AlfalfaGEDB | Msa0319900

M. sativa cultivar zhongmu-4 / Msa0319900

KEGG: K15032
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0033993 GO:0034622 GO:0034641 GO:0042221 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0319900	AES65036.2	95.882	510	18	1	54	560	48	557	0.0	999

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0319900	sp\|F4JVI3\|MTEF5_ARATH	63.616	448	152	4	110	547	22	468	0.0	558

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0319900	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0319900	MtrunA17_Chr2g0294671	95.968	496	16	1	69	560	1	496	0.0	971
Msa0319900	MtrunA17_Chr6g0448821	30.078	256	174	3	295	546	102	356	7.15e-31	124
Msa0319900	MtrunA17_Chr5g0417641	35.096	208	129	5	345	547	87	293	2.71e-29	117
Msa0319900	MtrunA17_Chr5g0428941	29.455	275	184	6	281	548	213	484	3.99e-29	121
Msa0319900	MtrunA17_Chr5g0428941	23.404	282	167	7	275	552	139	375	3.14e-13	72.4
Msa0319900	MtrunA17_Chr1g0212691	29.474	285	189	6	275	551	175	455	1.97e-28	119
Msa0319900	MtrunA17_Chr1g0212691	23.485	264	176	5	253	494	67	326	1.46e-13	73.2
Msa0319900	MtrunA17_Chr4g0034981	24.913	289	208	7	275	556	309	595	1.96e-26	114
Msa0319900	MtrunA17_Chr4g0034981	25.292	257	177	6	308	554	271	522	4.59e-20	94.0
Msa0319900	MtrunA17_Chr4g0034981	29.949	197	135	3	272	466	378	573	8.43e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0319900	AT4G14605.2	63.616	448	152	4	110	547	22	468	0.0	558
Msa0319900	AT4G14605.1	63.616	448	152	4	110	547	22	468	0.0	558
Msa0319900	AT2G21710.1	28.912	294	194	7	275	558	316	604	9.31e-33	133
Msa0319900	AT2G21710.1	30.366	191	130	3	272	460	385	574	2.86e-13	73.2
Msa0319900	AT2G21710.1	28.114	281	182	7	141	420	306	567	3.32e-13	72.8
Msa0319900	AT2G44020.1	27.726	321	186	6	274	551	143	460	2.40e-29	122
Msa0319900	AT4G38160.4	27.372	274	186	5	285	548	52	322	5.87e-27	112
Msa0319900	AT4G38160.4	30.719	153	103	3	271	420	110	262	4.80e-14	73.9
Msa0319900	AT4G38160.1	27.372	274	186	5	285	548	52	322	5.87e-27	112
Msa0319900	AT4G38160.1	30.719	153	103	3	271	420	110	262	4.80e-14	73.9

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Find 129 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGTTAATACAGCCT+TGG	0.497710	2_4:-19993692	None:intergenic
AAACTATAGTAGGCAAAAGC+TGG	0.426748	2_4:-19994228	None:intergenic
AAAGAAAATGCAAGTTGATT+AGG	0.286687	2_4:+19994992	Msa0319900:CDS
AAAGCCGTGTCTCGAGTGAG+TGG	0.646198	2_4:+19994108	Msa0319900:CDS
AAAGTACATGGATAAAGATT+GGG	0.459936	2_4:+19991248	None:intergenic
AACCCTATTAGCAGCAGAAA+AGG	0.445757	2_4:+19993663	Msa0319900:CDS
AACTATAGTAGGCAAAAGCT+GGG	0.542556	2_4:-19994227	None:intergenic
AAGAAGACCCTTGTAGAGGA+AGG	0.547271	2_4:-19993475	None:intergenic
AAGCTTGGAACAAGGTCCAC+GGG	0.602981	2_4:+19991327	Msa0319900:CDS
AAGTGATTAGAGGATGCTTT+TGG	0.393419	2_4:+19995359	Msa0319900:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGTCCAAAAATTTGTGA+TGG	+	chr2_4:19991864-19991883	Msa0319900:intron	30.0%
TTAGGGACCAAAAATATTGA+TGG	+	chr2_4:19992039-19992058	Msa0319900:intron	30.0%
AAGAGAAAAATAGTGTGGAA+TGG	-	chr2_4:19992446-19992465	None:intergenic	30.0%
AGTGTAAGAGAAAAATAGTG+TGG	-	chr2_4:19992451-19992470	None:intergenic	30.0%
GATACATGAAAATAGGAAAG+AGG	-	chr2_4:19992488-19992507	None:intergenic	30.0%
GGACATTGATACATGAAAAT+AGG	-	chr2_4:19992495-19992514	None:intergenic	30.0%
AGTTAGTTGTTTATCAGGAA+TGG	+	chr2_4:19992640-19992659	Msa0319900:intron	30.0%
TTGTTTATCAGGAATGGTAA+TGG	+	chr2_4:19992646-19992665	Msa0319900:intron	30.0%
CCGATTCTTAAATTTGGATT+AGG	-	chr2_4:19992689-19992708	None:intergenic	30.0%
GCATTTCCGATTCTTAAATT+TGG	-	chr2_4:19992695-19992714	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	19991255	19995434	19991255	ID=Msa0319900;Name=Msa0319900
chr2_4	mRNA	19991255	19995434	19991255	ID=Msa0319900-mRNA-1;Parent=Msa0319900;Name=Msa0319900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.5\|0.4\|0.8\|0.75\|0.6\|5\|421\|560
chr2_4	exon	19991255	19991348	19991255	ID=Msa0319900-mRNA-1:exon:7398;Parent=Msa0319900-mRNA-1
chr2_4	exon	19992238	19992478	19992238	ID=Msa0319900-mRNA-1:exon:7399;Parent=Msa0319900-mRNA-1
chr2_4	exon	19993465	19993514	19993465	ID=Msa0319900-mRNA-1:exon:7400;Parent=Msa0319900-mRNA-1
chr2_4	exon	19993626	19993832	19993626	ID=Msa0319900-mRNA-1:exon:7401;Parent=Msa0319900-mRNA-1
chr2_4	exon	19993923	19995434	19993923	ID=Msa0319900-mRNA-1:exon:7402;Parent=Msa0319900-mRNA-1
chr2_4	CDS	19991255	19991348	19991255	ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4	CDS	19992238	19992478	19992238	ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4	CDS	19993465	19993514	19993465	ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4	CDS	19993626	19993832	19993626	ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4	CDS	19993923	19995013	19993923	ID=Msa0319900-mRNA-1:cds;Parent=Msa0319900-mRNA-1
chr2_4	three_prime_UTR	19995014	19995434	19995014	ID=Msa0319900-mRNA-1:three_prime_utr;Parent=Msa0319900-mRNA-1

