Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322610 | XP_013463493.1 | 99.209 | 253 | 2 | 0 | 1 | 253 | 1 | 253 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322610 | sp|Q5XEM9|ALFL5_ARATH | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.60e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0322610 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322610 | MtrunA17_Chr2g0300241 | 99.209 | 253 | 2 | 0 | 1 | 253 | 1 | 253 | 0.0 | 519 |
| Msa0322610 | MtrunA17_Chr8g0343441 | 74.016 | 254 | 56 | 5 | 8 | 253 | 5 | 256 | 4.06e-117 | 335 |
| Msa0322610 | MtrunA17_Chr1g0150821 | 72.901 | 262 | 53 | 3 | 7 | 253 | 5 | 263 | 6.10e-113 | 325 |
| Msa0322610 | MtrunA17_Chr2g0329821 | 72.177 | 248 | 58 | 5 | 13 | 252 | 6 | 250 | 1.08e-106 | 308 |
| Msa0322610 | MtrunA17_Chr4g0076771 | 68.548 | 248 | 68 | 6 | 12 | 252 | 10 | 254 | 1.27e-105 | 306 |
| Msa0322610 | MtrunA17_Chr4g0006381 | 59.231 | 260 | 81 | 6 | 1 | 253 | 1 | 242 | 2.35e-89 | 264 |
| Msa0322610 | MtrunA17_Chr7g0242511 | 57.647 | 255 | 93 | 6 | 1 | 253 | 1 | 242 | 2.25e-84 | 251 |
| Msa0322610 | MtrunA17_Chr8g0366371 | 90.000 | 80 | 8 | 0 | 133 | 212 | 2 | 81 | 1.23e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322610 | AT5G20510.1 | 68.702 | 262 | 69 | 3 | 3 | 253 | 1 | 260 | 5.70e-119 | 340 |
| Msa0322610 | AT3G42790.1 | 68.775 | 253 | 72 | 4 | 3 | 252 | 1 | 249 | 1.61e-110 | 318 |
| Msa0322610 | AT2G02470.1 | 69.444 | 252 | 63 | 6 | 12 | 253 | 9 | 256 | 4.66e-107 | 310 |
| Msa0322610 | AT2G02470.2 | 69.758 | 248 | 60 | 6 | 12 | 253 | 9 | 247 | 4.03e-105 | 305 |
| Msa0322610 | AT1G14510.1 | 70.082 | 244 | 64 | 5 | 12 | 250 | 9 | 248 | 1.37e-101 | 296 |
| Msa0322610 | AT5G26210.1 | 71.542 | 253 | 63 | 2 | 7 | 252 | 4 | 254 | 1.68e-100 | 293 |
| Msa0322610 | AT5G20510.2 | 67.890 | 218 | 57 | 3 | 47 | 253 | 4 | 219 | 5.29e-92 | 270 |
| Msa0322610 | AT5G05610.2 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 1.76e-88 | 262 |
| Msa0322610 | AT5G05610.1 | 62.140 | 243 | 82 | 6 | 11 | 252 | 7 | 240 | 1.76e-88 | 262 |
| Msa0322610 | AT3G11200.1 | 61.508 | 252 | 88 | 5 | 3 | 252 | 1 | 245 | 1.90e-86 | 257 |
| Msa0322610 | AT5G20510.3 | 75.758 | 165 | 40 | 0 | 3 | 167 | 1 | 165 | 6.79e-84 | 249 |
| Msa0322610 | AT3G11200.2 | 61.111 | 216 | 75 | 5 | 39 | 252 | 24 | 232 | 6.36e-71 | 218 |
| Msa0322610 | AT2G02470.3 | 75.796 | 157 | 36 | 2 | 12 | 168 | 9 | 163 | 1.22e-69 | 215 |
Find 85 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATATCCTGGCGAATTA+TGG | 0.222686 | 2_4:-25671195 | Msa0322610:CDS |
| TTCTACTTCGGCGCAAGATT+TGG | 0.307978 | 2_4:-25671028 | Msa0322610:CDS |
| GCTGTCCAGCATGGAGTTAC+AGG | 0.319939 | 2_4:+25669314 | None:intergenic |
| GGGACTGAAATGCACGAAAA+TGG | 0.334313 | 2_4:+25669257 | None:intergenic |
| TATCTGCATCAGATGAGTTC+TGG | 0.365648 | 2_4:-25669493 | Msa0322610:CDS |
| CTCTCTGTTGCTTTCTACTT+CGG | 0.381438 | 2_4:-25671040 | Msa0322610:CDS |
| CATTGGGCATCAACTTTGCT+AGG | 0.401762 | 2_4:-25671123 | Msa0322610:CDS |
| ATATAAATATCCCAATATAC+AGG | 0.402259 | 2_4:+25669159 | None:intergenic |
| TGGATATCCTGGCGAATTAT+GGG | 0.410663 | 2_4:-25671194 | Msa0322610:CDS |
| AGAAGTTCCTCCTGAACTTC+CGG | 0.414185 | 2_4:-25671152 | Msa0322610:CDS |
| TTGATGCCCAATGCAGGTTC+CGG | 0.415327 | 2_4:+25671133 | None:intergenic |
| GGCATCAACTTTGCTAGGGA+TGG | 0.420013 | 2_4:-25671118 | Msa0322610:CDS |
| AAGGAGAATCTTTCTCTGTA+TGG | 0.424220 | 2_4:-25671214 | Msa0322610:CDS |
| GACTTCAAGGGCCGTAGAGC+TGG | 0.434123 | 2_4:-25672798 | Msa0322610:CDS |
| AGCTGTCTTCCGTGACTTCA+AGG | 0.434860 | 2_4:-25672811 | Msa0322610:CDS |
| TGATCTGCCAACAATATTTG+AGG | 0.435492 | 2_4:-25669972 | Msa0322610:CDS |
| TGAACTTCCGGAACCTGCAT+TGG | 0.439289 | 2_4:-25671140 | Msa0322610:CDS |
