Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321030 | XP_003594864.1 | 91.139 | 158 | 14 | 0 | 1 | 158 | 1 | 158 | 2.26e-89 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321030 | sp|Q9FJK3|AGL80_ARATH | 41.667 | 156 | 87 | 2 | 1 | 154 | 1 | 154 | 6.97e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0321030 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321030 | MtrunA17_Chr2g0296861 | 91.139 | 158 | 14 | 0 | 1 | 158 | 1 | 158 | 2.08e-93 | 267 |
| Msa0321030 | MtrunA17_Chr3g0107381 | 46.203 | 158 | 85 | 0 | 1 | 158 | 1 | 158 | 2.13e-46 | 150 |
| Msa0321030 | MtrunA17_Chr3g0107461 | 49.351 | 154 | 77 | 1 | 1 | 153 | 1 | 154 | 4.64e-46 | 147 |
| Msa0321030 | MtrunA17_Chr3g0110131 | 44.156 | 154 | 86 | 0 | 1 | 154 | 1 | 154 | 4.13e-38 | 130 |
| Msa0321030 | MtrunA17_Chr4g0014321 | 37.662 | 154 | 95 | 1 | 1 | 153 | 1 | 154 | 6.75e-35 | 121 |
| Msa0321030 | MtrunA17_Chr3g0105791 | 47.541 | 122 | 63 | 1 | 30 | 150 | 2 | 123 | 1.07e-33 | 115 |
| Msa0321030 | MtrunA17_Chr4g0031421 | 46.400 | 125 | 66 | 1 | 30 | 153 | 2 | 126 | 3.21e-33 | 114 |
| Msa0321030 | MtrunA17_Chr2g0283941 | 38.750 | 160 | 93 | 2 | 1 | 157 | 1 | 158 | 5.38e-33 | 117 |
| Msa0321030 | MtrunA17_Chr3g0107331 | 39.597 | 149 | 90 | 0 | 4 | 152 | 3 | 151 | 6.29e-33 | 114 |
| Msa0321030 | MtrunA17_Chr4g0013041 | 35.849 | 159 | 99 | 2 | 1 | 158 | 1 | 157 | 5.87e-32 | 113 |
| Msa0321030 | MtrunA17_Chr5g0432691 | 33.333 | 153 | 102 | 0 | 1 | 153 | 1 | 153 | 1.15e-30 | 108 |
| Msa0321030 | MtrunA17_Chr4g0014031 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 2.11e-29 | 107 |
| Msa0321030 | MtrunA17_Chr8g0351751 | 37.975 | 158 | 95 | 2 | 1 | 155 | 1 | 158 | 2.40e-29 | 107 |
| Msa0321030 | MtrunA17_Chr3g0107361 | 36.486 | 148 | 94 | 0 | 6 | 153 | 5 | 152 | 3.57e-29 | 104 |
| Msa0321030 | MtrunA17_Chr3g0106421 | 42.308 | 130 | 74 | 1 | 30 | 158 | 2 | 131 | 9.96e-29 | 105 |
| Msa0321030 | MtrunA17_Chr1g0197461 | 33.333 | 153 | 101 | 1 | 6 | 158 | 5 | 156 | 1.41e-28 | 103 |
| Msa0321030 | MtrunA17_Chr3g0107351 | 35.135 | 148 | 96 | 0 | 6 | 153 | 5 | 152 | 2.94e-28 | 102 |
| Msa0321030 | MtrunA17_Chr5g0420351 | 34.194 | 155 | 101 | 1 | 1 | 155 | 1 | 154 | 3.88e-28 | 102 |
| Msa0321030 | MtrunA17_Chr4g0014121 | 36.943 | 157 | 98 | 1 | 1 | 156 | 29 | 185 | 3.34e-27 | 100 |
| Msa0321030 | MtrunA17_Chr1g0188681 | 33.987 | 153 | 100 | 1 | 1 | 153 | 1 | 152 | 4.30e-27 | 99.4 |
| Msa0321030 | MtrunA17_Chr3g0107341 | 35.417 | 144 | 93 | 0 | 6 | 149 | 5 | 148 | 2.21e-26 | 97.8 |
| Msa0321030 | MtrunA17_Chr1g0197261 | 30.968 | 155 | 106 | 1 | 1 | 155 | 1 | 154 | 9.26e-24 | 90.9 |
