AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0320010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320010 MtrunA17_Chr2g0294841 98.556 762 10 1 1 762 1 761 0.0 1577
Msa0320010 MtrunA17_Chr2g0276841 58.496 665 255 6 22 676 42 695 0.0 811
Msa0320010 MtrunA17_Chr1g0198761 41.356 752 413 10 2 746 3 733 0.0 585
Msa0320010 MtrunA17_Chr2g0290391 39.724 652 371 5 21 662 27 666 4.98e-165 493
Msa0320010 MtrunA17_Chr5g0431001 49.769 432 209 3 44 470 60 488 2.08e-145 436
Msa0320010 MtrunA17_Chr5g0448761 28.750 640 435 12 42 667 57 689 5.16e-80 272
Msa0320010 MtrunA17_Chr1g0202341 27.638 597 407 11 14 604 27 604 2.94e-67 235
Msa0320010 MtrunA17_Chr2g0329031 28.374 578 365 13 51 612 20 564 2.95e-65 231
Msa0320010 MtrunA17_Chr3g0080351 27.888 606 381 13 14 604 54 618 5.86e-64 229
Msa0320010 MtrunA17_Chr8g0363841 25.797 659 416 13 46 663 18 644 4.18e-61 218
Msa0320010 MtrunA17_Chr3g0082121 28.179 582 391 11 38 614 36 595 9.30e-61 218
Msa0320010 MtrunA17_Chr2g0287651 27.465 568 377 12 51 604 81 627 1.61e-58 214
Msa0320010 MtrunA17_Chr5g0441581 26.678 611 402 15 9 605 1 579 3.15e-58 210
Msa0320010 MtrunA17_Chr1g0207551 27.087 587 407 10 24 604 13 584 5.37e-58 211
Msa0320010 MtrunA17_Chr6g0458391 28.055 581 366 17 38 604 218 760 1.29e-54 201
Msa0320010 MtrunA17_Chr6g0458391 32.331 133 81 3 33 165 79 202 4.30e-12 69.7
Msa0320010 MtrunA17_Chr5g0440451 26.199 584 380 11 45 604 43 599 3.28e-54 202
Msa0320010 MtrunA17_Chr3g0118611 29.880 415 248 9 219 611 110 503 3.70e-52 194
Msa0320010 MtrunA17_Chr2g0287061 26.178 573 365 11 38 604 176 696 4.68e-51 191
Msa0320010 MtrunA17_Chr2g0324011 25.376 599 416 12 39 624 4 584 4.76e-51 188
Msa0320010 MtrunA17_Chr2g0296781 25.812 585 369 15 51 605 3 552 1.37e-50 189
Msa0320010 MtrunA17_Chr5g0448511 29.491 373 258 4 236 604 21 392 3.67e-50 184
Msa0320010 MtrunA17_Chr1g0203721 25.945 582 391 13 41 604 59 618 3.48e-49 186
Msa0320010 MtrunA17_Chr1g0203051 24.673 612 401 18 10 596 45 621 1.30e-48 182
Msa0320010 MtrunA17_Chr6g0477261 27.540 443 307 9 174 605 2 441 4.97e-47 177
Msa0320010 MtrunA17_Chr1g0196541 23.445 627 418 15 51 660 3 584 2.81e-42 164
Msa0320010 MtrunA17_Chr2g0291581 23.826 575 394 10 45 604 71 616 1.97e-38 152
Msa0320010 MtrunA17_Chr2g0291591 25.832 511 327 14 36 527 55 532 1.26e-34 139
Msa0320010 MtrunA17_Chr1g0164591 27.628 333 200 5 130 446 1 308 6.93e-33 129
Msa0320010 MtrunA17_Chr3g0081281 54.839 93 42 0 191 283 1 93 7.41e-30 113
Msa0320010 MtrunA17_Chr7g0258861 27.458 295 200 7 39 329 4 288 2.39e-22 98.6
Msa0320010 MtrunA17_Chr1g0171741 32.203 177 98 8 11 173 86 254 9.90e-13 69.3
Msa0320010 MtrunA17_Chr7g0233911 36.364 110 63 3 45 154 34 136 6.59e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0320010 AT1G10240.2 57.943 661 272 4 18 678 21 675 0.0 814
Msa0320010 AT1G10240.1 57.943 661 272 4 18 678 21 675 0.0 814
Msa0320010 AT5G28530.3 40.276 653 354 10 26 663 39 670 2.12e-161 483
Msa0320010 AT5G28530.2 40.276 653 354 10 26 663 39 670 2.12e-161 483
Msa0320010 AT5G28530.1 39.816 653 361 9 26 663 39 674 2.39e-161 483
Msa0320010 AT5G28530.4 36.547 643 333 11 26 663 39 611 1.52e-127 394
Msa0320010 AT5G28530.5 37.014 643 326 12 26 663 39 607 1.54e-127 394
Msa0320010 AT4G38180.1 30.556 576 387 8 41 611 69 636 2.33e-82 279
Msa0320010 AT4G15090.1 26.439 643 448 12 19 651 25 652 3.46e-62 224
Msa0320010 AT4G15090.5 26.439 643 448 12 19 651 25 652 3.46e-62 224
Msa0320010 AT4G15090.3 26.439 643 448 12 19 651 25 652 3.46e-62 224
Msa0320010 AT4G15090.2 26.439 643 448 12 19 651 25 652 3.46e-62 224
Msa0320010 AT4G15090.4 26.439 643 448 12 19 651 25 652 3.46e-62 224
Msa0320010 AT3G22170.2 25.039 639 413 16 22 629 33 636 2.59e-60 219
Msa0320010 AT3G22170.1 25.039 639 413 16 22 629 33 636 2.59e-60 219
Msa0320010 AT1G76320.3 27.257 565 372 11 51 604 3 539 8.19e-56 203
Msa0320010 AT1G76320.2 27.257 565 372 11 51 604 3 539 1.67e-55 203
Msa0320010 AT1G76320.1 27.257 565 372 11 51 604 3 539 1.74e-55 203
Msa0320010 AT1G76320.4 27.257 565 372 11 51 604 3 539 1.74e-55 203
Msa0320010 AT2G27110.2 26.853 607 370 18 11 604 29 574 2.51e-52 196
Msa0320010 AT2G27110.1 26.853 607 370 18 11 604 29 574 2.51e-52 196
Msa0320010 AT4G19990.5 25.610 574 367 11 48 604 24 554 1.44e-47 181
Msa0320010 AT4G19990.3 25.610 574 367 11 48 604 24 554 1.51e-47 181
Msa0320010 AT4G19990.4 25.610 574 367 11 48 604 24 554 1.51e-47 181
Msa0320010 AT4G19990.7 25.610 574 367 11 48 604 38 568 1.64e-47 181
Msa0320010 AT2G27110.3 30.208 384 257 8 227 604 51 429 2.09e-47 180
Msa0320010 AT4G19990.6 25.610 574 367 11 48 604 24 554 3.24e-47 180
Msa0320010 AT4G19990.2 25.610 574 367 11 48 604 24 554 3.24e-47 180
Msa0320010 AT1G52520.1 26.142 635 399 19 45 649 85 679 1.88e-46 177
Msa0320010 AT3G06250.2 27.116 579 334 19 45 604 190 699 2.93e-45 174
Msa0320010 AT3G06250.1 27.116 579 334 19 45 604 190 699 2.93e-45 174
Msa0320010 AT3G06250.3 27.116 579 334 19 45 604 190 699 2.93e-45 174
Msa0320010 AT1G80010.1 26.271 590 379 18 45 605 95 657 7.51e-43 166
Msa0320010 AT5G18960.2 25.352 568 361 16 45 604 211 723 4.04e-42 165
Msa0320010 AT5G18960.1 25.352 568 361 16 45 604 211 723 4.04e-42 165
Msa0320010 AT2G32250.5 23.090 576 364 11 48 608 41 552 5.00e-42 164
Msa0320010 AT2G32250.2 23.090 576 364 11 48 608 41 552 5.96e-42 164
Msa0320010 AT2G32250.4 23.090 576 364 11 48 608 41 552 5.96e-42 164
Msa0320010 AT2G32250.6 23.090 576 364 11 48 608 41 552 6.77e-42 164
Msa0320010 AT2G32250.1 23.090 576 364 11 48 608 41 552 6.77e-42 164
Msa0320010 AT2G32250.3 23.090 576 364 11 48 608 41 552 6.77e-42 164
Msa0320010 AT4G19990.1 25.806 496 320 8 116 604 43 497 8.85e-42 163
Msa0320010 AT2G32250.7 23.037 573 362 11 51 608 3 511 1.78e-41 162
Msa0320010 AT2G32250.8 23.037 573 362 11 51 608 3 511 2.11e-41 162
Msa0320010 AT4G38170.1 28.382 377 254 8 236 604 26 394 1.96e-40 157
Msa0320010 AT3G07500.1 26.484 219 142 7 15 225 3 210 1.02e-11 65.9

Find 178 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAAGCAAATGCATTATT+TGG 0.110665 2_4:+20231474 Msa0320010:three_prime_UTR
CATCTTCAAAAGGTTTATTT+TGG 0.113706 2_4:-20227611 None:intergenic
TCCAAATATTGTATCCTTTC+AGG 0.144098 2_4:-20231034 None:intergenic
ATGACATGGTGTTGGGAATT+TGG 0.193918 2_4:+20228177 Msa0320010:CDS
ATTCAATCATATGAGGTATT+TGG 0.211487 2_4:+20228113 Msa0320010:CDS
GTTCCATCGGCTCTACAATT+TGG 0.214855 2_4:+20230228 Msa0320010:CDS
ACCTCAATATGCATCCTTTC+TGG 0.234586 2_4:+20230751 Msa0320010:CDS
GATACAATATTTGGAATCTT+TGG 0.243804 2_4:+20231042 Msa0320010:CDS
GCCTGAAAGGATACAATATT+TGG 0.244750 2_4:+20231033 Msa0320010:CDS
TCACTTCAACTGTATGAAAT+TGG 0.252951 2_4:+20226268 Msa0320010:five_prime_UTR
TGACATTATGCAGGCTTTCT+TGG 0.255053 2_4:+20230024 Msa0320010:intron
TATACTCATTAAGGACATTC+TGG 0.255249 2_4:+20230332 Msa0320010:CDS