| AAAAGGGTCATGGAACTTGC+TGG | 0.449501 | 2_4:-25672867 | Msa0322610:exon |
| CATGCAGCGTGGATCTGAAC+TGG | 0.451670 | 2_4:-25669612 | Msa0322610:intron |
| TCACTTCCCTATGGTATTCA+AGG | 0.455959 | 2_4:+25669353 | None:intergenic |
| CTTTCTCTGTATGGATATCC+TGG | 0.457002 | 2_4:-25671205 | Msa0322610:CDS |
| AATGCAGGTTCCGGAAGTTC+AGG | 0.458761 | 2_4:+25671142 | None:intergenic |
| GAACTTCCGGAACCTGCATT+GGG | 0.459330 | 2_4:-25671139 | Msa0322610:CDS |
| ATTTATATGTTCTTAGTACC+TGG | 0.465385 | 2_4:-25669144 | Msa0322610:three_prime_UTR |
| TTAAATATTTGATAGTTGAC+TGG | 0.475722 | 2_4:-25669207 | Msa0322610:three_prime_UTR |
| AAGAAGATGATGAAAATGAG+AGG | 0.475832 | 2_4:+25673011 | None:intergenic |
| TTGATTAAAGCTCTCACCAC+TGG | 0.479655 | 2_4:-25672774 | Msa0322610:intron |
| CTGTTGTGACTTGAGACAGA+TGG | 0.481520 | 2_4:+25669911 | None:intergenic |
| TTGATGTGCTCAGCCCGGGC+AGG | 0.484353 | 2_4:+25669416 | None:intergenic |
| CTGCTTGATGTGCTCAGCCC+GGG | 0.490873 | 2_4:+25669412 | None:intergenic |
| ACAATATTTGAGGTTGTGAC+CGG | 0.491460 | 2_4:-25669962 | Msa0322610:CDS |
| TTGCTGTTCACAGTGATACA+TGG | 0.492333 | 2_4:-25671066 | Msa0322610:CDS |
| ACTGCTTGATGTGCTCAGCC+CGG | 0.493704 | 2_4:+25669411 | None:intergenic |
| TCAGGAGGAACTTCTTCAGC+AGG | 0.502111 | 2_4:+25671160 | None:intergenic |
| CTTGCAACAATAAGAGAGTC+CGG | 0.504167 | 2_4:-25669376 | Msa0322610:CDS |
| TGTTCGCAAGCATGCTGCAT+TGG | 0.504506 | 2_4:-25669060 | Msa0322610:three_prime_UTR |
| TATCCCAATATACAGGGAAA+AGG | 0.507518 | 2_4:+25669166 | None:intergenic |
| GTGTGAAGATCACTCCTGCC+CGG | 0.508233 | 2_4:-25669430 | Msa0322610:CDS |
| ATCTGCTAAGAAGCAGACTA+AGG | 0.509595 | 2_4:-25669939 | Msa0322610:CDS |
| AGTCTGCTTCTTAGCAGATC+CGG | 0.514682 | 2_4:+25669943 | None:intergenic |
| ATATGTGAGAAGTGGTATCA+TGG | 0.515110 | 2_4:-25669458 | Msa0322610:CDS |
| TTCCCTATGGTATTCAAGGC+CGG | 0.515731 | 2_4:+25669357 | None:intergenic |
| AACAGCAACAAGTCAAAGTC+AGG | 0.516207 | 2_4:-25669893 | Msa0322610:CDS |
| CCTAACCAGGGTCACACTGC+TGG | 0.524327 | 2_4:+25672627 | None:intergenic |
| GTGACTTCCCATAATTCGCC+AGG | 0.524535 | 2_4:+25671187 | None:intergenic |
| GCATCAACTTTGCTAGGGAT+GGG | 0.525115 | 2_4:-25671117 | Msa0322610:CDS |
| GACGACGAAGAGGAGGATCA+AGG | 0.529279 | 2_4:-25669545 | Msa0322610:CDS |
| CTCTACGGCCCTTGAAGTCA+CGG | 0.531441 | 2_4:+25672802 | None:intergenic |
| TATCCACAAAATAAGTTGAC+GGG | 0.536138 | 2_4:+25669237 | None:intergenic |
| ATGGGATGCAAGAAAAGGAT+TGG | 0.537031 | 2_4:-25671099 | Msa0322610:CDS |
| GTCATGGAACTTGCTGGTGA+TGG | 0.537299 | 2_4:-25672861 | Msa0322610:CDS |
| GATCATTAATCAGAGTGAAA+AGG | 0.538004 | 2_4:+25669990 | None:intergenic |
| AAAAGTAACTCACTTCCCTA+TGG | 0.538565 | 2_4:+25669344 | None:intergenic |
| GTCACAACCTCAAATATTGT+TGG | 0.541746 | 2_4:+25669965 | None:intergenic |
| TTTGTGATCTGCCACATTCG+CGG | 0.542627 | 2_4:-25669027 | Msa0322610:three_prime_UTR |
| ACGACGAAGAGGAGGATCAA+GGG | 0.543159 | 2_4:-25669544 | Msa0322610:CDS |
| ATATCCACAAAATAAGTTGA+CGG | 0.551074 | 2_4:+25669236 | None:intergenic |
| TCGCTCCTGTAACTCCATGC+TGG | 0.551164 | 2_4:-25669319 | Msa0322610:three_prime_UTR |
| AAAAGAAGATGACGAGGGAG+TGG | 0.555346 | 2_4:-25669567 | Msa0322610:CDS |
| TAGGGATGGGATGCAAGAAA+AGG | 0.555698 | 2_4:-25671104 | Msa0322610:CDS |
| GCAAAGTTGATGCCCAATGC+AGG | 0.559003 | 2_4:+25671127 | None:intergenic |
| ACGCTCTGATTCCGCGAATG+TGG | 0.560095 | 2_4:+25669016 | None:intergenic |
| TGTGAAGATCACTCCTGCCC+GGG | 0.562262 | 2_4:-25669429 | Msa0322610:CDS |
| ACTCTCTTATTGTTGCAAGC+AGG | 0.563182 | 2_4:+25669380 | None:intergenic |
| AGAAGATGATGAAAATGAGA+GGG | 0.569001 | 2_4:+25673012 | None:intergenic |
| GCTGTCTTCCGTGACTTCAA+GGG | 0.569487 | 2_4:-25672810 | Msa0322610:CDS |