| Msa0321030 | MtrunA17_Chr2g0296831 | 36.752 | 117 | 74 | 0 | 1 | 117 | 1 | 117 | 1.84e-23 | 89.0 |
| Msa0321030 | MtrunA17_Chr4g0014131 | 35.032 | 157 | 101 | 1 | 1 | 156 | 1 | 157 | 8.50e-23 | 90.1 |
| Msa0321030 | MtrunA17_Chr3g0106501 | 38.583 | 127 | 77 | 1 | 30 | 155 | 2 | 128 | 4.20e-22 | 86.7 |
| Msa0321030 | MtrunA17_Chr4g0012761 | 35.897 | 156 | 97 | 3 | 1 | 155 | 1 | 154 | 4.58e-22 | 86.7 |
| Msa0321030 | MtrunA17_Chr1g0197321 | 31.210 | 157 | 104 | 3 | 1 | 155 | 1 | 155 | 9.25e-22 | 85.9 |
| Msa0321030 | MtrunA17_Chr7g0218151 | 32.903 | 155 | 103 | 1 | 1 | 155 | 1 | 154 | 1.26e-21 | 85.5 |
| Msa0321030 | MtrunA17_Chr1g0193311 | 34.194 | 155 | 101 | 1 | 1 | 155 | 1 | 154 | 2.27e-21 | 84.7 |
| Msa0321030 | MtrunA17_Chr1g0188661 | 30.323 | 155 | 107 | 1 | 1 | 155 | 1 | 154 | 4.85e-20 | 81.3 |
| Msa0321030 | MtrunA17_Chr1g0188651 | 36.129 | 155 | 92 | 4 | 1 | 153 | 1 | 150 | 4.20e-18 | 76.3 |
| Msa0321030 | MtrunA17_Chr4g0008701 | 28.814 | 118 | 80 | 1 | 11 | 128 | 14 | 127 | 4.10e-11 | 60.1 |
| Msa0321030 | MtrunA17_Chr7g0267601 | 27.273 | 121 | 78 | 2 | 11 | 128 | 14 | 127 | 5.27e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321030 | AT5G48670.1 | 41.667 | 156 | 87 | 2 | 1 | 154 | 1 | 154 | 7.08e-32 | 116 |
| Msa0321030 | AT3G05860.2 | 36.913 | 149 | 94 | 0 | 1 | 149 | 1 | 149 | 2.57e-29 | 107 |
| Msa0321030 | AT1G65300.1 | 37.086 | 151 | 95 | 0 | 4 | 154 | 3 | 153 | 3.13e-29 | 108 |
| Msa0321030 | AT1G65330.1 | 39.333 | 150 | 89 | 2 | 6 | 154 | 5 | 153 | 3.55e-29 | 108 |
| Msa0321030 | AT3G05860.3 | 39.103 | 156 | 81 | 3 | 1 | 149 | 1 | 149 | 1.37e-28 | 106 |
| Msa0321030 | AT3G05860.1 | 39.103 | 156 | 81 | 3 | 1 | 149 | 1 | 149 | 1.52e-28 | 106 |
| Msa0321030 | AT1G31630.1 | 33.333 | 153 | 91 | 3 | 6 | 153 | 5 | 151 | 7.02e-24 | 95.5 |
| Msa0321030 | AT1G31640.1 | 35.915 | 142 | 90 | 1 | 11 | 152 | 10 | 150 | 2.05e-23 | 95.5 |
| Msa0321030 | AT5G27810.1 | 43.182 | 88 | 50 | 0 | 30 | 117 | 2 | 89 | 7.67e-23 | 87.8 |
| Msa0321030 | AT5G26650.1 | 32.237 | 152 | 103 | 0 | 4 | 155 | 2 | 153 | 1.74e-22 | 92.0 |
| Msa0321030 | AT5G27960.1 | 31.579 | 152 | 104 | 0 | 4 | 155 | 2 | 153 | 1.39e-21 | 89.0 |
| Msa0321030 | AT1G22590.2 | 36.111 | 108 | 69 | 0 | 11 | 118 | 11 | 118 | 5.23e-21 | 84.3 |
| Msa0321030 | AT2G28700.1 | 32.680 | 153 | 95 | 3 | 1 | 149 | 1 | 149 | 6.04e-20 | 84.7 |
| Msa0321030 | AT2G40210.1 | 32.479 | 117 | 79 | 0 | 1 | 117 | 1 | 117 | 9.62e-15 | 70.5 |
| Msa0321030 | AT5G26580.1 | 28.571 | 154 | 96 | 3 | 1 | 154 | 1 | 140 | 2.97e-14 | 69.3 |
| Msa0321030 | AT5G26630.1 | 26.623 | 154 | 113 | 0 | 1 | 154 | 1 | 154 | 3.35e-14 | 67.8 |