TTTGGTTTCAACACTTCTAA+TGG 0.258812 2_4:+20231060 Msa0320010:CDS
CAAAAGGCATGTTTACTTTC+GGG 0.259449 2_4:-20230127 None:intergenic
AAGGCAAATGTTAAGATTAA+TGG 0.269409 2_4:+20227872 Msa0320010:CDS
GTGTTAGAATCATCCGAAAA+TGG 0.272557 2_4:+20227333 Msa0320010:CDS
CTTGACAGAATTGTTTCTTC+TGG 0.282713 2_4:-20227399 None:intergenic
GTCCCTGAATGGCGTGTTAC+TGG 0.284993 2_4:+20227723 Msa0320010:CDS
ATACATGCGTATTGTGAAAA+AGG 0.311255 2_4:+20227689 Msa0320010:CDS
ACAAATCTTTGACCAATAAA+AGG 0.311831 2_4:-20227444 None:intergenic
GCATACTTTCATCCCGTAGA+AGG 0.316318 2_4:-20228244 None:intergenic
TGCTAGTTGCACCATGAAAA+TGG 0.316918 2_4:-20231003 None:intergenic
CCGTTGGATGAAAACGTTAA+TGG 0.319103 2_4:-20230416 None:intergenic
TGGCTTGGATTGGACAATAA+TGG 0.319336 2_4:+20228197 Msa0320010:CDS
ACAAAAGGCATGTTTACTTT+CGG 0.321090 2_4:-20230128 None:intergenic
TTGAGGCGATATTTCTTTGC+AGG 0.323223 2_4:+20230367 Msa0320010:CDS
TTATTAGCCTATACTCATTA+AGG 0.323374 2_4:+20230323 Msa0320010:CDS
GAGGAGGTTGCAAAGTGTTT+TGG 0.325029 2_4:+20230819 Msa0320010:CDS
GACATTATGCAGGCTTTCTT+GGG 0.327633 2_4:+20230025 Msa0320010:intron
CCTCATGATTCCATGGCTTT+AGG 0.327738 2_4:+20231274 Msa0320010:CDS
AACGATTCCGACGCGATTTA+CGG 0.329179 2_4:+20226195 Msa0320010:five_prime_UTR
CAACTTATGTATCGTTGAAT+TGG 0.338021 2_4:-20231540 None:intergenic
ACAAAGCAAATGCATTATTT+GGG 0.339023 2_4:+20231475 Msa0320010:three_prime_UTR
CTCACATCTATCTCAGTAAA+AGG 0.340205 2_4:-20227927 None:intergenic
AGGCAAATGGTGGATAAATA+TGG 0.340475 2_4:+20230280 Msa0320010:CDS
GCTTTAGTTGCGCCCTTCTA+CGG 0.344963 2_4:+20228231 Msa0320010:CDS
AAACCAGTAACACGCCATTC+AGG 0.361653 2_4:-20227726 None:intergenic
GGATGATTCTAACACAAAAC+TGG 0.371625 2_4:-20227325 None:intergenic
TCACCATTATGTGCACAATA+TGG 0.372426 2_4:+20231361 Msa0320010:CDS
GTTGGGAATTTGGCTTGGAT+TGG 0.379159 2_4:+20228187 Msa0320010:CDS
GTGCTGCAACTAGCTCTTCT+TGG 0.380462 2_4:-20230730 None:intergenic
GATACTGATGAAATGATTCA+TGG 0.382834 2_4:+20231235 Msa0320010:CDS
AACCACAGCGAGATGATTTA+CGG 0.387968 2_4:-20227659 None:intergenic
CTTTAGTTGCGCCCTTCTAC+GGG 0.395434 2_4:+20228232 Msa0320010:CDS
GTCAGTACTAAAAGCAAAGT+TGG 0.401556 2_4:-20227283 None:intergenic
ATAACAAAATTAATTCAAAT+AGG 0.408107 2_4:-20231591 None:intergenic
CTCTTATCATCAGGAGATAT+CGG 0.414752 2_4:-20227813 None:intergenic
TCAAGATAGATAATAATAAC+AGG 0.416672 2_4:+20228057 Msa0320010:CDS
CACCGCACTCGAGGGAAAGA+TGG 0.417626 2_4:+20227534 Msa0320010:CDS
AATTCCCAACACCATGTCAT+AGG 0.419940 2_4:-20228174 None:intergenic
TGATCAGTCAGTATTGTTTG+TGG 0.423171 2_4:-20230067 None:intergenic
TGGATCTGATTGCTCAATAA+TGG 0.423232 2_4:+20231390 Msa0320010:CDS
CTAGAGAAAGGCATCAAACT+TGG 0.424991 2_4:+20227897 Msa0320010:CDS
AGATCTGCTGCAACACAATT+CGG 0.428586 2_4:-20226241 None:intergenic
TGGAGTTTGCTCAAGGCATA+AGG 0.430694 2_4:-20230710 None:intergenic
CAGAAAGTGTGCCTGAAAAC+AGG 0.432213 2_4:+20230650 Msa0320010:CDS
AATATGAGTGAAGATGCATT+AGG 0.432322 2_4:+20231421 Msa0320010:CDS
ATAAAACCAGTCAGAGAACT+TGG 0.433668 2_4:-20230167 None:intergenic
CCGATCCGATGGCGAAGCAT+TGG 0.446813 2_4:+20230965 Msa0320010:CDS
TTCTTCTGGTGTTTCCTCGA+CGG 0.451120 2_4:-20227385 None:intergenic
TTCTCTCCAAGTTCTCTGAC+TGG 0.459666 2_4:+20230161 Msa0320010:CDS
TTGAAGAAGACGCACCTCAT+TGG 0.460136 2_4:-20227781 None:intergenic
TCATCAGTATCTTCTACCTC+TGG 0.460431 2_4:-20231223 None:intergenic
GCCATCGGATCGGTAAATAT+TGG 0.462093 2_4:-20230955 None:intergenic
GGGAAAGATGGGGTTGGCCG+AGG 0.467224 2_4:+20227546 Msa0320010:CDS
CTTATGTATCGTTGAATTGG+AGG 0.467458 2_4:-20231537 None:intergenic
ACACGCAGCAGTGAACTTCC+CGG 0.472012 2_4:+20226170 Msa0320010:five_prime_UTR
ATATGAGTGAAGATGCATTA+GGG 0.474188 2_4:+20231422 Msa0320010:CDS
GAGAATATGCCATATACAAA+AGG 0.474322 2_4:-20230143 None:intergenic
TCACAATACGCATGTATGCT+TGG 0.475147 2_4:-20227683 None:intergenic
ATGGTGTTGGGAATTTGGCT+TGG 0.477966 2_4:+20228182 Msa0320010:CDS
CTCTTCTTGGAGTTTGCTCA+AGG 0.478172 2_4:-20230717 None:intergenic
CTCATCAATTCAATCATATG+AGG 0.479395 2_4:+20228106 Msa0320010:CDS
CGGATCGGTAAATATTGGTC+CGG 0.481468 2_4:-20230950 None:intergenic
CTCCTCCATCGGTCTGTGAA+TGG 0.482396 2_4:-20230802 None:intergenic
TGTCCATATTGTGCACATAA+TGG 0.485930 2_4:-20231364 None:intergenic
CTTGGGCTTCATGAAAGGAA+AGG 0.491097 2_4:+20230042 Msa0320010:CDS
ATACTCATTAAGGACATTCT+GGG 0.491639 2_4:+20230333 Msa0320010:CDS
GAGGCCTATGACATGGTGTT+GGG 0.491952 2_4:+20228170 Msa0320010:CDS
ACCGCACTCGAGGGAAAGAT+GGG 0.494580 2_4:+20227535 Msa0320010:CDS
GTGGCAGCATGGGATTCTAT+AGG 0.495991 2_4:-20230677 None:intergenic
CAGCTCCATCATCGTCAAGC+TGG 0.500752 2_4:+20226143 Msa0320010:five_prime_UTR
ATATGCATGTTTGCTAAAGC+TGG 0.501799 2_4:+20227840 Msa0320010:CDS
TCGGCTCTACAATTTGGAAA+TGG 0.504763 2_4:+20230234 Msa0320010:CDS
TGCTTGTGACCAAGTTTCAA+TGG 0.504988 2_4:+20231114 Msa0320010:CDS
GCTTTCTTGGGCTTCATGAA+AGG 0.511793 2_4:+20230037 Msa0320010:CDS
CATATGCGGCTCTTATCATC+AGG 0.512564 2_4:-20227822 None:intergenic
CATGGCTTTAGGCAAGCTAA+AGG 0.513686 2_4:+20231285 Msa0320010:CDS
TGAAGAAAGCTGGAGGCAAA+TGG 0.514494 2_4:+20230267 Msa0320010:CDS
TGACTCCAGCTTGACGATGA+TGG 0.518258 2_4:-20226148 None:intergenic
AACCAGTAACACGCCATTCA+GGG 0.519550 2_4:-20227725 None:intergenic
TGCAAATCCTCATGATTCCA+TGG 0.519849 2_4:+20231267 Msa0320010:CDS
CTTTAGCTTGCCTAAAGCCA+TGG 0.519923 2_4:-20231284 None:intergenic
AGAATGTCCTTAATGAGTAT+AGG 0.523345 2_4:-20230330 None:intergenic
GAGTACATTGCATGGTCCTA+CGG 0.523416 2_4:+20228083 Msa0320010:CDS
TGTAGTGAGTAGAAGTAACT+AGG 0.526214 2_4:+20231449 Msa0320010:exon
AAGGAGAGAAGGGCAAGAGA+TGG 0.526646 2_4:+20231304 Msa0320010:CDS
GCATCCTTTCTGGTTGATGA+AGG 0.529559 2_4:+20230761 Msa0320010:CDS
AGAGGCCTATGACATGGTGT+TGG 0.531606 2_4:+20228169 Msa0320010:CDS
TCAGTACTAAAAGCAAAGTT+GGG 0.536260 2_4:-20227282 None:intergenic
CTAGCAGGGATCAGCCTGAA+AGG 0.537919 2_4:+20231020 Msa0320010:CDS
AAATGGCACAGATTTGTCTC+AGG 0.538047 2_4:+20227350 Msa0320010:CDS
TATTGCATTTAGTTATGCAT+CGG 0.541431 2_4:+20231186 Msa0320010:CDS
GGACTCGGTCTGACATGTAC+TGG 0.541636 2_4:-20230395 None:intergenic
CACTTTGCAACCTCCTCCAT+CGG 0.542494 2_4:-20230813 None:intergenic
CAAAGCAAATGCATTATTTG+GGG 0.544923 2_4:+20231476 Msa0320010:three_prime_UTR
CAGTATCTTCTACCTCTGGC+AGG 0.547423 2_4:-20231219 None:intergenic
AGTAAGTAAAGTGGCAGCAT+GGG 0.548573 2_4:-20230687 None:intergenic
CTAAAGCTGGAATGTCAGTA+AGG 0.550415 2_4:+20227853 Msa0320010:CDS
TAGGCAAGCTAAAGGAGAGA+AGG 0.550540 2_4:+20231293 Msa0320010:CDS
CATACTTTCATCCCGTAGAA+GGG 0.551571 2_4:-20228243 None:intergenic
ATTTACGCCATGTGATGACC+TGG 0.551929 2_4:-20231161 None:intergenic
GAGTAAGTAAAGTGGCAGCA+TGG 0.552522 2_4:-20230688 None:intergenic
ACCAGAAAGGATGCATATTG+AGG 0.558654 2_4:-20230752 None:intergenic
AGATTAATGGAGCTAGAGAA+AGG 0.559539 2_4:+20227885 Msa0320010:CDS
AAGGCGTTCCTCAGTTTCAA+CGG 0.562753 2_4:-20231086 None:intergenic