| CTTTAATCAAGCCAGCTCTA+CGG | 0.578337 | 2_4:+25672787 | None:intergenic |
| TTGGCTTTGATAAAGCCGAC+AGG | 0.579784 | 2_4:-25671009 | Msa0322610:intron |
| AGTCCGGCCTTGAATACCAT+AGG | 0.585372 | 2_4:-25669360 | Msa0322610:exon |
| CCAATATACAGGGAAAAGGT+AGG | 0.585786 | 2_4:+25669170 | None:intergenic |
| ATTGGGCATCAACTTTGCTA+GGG | 0.592516 | 2_4:-25671122 | Msa0322610:CDS |
| GCCAGCAAAAGAAGATGACG+AGG | 0.593624 | 2_4:-25669573 | Msa0322610:CDS |
| CAAGGGGAATGCGCTGCATG+CGG | 0.601102 | 2_4:-25669527 | Msa0322610:CDS |
| AACTAGTTAGCTGTCCAGCA+TGG | 0.601903 | 2_4:+25669305 | None:intergenic |
| CGACGAAGAGGAGGATCAAG+GGG | 0.610579 | 2_4:-25669543 | Msa0322610:CDS |
| CGAGGGAGTGGACGACGAAG+AGG | 0.626370 | 2_4:-25669555 | Msa0322610:CDS |
| GTCCGGCCTTGAATACCATA+GGG | 0.629003 | 2_4:-25669359 | Msa0322610:exon |
| GGGAGTGGACGACGAAGAGG+AGG | 0.630295 | 2_4:-25669552 | Msa0322610:CDS |
| GCAGGTTCCGGAAGTTCAGG+AGG | 0.632832 | 2_4:+25671145 | None:intergenic |
| TATAAATATCCCAATATACA+GGG | 0.636714 | 2_4:+25669160 | None:intergenic |
| GTCAAAGTCAGGCTCAAAAG+CGG | 0.660535 | 2_4:-25669882 | Msa0322610:intron |
| AAGACAGCTTCAACAGTACG+AGG | 0.662619 | 2_4:+25672825 | None:intergenic |
| GCTGCGACATATGTGAGAAG+TGG | 0.672986 | 2_4:-25669466 | Msa0322610:CDS |
| AGACAGCTTCAACAGTACGA+GGG | 0.736429 | 2_4:+25672826 | None:intergenic |
| CCAGCAAAAGAAGATGACGA+GGG | 0.742179 | 2_4:-25669572 | Msa0322610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTAAAAAATGAAC+TGG | - | chr2_4:25669869-25669888 | Msa0322610:intron | 10.0% |
| !!! | TTAATTCAATTTTTTTTTTC+TGG | + | chr2_4:25670600-25670619 | None:intergenic | 10.0% |
| !! | AATAAAAATGAAAATATACA+AGG | + | chr2_4:25672215-25672234 | None:intergenic | 10.0% |
| !!! | ATTGTATATGTTTTCAAAAA+TGG | - | chr2_4:25670242-25670261 | Msa0322610:intron | 15.0% |
| !!! | TTTATGAAATAATAGGATTT+TGG | + | chr2_4:25670297-25670316 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAAATGAACTGGT+TGG | - | chr2_4:25669873-25669892 | Msa0322610:intron | 20.0% |
| !! | TAGAATATAGCAAAAATTGT+AGG | + | chr2_4:25670062-25670081 | None:intergenic | 20.0% |
| !! | TGGATATTTATACTAGATTT+GGG | + | chr2_4:25670500-25670519 | None:intergenic | 20.0% |
| !! | ATGGATATTTATACTAGATT+TGG | + | chr2_4:25670501-25670520 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTTCTGGATTC+GGG | + | chr2_4:25670593-25670612 | None:intergenic | 20.0% |
| !!! | CAATTTTTTTTTTCTGGATT+CGG | + | chr2_4:25670594-25670613 | None:intergenic | 20.0% |
| !! | AACATTCCATAACATAATAA+AGG | + | chr2_4:25671085-25671104 | None:intergenic | 20.0% |
| !! | TTATTATGTTATGGAATGTT+TGG | - | chr2_4:25671085-25671104 | Msa0322610:CDS | 20.0% |
| !! | ACAAGAAATATAACGATTAA+CGG | + | chr2_4:25671121-25671140 | None:intergenic | 20.0% |
| !! | AGTATATGTTTGTATATATG+TGG | + | chr2_4:25671225-25671244 | None:intergenic | 20.0% |
| !!! | TTAAATATTTGATAGTTGAC+TGG | - | chr2_4:25672838-25672857 | Msa0322610:CDS | 20.0% |
| !! | TATAAATATCCCAATATACA+GGG | + | chr2_4:25672888-25672907 | None:intergenic | 20.0% |
| !! | ATATAAATATCCCAATATAC+AGG | + | chr2_4:25672889-25672908 | None:intergenic | 20.0% |
| ! | TTTCTCTCTCTTCAAAAAAT+GGG | + | chr2_4:25669160-25669179 | None:intergenic | 25.0% |
| !! | TTTTCTCTCTCTTCAAAAAA+TGG | + | chr2_4:25669161-25669180 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAGAGAGAGAAAA+AGG | - | chr2_4:25669161-25669180 | Msa0322610:three_prime_UTR | 25.0% |
| !!! | TTTTTGAAGAGAGAGAAAAA+GGG | - | chr2_4:25669162-25669181 | Msa0322610:three_prime_UTR | 25.0% |
| !!! | TAAGATTGTTTTGTGTTTGT+CGG | - | chr2_4:25669457-25669476 | Msa0322610:CDS | 25.0% |
| ! | CTTATATACTGTATTGTTTG+TGG | - | chr2_4:25669533-25669552 | Msa0322610:CDS | 25.0% |