| Msa0321030 | AT5G06500.1 | 28.182 | 110 | 75 | 1 | 1 | 110 | 1 | 106 | 4.39e-13 | 65.1 |
Find 27 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATCTATCATTGCTTAT+TGG | 0.201999 | 2_4:-22027895 | Msa0321030:CDS |
| CTTCTCTTTCGATTTCATTA+TGG | 0.221424 | 2_4:+22028023 | None:intergenic |
| ATTCATACGGGTGAATTTGA+TGG | 0.333961 | 2_4:-22027940 | Msa0321030:CDS |
| AGATGGTGTTGGACAAGTTT+AGG | 0.350542 | 2_4:-22028107 | Msa0321030:CDS |
| GTTTAGGAGCTTTCCTGAAT+CGG | 0.417309 | 2_4:-22028091 | Msa0321030:CDS |
| TAAACTTGTCCAACACCATC+TGG | 0.418271 | 2_4:+22028109 | None:intergenic |
| AGTGAAATCACCACACTTTG+TGG | 0.451943 | 2_4:-22028204 | Msa0321030:CDS |
| GGAAGACAACATTCAACAAA+AGG | 0.464060 | 2_4:-22028636 | Msa0321030:CDS |
| ATCTATGATGAAAACAATGA+TGG | 0.489972 | 2_4:-22028162 | Msa0321030:CDS |
| ACTTGGTGAATTCATTCATA+CGG | 0.496749 | 2_4:-22027953 | Msa0321030:CDS |
| AGAGAAGTTGAAGAAACAAA+AGG | 0.500916 | 2_4:-22028007 | Msa0321030:CDS |
| CCTGAATCGGAACAAAGAAA+AGG | 0.516491 | 2_4:-22028078 | Msa0321030:CDS |
| GGAACAAAGAAAAGGAAAGC+TGG | 0.520124 | 2_4:-22028070 | Msa0321030:CDS |
| AGTTGAAGAAACAAAAGGAC+AGG | 0.532305 | 2_4:-22028002 | Msa0321030:CDS |
| AAAAGGAAAGCTGGATCATG+AGG | 0.532487 | 2_4:-22028061 | Msa0321030:CDS |
| CTTGGTGAATTCATTCATAC+GGG | 0.535817 | 2_4:-22027952 | Msa0321030:CDS |
| AAGAAAATGAATGATCTACT+TGG | 0.551967 | 2_4:-22027970 | Msa0321030:CDS |
| ACGGTTTATCCATCAAAAGA+AGG | 0.566324 | 2_4:-22028135 | Msa0321030:CDS |
| ACATAACTGATGACTTGAAG+AGG | 0.573872 | 2_4:-22028657 | Msa0321030:CDS |
| AGAAGGAGTCCAGATGGTGT+TGG | 0.590630 | 2_4:-22028118 | Msa0321030:CDS |
| ACCGAAAAGAAGTCGATGAG+AGG | 0.615793 | 2_4:-22027867 | Msa0321030:CDS |
| ATCAAAAGAAGGAGTCCAGA+TGG | 0.615817 | 2_4:-22028124 | Msa0321030:CDS |
| TGCATCAATTCCACAAAGTG+TGG | 0.616904 | 2_4:+22028194 | None:intergenic |
| TGAAAACAATGATGGAGCAA+CGG | 0.627126 | 2_4:-22028154 | Msa0321030:CDS |
| ACATTCAACAAAAGGAAGCA+TGG | 0.630577 | 2_4:-22028628 | Msa0321030:intron |
| AAAGGAAAGCTGGATCATGA+GGG | 0.661580 | 2_4:-22028060 | Msa0321030:CDS |
| CTTTGTGGAATTGATGCATG+TGG | 0.684212 | 2_4:-22028189 | Msa0321030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAACAATAATTTCAA+AGG | + | chr2_4:22028196-22028215 | None:intergenic | 15.0% |
| !! | GAAAATAACAATAATTTCAA+AGG | + | chr2_4:22028196-22028215 | None:intergenic | 15.0% |
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_4:22027946-22027965 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_4:22028034-22028053 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_4:22028070-22028089 | None:intergenic | 20.0% |