ACCAATATTTACCGATCCGA+TGG 0.563133 2_4:+20230954 Msa0320010:CDS
GTGATAGCACCATTGAAACT+TGG 0.565620 2_4:-20231123 None:intergenic
ATTAGACGACACCGCACTCG+AGG 0.566031 2_4:+20227525 Msa0320010:CDS
AGTGGAAAGCTGAGTTCCAT+CGG 0.569331 2_4:+20230215 Msa0320010:CDS
CCAATGCTTCGCCATCGGAT+CGG 0.569640 2_4:-20230965 None:intergenic
CTTGGTCACAAGCAACATCA+AGG 0.570174 2_4:-20231105 None:intergenic
TGTGCACAATATGGACATGA+TGG 0.571985 2_4:+20231370 Msa0320010:CDS
AATCCCTCCTTGTTACTCCT+CGG 0.572238 2_4:-20227563 None:intergenic
GGCATAAGGAGTAAGTAAAG+TGG 0.572533 2_4:-20230696 None:intergenic
TGAGGTATTTGGTGATGCTG+TGG 0.573633 2_4:+20228124 Msa0320010:CDS
AGGCAAGCTAAAGGAGAGAA+GGG 0.573940 2_4:+20231294 Msa0320010:CDS
TGGATATGATTCTATGAACA+AGG 0.575281 2_4:+20226288 Msa0320010:five_prime_UTR
GCTCTACAATTTGGAAATGG+TGG 0.580387 2_4:+20230237 Msa0320010:CDS
GGATCGGTAAATATTGGTCC+GGG 0.581746 2_4:-20230949 None:intergenic
CAGCTGATGTGCTCCTGACA+AGG 0.582501 2_4:-20230845 None:intergenic
ACAACCTTCATCAACCAGAA+AGG 0.583485 2_4:-20230765 None:intergenic
ACAAACCAATGCTTCGCCAT+CGG 0.585042 2_4:-20230970 None:intergenic
TTTCCAAATTGTAGAGCCGA+TGG 0.585557 2_4:-20230231 None:intergenic
GAGCAAAGCAAAAGATGCAA+AGG 0.586020 2_4:+20230621 Msa0320010:CDS
CCATGTCATAGGCCTCTACT+CGG 0.588032 2_4:-20228163 None:intergenic
GGGGAGGAGGAAAGGCGCAA+AGG 0.588079 2_4:+20227634 Msa0320010:CDS
TGCCTGAAAACTCGAATAGA+CGG 0.595602 2_4:-20230874 None:intergenic
TAGAGAAAGGCATCAAACTT+GGG 0.598569 2_4:+20227898 Msa0320010:CDS
CTTTAGCAAACATGCATATG+CGG 0.599406 2_4:-20227836 None:intergenic
GTCATAGGCCTCTACTCGGT+AGG 0.599446 2_4:-20228159 None:intergenic
CACGTGTTAAAACTCTTCCC+AGG 0.602561 2_4:+20231143 Msa0320010:CDS
ATTGTGCACTCAAGAACCGT+TGG 0.604864 2_4:-20230432 None:intergenic
AATGGAATCCGTTGAAACTG+AGG 0.605527 2_4:+20231078 Msa0320010:CDS
TGATACAACCTACCGAGTAG+AGG 0.608589 2_4:+20228151 Msa0320010:CDS
TTAGACGACACCGCACTCGA+GGG 0.608668 2_4:+20227526 Msa0320010:CDS
TTTCATACAGTTGAAGTGAG+AGG 0.611594 2_4:-20226264 None:intergenic
CATTCACAGACCGATGGAGG+AGG 0.612738 2_4:+20230803 Msa0320010:CDS
ACTCGAGGGAAAGATGGGGT+TGG 0.615959 2_4:+20227540 Msa0320010:CDS
TTGGGTCGCAATATGATGAG+TGG 0.618636 2_4:+20230197 Msa0320010:CDS
CACCATTCACAGACCGATGG+AGG 0.619448 2_4:+20230800 Msa0320010:CDS
TGATTGAATTGATGAGCCGT+AGG 0.623124 2_4:-20228099 None:intergenic
TAAGTTGTCTACCACTCTTG+TGG 0.623469 2_4:+20231556 Msa0320010:three_prime_UTR
CCGAGTAGAGGCCTATGACA+TGG 0.623531 2_4:+20228163 Msa0320010:CDS
AAAGCAAATGCATTATTTGG+GGG 0.625057 2_4:+20231477 Msa0320010:three_prime_UTR
CCCCATCTTTCCCTCGAGTG+CGG 0.631305 2_4:-20227536 None:intergenic
GATGAAAACGTTAATGGACT+CGG 0.633126 2_4:-20230410 None:intergenic
CCTAAAGCCATGGAATCATG+AGG 0.642544 2_4:-20231274 None:intergenic
ACTGACAGCAGAATGTCAGA+AGG 0.645913 2_4:+20227300 Msa0320010:exon
GATTTGTCTCAGGATGACAT+TGG 0.649568 2_4:+20227360 Msa0320010:CDS
AGAAAGCTGGAGGCAAATGG+TGG 0.650737 2_4:+20230270 Msa0320010:CDS
ACAGGCTCGAGTACATTGCA+TGG 0.652102 2_4:+20228075 Msa0320010:CDS
TACTGACTGATCATAACACA+TGG 0.653234 2_4:+20230077 Msa0320010:CDS
TGAGTTGTTAAAATCCAATG+AGG 0.655034 2_4:+20227767 Msa0320010:CDS
TTTGACCAATAAAAGGAACA+AGG 0.658851 2_4:-20227437 None:intergenic
AGACACCATTCACAGACCGA+TGG 0.663369 2_4:+20230797 Msa0320010:CDS
GGATGACATTGGCACCGTCG+AGG 0.663757 2_4:+20227371 Msa0320010:CDS
ATGGCGGCCGTAAATCGCGT+CGG 0.672590 2_4:-20226202 None:intergenic
ACTCTTCCCAGGTCATCACA+TGG 0.672595 2_4:+20231154 Msa0320010:CDS
TTTACGCCATGTGATGACCT+GGG 0.676760 2_4:-20231160 None:intergenic
GGGTTGGCCGAGGAGTAACA+AGG 0.686418 2_4:+20227556 Msa0320010:CDS
TGGCCGAGGAGTAACAAGGA+GGG 0.687273 2_4:+20227560 Msa0320010:CDS
AACCGTAAATCATCTCGCTG+TGG 0.688131 2_4:+20227657 Msa0320010:CDS
TTTGGGGAAATCCACCGCGG+TGG 0.689587 2_4:-20227593 None:intergenic
GGATTCATTGATCCTGCCAG+AGG 0.692463 2_4:+20231207 Msa0320010:CDS
TTGGCCGAGGAGTAACAAGG+AGG 0.692981 2_4:+20227559 Msa0320010:CDS
TTGATCTTAGTAGAAAACGT+AGG 0.700882 2_4:+20231329 Msa0320010:CDS
CCGCACTCGAGGGAAAGATG+GGG 0.744349 2_4:+20227536 Msa0320010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATGGATTTTTTTTTTTT+TGG + chr2_4:20229068-20229087 Msa0320010:intron 10.0%
!!! AAAATTTTCTATACAAATAT+TGG - chr2_4:20229950-20229969 None:intergenic 10.0%
!! TAGTAAATTATAGTTAATTA+TGG - chr2_4:20230564-20230583 None:intergenic 10.0%
!! ATAACAAAATTAATTCAAAT+AGG - chr2_4:20231594-20231613 None:intergenic 10.0%
!! AAATTAATAAAGTGAGAAAT+GGG - chr2_4:20226320-20226339 None:intergenic 15.0%
!!! CATTTTTTTTTTAGTATTCA+GGG + chr2_4:20226367-20226386 Msa0320010:intron 15.0%
!!! GTGTATGTTATTTAATAATT+GGG + chr2_4:20226509-20226528 Msa0320010:intron 15.0%
!!! TGTATGTTATTTAATAATTG+GGG + chr2_4:20226510-20226529 Msa0320010:intron 15.0%
!! ATTATATGCTATCATTAAAA+AGG - chr2_4:20228456-20228475 None:intergenic 15.0%
!!! TCTTTTAATATATAGATGAA+GGG - chr2_4:20228629-20228648 None:intergenic 15.0%
!!! ATCTATTTTCTAAATTTTCA+TGG + chr2_4:20228843-20228862 Msa0320010:intron 15.0%
!!! TGATCTTATTTTAAAGTTTT+AGG + chr2_4:20228925-20228944 Msa0320010:intron 15.0%
!!! GATCTTATTTTAAAGTTTTA+GGG + chr2_4:20228926-20228945 Msa0320010:intron 15.0%
!! TTAGGGAAAAAAATTAAAAA+AGG + chr2_4:20228943-20228962 Msa0320010:intron 15.0%
!!! AAAGTTTTAATCTTGAATAA+TGG + chr2_4:20229052-20229071 Msa0320010:intron 15.0%
!!! AATTTTGCCTAATAAATATT+TGG + chr2_4:20229463-20229482 Msa0320010:intron 15.0%
!!! ATTTTGCCTAATAAATATTT+GGG + chr2_4:20229464-20229483 Msa0320010:intron 15.0%
!! AATTAACTATAATTTACTAC+AGG + chr2_4:20230565-20230584 Msa0320010:intron 15.0%
!! AATTAATAAAGTGAGAAATG+GGG - chr2_4:20226319-20226338 None:intergenic 20.0%
!! GAAATTAATAAAGTGAGAAA+TGG - chr2_4:20226321-20226340 None:intergenic 20.0%
!!! GCATTTTTTTTTTAGTATTC+AGG + chr2_4:20226366-20226385 Msa0320010:intron 20.0%
!!! CGTGTATGTTATTTAATAAT+TGG + chr2_4:20226508-20226527 Msa0320010:intron 20.0%
!!! AATATTTGTTAGATCATTCT+AGG + chr2_4:20227046-20227065 Msa0320010:intron 20.0%
!!! ATCTTCAAAAGGTTTATTTT+GGG - chr2_4:20227613-20227632 None:intergenic 20.0%
!!! AAAATAAACCTTTTGAAGAT+GGG + chr2_4:20227613-20227632 Msa0320010:CDS 20.0%
!! TCAAGATAGATAATAATAAC+AGG + chr2_4:20228057-20228076 Msa0320010:CDS 20.0%
!!! TCTTTAGAAAAACATATACA+TGG + chr2_4:20228504-20228523 Msa0320010:intron 20.0%
!!! CTCTTTTAATATATAGATGA+AGG - chr2_4:20228630-20228649 None:intergenic 20.0%
!! ATTCTTAACTCATAATATGT+GGG - chr2_4:20229376-20229395 None:intergenic 20.0%
!! GAAATAACTTAAAGGATTAT+AGG + chr2_4:20229437-20229456 Msa0320010:intron 20.0%
!! CTTAAACCCAAATATTTATT+AGG - chr2_4:20229473-20229492 None:intergenic 20.0%
!! TTAGGTATGTATTAATGTTA+AGG - chr2_4:20229576-20229595 None:intergenic 20.0%
!!! AAGAAACATATGAACTTTTA+TGG - chr2_4:20229608-20229627 None:intergenic 20.0%
!! TTAAAAAGTTCACATGTTTA+AGG - chr2_4:20229661-20229680 None:intergenic 20.0%