| !!! | AGTCATGTAATTTTTAACTG+TGG | + | chr2_4:25669833-25669852 | None:intergenic | 25.0% |
| ! | CATAGGGTTTATGAAATAAT+AGG | + | chr2_4:25670304-25670323 | None:intergenic | 25.0% |
| ! | TCCAAAATCAAATACACATA+GGG | + | chr2_4:25670320-25670339 | None:intergenic | 25.0% |
| ! | ATCCAAAATCAAATACACAT+AGG | + | chr2_4:25670321-25670340 | None:intergenic | 25.0% |
| ! | TGGATTGACATTGTTTAAAA+AGG | - | chr2_4:25670336-25670355 | Msa0322610:intron | 25.0% |
| ! | TCATAGTATCATACATATCA+TGG | + | chr2_4:25670399-25670418 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTCTGGATTCG+GGG | + | chr2_4:25670592-25670611 | None:intergenic | 25.0% |
| ! | AAAAGAATTATCATACCTGT+CGG | + | chr2_4:25671054-25671073 | None:intergenic | 25.0% |
| ! | ATAACATAATAAAGGATTGG+AGG | + | chr2_4:25671077-25671096 | None:intergenic | 25.0% |
| ! | TCCAATCCTTTATTATGTTA+TGG | - | chr2_4:25671076-25671095 | Msa0322610:CDS | 25.0% |
| ! | TCCATAACATAATAAAGGAT+TGG | + | chr2_4:25671080-25671099 | None:intergenic | 25.0% |
| !! | TTCTTTTGACAATTTAAGCA+AGG | + | chr2_4:25671403-25671422 | None:intergenic | 25.0% |
| ! | AATTGTCAAAAGAAATAGTG+TGG | - | chr2_4:25671409-25671428 | Msa0322610:intron | 25.0% |
| ! | CAAAACTAAATGCAAACTAT+AGG | + | chr2_4:25671565-25671584 | None:intergenic | 25.0% |
| ! | TGTGTTATGCAATATCAAAA+TGG | - | chr2_4:25671583-25671602 | Msa0322610:intron | 25.0% |
| ! | TTTCTCTCTTTATGCAAAAT+AGG | - | chr2_4:25671745-25671764 | Msa0322610:intron | 25.0% |
| ! | TACATTGTAATTCTTCATGT+AGG | - | chr2_4:25672027-25672046 | Msa0322610:intron | 25.0% |
| !! | TATTTTGCTTGAATAGATGT+AGG | - | chr2_4:25672331-25672350 | Msa0322610:intron | 25.0% |
| ! | TGTCTTATAATAATGCTGAA+TGG | - | chr2_4:25672357-25672376 | Msa0322610:intron | 25.0% |
| !! | ATATCCACAAAATAAGTTGA+CGG | + | chr2_4:25672812-25672831 | None:intergenic | 25.0% |
| ! | ATTTATATGTTCTTAGTACC+TGG | - | chr2_4:25672901-25672920 | Msa0322610:five_prime_UTR | 25.0% |
| AGAAGATGATGAAAATGAGA+GGG | + | chr2_4:25669036-25669055 | None:intergenic | 30.0% | |
| AAGAAGATGATGAAAATGAG+AGG | + | chr2_4:25669037-25669056 | None:intergenic | 30.0% | |
| AGAACGAAGTGAAAGAAAAA+TGG | + | chr2_4:25669129-25669148 | None:intergenic | 30.0% | |
| TACTGTATTGTTTGTGGATT+TGG | - | chr2_4:25669539-25669558 | Msa0322610:CDS | 30.0% | |
| ACTGTATTGTTTGTGGATTT+GGG | - | chr2_4:25669540-25669559 | Msa0322610:CDS | 30.0% | |
| ATGAACGTTGTGATTTGAAT+TGG | - | chr2_4:25669696-25669715 | Msa0322610:intron | 30.0% | |
| TGAACGTTGTGATTTGAATT+GGG | - | chr2_4:25669697-25669716 | Msa0322610:intron | 30.0% | |
| !! | GTTTTGACAATGTTGTCATT+TGG | - | chr2_4:25669935-25669954 | Msa0322610:CDS | 30.0% |
| ACTTATATAGATCAACAACG+AGG | + | chr2_4:25669975-25669994 | None:intergenic | 30.0% | |
| ATTGTTCTGATGAACTTATC+TGG | - | chr2_4:25670099-25670118 | Msa0322610:intron | 30.0% | |
| TTGTTCTGATGAACTTATCT+GGG | - | chr2_4:25670100-25670119 | Msa0322610:intron | 30.0% | |
| !! | ACCCTATGTGTATTTGATTT+TGG | - | chr2_4:25670316-25670335 | Msa0322610:intron | 30.0% |
| AATATCCATGTAGATTTCGT+AGG | - | chr2_4:25670512-25670531 | Msa0322610:intron | 30.0% | |
| ! | AAACTAGAAAACCTTTTACC+TGG | - | chr2_4:25670651-25670670 | Msa0322610:intron | 30.0% |
| TTGATATAACACCAGGTAAA+AGG | + | chr2_4:25670665-25670684 | None:intergenic | 30.0% | |
| CATATGTTTGATATAACACC+AGG | + | chr2_4:25670672-25670691 | None:intergenic | 30.0% | |
| AACATGTTCTACATCAGAAA+AGG | - | chr2_4:25670812-25670831 | Msa0322610:intron | 30.0% | |
| ! | AAACACGGCAAAAATGTTTT+GGG | + | chr2_4:25671146-25671165 | None:intergenic | 30.0% |
| ! | AAAACACGGCAAAAATGTTT+TGG | + | chr2_4:25671147-25671166 | None:intergenic | 30.0% |