| !! | ACATAACTGATATGTTATTA+TGG | + | chr2_4:22028170-22028189 | None:intergenic | 20.0% |
| !!! | ACAATATTTTAAGATCATGT+CGG | - | chr2_4:22028216-22028235 | Msa0321030:CDS | 20.0% |
| !! | AGTGTTCTTTATAGAAATAA+AGG | + | chr2_4:22027946-22027965 | None:intergenic | 20.0% |
| !!! | TTTCATATTTTTAGTATCCA+TGG | + | chr2_4:22028034-22028053 | None:intergenic | 20.0% |
| !! | TCATATTGATAAATTCCTAA+TGG | + | chr2_4:22028070-22028089 | None:intergenic | 20.0% |
| !! | ACATAACTGATATGTTATTA+TGG | + | chr2_4:22028170-22028189 | None:intergenic | 20.0% |
| !!! | ACAATATTTTAAGATCATGT+CGG | - | chr2_4:22028216-22028235 | Msa0321030:CDS | 20.0% |
| !!! | GTTTTTTTTTATCACTACCA+TGG | - | chr2_4:22028014-22028033 | Msa0321030:CDS | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_4:22028369-22028388 | Msa0321030:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_4:22028556-22028575 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_4:22028561-22028580 | Msa0321030:intron | 25.0% |
| !!! | GTTTTTTTTTATCACTACCA+TGG | - | chr2_4:22028014-22028033 | Msa0321030:CDS | 25.0% |
| ! | ATCTATGATGAAAACAATGA+TGG | - | chr2_4:22028369-22028388 | Msa0321030:intron | 25.0% |
| !! | ATCATTCATTTTCTTCTTCT+TGG | + | chr2_4:22028556-22028575 | None:intergenic | 25.0% |
| ! | AAGAAAATGAATGATCTACT+TGG | - | chr2_4:22028561-22028580 | Msa0321030:intron | 25.0% |
| !! | GTTTTGTTGTGTTTTTCAAC+AGG | - | chr2_4:22028288-22028307 | Msa0321030:intron | 30.0% |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_4:22028511-22028530 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_4:22028524-22028543 | Msa0321030:intron | 30.0% | |
| ! | ACTTGGTGAATTCATTCATA+CGG | - | chr2_4:22028578-22028597 | Msa0321030:intron | 30.0% |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_4:22028636-22028655 | Msa0321030:CDS | 30.0% | |
| !! | GTTTTGTTGTGTTTTTCAAC+AGG | - | chr2_4:22028288-22028307 | Msa0321030:intron | 30.0% |
| CTTCTCTTTCGATTTCATTA+TGG | + | chr2_4:22028511-22028530 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGAAACAAA+AGG | - | chr2_4:22028524-22028543 | Msa0321030:intron | 30.0% | |
| ! | ACTTGGTGAATTCATTCATA+CGG | - | chr2_4:22028578-22028597 | Msa0321030:intron | 30.0% |
| GAAGATCTATCATTGCTTAT+TGG | - | chr2_4:22028636-22028655 | Msa0321030:CDS | 30.