!!! AAAAAGGTCACTTTTTTTTT+TGG - chr2_4:20229686-20229705 None:intergenic 20.0%
!! AAACAAGACATTGAAAAAAA+AGG - chr2_4:20229702-20229721 None:intergenic 20.0%
!!! ATATCTCTCCATTTTTTTTT+AGG + chr2_4:20230493-20230512 Msa0320010:intron 20.0%
!! TATTTGCTCCTAAAAAAAAA+TGG - chr2_4:20230504-20230523 None:intergenic 20.0%
!!! TTTTTTTTAGTATTCAGGGT+TGG + chr2_4:20226371-20226390 Msa0320010:intron 25.0%
!!! ATTTTCAATCGATTCAATGT+GGG - chr2_4:20226548-20226567 None:intergenic 25.0%
! TTGAATCGATTGAAAATGTT+CGG + chr2_4:20226551-20226570 Msa0320010:intron 25.0%
! AATCTTGATAAAACAATCCT+TGG - chr2_4:20226853-20226872 None:intergenic 25.0%
!!! TGGTCTAGTTTTTAAAACAT+TGG + chr2_4:20226940-20226959 Msa0320010:intron 25.0%
! AAGTAATCTGATCCTTTATT+TGG + chr2_4:20227092-20227111 Msa0320010:intron 25.0%
! ACAAATCTTTGACCAATAAA+AGG - chr2_4:20227447-20227466 None:intergenic 25.0%
!!! TCTTCAAAAGGTTTATTTTG+GGG - chr2_4:20227612-20227631 None:intergenic 25.0%
!! CATCTTCAAAAGGTTTATTT+TGG - chr2_4:20227614-20227633 None:intergenic 25.0%
!!! CAAAATAAACCTTTTGAAGA+TGG + chr2_4:20227612-20227631 Msa0320010:CDS 25.0%
!!! AAATAAACCTTTTGAAGATG+GGG + chr2_4:20227614-20227633 Msa0320010:CDS 25.0%
! AAGGCAAATGTTAAGATTAA+TGG + chr2_4:20227872-20227891 Msa0320010:CDS 25.0%
!! ATTCAATCATATGAGGTATT+TGG + chr2_4:20228113-20228132 Msa0320010:CDS 25.0%
! AAGGTATGATAATAAACGTA+TGG + chr2_4:20228287-20228306 Msa0320010:intron 25.0%
! ATGCTATCATTAAAAAGGTA+AGG - chr2_4:20228451-20228470 None:intergenic 25.0%
!! TTTCTAAAGAATTGTAGAGA+AGG - chr2_4:20228494-20228513 None:intergenic 25.0%
! TATGTGGAAAAACCAAAAAT+GGG - chr2_4:20228573-20228592 None:intergenic 25.0%
! ATATGTGGAAAAACCAAAAA+TGG - chr2_4:20228574-20228593 None:intergenic 25.0%
! AATAGATAACTAACTAGACA+AGG - chr2_4:20228830-20228849 None:intergenic 25.0%
!!! CCAAGAATATGTTTTGAAAT+TGG - chr2_4:20229009-20229028 None:intergenic 25.0%
! CCAATTTCAAAACATATTCT+TGG + chr2_4:20229006-20229025 Msa0320010:intron 25.0%
! AAGGAAGATAAAAACTACAA+TGG - chr2_4:20229246-20229265 None:intergenic 25.0%
!! TTATCTTCCTTATGATTTTC+AGG + chr2_4:20229255-20229274 Msa0320010:intron 25.0%
!! TATCTTCCTTATGATTTTCA+GGG + chr2_4:20229256-20229275 Msa0320010:intron 25.0%
! GATTCTTAACTCATAATATG+TGG - chr2_4:20229377-20229396 None:intergenic 25.0%
! ACTTGAACAAAAAGACATAA+AGG + chr2_4:20229398-20229417 Msa0320010:intron 25.0%
! AAAGACATAAAGGACTAATA+CGG + chr2_4:20229408-20229427 Msa0320010:intron 25.0%
!!! CTTTTATGGTTTTGGTATTT+AGG - chr2_4:20229594-20229613 None:intergenic 25.0%
!! CATATGAACTTTTATGGTTT+TGG - chr2_4:20229602-20229621 None:intergenic 25.0%
! TTACATGCATATGAAATTCA+AGG - chr2_4:20229773-20229792 None:intergenic 25.0%
!!! ACTGGTTTTATTTACTTCTT+GGG + chr2_4:20230179-20230198 Msa0320010:CDS 25.0%
!! TTATTAGCCTATACTCATTA+AGG + chr2_4:20230323-20230342 Msa0320010:CDS 25.0%
! TAACTATAATTTACTACAGG+TGG + chr2_4:20230568-20230587 Msa0320010:intron 25.0%
!! TCTTCTTTTAACCATTTTCA+TGG + chr2_4:20230992-20231011 Msa0320010:CDS 25.0%
!! GATACAATATTTGGAATCTT+TGG + chr2_4:20231042-20231061 Msa0320010:CDS 25.0%
! TATTGCATTTAGTTATGCAT+CGG + chr2_4:20231186-20231205 Msa0320010:CDS 25.0%
! TACAAAGCAAATGCATTATT+TGG + chr2_4:20231474-20231493 Msa0320010:three_prime_UTR 25.0%
! ACAAAGCAAATGCATTATTT+GGG + chr2_4:20231475-20231494 Msa0320010:three_prime_UTR 25.0%
TCACTTCAACTGTATGAAAT+TGG + chr2_4:20226268-20226287 Msa0320010:five_prime_UTR 30.0%
TGGATATGATTCTATGAACA+AGG + chr2_4:20226288-20226307 Msa0320010:five_prime_UTR 30.0%
TAGTGATGAATTTCATCTCA+AGG + chr2_4:20226404-20226423 Msa0320010:intron 30.0%
AGTGATGAATTTCATCTCAA+GGG + chr2_4:20226405-20226424 Msa0320010:intron 30.0%
!! CATTTTCAATCGATTCAATG+TGG - chr2_4:20226549-20226568 None:intergenic 30.0%
!!! CAATGTTTTGAAAACCGAAT+TGG + chr2_4:20226641-20226660 Msa0320010:intron 30.0%
ATGATTCAACTGCATTAAAC+TGG + chr2_4:20226691-20226710 Msa0320010:intron 30.0%
TGATTCAACTGCATTAAACT+GGG + chr2_4:20226692-20226711 Msa0320010:intron 30.0%
!!! GTTTAGCTTTTTTCTTGGTA+TGG + chr2_4:20226799-20226818 Msa0320010:intron 30.0%
!!! TTTTTTCTTGGTATGGAGTT+TGG + chr2_4:20226806-20226825 Msa0320010:intron 30.0%
! GTTTTATCAAGATTCGAACT+CGG + chr2_4:20226859-20226878 Msa0320010:intron 30.0%
! TTTTATCAAGATTCGAACTC+GGG + chr2_4:20226860-20226879 Msa0320010:intron 30.0%
TCTTCTTAAGCACCAAATAA+AGG - chr2_4:20227107-20227126 None:intergenic 30.0%
TCAGTACTAAAAGCAAAGTT+GGG - chr2_4:20227285-20227304 None:intergenic 30.0%
! GTTAACCTTGTTCCTTTTAT+TGG + chr2_4:20227432-20227451 Msa0320010:CDS 30.0%
TTTGACCAATAAAAGGAACA+AGG - chr2_4:20227440-20227459 None:intergenic 30.0%
! TGCAGTTTTGCTAAACAATT+TGG + chr2_4:20227495-20227514 Msa0320010:CDS 30.0%
!! AATAAACCTTTTGAAGATGG+GGG + chr2_4:20227615-20227634 Msa0320010:CDS 30.0%
ATACATGCGTATTGTGAAAA+AGG + chr2_4:20227689-20227708 Msa0320010:CDS 30.0%
TGAGTTGTTAAAATCCAATG+AGG + chr2_4:20227767-20227786 Msa0320010:CDS 30.0%
CTCATCAATTCAATCATATG+AGG + chr2_4:20228106-20228125 Msa0320010:CDS 30.0%
! TTTAAAGCCCATGAAAAAGA+CGG - chr2_4:20228269-20228288 None:intergenic 30.0%
CTTCTTGATTGCTTGATATT+TGG + chr2_4:20228330-20228349 Msa0320010:intron 30.0%
ATGTGGAAAAACCAAAAATG+GGG - chr2_4:20228572-20228591 None:intergenic 30.0%
AAATCGAGTGAATTTAGTGA+GGG - chr2_4:20228766-20228785 None:intergenic 30.0%
AAAATCGAGTGAATTTAGTG+AGG - chr2_4:20228767-20228786 None:intergenic 30.0%
! TTTTTGTGTTGCAGATCATA+TGG + chr2_4:20228783-20228802 Msa0320010:intron 30.0%
!! AGATCATATGGTTCTGTTTT+AGG + chr2_4:20228795-20228814 Msa0320010:intron 30.0%
ACTTGATGTTGAAATCCTTT+GGG - chr2_4:20228904-20228923 None:intergenic 30.0%
GAAATTGGAACTACAACTAT+GGG - chr2_4:20228994-20229013 None:intergenic 30.0%
TGAAATTGGAACTACAACTA+TGG - chr2_4:20228995-20229014 None:intergenic 30.0%
! GTGAGATTTTGTTACATGTA+TGG + chr2_4:20229028-20229047 Msa0320010:intron 30.0%
TTAGACTTATACTGAGAAGT+TGG + chr2_4:20229093-20229112 Msa0320010:intron 30.0%
TTTGATCATACAAGCTATGA+TGG + chr2_4:20229150-20229169 Msa0320010:intron 30.0%
!! CAATTGAAACCTTTGAAATC+CGG - chr2_4:20229207-20229226 None:intergenic 30.0%
ATGAAACCCTGAAAATCATA+AGG - chr2_4:20229265-20229284 None:intergenic 30.0%
!! ATGATTTTCAGGGTTTCATA+AGG + chr2_4:20229266-20229285 Msa0320010:intron 30.0%
CTGTTACTAAAATGTCTATG+TGG - chr2_4:20229345-20229364 None:intergenic 30.0%
!! CACATAGACATTTTAGTAAC+AGG + chr2_4:20229343-20229362 Msa0320010:intron 30.0%
GGCACAATGAAATAACTTAA+AGG + chr2_4:20229429-20229448 Msa0320010:intron 30.0%
!!! TTTCAATGTCTTGTTTTGTG+TGG + chr2_4:20229706-20229725 Msa0320010:intron 30.0%
ATTAGTGCCATAAAATACAC+CGG + chr2_4:20229816-20229835 Msa0320010:intron 30.0%
! TATTCTTCCGGTGTATTTTA+TGG - chr2_4:20229826-20229845 None:intergenic 30.0%
!!! GACACATTTTTTGTTTCCTA+GGG - chr2_4:20229884-20229903 None:intergenic 30.0%
!!! AGACACATTTTTTGTTTCCT+AGG - chr2_4:20229885-20229904 None:intergenic 30.0%