| ! | TCTCCTTATTTATGATGCAT+AGG | - | chr2_4:25671487-25671506 | Msa0322610:intron | 30.0% |
| CTTCCTATGCATCATAAATA+AGG | + | chr2_4:25671493-25671512 | None:intergenic | 30.0% | |
| ! | ATGATGCATAGGAAGATTTT+CGG | - | chr2_4:25671498-25671517 | Msa0322610:intron | 30.0% |
| ATTACAATGTATCACAGATC+AGG | + | chr2_4:25672018-25672037 | None:intergenic | 30.0% | |
| GATCATTAATCAGAGTGAAA+AGG | + | chr2_4:25672058-25672077 | None:intergenic | 30.0% | |
| AAATATACAAGGAAGAGAGA+AGG | + | chr2_4:25672204-25672223 | None:intergenic | 30.0% | |
| ! | TATCCACAAAATAAGTTGAC+GGG | + | chr2_4:25672811-25672830 | None:intergenic | 30.0% |
| !! | GCACAAACAATTATTTTTCC+AGG | + | chr2_4:25672922-25672941 | None:intergenic | 30.0% |
| AAGAGTAAAAACCCTAACCA+GGG | + | chr2_4:25669433-25669452 | None:intergenic | 35.0% | |
| TCATTACACACACAGCAAAA+GGG | + | chr2_4:25669746-25669765 | None:intergenic | 35.0% | |
| ATCATTACACACACAGCAAA+AGG | + | chr2_4:25669747-25669766 | None:intergenic | 35.0% | |
| ATAGAACCAGTGAGTTCAAT+CGG | - | chr2_4:25669802-25669821 | Msa0322610:intron | 35.0% | |
| AGGGTTTCACAATTCACATA+GGG | + | chr2_4:25670209-25670228 | None:intergenic | 35.0% | |
| TAGGGTTTCACAATTCACAT+AGG | + | chr2_4:25670210-25670229 | None:intergenic | 35.0% | |
| ACAATCCTACGAAATCTACA+TGG | + | chr2_4:25670520-25670539 | None:intergenic | 35.0% | |
| !! | TGTTACTGGATTTGGTGTAT+CGG | + | chr2_4:25670563-25670582 | None:intergenic | 35.0% |
| AGCACTTGAGAATAGATGAA+GGG | + | chr2_4:25670623-25670642 | None:intergenic | 35.0% | |
| TAGCACTTGAGAATAGATGA+AGG | + | chr2_4:25670624-25670643 | None:intergenic | 35.0% | |
| AAGGAGAATCTTTCTCTGTA+TGG | - | chr2_4:25670831-25670850 | Msa0322610:intron | 35.0% | |
| TGTAGCTTCAGGAAAAAACA+CGG | + | chr2_4:25671161-25671180 | None:intergenic | 35.0% | |
| !! | TAAGTGCTGAACACATGTTT+AGG | + | chr2_4:25671198-25671217 | None:intergenic | 35.0% |
| GTTCTGATTGAGATCATATG+TGG | - | chr2_4:25671275-25671294 | Msa0322610:intron | 35.0% | |
| CTGAACTTATGTTTCTTGTG+CGG | - | chr2_4:25671321-25671340 | Msa0322610:intron | 35.0% | |
| TGACAATTTAAGCAAGGAAG+TGG | + | chr2_4:25671397-25671416 | None:intergenic | 35.0% | |
| TCAAAAGAAATAGTGTGGAG+AGG | - | chr2_4:25671414-25671433 | Msa0322610:intron | 35.0% | |
| ! | GACACTTAGCATTGTTTTCA+TGG | - | chr2_4:25671774-25671793 | Msa0322610:intron | 35.0% |
| ATGCTTAGCATTGTTTGCAT+GGG | - | chr2_4:25671850-25671869 | Msa0322610:intron | 35.0% | |
| TGATCTGCCAACAATATTTG+AGG | - | chr2_4:25672073-25672092 | Msa0322610:intron | 35.0% | |
| GTCACAACCTCAAATATTGT+TGG | + | chr2_4:25672083-25672102 | None:intergenic | 35.0% | |
| ! | ACAATATTTGAGGTTGTGAC+CGG | - | chr2_4:25672083-25672102 | Msa0322610:intron | 35.0% |
| ! | TGAGCAGCACATATTTTGTA+AGG | + | chr2_4:25672401-25672420 | None:intergenic | 35.0% |
| ATATGTGAGAAGTGGTATCA+TGG | - | chr2_4:25672587-25672606 | Msa0322610:intron | 35.0% | |
| AAAAGTAACTCACTTCCCTA+TGG | + | chr2_4:25672704-25672723 | None:intergenic | 35.0% | |
| ! | CTACCTTTTCCCTGTATATT+GGG | - | chr2_4:25672876-25672895 | Msa0322610:exon | 35.0% |
| TATCCCAATATACAGGGAAA+AGG | + | chr2_4:25672882-25672901 | None:intergenic | 35.0% | |
| AAGAGAGAGAAAAAGGGTCA+TGG | - | chr2_4:25669168-25669187 | Msa0322610:three_prime_UTR | 40.0% | |
| CTTTAATCAAGCCAGCTCTA+CGG | + | chr2_4:25669261-25669280 | None:intergenic | 40.0% | |
| TTGATTAAAGCTCTCACCAC+TGG | - | chr2_4:25669271-25669290 | Msa0322610:three_prime_UTR | 40.0% | |
| CAAGAGTAAAAACCCTAACC+AGG | + | chr2_4:25669434-25669453 | None:intergenic | 40.0% | |
| CAATGTTGTTAGATCCAGAC+CGG | - | chr2_4:25669777-25669796 | Msa0322610:intron | 40.0% | |
| GTTAAACCGATTGAACTCAC+TGG | + | chr2_4:25669811-25669830 | None:intergenic | 40.0% | |
