 50.0%
CGTGGACCTTGTTCCAAGCT+TGG - chr2_4:19991328-19991347 None:intergenic 55.0%
GCAAAGCGAACTGCAGTTGG+AGG - chr2_4:19991375-19991394 None:intergenic 55.0%
TCACCTATAGCCACAGCCAC+CGG + chr2_4:19992222-19992241 Msa0319900:intron 55.0%
TTGACGACGGAGGAAGGTTC+CGG - chr2_4:19992244-19992263 None:intergenic 55.0%
!!! GTGGTTTTGACGACGGAGGA+AGG - chr2_4:19992250-19992269 None:intergenic 55.0%
AACTAGTGTCCCAGTGGCAC+TGG + chr2_4:19992716-19992735 Msa0319900:intron 55.0%
! TAACCAGGACCAGTGCCACT+GGG - chr2_4:19992728-19992747 None:intergenic 55.0%
TTAACCAGGACCAGTGCCAC+TGG - chr2_4:19992729-19992748 None:intergenic 55.0%
!! AGTGGCACTGGTCCTGGTTA+AGG + chr2_4:19992728-19992747 Msa0319900:intron 55.0%
ACCTCCTAGTCCTAGTCCAG+CGG + chr2_4:19994068-19994087 Msa0319900:CDS 55.0%
! TCTACCGCTGGACTAGGACT+AGG - chr2_4:19994075-19994094 None:intergenic 55.0%
AAAGCCGTGTCTCGAGTGAG+TGG + chr2_4:19994108-19994127 Msa0319900:CDS 55.0%
GAGTGGTATAGACCCTGCTG+AGG + chr2_4:19994125-19994144 Msa0319900:CDS 55.0%
GGACGAAGATTTCCCTCAGC+AGG - chr2_4:19994141-19994160 None:intergenic 55.0%
GTTCCGGTGGCTGTGGCTAT+AGG - chr2_4:19992228-19992247 None:intergenic 60.0%
!!! GACGGTGGTTTTGACGACGG+AGG - chr2_4:19992254-19992273 None:intergenic 60.0%
!! TGGTGAGTTGGGTGGTGGGT+GGG - chr2_4:19992307-19992326 None:intergenic 60.0%
! CTGGTGGTGAGTTGGGTGGT+GGG - chr2_4:19992311-19992330 None:intergenic 60.0%
! GCTGCTGCTGGTGGTGAGTT+GGG - chr2_4:19992318-19992337 None:intergenic 60.0%
! TGCTGCTGCTGGTGGTGAGT+TGG - chr2_4:19992319-19992338 None:intergenic 60.0%
! GCTGGACTAGGACTAGGAGG+TGG - chr2_4:19994069-19994088 None:intergenic 60.0%
! ACCGCTGGACTAGGACTAGG+AGG - chr2_4:19994072-19994091 None:intergenic 60.0%
GAGGAAGGTTCCGGTGGCTG+TGG - chr2_4:19992235-19992254 None:intergenic 65.0%
ACGACGGAGGAAGGTTCCGG+TGG - chr2_4:19992241-19992260 None:intergenic 65.0%
!! GAGTTGGGTGGTGGGTGGGT+TGG - chr2_4:19992303-19992322 None:intergenic 65.0%
!! GTGGTGAGTTGGGTGGTGGG+TGG - chr2_4:19992308-19992327 None:intergenic 65.0%
! GCTGGTGGTGAGTTGGGTGG+TGG - chr2_4:19992312-19992331 None:intergenic 65.0%
! GCTGCTGGTGGTGAGTTGGG+TGG - chr2_4:19992315-19992334 None:intergenic 65.0%
!! ATAGCAGCGGGTGCTGCTGC+TGG - chr2_4:19992330-19992349 None:intergenic 65.0%
!! TGTCCCAGTGGCACTGGTCC+TGG + chr2_4:19992722-19992741 Msa0319900:intron 65.0%
GGGGGGGTGGGTAGCTCAAC+TGG + chr2_4:19992933-19992952 Msa0319900:intron 70.0%
!! GCAGCGGGTGCTGCTGCTGG+TGG - chr2_4:19992327-19992346 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19991255 19995434 19991255 ID=Msa0319900;Name=Msa0319900
chr2_4 mRNA 19991255 19995434 19991255 ID=Msa0319900-mRNA-1;Parent=Msa0319900;Name=Msa0319900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.8|0.75|0.6|5|421|560
chr2_4 exon 19991255 19991348 19991255 ID=Msa0319900-mRNA-1:exon:7398;Parent=Msa0319900-mRNA-1
chr2_4 exon 19992238 19992478 19992238 ID=Msa0319900-mRNA-1:exon:7399;Parent=Msa0319900-mRNA-1
chr2_4 exon 19993465 19993514 19993465 ID=Msa0319900-mRNA-1:exon:7400;Parent=Msa0319900-mRNA-1
chr2_4 exon 19993626 19993832 19993626 ID=Msa0319900-mRNA-1:exon:7401;Parent=Msa0319900-mRNA-1
chr2_4 exon 19993923 19995434 19993923 ID=Msa0319900-mRNA-1:exon:7402;Parent=Msa0319900-mRNA-1
chr2_4 CDS 19991255 19991348 19991255 ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4 CDS 19992238 19992478 19992238 ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4 CDS 19993465 19993514 19993465 ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4 CDS 19993626 19993832 19993626 ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4 CDS 19993923 19995013 19993923 ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4 three_prime_UTR 19995014 19995434 19995014 ID=Msa0319900-mRNA-1:three_prime_utr;Parent=Msa0319900-mRNA-1
Gene Sequence