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_4:22027874-22027893 | Msa0321030:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_4:22027895-22027914 | Msa0321030:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_4:22027903-22027922 | Msa0321030:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_4:22028052-22028071 | Msa0321030:CDS | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_4:22028377-22028396 | Msa0321030:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_4:22028396-22028415 | Msa0321030:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_4:22028529-22028548 | Msa0321030:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+GGG | - | chr2_4:22028579-22028598 | Msa0321030:intron | 35.0% | |
| ATTCATACGGGTGAATTTGA+TGG | - | chr2_4:22028591-22028610 | Msa0321030:intron | 35.0% | |
| ACATAACTGATGACTTGAAG+AGG | - | chr2_4:22027874-22027893 | Msa0321030:CDS | 35.0% | |
| GGAAGACAACATTCAACAAA+AGG | - | chr2_4:22027895-22027914 | Msa0321030:CDS | 35.0% | |
| ACATTCAACAAAAGGAAGCA+TGG | - | chr2_4:22027903-22027922 | Msa0321030:CDS | 35.0% | |
| AAGTTGACTGCATAACCATT+AGG | - | chr2_4:22028052-22028071 | Msa0321030:CDS | 35.0% | |
| ! | TGAAAACAATGATGGAGCAA+CGG | - | chr2_4:22028377-22028396 | Msa0321030:intron | 35.0% |
| ACGGTTTATCCATCAAAAGA+AGG | - | chr2_4:22028396-22028415 | Msa0321030:intron | 35.0% | |
| AGTTGAAGAAACAAAAGGAC+AGG | - | chr2_4:22028529-22028548 | Msa0321030:intron | 35.0% | |
| CTTGGTGAATTCATTCATAC+GGG | - | chr2_4:22028579-22028598 | Msa0321030:intron | 35.0% | |
| ATTCATACGGGTGAATTTGA+TGG | - | chr2_4:22028591-22028610 | Msa0321030:intron | 35.0% | |
| CATTTCTCTCAACTCTCTCA+CGG | - | chr2_4:22028265-22028284 | Msa0321030:intron | 40.0% | |
| ATTTCTCTCAACTCTCTCAC+GGG | - | chr2_4:22028266-22028285 | Msa0321030:intron | 40.0% | |
| AGTGAAATCACCACACTTTG+TGG | - | chr2_4:22028327-22028346 | Msa0321030:intron | 40.0% | |
| TGCATCAATTCCACAAAGTG+TGG | + | chr2_4:22028340-22028359 | None:intergenic | 40.0% | |
| CTTTGTGGAATTGATGCATG+TGG | - | chr2_4:22028342-22028361 | Msa0321030:intron | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_4:22028408-22028427 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_4:22028407-22028426 | Msa0321030:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_4:22028425-22028444 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_4:22028424-22028443 | Msa0321030:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_4:22028440-22028459 | Msa0321030:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_4:22028456-22028475 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_4:22028453-22028472 | Msa0321030:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_4:22028461-22028480 | Msa0321030:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_4:22028470-22028489 | Msa0321030:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_4:22028471-22028490 | Msa0321030:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_4:22028668-22028687 | None:intergenic | 40.0% |