| !! | ATGAACTGGTTGGTTTGATC+TGG | - | chr2_4:25669883-25669902 | Msa0322610:CDS | 40.0% |
| TTGTCAAAACCAGATCGAAC+TGG | + | chr2_4:25669925-25669944 | None:intergenic | 40.0% | |
| ! | TGCTGCATATGTGTCTGTTT+TGG | - | chr2_4:25670140-25670159 | Msa0322610:intron | 40.0% |
| ! | GCTGCATATGTGTCTGTTTT+GGG | - | chr2_4:25670141-25670160 | Msa0322610:intron | 40.0% |
| TACAATCCGAGCTGTTCTTA+GGG | + | chr2_4:25670228-25670247 | None:intergenic | 40.0% | |
| ATACAATCCGAGCTGTTCTT+AGG | + | chr2_4:25670229-25670248 | None:intergenic | 40.0% | |
| ! | TAGATTTGGGATCATTGCAG+TGG | + | chr2_4:25670487-25670506 | None:intergenic | 40.0% |
| !!! | TTTTTTCTGGATTCGGGGTT+GGG | + | chr2_4:25670587-25670606 | None:intergenic | 40.0% |
| !!! | TTTTTTTCTGGATTCGGGGT+TGG | + | chr2_4:25670588-25670607 | None:intergenic | 40.0% |
| CTTTCTCTGTATGGATATCC+TGG | - | chr2_4:25670840-25670859 | Msa0322610:intron | 40.0% | |
| ATGGATATCCTGGCGAATTA+TGG | - | chr2_4:25670850-25670869 | Msa0322610:intron | 40.0% | |
| TGGATATCCTGGCGAATTAT+GGG | - | chr2_4:25670851-25670870 | Msa0322610:intron | 40.0% | |
| ATTGGGCATCAACTTTGCTA+GGG | - | chr2_4:25670923-25670942 | Msa0322610:intron | 40.0% | |
| ATGGGATGCAAGAAAAGGAT+TGG | - | chr2_4:25670946-25670965 | Msa0322610:intron | 40.0% | |
| ! | TTGCTGTTCACAGTGATACA+TGG | - | chr2_4:25670979-25670998 | Msa0322610:intron | 40.0% |
| !! | CTCTCTGTTGCTTTCTACTT+CGG | - | chr2_4:25671005-25671024 | Msa0322610:intron | 40.0% |
| TATAACGATTAACGGAGACG+CGG | + | chr2_4:25671113-25671132 | None:intergenic | 40.0% | |
| ATGCTACAACTTGTAGCTTC+AGG | + | chr2_4:25671172-25671191 | None:intergenic | 40.0% | |
| ! | CTTGTGCGGCAATATTGATT+TGG | - | chr2_4:25671335-25671354 | Msa0322610:intron | 40.0% |
| TGCAAACTATAGGCAGTAGA+TGG | + | chr2_4:25671555-25671574 | None:intergenic | 40.0% | |
| ATCAAACATAGAGATGCGCA+TGG | + | chr2_4:25671832-25671851 | None:intergenic | 40.0% | |
| GATGCTTAGCATTGTTTGCA+TGG | - | chr2_4:25671849-25671868 | Msa0322610:intron | 40.0% | |
| ATTTGTGTGTGCAAGTGCAT+TGG | - | chr2_4:25671900-25671919 | Msa0322610:intron | 40.0% | |
| ATCTGCTAAGAAGCAGACTA+AGG | - | chr2_4:25672106-25672125 | Msa0322610:intron | 40.0% | |
| AACAGCAACAAGTCAAAGTC+AGG | - | chr2_4:25672152-25672171 | Msa0322610:intron | 40.0% | |
| ATAATGCTGAATGGAGTCGT+CGG | - | chr2_4:25672366-25672385 | Msa0322610:intron | 40.0% | |
| TATCTGCATCAGATGAGTTC+TGG | - | chr2_4:25672552-25672571 | Msa0322610:intron | 40.0% | |
| ACTCTCTTATTGTTGCAAGC+AGG | + | chr2_4:25672668-25672687 | None:intergenic | 40.0% | |
| CTTGCAACAATAAGAGAGTC+CGG | - | chr2_4:25672669-25672688 | Msa0322610:intron | 40.0% | |
| TCACTTCCCTATGGTATTCA+AGG | + | chr2_4:25672695-25672714 | None:intergenic | 40.0% | |
| !!! | AGTCCCGTCAACTTATTTTG+TGG | - | chr2_4:25672805-25672824 | Msa0322610:CDS | 40.0% |
| CCAATATACAGGGAAAAGGT+AGG | + | chr2_4:25672878-25672897 | None:intergenic | 40.0% | |
| ! | CCTACCTTTTCCCTGTATAT+TGG | - | chr2_4:25672875-25672894 | Msa0322610:exon | 40.0% |
| ! | CATGCTGCATTGGATTTTTC+AGG | - | chr2_4:25672995-25673014 | Msa0322610:five_prime_UTR | 40.0% |
| GAGAGAGAGAGAGAGAGATT+TGG | + | chr2_4:25669101-25669120 | None:intergenic | 45.0% | |
| AAAAGGGTCATGGAACTTGC+TGG | - | chr2_4:25669178-25669197 | Msa0322610:three_prime_UTR | 45.0% | |
| AGACAGCTTCAACAGTACGA+GGG | + | chr2_4:25669222-25669241 | None:intergenic | 45.0% | |
| AAGACAGCTTCAACAGTACG+AGG | + | chr2_4:25669223-25669242 | None:intergenic | 45.0% | |
| !! | GAACTCACTGGTTCTATCTC+CGG | + | chr2_4:25669799-25669818 | None:intergenic | 45.0% |
| GTGAAACCCTAAGAACAGCT+CGG | - | chr2_4:25670219-25670238 | Msa0322610:intron | 45.0% | |
| ! | GGTTGGGTTGTTACTGGATT+TGG | + | chr2_4:25670571-25670590 | None:intergenic | 45.0% |