TCATCTTATTGACATTATGC+AGG + chr2_4:20230015-20230034 Msa0320010:intron 30.0%
! ACAAAAGGCATGTTTACTTT+CGG - chr2_4:20230131-20230150 None:intergenic 30.0%
! GTAAACATGCCTTTTGTATA+TGG + chr2_4:20230134-20230153 Msa0320010:CDS 30.0%
GAGAATATGCCATATACAAA+AGG - chr2_4:20230146-20230165 None:intergenic 30.0%
!!! GACTGGTTTTATTTACTTCT+TGG + chr2_4:20230178-20230197 Msa0320010:CDS 30.0%
AGAATGTCCTTAATGAGTAT+AGG - chr2_4:20230333-20230352 None:intergenic 30.0%
TATACTCATTAAGGACATTC+TGG + chr2_4:20230332-20230351 Msa0320010:CDS 30.0%
ATACTCATTAAGGACATTCT+GGG + chr2_4:20230333-20230352 Msa0320010:CDS 30.0%
AAGAAATATCGCCTCAAAAA+TGG - chr2_4:20230364-20230383 None:intergenic 30.0%
!! TTTCCTGTAGCTTTGTTTAT+TGG + chr2_4:20230529-20230548 Msa0320010:intron 30.0%
ATACCAATAAACAAAGCTAC+AGG - chr2_4:20230535-20230554 None:intergenic 30.0%
! TAATAACTGTTTTCACATCC+CGG + chr2_4:20230931-20230950 Msa0320010:CDS 30.0%
TCCAAATATTGTATCCTTTC+AGG - chr2_4:20231037-20231056 None:intergenic 30.0%
! TTTGGTTTCAACACTTCTAA+TGG + chr2_4:20231060-20231079 Msa0320010:CDS 30.0%
GATACTGATGAAATGATTCA+TGG + chr2_4:20231235-20231254 Msa0320010:CDS 30.0%
TTGATCTTAGTAGAAAACGT+AGG + chr2_4:20231329-20231348 Msa0320010:CDS 30.0%
AATATGAGTGAAGATGCATT+AGG + chr2_4:20231421-20231440 Msa0320010:CDS 30.0%
ATATGAGTGAAGATGCATTA+GGG + chr2_4:20231422-20231441 Msa0320010:CDS 30.0%
CAAAGCAAATGCATTATTTG+GGG + chr2_4:20231476-20231495 Msa0320010:three_prime_UTR 30.0%
AAAGCAAATGCATTATTTGG+GGG + chr2_4:20231477-20231496 Msa0320010:three_prime_UTR 30.0%
CAACTTATGTATCGTTGAAT+TGG - chr2_4:20231543-20231562 None:intergenic 30.0%
!!! AACACAATTCGGTTTTGAAG+AGG - chr2_4:20226233-20226252 None:intergenic 35.0%
TTTCATACAGTTGAAGTGAG+AGG - chr2_4:20226267-20226286 None:intergenic 35.0%
! ATCGATTCAATGTGGGATTT+GGG - chr2_4:20226541-20226560 None:intergenic 35.0%
! AATCGATTCAATGTGGGATT+TGG - chr2_4:20226542-20226561 None:intergenic 35.0%
AACTGGCACTATCTACTATT+CGG - chr2_4:20226748-20226767 None:intergenic 35.0%
!!! GTTCGGTTTAGCTTTTTTCT+TGG + chr2_4:20226794-20226813 Msa0320010:intron 35.0%
ACTGAGATAGTTACAGTACT+CGG - chr2_4:20226982-20227001 None:intergenic 35.0%
! AAACCTCAAAGTGCTTAGTT+AGG - chr2_4:20227014-20227033 None:intergenic 35.0%
!!! AACTAAGCACTTTGAGGTTT+TGG + chr2_4:20227014-20227033 Msa0320010:intron 35.0%
!!! ACTAAGCACTTTGAGGTTTT+GGG + chr2_4:20227015-20227034 Msa0320010:intron 35.0%
GTCAGTACTAAAAGCAAAGT+TGG - chr2_4:20227286-20227305 None:intergenic 35.0%
GGATGATTCTAACACAAAAC+TGG - chr2_4:20227328-20227347 None:intergenic 35.0%
GTGTTAGAATCATCCGAAAA+TGG + chr2_4:20227333-20227352 Msa0320010:CDS 35.0%
!!! AGACAAATCTGTGCCATTTT+CGG - chr2_4:20227349-20227368 None:intergenic 35.0%
! CTTGACAGAATTGTTTCTTC+TGG - chr2_4:20227402-20227421 None:intergenic 35.0%
CTCTTATCATCAGGAGATAT+CGG - chr2_4:20227816-20227835 None:intergenic 35.0%
CTTTAGCAAACATGCATATG+CGG - chr2_4:20227839-20227858 None:intergenic 35.0%
! ATATGCATGTTTGCTAAAGC+TGG + chr2_4:20227840-20227859 Msa0320010:CDS 35.0%
AGATTAATGGAGCTAGAGAA+AGG + chr2_4:20227885-20227904 Msa0320010:CDS 35.0%
!! TAGAGAAAGGCATCAAACTT+GGG + chr2_4:20227898-20227917 Msa0320010:CDS 35.0%
CTCACATCTATCTCAGTAAA+AGG - chr2_4:20227930-20227949 None:intergenic 35.0%
!! GTTGCAGTCTTTTAGAAATG+TGG + chr2_4:20227956-20227975 Msa0320010:CDS 35.0%
!! AAAGTATGCCGTCTTTTTCA+TGG + chr2_4:20228258-20228277 Msa0320010:CDS 35.0%
!! AAGTATGCCGTCTTTTTCAT+GGG + chr2_4:20228259-20228278 Msa0320010:CDS 35.0%
!! GTCTTTTTCATGGGCTTTAA+AGG + chr2_4:20228268-20228287 Msa0320010:CDS 35.0%
TGGTGTAACAACCTTGTATT+TGG + chr2_4:20228307-20228326 Msa0320010:intron 35.0%
CAATCAAGAAGCCAAATACA+AGG - chr2_4:20228321-20228340 None:intergenic 35.0%
!! GATTGCTTGATATTTGGTGT+AGG + chr2_4:20228336-20228355 Msa0320010:intron 35.0%
GCAATAGCTAGAACTATTGT+GGG - chr2_4:20228376-20228395 None:intergenic 35.0%
AGCAATAGCTAGAACTATTG+TGG - chr2_4:20228377-20228396 None:intergenic 35.0%
CAATACCATCATACCTTATC+GGG - chr2_4:20228407-20228426 None:intergenic 35.0%
GCAATACCATCATACCTTAT+CGG - chr2_4:20228408-20228427 None:intergenic 35.0%
CGTGTCTGATATGGATTTAA+CGG + chr2_4:20228532-20228551 Msa0320010:intron 35.0%
GGAAGATAGAAGAGAATATG+TGG - chr2_4:20228589-20228608 None:intergenic 35.0%
ACAAAGGAGAAGAACTCTTT+GGG - chr2_4:20228682-20228701 None:intergenic 35.0%
! AATCCTTTGGGTTTGAAGTT+GGG - chr2_4:20228892-20228911 None:intergenic 35.0%
! AAATCCTTTGGGTTTGAAGT+TGG - chr2_4:20228893-20228912 None:intergenic 35.0%
CACTTGATGTTGAAATCCTT+TGG - chr2_4:20228905-20228924 None:intergenic 35.0%
AGGGTTTCATAAGGTGAAAT+GGG + chr2_4:20229275-20229294 Msa0320010:intron 35.0%
TTCACATGTTTAAGGAGCAA+AGG - chr2_4:20229653-20229672 None:intergenic 35.0%
!! ATGCATGTAAAAAGCACTGT+TGG + chr2_4:20229783-20229802 Msa0320010:intron 35.0%
!! TGCATGTAAAAAGCACTGTT+GGG + chr2_4:20229784-20229803 Msa0320010:intron 35.0%
! GGTGTATTTTATGGCACTAA+TGG - chr2_4:20229817-20229836 None:intergenic 35.0%
ACTCGTCTATTGAATCTAGT+AGG + chr2_4:20229854-20229873 Msa0320010:intron 35.0%
!!! CATTTTTTGTTTCCTAGGGA+AGG - chr2_4:20229880-20229899 None:intergenic 35.0%
TGATCAGTCAGTATTGTTTG+TGG - chr2_4:20230070-20230089 None:intergenic 35.0%
! TACTGACTGATCATAACACA+TGG + chr2_4:20230077-20230096 Msa0320010:CDS 35.0%
! CAAAAGGCATGTTTACTTTC+GGG - chr2_4:20230130-20230149 None:intergenic 35.0%
ATAAAACCAGTCAGAGAACT+TGG - chr2_4:20230170-20230189 None:intergenic 35.0%
!! TGGAAGATTTTGAAGAAAGC+TGG + chr2_4:20230257-20230276 Msa0320010:CDS 35.0%
!! AAGATTTTGAAGAAAGCTGG+AGG + chr2_4:20230260-20230279 Msa0320010:CDS 35.0%
!! AGGCAAATGGTGGATAAATA+TGG + chr2_4:20230280-20230299 Msa0320010:CDS 35.0%
!! GATGAAAACGTTAATGGACT+CGG - chr2_4:20230413-20230432 None:intergenic 35.0%
! CCATTAACGTTTTCATCCAA+CGG + chr2_4:20230416-20230435 Msa0320010:CDS 35.0%
!! ACTTGCTCTAAAAAACGTTC+TGG - chr2_4:20230463-20230482 None:intergenic 35.0%
GCCTGAAAGGATACAATATT+TGG + chr2_4:20231033-20231052 Msa0320010:CDS 35.0%
TCACCATTATGTGCACAATA+TGG + chr2_4:20231361-20231380 Msa0320010:CDS 35.0%
TGTCCATATTGTGCACATAA+TGG - chr2_4:20231367-20231386 None:intergenic 35.0%
TGGATCTGATTGCTCAATAA+TGG + chr2_4:20231390-20231409 Msa0320010:CDS 35.0%
TGTAGTGAGTAGAAGTAACT+AGG + chr2_4:20231449-20231468 Msa0320010:exon 35.0%
CTTATGTATCGTTGAATTGG+AGG - chr2_4:20231540-20231559 None:intergenic 35.0%
! CTGAAATTTTTCCACAAGAG+TGG - chr2_4:20231570-20231589 None:intergenic 35.0%
CACTCTTGTGGAAAAATTTC+AGG + chr2_4:20231568-20231587 Msa0320010:three_prime_UTR 35.0%
!!! ACAATTCGGTTTTGAAGAGG+TGG - chr2_4:20226230-20226249 None:intergenic 40.0%
AGATCTGCTGCAACACAATT+CGG - chr2_4:20226244-20226263 None:intergenic 40.0%
AACCGAATTGGACATTGAAC+TGG + chr2_4:20226653-20226672 Msa0320010:intron 40.0%
CACCAGTTCAATGTCCAATT+CGG - chr2_4:20226658-20226677 None:intergenic 40.0%