Gene Sequence

>Msa0319900

ATGGATAAAGATTGGGCTTTGCAACTTTGTCACACTCTTGGGGAAGACAATATGTGTGCTAAATTTTTAGCCAAGCTTGGAACAAGGTCCACGGCCACCGGAACCTTCCTCCGTCGTCAAAACCACCGTCAAAGCCAATTTCTGCCGTTGTTCTTACCAACCCACCCACCACCCAACTCACCACCAGCAGCAGCACCCGCTGCTATGTTTGTTATTGCATCTTCCATTTGCAGTGATATTCCACTCTTAAAACCAATAAAGATGAAAACTTTCTCCTCAATTCAACCACCCCACAATTTCCATTCCACACTATTTTTCTCTTACACTTCCATAAGGACTCAACTTCCTTCCTCTACAAGGGTCTTCTTTTCTCAGGAAAAATCCGACACAGACGAGTCATTAAACGTAAAACTGTTGCCTCCAACCCTATTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACATTGTTTTTGAAGAAACGGGGTTTGAGCAATGCAAATGCAGCAAGAACGATTAACAAGTCAGATCCTTTTATTGATCACCTTCTCTCAAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTCTTATCTCTTATCTCGAATCACTTTACGAAGAGCATGGAGAAATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCAACTGTTAAGGATAAATCGGACGCACCAATTCCACCTCCTAGTCCTAGTCCAGCGGTAGACTCTAAGAAAGTTAAAGCCGTGTCTCGAGTGAGTGGTATAGACCCTGCTGAGGGAAATCTTCGTCCTCATATTGCTTATCTGATGGAACTCGGAATGAATATTGACCAGATTAGGACTATTATGCGACGATTCCCAGCTTTTGCCTACTATAGTTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTACCAAAAGAAAAAATTCTCATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTAAAAATCTTAAGCCCACCATGAAATTCTTTGAATCTTTAGGGGTTGACAAGGAACAATGGGCGAAAGTGATCTACCGTTTCCCAGCCCTGCTAACTTATAGCACGCAGAAGATTAATGAAAGTGTAGATTTTCTCCGCGAATTTGGTGTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCAACTATTGTTAGTTACAGTGTAGAGGACAATCTTCGACCGACAGCAATGTACTTCCGTTCTCTAGGGGTTGATGTTGGCCTTCTTCTATTCAATTGTCCACAAAATTTTGGTCTTAGCATTGAGGCCAATATAAAGCCCGTAACACAATTTTTCTTGGAGAGAGGATACACTGTGGAAGAAATTGGGATTATGATTATGAGATATGGAATGTTGTACACATTCAGCTTGACTGAGAATTTGATGCCGAAATGGGATTACTTTTTGACCATGGATTACCCAAAATCTGAGTTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAGCAAAGAATTAAACCGAGATATGCACGCGTGAAAAATTCTGGGGTGAGATTACTGTTGAATCAGGTACTTTCACTGTCAAGCAGCAACTTTGACGAGATCTTAAGAAAGAAAATAAAGAAAATGCAAGTTGATTAG

Protein sequence

>Msa0319900

MDKDWALQLCHTLGEDNMCAKFLAKLGTRSTATGTFLRRQNHRQSQFLPLFLPTHPPPNSPPAAAPAAMFVIASSICSDIPLLKPIKMKTFSSIQPPHNFHSTLFFSYTSIRTQLPSSTRVFFSQEKSDTDESLNVKLLPPTLLAAEKEEAKAVLTLFLKKRGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLYEEHGEILVDVVENYPNPTVKDKSDAPIPPPSPSPAVDSKKVKAVSRVSGIDPAEGNLRPHIAYLMELGMNIDQIRTIMRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKILIILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESVDFLREFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTVEEIGIMIMRYGMLYTFSLTENLMPKWDYFLTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKNSGVRLLLNQVLSLSSSNFDEILRKKIKKMQVD*