| AGAAGTTCCTCCTGAACTTC+CGG | - | chr2_4:25670893-25670912 | Msa0322610:intron | 45.0% | |
| CATTGGGCATCAACTTTGCT+AGG | - | chr2_4:25670922-25670941 | Msa0322610:intron | 45.0% | |
| GCATCAACTTTGCTAGGGAT+GGG | - | chr2_4:25670928-25670947 | Msa0322610:intron | 45.0% | |
| TAGGGATGGGATGCAAGAAA+AGG | - | chr2_4:25670941-25670960 | Msa0322610:intron | 45.0% | |
| TTCTACTTCGGCGCAAGATT+TGG | - | chr2_4:25671017-25671036 | Msa0322610:CDS | 45.0% | |
| !! | TTGGCTTTGATAAAGCCGAC+AGG | - | chr2_4:25671036-25671055 | Msa0322610:CDS | 45.0% |
| TCACATCACTCATGCTCATC+AGG | - | chr2_4:25671677-25671696 | Msa0322610:intron | 45.0% | |
| CACATCACTCATGCTCATCA+GGG | - | chr2_4:25671678-25671697 | Msa0322610:intron | 45.0% | |
| AGTCTGCTTCTTAGCAGATC+CGG | + | chr2_4:25672105-25672124 | None:intergenic | 45.0% | |
| CTGTTGTGACTTGAGACAGA+TGG | + | chr2_4:25672137-25672156 | None:intergenic | 45.0% | |
| GTCAAAGTCAGGCTCAAAAG+CGG | - | chr2_4:25672163-25672182 | Msa0322610:intron | 45.0% | |
| ! | TCGTCATCTTCTTTTGCTGG+CGG | + | chr2_4:25672473-25672492 | None:intergenic | 45.0% |
| CCAGCAAAAGAAGATGACGA+GGG | - | chr2_4:25672473-25672492 | Msa0322610:intron | 45.0% | |
| AAAAGAAGATGACGAGGGAG+TGG | - | chr2_4:25672478-25672497 | Msa0322610:intron | 45.0% | |
| TTCCCTATGGTATTCAAGGC+CGG | + | chr2_4:25672691-25672710 | None:intergenic | 45.0% | |
| AACTAGTTAGCTGTCCAGCA+TGG | + | chr2_4:25672743-25672762 | None:intergenic | 45.0% | |
| GGGACTGAAATGCACGAAAA+TGG | + | chr2_4:25672791-25672810 | None:intergenic | 45.0% | |
| TTTGTGATCTGCCACATTCG+CGG | - | chr2_4:25673018-25673037 | Msa0322610:five_prime_UTR | 45.0% | |
| !! | GTCATGGAACTTGCTGGTGA+TGG | - | chr2_4:25669184-25669203 | Msa0322610:three_prime_UTR | 50.0% |
| AGCTGTCTTCCGTGACTTCA+AGG | - | chr2_4:25669234-25669253 | Msa0322610:three_prime_UTR | 50.0% | |
| GCTGTCTTCCGTGACTTCAA+GGG | - | chr2_4:25669235-25669254 | Msa0322610:three_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAAACCAG+TGG | + | chr2_4:25669290-25669309 | None:intergenic | 50.0% | |
| ! | TTTTACCAGCAGTGTGACCC+TGG | - | chr2_4:25669413-25669432 | Msa0322610:CDS | 50.0% |
| TTGAACCAGCCAGTTCGATC+TGG | - | chr2_4:25669913-25669932 | Msa0322610:CDS | 50.0% | |
| CAAAACCAGATCGAACTGGC+TGG | + | chr2_4:25669921-25669940 | None:intergenic | 50.0% | |
| ! | ATTCGGGGTTGGGTTGTTAC+TGG | + | chr2_4:25670577-25670596 | None:intergenic | 50.0% |
| GTGACTTCCCATAATTCGCC+AGG | + | chr2_4:25670861-25670880 | None:intergenic | 50.0% | |
| TCAGGAGGAACTTCTTCAGC+AGG | + | chr2_4:25670888-25670907 | None:intergenic | 50.0% | |
| AATGCAGGTTCCGGAAGTTC+AGG | + | chr2_4:25670906-25670925 | None:intergenic | 50.0% | |
| TGAACTTCCGGAACCTGCAT+TGG | - | chr2_4:25670905-25670924 | Msa0322610:intron | 50.0% | |
| GAACTTCCGGAACCTGCATT+GGG | - | chr2_4:25670906-25670925 | Msa0322610:intron | 50.0% | |
| TTGATGCCCAATGCAGGTTC+CGG | + | chr2_4:25670915-25670934 | None:intergenic | 50.0% | |
| !! | GCAAAGTTGATGCCCAATGC+AGG | + | chr2_4:25670921-25670940 | None:intergenic | 50.0% |
| GGCATCAACTTTGCTAGGGA+TGG | - | chr2_4:25670927-25670946 | Msa0322610:intron | 50.0% | |
| ATCACTCATGCTCATCAGGG+AGG | - | chr2_4:25671681-25671700 | Msa0322610:intron | 50.0% | |
| GATTGTTTCCTCATGCAGCG+TGG | - | chr2_4:25672422-25672441 | Msa0322610:intron | 50.0% | |
| GCCAGCAAAAGAAGATGACG+AGG | - | chr2_4:25672472-25672491 | Msa0322610:intron | 50.0% | |
| ! | CCCTCGTCATCTTCTTTTGC+TGG | + | chr2_4:25672476-25672495 | None:intergenic | 50.0% |
| ACGACGAAGAGGAGGATCAA+GGG | - | chr2_4:25672501-25672520 | Msa0322610:intron | 50.0% | |
| GCTGCGACATATGTGAGAAG+TGG | - | chr2_4:25672579-25672598 | Msa0322610:intron | 50.0% | |