AATTGGACATTGAACTGGTG+AGG + chr2_4:20226658-20226677 Msa0320010:intron 40.0%
ATTAAACTGGGACGAAACTG+CGG + chr2_4:20226704-20226723 Msa0320010:intron 40.0%
TAGTAGATAGTGCCAGTTCA+TGG + chr2_4:20226750-20226769 Msa0320010:intron 40.0%
CAACCAGTTAAACCATGAAC+TGG - chr2_4:20226765-20226784 None:intergenic 40.0%
GTTTAACTGGTTGAACCATC+TGG + chr2_4:20226772-20226791 Msa0320010:intron 40.0%
AAAAGCTAAACCGAACCAGA+TGG - chr2_4:20226790-20226809 None:intergenic 40.0%
AATCCTTGGCCAACTTTACT+TGG - chr2_4:20226839-20226858 None:intergenic 40.0%
CACTTAAGTACAACTCGTTG+AGG - chr2_4:20226890-20226909 None:intergenic 40.0%
CTCAACGAGTTGTACTTAAG+TGG + chr2_4:20226888-20226907 Msa0320010:intron 40.0%
ATCACGTGAGCTTAATCACT+TGG + chr2_4:20226920-20226939 Msa0320010:intron 40.0%
AAGTGCTTAGTTAGGACTAG+CGG - chr2_4:20227006-20227025 None:intergenic 40.0%
AGTCCTAACTAAGCACTTTG+AGG + chr2_4:20227008-20227027 Msa0320010:intron 40.0%
TTTCTCATTGCTCGTCTTTC+AGG + chr2_4:20227244-20227263 Msa0320010:intron 40.0%
AAATGGCACAGATTTGTCTC+AGG + chr2_4:20227350-20227369 Msa0320010:CDS 40.0%
GATTTGTCTCAGGATGACAT+TGG + chr2_4:20227360-20227379 Msa0320010:CDS 40.0%
AACCACAGCGAGATGATTTA+CGG - chr2_4:20227662-20227681 None:intergenic 40.0%
TCACAATACGCATGTATGCT+TGG - chr2_4:20227686-20227705 None:intergenic 40.0%
!! CAGATTTTGATGTCCCTGAA+TGG + chr2_4:20227712-20227731 Msa0320010:CDS 40.0%
CTAAAGCTGGAATGTCAGTA+AGG + chr2_4:20227853-20227872 Msa0320010:CDS 40.0%
!! CTAGAGAAAGGCATCAAACT+TGG + chr2_4:20227897-20227916 Msa0320010:CDS 40.0%
TGATTGAATTGATGAGCCGT+AGG - chr2_4:20228102-20228121 None:intergenic 40.0%
AATTCCCAACACCATGTCAT+AGG - chr2_4:20228177-20228196 None:intergenic 40.0%
! ATGACATGGTGTTGGGAATT+TGG + chr2_4:20228177-20228196 Msa0320010:CDS 40.0%
! TGGCTTGGATTGGACAATAA+TGG + chr2_4:20228197-20228216 Msa0320010:CDS 40.0%
CATACTTTCATCCCGTAGAA+GGG - chr2_4:20228246-20228265 None:intergenic 40.0%
!!! ATTGCTTGTTTTGCCCGATA+AGG + chr2_4:20228391-20228410 Msa0320010:intron 40.0%
! TTTTGCCCGATAAGGTATGA+TGG + chr2_4:20228399-20228418 Msa0320010:intron 40.0%
AGAATTGTAGAGAAGGTCGA+CGG - chr2_4:20228487-20228506 None:intergenic 40.0%
!! ATGGTGTTACGTGTCTGATA+TGG + chr2_4:20228523-20228542 Msa0320010:intron 40.0%
TGGATTTAACGGCGTTAACA+TGG + chr2_4:20228543-20228562 Msa0320010:intron 40.0%
! TAACATGGCTTCCCCATTTT+TGG + chr2_4:20228558-20228577 Msa0320010:intron 40.0%
CAAAGGAGAAGAACTCTTTG+GGG - chr2_4:20228681-20228700 None:intergenic 40.0%
CACAAAGGAGAAGAACTCTT+TGG - chr2_4:20228683-20228702 None:intergenic 40.0%
CAAAGAGTTCTTCTCCTTTG+TGG + chr2_4:20228681-20228700 Msa0320010:intron 40.0%
ATACAAGCTATGATGGCTTG+TGG + chr2_4:20229157-20229176 Msa0320010:intron 40.0%
CAGGGTTTCATAAGGTGAAA+TGG + chr2_4:20229274-20229293 Msa0320010:intron 40.0%
GGGTTTCATAAGGTGAAATG+GGG + chr2_4:20229276-20229295 Msa0320010:intron 40.0%
!! ATGCTACAGTAGAAGTGTCT+AGG + chr2_4:20229505-20229524 Msa0320010:intron 40.0%
!! GCATGTAAAAAGCACTGTTG+GGG + chr2_4:20229785-20229804 Msa0320010:intron 40.0%
!! AAAAAGCACTGTTGGGGTAT+CGG + chr2_4:20229791-20229810 Msa0320010:intron 40.0%
GAGTGAAGAGACTATTCTTC+CGG - chr2_4:20229838-20229857 None:intergenic 40.0%
TGACATTATGCAGGCTTTCT+TGG + chr2_4:20230024-20230043 Msa0320010:intron 40.0%
GACATTATGCAGGCTTTCTT+GGG + chr2_4:20230025-20230044 Msa0320010:intron 40.0%
TTTCCAAATTGTAGAGCCGA+TGG - chr2_4:20230234-20230253 None:intergenic 40.0%
TCGGCTCTACAATTTGGAAA+TGG + chr2_4:20230234-20230253 Msa0320010:CDS 40.0%
GCTCTACAATTTGGAAATGG+TGG + chr2_4:20230237-20230256 Msa0320010:CDS 40.0%
!! TCTGGGCTTTACCATTTTTG+AGG + chr2_4:20230350-20230369 Msa0320010:CDS 40.0%
TTGAGGCGATATTTCTTTGC+AGG + chr2_4:20230367-20230386 Msa0320010:CDS 40.0%
CCGTTGGATGAAAACGTTAA+TGG - chr2_4:20230419-20230438 None:intergenic 40.0%
!! GTTGATTTTAATGACCGAGC+CGG + chr2_4:20230599-20230618 Msa0320010:CDS 40.0%
! TTGCATCTTTTGCTTTGCTC+CGG - chr2_4:20230621-20230640 None:intergenic 40.0%
GAGCAAAGCAAAAGATGCAA+AGG + chr2_4:20230621-20230640 Msa0320010:CDS 40.0%
! CTATAGGTGAACCTGTTTTC+AGG - chr2_4:20230664-20230683 None:intergenic 40.0%
AGTAAGTAAAGTGGCAGCAT+GGG - chr2_4:20230690-20230709 None:intergenic 40.0%
GGCATAAGGAGTAAGTAAAG+TGG - chr2_4:20230699-20230718 None:intergenic 40.0%
ACCTCAATATGCATCCTTTC+TGG + chr2_4:20230751-20230770 Msa0320010:CDS 40.0%
ACCAGAAAGGATGCATATTG+AGG - chr2_4:20230755-20230774 None:intergenic 40.0%
ACAACCTTCATCAACCAGAA+AGG - chr2_4:20230768-20230787 None:intergenic 40.0%
!!! GGTTGATGAAGGTTGTTTTC+AGG + chr2_4:20230772-20230791 Msa0320010:CDS 40.0%
TGCCTGAAAACTCGAATAGA+CGG - chr2_4:20230877-20230896 None:intergenic 40.0%
ACCAATATTTACCGATCCGA+TGG + chr2_4:20230954-20230973 Msa0320010:CDS 40.0%
TGCTAGTTGCACCATGAAAA+TGG - chr2_4:20231006-20231025 None:intergenic 40.0%
! ATTTTCATGGTGCAACTAGC+AGG + chr2_4:20231005-20231024 Msa0320010:CDS 40.0%
! TTTTCATGGTGCAACTAGCA+GGG + chr2_4:20231006-20231025 Msa0320010:CDS 40.0%
AATGGAATCCGTTGAAACTG+AGG + chr2_4:20231078-20231097 Msa0320010:CDS 40.0%
TCATCAGTATCTTCTACCTC+TGG - chr2_4:20231226-20231245 None:intergenic 40.0%
TGCAAATCCTCATGATTCCA+TGG + chr2_4:20231267-20231286 Msa0320010:CDS 40.0%
TGTGCACAATATGGACATGA+TGG + chr2_4:20231370-20231389 Msa0320010:CDS 40.0%
TAAGTTGTCTACCACTCTTG+TGG + chr2_4:20231556-20231575 Msa0320010:three_prime_UTR 40.0%
AACGATTCCGACGCGATTTA+CGG + chr2_4:20226195-20226214 Msa0320010:five_prime_UTR 45.0%
!! TTTTGAAGAGGTGGCTATGG+CGG - chr2_4:20226221-20226240 None:intergenic 45.0%
TTAAACTGGGACGAAACTGC+GGG + chr2_4:20226705-20226724 Msa0320010:intron 45.0%
GTGCCAGTTCATGGTTTAAC+TGG + chr2_4:20226759-20226778 Msa0320010:intron 45.0%
ACTGGTTGAACCATCTGGTT+CGG + chr2_4:20226777-20226796 Msa0320010:intron 45.0%
! AGTGCTTAGTTAGGACTAGC+GGG - chr2_4:20227005-20227024 None:intergenic 45.0%
! CTAGGCTTGCTTTGTCTCTT+TGG + chr2_4:20227064-20227083 Msa0320010:intron 45.0%
ACTGACAGCAGAATGTCAGA+AGG + chr2_4:20227300-20227319 Msa0320010:exon 45.0%
TTCTTCTGGTGTTTCCTCGA+CGG - chr2_4:20227388-20227407 None:intergenic 45.0%
AATCCCTCCTTGTTACTCCT+CGG - chr2_4:20227566-20227585 None:intergenic 45.0%
!! TATTTTGGGGAAATCCACCG+CGG - chr2_4:20227599-20227618 None:intergenic 45.0%
!! AAACCTTTTGAAGATGGGGG+AGG + chr2_4:20227618-20227637 Msa0320010:CDS 45.0%
AACCGTAAATCATCTCGCTG+TGG + chr2_4:20227657-20227676 Msa0320010:CDS 45.0%
AACCAGTAACACGCCATTCA+GGG - chr2_4:20227728-20227747 None:intergenic 45.0%
AAACCAGTAACACGCCATTC+AGG - chr2_4:20227729-20227748 None:intergenic 45.0%
TTGAAGAAGACGCACCTCAT+TGG - chr2_4:20227784-20227803 None:intergenic 45.0%
CATATGCGGCTCTTATCATC+AGG - chr2_4:20227825-20227844 None:intergenic 45.0%
GAGTACATTGCATGGTCCTA+CGG + chr2_4:20228083-20228102 Msa0320010:CDS 45.0%
!! TGAGGTATTTGGTGATGCTG+TGG + chr2_4:20228124-20228143 Msa0320010:CDS 45.0%