>Msa0319900

ATGGATAAAGATTGGGCTTTGCAACTTTGTCACACTCTTGGGGAAGACAATATGTGTGCTAAATTTTTAGCCAAGCTTGGAACAAGGTCCACGGCCACCGGAACCTTCCTCCGTCGTCAAAACCACCGTCAAAGCCAATTTCTGCCGTTGTTCTTACCAACCCACCCACCACCCAACTCACCACCAGCAGCAGCACCCGCTGCTATGTTTGTTATTGCATCTTCCATTTGCAGTGATATTCCACTCTTAAAACCAATAAAGATGAAAACTTTCTCCTCAATTCAACCACCCCACAATTTCCATTCCACACTATTTTTCTCTTACACTTCCATAAGGACTCAACTTCCTTCCTCTACAAGGGTCTTCTTTTCTCAGGAAAAATCCGACACAGACGAGTCATTAAACGTAAAACTGTTGCCTCCAACCCTATTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACATTGTTTTTGAAGAAACGGGGTTTGAGCAATGCAAATGCAGCAAGAACGATTAACAAGTCAGATCCTTTTATTGATCACCTTCTCTCAAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTCTTATCTCTTATCTCGAATCACTTTACGAAGAGCATGGAGAAATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCAACTGTTAAGGATAAATCGGACGCACCAATTCCACCTCCTAGTCCTAGTCCAGCGGTAGACTCTAAGAAAGTTAAAGCCGTGTCTCGAGTGAGTGGTATAGACCCTGCTGAGGGAAATCTTCGTCCTCATATTGCTTATCTGATGGAACTCGGAATGAATATTGACCAGATTAGGACTATTATGCGACGATTCCCAGCTTTTGCCTACTATAGTTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTACCAAAAGAAAAAATTCTCATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTAAAAATCTTAAGCCCACCATGAAATTCTTTGAATCTTTAGGGGTTGACAAGGAACAATGGGCGAAAGTGATCTACCGTTTCCCAGCCCTGCTAACTTATAGCACGCAGAAGATTAATGAAAGTGTAGATTTTCTCCGCGAATTTGGTGTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCAACTATTGTTAGTTACAGTGTAGAGGACAATCTTCGACCGACAGCAATGTACTTCCGTTCTCTAGGGGTTGATGTTGGCCTTCTTCTATTCAATTGTCCACAAAATTTTGGTCTTAGCATTGAGGCCAATATAAAGCCCGTAACACAATTTTTCTTGGAGAGAGGATACACTGTGGAAGAAATTGGGATTATGATTATGAGATATGGAATGTTGTACACATTCAGCTTGACTGAGAATTTGATGCCGAAATGGGATTACTTTTTGACCATGGATTACCCAAAATCTGAGTTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAGCAAAGAATTAAACCGAGATATGCACGCGTGAAAAATTCTGGGGTGAGATTACTGTTGAATCAGGTACTTTCACTGTCAAGCAGCAACTTTGACGAGATCTTAAGAAAGAAAATAAAGAAAATGCAAGTTGATTAG
Protein sequence

>Msa0319900

MDKDWALQLCHTLGEDNMCAKFLAKLGTRSTATGTFLRRQNHRQSQFLPLFLPTHPPPNSPPAAAPAAMFVIASSICSDIPLLKPIKMKTFSSIQPPHNFHSTLFFSYTSIRTQLPSSTRVFFSQEKSDTDESLNVKLLPPTLLAAEKEEAKAVLTLFLKKRGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLYEEHGEILVDVVENYPNPTVKDKSDAPIPPPSPSPAVDSKKVKAVSRVSGIDPAEGNLRPHIAYLMELGMNIDQIRTIMRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKILIILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESVDFLREFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTVEEIGIMIMRYGMLYTFSLTENLMPKWDYFLTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKNSGVRLLLNQVLSLSSSNFDEILRKKIKKMQVD*