| CATTTCTCTCAACTCTCTCA+CGG | - | chr2_4:22028265-22028284 | Msa0321030:intron | 40.0% | |
| ATTTCTCTCAACTCTCTCAC+GGG | - | chr2_4:22028266-22028285 | Msa0321030:intron | 40.0% | |
| AGTGAAATCACCACACTTTG+TGG | - | chr2_4:22028327-22028346 | Msa0321030:intron | 40.0% | |
| TGCATCAATTCCACAAAGTG+TGG | + | chr2_4:22028340-22028359 | None:intergenic | 40.0% | |
| CTTTGTGGAATTGATGCATG+TGG | - | chr2_4:22028342-22028361 | Msa0321030:intron | 40.0% | |
| ! | ATCTGGACTCCTTCTTTTGA+TGG | + | chr2_4:22028408-22028427 | None:intergenic | 40.0% |
| ATCAAAAGAAGGAGTCCAGA+TGG | - | chr2_4:22028407-22028426 | Msa0321030:intron | 40.0% | |
| TAAACTTGTCCAACACCATC+TGG | + | chr2_4:22028425-22028444 | None:intergenic | 40.0% | |
| ! | AGATGGTGTTGGACAAGTTT+AGG | - | chr2_4:22028424-22028443 | Msa0321030:intron | 40.0% |
| GTTTAGGAGCTTTCCTGAAT+CGG | - | chr2_4:22028440-22028459 | Msa0321030:intron | 40.0% | |
| ! | CCTTTTCTTTGTTCCGATTC+AGG | + | chr2_4:22028456-22028475 | None:intergenic | 40.0% |
| CCTGAATCGGAACAAAGAAA+AGG | - | chr2_4:22028453-22028472 | Msa0321030:intron | 40.0% | |
| GGAACAAAGAAAAGGAAAGC+TGG | - | chr2_4:22028461-22028480 | Msa0321030:intron | 40.0% | |
| AAAAGGAAAGCTGGATCATG+AGG | - | chr2_4:22028470-22028489 | Msa0321030:intron | 40.0% | |
| AAAGGAAAGCTGGATCATGA+GGG | - | chr2_4:22028471-22028490 | Msa0321030:intron | 40.0% | |
| !!! | TCCTCTCATCGACTTCTTTT+CGG | + | chr2_4:22028668-22028687 | None:intergenic | 40.0% |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_4:22028664-22028683 | Msa0321030:CDS | 45.0% | |
| ACCGAAAAGAAGTCGATGAG+AGG | - | chr2_4:22028664-22028683 | Msa0321030:CDS | 45.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_4:22028413-22028432 | Msa0321030:intron | 50.0% | |
| AGAAGGAGTCCAGATGGTGT+TGG | - | chr2_4:22028413-22028432 | Msa0321030:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 22027846 | 22028707 | 22027846 | ID=Msa0321030;Name=Msa0321030 |
| chr2_4 | mRNA | 22027846 | 22028707 | 22027846 | ID=Msa0321030-mRNA-1;Parent=Msa0321030;Name=Msa0321030-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|158 |
| chr2_4 | exon | 22028629 | 22028707 | 22028629 | ID=Msa0321030-mRNA-1:exon:8084;Parent=Msa0321030-mRNA-1 |
| chr2_4 | exon | 22027846 | 22028243 | 22027846 | ID=Msa0321030-mRNA-1:exon:8083;Parent=Msa0321030-mRNA-1 |
| chr2_4 | CDS | 22028629 | 22028707 | 22028629 | ID=Msa0321030-mRNA-1:cds;Parent=Msa0321030-mRNA-1 |
| chr2_4 | CDS | 22027846 | 22028243 | 22027846 | ID=Msa0321030-mRNA-1:cds;Parent=Msa0321030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