TGATACAACCTACCGAGTAG+AGG + chr2_4:20228151-20228170 Msa0320010:CDS 45.0%
! ATGGTGTTGGGAATTTGGCT+TGG + chr2_4:20228182-20228201 Msa0320010:CDS 45.0%
!! GTTGGGAATTTGGCTTGGAT+TGG + chr2_4:20228187-20228206 Msa0320010:CDS 45.0%
GCATACTTTCATCCCGTAGA+AGG - chr2_4:20228247-20228266 None:intergenic 45.0%
TATAGATGAAGGGCCTAGTG+TGG - chr2_4:20228619-20228638 None:intergenic 45.0%
TCTCCTTTGTGGTGACAACA+TGG + chr2_4:20228692-20228711 Msa0320010:intron 45.0%
CTTCCATGTTGTCACCACAA+AGG - chr2_4:20228698-20228717 None:intergenic 45.0%
CTTTGTGGTGACAACATGGA+AGG + chr2_4:20228696-20228715 Msa0320010:intron 45.0%
! TTAGTGAGGGTGTGAGTGAA+GGG - chr2_4:20228753-20228772 None:intergenic 45.0%
! TTTAGTGAGGGTGTGAGTGA+AGG - chr2_4:20228754-20228773 None:intergenic 45.0%
GTACCCAACTTCAAACCCAA+AGG + chr2_4:20228886-20228905 Msa0320010:intron 45.0%
! TATGATGGCTTGTGGTTGCT+AGG + chr2_4:20229165-20229184 Msa0320010:intron 45.0%
! TGATGTGGACTAAACCGTGT+CGG - chr2_4:20229310-20229329 None:intergenic 45.0%
TGGCTGTTACAGATCTGATG+TGG - chr2_4:20229325-20229344 None:intergenic 45.0%
TGGAAAAGACCTGAGTCATC+AGG + chr2_4:20229726-20229745 Msa0320010:intron 45.0%
GGAAAAGACCTGAGTCATCA+GGG + chr2_4:20229727-20229746 Msa0320010:intron 45.0%
GCTTTCTTGGGCTTCATGAA+AGG + chr2_4:20230037-20230056 Msa0320010:CDS 45.0%
CTTGGGCTTCATGAAAGGAA+AGG + chr2_4:20230042-20230061 Msa0320010:CDS 45.0%
TTCTCTCCAAGTTCTCTGAC+TGG + chr2_4:20230161-20230180 Msa0320010:CDS 45.0%
TTGGGTCGCAATATGATGAG+TGG + chr2_4:20230197-20230216 Msa0320010:CDS 45.0%
AGTGGAAAGCTGAGTTCCAT+CGG + chr2_4:20230215-20230234 Msa0320010:CDS 45.0%
!! GTTCCATCGGCTCTACAATT+TGG + chr2_4:20230228-20230247 Msa0320010:CDS 45.0%
TGAAGAAAGCTGGAGGCAAA+TGG + chr2_4:20230267-20230286 Msa0320010:CDS 45.0%
ATTGTGCACTCAAGAACCGT+TGG - chr2_4:20230435-20230454 None:intergenic 45.0%
! CAGAAAGTGTGCCTGAAAAC+AGG + chr2_4:20230650-20230669 Msa0320010:CDS 45.0%
GAGTAAGTAAAGTGGCAGCA+TGG - chr2_4:20230691-20230710 None:intergenic 45.0%
! TGGAGTTTGCTCAAGGCATA+AGG - chr2_4:20230713-20230732 None:intergenic 45.0%
! CTCTTCTTGGAGTTTGCTCA+AGG - chr2_4:20230720-20230739 None:intergenic 45.0%
!! GCATCCTTTCTGGTTGATGA+AGG + chr2_4:20230761-20230780 Msa0320010:CDS 45.0%
!! GAGGAGGTTGCAAAGTGTTT+TGG + chr2_4:20230819-20230838 Msa0320010:CDS 45.0%
!!! AGTGTTTTGGCTTCCTTGTC+AGG + chr2_4:20230832-20230851 Msa0320010:CDS 45.0%
!! TGCCGTCTATTCGAGTTTTC+AGG + chr2_4:20230872-20230891 Msa0320010:CDS 45.0%
GGATCGGTAAATATTGGTCC+GGG - chr2_4:20230952-20230971 None:intergenic 45.0%
CGGATCGGTAAATATTGGTC+CGG - chr2_4:20230953-20230972 None:intergenic 45.0%
GCCATCGGATCGGTAAATAT+TGG - chr2_4:20230958-20230977 None:intergenic 45.0%
ACAAACCAATGCTTCGCCAT+CGG - chr2_4:20230973-20230992 None:intergenic 45.0%
! AAGGCGTTCCTCAGTTTCAA+CGG - chr2_4:20231089-20231108 None:intergenic 45.0%
CTTGGTCACAAGCAACATCA+AGG - chr2_4:20231108-20231127 None:intergenic 45.0%
CACGTGTTAAAACTCTTCCC+AGG + chr2_4:20231143-20231162 Msa0320010:CDS 45.0%
TTTACGCCATGTGATGACCT+GGG - chr2_4:20231163-20231182 None:intergenic 45.0%
ATTTACGCCATGTGATGACC+TGG - chr2_4:20231164-20231183 None:intergenic 45.0%
CCTAAAGCCATGGAATCATG+AGG - chr2_4:20231277-20231296 None:intergenic 45.0%
CCTCATGATTCCATGGCTTT+AGG + chr2_4:20231274-20231293 Msa0320010:CDS 45.0%
!! CTTTAGCTTGCCTAAAGCCA+TGG - chr2_4:20231287-20231306 None:intergenic 45.0%
!! CATGGCTTTAGGCAAGCTAA+AGG + chr2_4:20231285-20231304 Msa0320010:CDS 45.0%
TAGGCAAGCTAAAGGAGAGA+AGG + chr2_4:20231293-20231312 Msa0320010:CDS 45.0%
AGGCAAGCTAAAGGAGAGAA+GGG + chr2_4:20231294-20231313 Msa0320010:CDS 45.0%
TGACTCCAGCTTGACGATGA+TGG - chr2_4:20226151-20226170 None:intergenic 50.0%
! ATCGCGTCGGAATCGTTTTC+CGG - chr2_4:20226192-20226211 None:intergenic 50.0%
!!! CGGTTTTGAAGAGGTGGCTA+TGG - chr2_4:20226224-20226243 None:intergenic 50.0%
TCTTGGTATGGAGTTTGGCC+AGG + chr2_4:20226811-20226830 Msa0320010:intron 50.0%
GAGCCAAGTAAAGTTGGCCA+AGG + chr2_4:20226833-20226852 Msa0320010:intron 50.0%
! AGGGATTTTACTTGCCACCG+CGG + chr2_4:20227579-20227598 Msa0320010:CDS 50.0%
ACAGGCTCGAGTACATTGCA+TGG + chr2_4:20228075-20228094 Msa0320010:CDS 50.0%
CCATGTCATAGGCCTCTACT+CGG - chr2_4:20228166-20228185 None:intergenic 50.0%
AGAGGCCTATGACATGGTGT+TGG + chr2_4:20228169-20228188 Msa0320010:CDS 50.0%
GAGGCCTATGACATGGTGTT+GGG + chr2_4:20228170-20228189 Msa0320010:CDS 50.0%
GCTTTAGTTGCGCCCTTCTA+CGG + chr2_4:20228231-20228250 Msa0320010:CDS 50.0%
CTTTAGTTGCGCCCTTCTAC+GGG + chr2_4:20228232-20228251 Msa0320010:CDS 50.0%
CAGTAGCATGCAATCAGCCA+TGG + chr2_4:20228653-20228672 Msa0320010:intron 50.0%
! AAGAACTCTTTGGGGAGCCA+TGG - chr2_4:20228673-20228692 None:intergenic 50.0%
! TAGTGAGGGTGTGAGTGAAG+GGG - chr2_4:20228752-20228771 None:intergenic 50.0%
TTGTGGTTGCTAGGACTAGG+AGG + chr2_4:20229174-20229193 Msa0320010:intron 50.0%
GTTGCTAGGACTAGGAGGAA+TGG + chr2_4:20229179-20229198 Msa0320010:intron 50.0%
! GGAATGGTGCCGGATTTCAA+AGG + chr2_4:20229195-20229214 Msa0320010:intron 50.0%
GAATCTAGTAGGCCTTCCCT+AGG + chr2_4:20229865-20229884 Msa0320010:intron 50.0%
AGAAAGCTGGAGGCAAATGG+TGG + chr2_4:20230270-20230289 Msa0320010:CDS 50.0%
! TCTTTTGCTTTGCTCCGGCT+CGG - chr2_4:20230616-20230635 None:intergenic 50.0%
GTGGCAGCATGGGATTCTAT+AGG - chr2_4:20230680-20230699 None:intergenic 50.0%
! GTGCTGCAACTAGCTCTTCT+TGG - chr2_4:20230733-20230752 None:intergenic 50.0%
AGACACCATTCACAGACCGA+TGG + chr2_4:20230797-20230816 Msa0320010:CDS 50.0%
CACTTTGCAACCTCCTCCAT+CGG - chr2_4:20230816-20230835 None:intergenic 50.0%
ACTCTTCCCAGGTCATCACA+TGG + chr2_4:20231154-20231173 Msa0320010:CDS 50.0%
GGATTCATTGATCCTGCCAG+AGG + chr2_4:20231207-20231226 Msa0320010:CDS 50.0%
CAGTATCTTCTACCTCTGGC+AGG - chr2_4:20231222-20231241 None:intergenic 50.0%
AAGGAGAGAAGGGCAAGAGA+TGG + chr2_4:20231304-20231323 Msa0320010:CDS 50.0%
CAGCTCCATCATCGTCAAGC+TGG + chr2_4:20226143-20226162 Msa0320010:five_prime_UTR 55.0%
ACACGCAGCAGTGAACTTCC+CGG + chr2_4:20226170-20226189 Msa0320010:five_prime_UTR 55.0%
! TCGCGTCGGAATCGTTTTCC+GGG - chr2_4:20226191-20226210 None:intergenic 55.0%
GGCCAGGAGCCAAGTAAAGT+TGG + chr2_4:20226827-20226846 Msa0320010:intron 55.0%
GGCCAACTTTACTTGGCTCC+TGG - chr2_4:20226832-20226851 None:intergenic 55.0%
ATTAGACGACACCGCACTCG+AGG + chr2_4:20227525-20227544 Msa0320010:CDS 55.0%
TTAGACGACACCGCACTCGA+GGG + chr2_4:20227526-20227545 Msa0320010:CDS 55.0%
ACCGCACTCGAGGGAAAGAT+GGG + chr2_4:20227535-20227554 Msa0320010:CDS 55.0%
ACTCGAGGGAAAGATGGGGT+TGG + chr2_4:20227540-20227559 Msa0320010:CDS 55.0%
TTGGCCGAGGAGTAACAAGG+AGG + chr2_4:20227559-20227578 Msa0320010:CDS 55.0%
TGGCCGAGGAGTAACAAGGA+GGG + chr2_4:20227560-20227579 Msa0320010:CDS 55.0%
! GATTTTACTTGCCACCGCGG+TGG + chr2_4:20227582-20227601 Msa0320010:CDS 55.0%
CCTCCTCCCCCATCTTCAAA+AGG - chr2_4:20227624-20227643 None:intergenic 55.0%
!! CCTTTTGAAGATGGGGGAGG+AGG + chr2_4:20227621-20227640 Msa0320010:CDS 55.0%
TGAAGATGGGGGAGGAGGAA+AGG + chr2_4:20227626-20227645 Msa0320010:CDS 55.0%
GTCCCTGAATGGCGTGTTAC+TGG + chr2_4:20227723-20227742 Msa0320010:CDS 55.0%
GTCATAGGCCTCTACTCGGT+AGG - chr2_4:20228162-20228181 None:intergenic 55.0%
CCGAGTAGAGGCCTATGACA+TGG + chr2_4:20228163-20228182 Msa0320010:CDS 55.0%
TCTTCCTCTGCCACCACACT+AGG + chr2_4:20228603-20228622 Msa0320010:intron 55.0%
AGATGAAGGGCCTAGTGTGG+TGG - chr2_4:20228616-20228635 None:intergenic 55.0%
! AGTGAGGGTGTGAGTGAAGG+GGG - chr2_4:20228751-20228770 None:intergenic 55.0%
GGCTTGTGGTTGCTAGGACT+AGG + chr2_4:20229171-20229190 Msa0320010:intron 55.0%
AGGACTAGGAGGAATGGTGC+CGG + chr2_4:20229185-20229204 Msa0320010:intron 55.0%
! TGGACTAAACCGTGTCGGCA+TGG - chr2_4:20229305-20229324 None:intergenic 55.0%
ACCTGAGTCATCAGGGCATG+TGG + chr2_4:20229734-20229753 Msa0320010:intron 55.0%
ACCACATGCCCTGATGACTC+AGG - chr2_4:20229738-20229757 None:intergenic 55.0%
! GGACTCGGTCTGACATGTAC+TGG - chr2_4:20230398-20230417 None:intergenic 55.0%
CACCATTCACAGACCGATGG+AGG + chr2_4:20230800-20230819 Msa0320010:CDS 55.0%
CTCCTCCATCGGTCTGTGAA+TGG - chr2_4:20230805-20230824 None:intergenic 55.0%
CATTCACAGACCGATGGAGG+AGG + chr2_4:20230803-20230822 Msa0320010:CDS 55.0%
CAGCTGATGTGCTCCTGACA+AGG - chr2_4:20230848-20230867 None:intergenic 55.0%
CCAATGCTTCGCCATCGGAT+CGG - chr2_4:20230968-20230987 None:intergenic 55.0%
CTAGCAGGGATCAGCCTGAA+AGG + chr2_4:20231020-20231039 Msa0320010:CDS 55.0%
ATGGCGGCCGTAAATCGCGT+CGG - chr2_4:20226205-20226224 None:intergenic 60.0%
GGATGACATTGGCACCGTCG+AGG + chr2_4:20227371-20227390 Msa0320010:CDS 60.0%
CACCGCACTCGAGGGAAAGA+TGG + chr2_4:20227534-20227553 Msa0320010:CDS 60.0%
CCCCATCTTTCCCTCGAGTG+CGG - chr2_4:20227539-20227558 None:intergenic 60.0%
CCGCACTCGAGGGAAAGATG+GGG + chr2_4:20227536-20227555 Msa0320010:CDS 60.0%
!! GGGTTGGCCGAGGAGTAACA+AGG + chr2_4:20227556-20227575 Msa0320010:CDS 60.0%
TTTGGGGAAATCCACCGCGG+TGG - chr2_4:20227596-20227615 None:intergenic 60.0%
AGGGTGTGAGTGAAGGGGGT+TGG - chr2_4:20228747-20228766 None:intergenic 60.0%
ATGGGGAAGCCATGCCGACA+CGG + chr2_4:20229293-20229312 Msa0320010:intron 60.0%
CCGATCCGATGGCGAAGCAT+TGG + chr2_4:20230965-20230984 Msa0320010:CDS 60.0%
!! GGGAAAGATGGGGTTGGCCG+AGG + chr2_4:20227546-20227565 Msa0320010:CDS 65.0%
! GGGGAGGAGGAAAGGCGCAA+AGG + chr2_4:20227634-20227653 Msa0320010:CDS 65.0%
AGGGCCTAGTGTGGTGGCAG+AGG - chr2_4:20228610-20228629 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 20226132 20231639 20226132 ID=Msa0320010;Name=Msa0320010
chr2_4 mRNA 20226132 20231639 20226132 ID=Msa0320010-mRNA-1;Parent=Msa0320010;Name=Msa0320010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=224|1|1|1|0.66|0.75|4|186|762
chr2_4 exon 20226132 20226309 20226132 ID=Msa0320010-mRNA-1:exon:7451;Parent=Msa0320010-mRNA-1
chr2_4 exon 20227266 20228289 20227266 ID=Msa0320010-mRNA-1:exon:7452;Parent=Msa0320010-mRNA-1
chr2_4 exon 20230037 20230480 20230037 ID=Msa0320010-mRNA-1:exon:7453;Parent=Msa0320010-mRNA-1
chr2_4 exon 20230587 20231639 20230587 ID=Msa0320010-mRNA-1:exon:7454;Parent=Msa0320010-mRNA-1
chr2_4 five_prime_UTR 20226132 20226309 20226132 ID=Msa0320010-mRNA-1:five_prime_utr;Parent=Msa0320010-mRNA-1
chr2_4 five_prime_UTR 20227266 20227311 20227266 ID=Msa0320010-mRNA-1:five_prime_utr;Parent=Msa0320010-mRNA-1
chr2_4 CDS 20227312 20228289 20227312 ID=Msa0320010-mRNA-1:cds;Parent=Msa0320010-mRNA-1
chr2_4 CDS 20230037 20230480 20230037 ID=Msa0320010-mRNA-1:cds;Parent=Msa0320010-mRNA-1
chr2_4 CDS 20230587 20231453 20230587 ID=Msa0320010-mRNA-1:cds;Parent=Msa0320010-mRNA-1
chr2_4 three_prime_UTR 20231454 20231639 20231454 ID=Msa0320010-mRNA-1:three_prime_utr;Parent=Msa0320010-mRNA-1
Gene Sequence

>Msa0320010

ATGTCAGAAGGAGCCAGTTTTGTGTTAGAATCATCCGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACCGTCGAGGAAACACCAGAAGAAACAATTCTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCTATTAGACGACACCGCACTCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACAAGGAGGGATTTTACTTGCCACCGCGGTGGATTTCCCCAAAATAAACCTTTTGAAGATGGGGGAGGAGGAAAGGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAAGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATTCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCAATCACACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGTTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGGTGTCTTCCTTTTACTGAGATAGATGTGAGAAACTTGTTGCAGTCTTTTAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGATAATAATAACAGGCTCGAGTACATTGCATGGTCCTACGGCTCATCAATTCAATCATATGAGGTATTTGGTGATGCTGTGGTTTTTGATACAACCTACCGAGTAGAGGCCTATGACATGGTGTTGGGAATTTGGCTTGGATTGGACAATAATGGAGTGATATGTTGCTTTAGTTGCGCCCTTCTACGGGATGAAAGTATGCCGTCTTTTTCATGGGCTTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATACTGACTGATCATAACACATGGCTGAAAGAAGCTATTGCTGTTGAAATGCCCGAAAGTAAACATGCCTTTTGTATATGGCATATTCTCTCCAAGTTCTCTGACTGGTTTTATTTACTTCTTGGGTCGCAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTTGAAGAAAGCTGGAGGCAAATGGTGGATAAATATGGACTTCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTCTGGGCTTTACCATTTTTGAGGCGATATTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAACGTTTTCATCCAACGGTTCTTGAGTGCACAATCTCAACCAGAACGTTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTGTGCCTGAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTTTACTTACTCCTTATGCCTTGAGCAAACTCCAAGAAGAGCTAGTTGCAGCACCTCAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTTCAGGTTAGACACCATTCACAGACCGATGGAGGAGGTTGCAAAGTGTTTTGGCTTCCTTGTCAGGAGCACATCAGCTGCAGCTGCCGTCTATTCGAGTTTTCAGGCATCTTATGTAAACATGTGCTACGCGTCATGTCAACTAATAACTGTTTTCACATCCCGGACCAATATTTACCGATCCGATGGCGAAGCATTGGTTTGTCTTCTTTTAACCATTTTCATGGTGCAACTAGCAGGGATCAGCCTGAAAGGATACAATATTTGGAATCTTTGGTTTCAACACTTCTAATGGAATCCGTTGAAACTGAGGAACGCCTTGATGTTGCTTGTGACCAAGTTTCAATGGTGCTATCACGTGTTAAAACTCTTCCCAGGTCATCACATGGCGTAAATGATATTGCATTTAGTTATGCATCGGATTCATTGATCCTGCCAGAGGTAGAAGATACTGATGAAATGATTCATGGTTTTACAATTGCAAATCCTCATGATTCCATGGCTTTAGGCAAGCTAAAGGAGAGAAGGGCAAGAGATGGAGTTGATCTTAGTAGAAAACGTAGGCAGTTCTCATCACCATTATGTGCACAATATGGACATGATGGATCTGATTGCTCAATAATGGCTGATGATAATATGAGTGAAGATGCATTAGGGTATATGTAG
Protein sequence

>Msa0320010

MSEGASFVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPFEDGGGGKAQRNRKSSRCGCQAYMRIVKKADFDVPEWRVTGFRNIHNHELLKSNEVRLLQSHCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDNNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMVLGIWLGLDNNGVICCFSCALLRDESMPSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWFYLLLGSQYDEWKAEFHRLYNLEMVEDFEESWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATLLTPYALSKLQEELVAAPQYASFLVDEGCFQVRHHSQTDGGGCKVFWLPCQEHISCSCRLFEFSGILCKHVLRVMSTNNCFHIPDQYLPIRWRSIGLSSFNHFHGATSRDQPERIQYLESLVSTLLMESVETEERLDVACDQVSMVLSRVKTLPRSSHGVNDIAFSYASDSLILPEVEDTDEMIHGFTIANPHDSMALGKLKERRARDGVDLSRKRRQFSSPLCAQYGHDGSDCSIMADDNMSEDALGYM*