| AGTCCGGCCTTGAATACCAT+AGG | - | chr2_4:25672685-25672704 | Msa0322610:intron | 50.0% | |
| GTCCGGCCTTGAATACCATA+GGG | - | chr2_4:25672686-25672705 | Msa0322610:intron | 50.0% | |
| TGTTCGCAAGCATGCTGCAT+TGG | - | chr2_4:25672985-25673004 | Msa0322610:five_prime_UTR | 50.0% | |
| CTCTACGGCCCTTGAAGTCA+CGG | + | chr2_4:25669246-25669265 | None:intergenic | 55.0% | |
| CAGCAGTGTGACCCTGGTTA+GGG | - | chr2_4:25669419-25669438 | Msa0322610:CDS | 55.0% | |
| !! | CACTGGTTCTATCTCCGGTC+TGG | + | chr2_4:25669794-25669813 | None:intergenic | 55.0% |
| GTTCAGATCCACGCTGCATG+AGG | + | chr2_4:25672433-25672452 | None:intergenic | 55.0% | |
| CATGCAGCGTGGATCTGAAC+TGG | - | chr2_4:25672433-25672452 | Msa0322610:intron | 55.0% | |
| GACGACGAAGAGGAGGATCA+AGG | - | chr2_4:25672500-25672519 | Msa0322610:intron | 55.0% | |
| CGACGAAGAGGAGGATCAAG+GGG | - | chr2_4:25672502-25672521 | Msa0322610:intron | 55.0% | |
| GTGTGAAGATCACTCCTGCC+CGG | - | chr2_4:25672615-25672634 | Msa0322610:intron | 55.0% | |
| TGTGAAGATCACTCCTGCCC+GGG | - | chr2_4:25672616-25672635 | Msa0322610:intron | 55.0% | |
| ACTGCTTGATGTGCTCAGCC+CGG | + | chr2_4:25672637-25672656 | None:intergenic | 55.0% | |
| TCGCTCCTGTAACTCCATGC+TGG | - | chr2_4:25672726-25672745 | Msa0322610:intron | 55.0% | |
| GCTGTCCAGCATGGAGTTAC+AGG | + | chr2_4:25672734-25672753 | None:intergenic | 55.0% | |
| ACGCTCTGATTCCGCGAATG+TGG | + | chr2_4:25673032-25673051 | None:intergenic | 55.0% | |
| GACTTCAAGGGCCGTAGAGC+TGG | - | chr2_4:25669247-25669266 | Msa0322610:three_prime_UTR | 60.0% | |
| CCTAACCAGGGTCACACTGC+TGG | + | chr2_4:25669421-25669440 | None:intergenic | 60.0% | |
| CCAGCAGTGTGACCCTGGTT+AGG | - | chr2_4:25669418-25669437 | Msa0322610:CDS | 60.0% | |
| GCAGGTTCCGGAAGTTCAGG+AGG | + | chr2_4:25670903-25670922 | None:intergenic | 60.0% | |
| CAAGGGGAATGCGCTGCATG+CGG | - | chr2_4:25672518-25672537 | Msa0322610:intron | 60.0% | |
| CTGCTTGATGTGCTCAGCCC+GGG | + | chr2_4:25672636-25672655 | None:intergenic | 60.0% | |
| CGAGGGAGTGGACGACGAAG+AGG | - | chr2_4:25672490-25672509 | Msa0322610:intron | 65.0% | |
| GGGAGTGGACGACGAAGAGG+AGG | - | chr2_4:25672493-25672512 | Msa0322610:intron | 65.0% | |
| TTGATGTGCTCAGCCCGGGC+AGG | + | chr2_4:25672632-25672651 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 25669009 | 25673058 | 25669009 | ID=Msa0322610;Name=Msa0322610 |
| chr2_4 | mRNA | 25669009 | 25673058 | 25669009 | ID=Msa0322610-mRNA-1;Parent=Msa0322610;Name=Msa0322610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=178|1|1|1|1|1|5|361|253 |
| chr2_4 | exon | 25669009 | 25669627 | 25669009 | ID=Msa0322610-mRNA-1:exon:9034;Parent=Msa0322610-mRNA-1 |
| chr2_4 | exon | 25669883 | 25670018 | 25669883 | ID=Msa0322610-mRNA-1:exon:9033;Parent=Msa0322610-mRNA-1 |
| chr2_4 | exon | 25671010 | 25671238 | 25671010 | ID=Msa0322610-mRNA-1:exon:9032;Parent=Msa0322610-mRNA-1 |
| chr2_4 | exon | 25672633 | 25672665 | 25672633 | ID=Msa0322610-mRNA-1:exon:9031;Parent=Msa0322610-mRNA-1 |
| chr2_4 | exon | 25672775 | 25673058 | 25672775 | ID=Msa0322610-mRNA-1:exon:9030;Parent=Msa0322610-mRNA-1 |
| chr2_4 | five_prime_UTR | 25672881 | 25673058 | 25672881 | ID=Msa0322610-mRNA-1:five_prime_utr;Parent=Msa0322610-mRNA-1 |
| chr2_4 | CDS | 25672775 | 25672880 | 25672775 | ID=Msa0322610-mRNA-1:cds;Parent=Msa0322610-mRNA-1 |
| chr2_4 | CDS | 25672633 | 25672665 | 25672633 | ID=Msa0322610-mRNA-1:cds;Parent=Msa0322610-mRNA-1 |
| chr2_4 | CDS | 25671010 | 25671238 | 25671010 | ID=Msa0322610-mRNA-1:cds;Parent=Msa0322610-mRNA-1 |
| chr2_4 | CDS | 25669883 | 25670018 | 25669883 | ID=Msa0322610-mRNA-1:cds;Parent=Msa0322610-mRNA-1 |
| chr2_4 | CDS | 25669370 | 25669627 | 25669370 | ID=Msa0322610-mRNA-1:cds;Parent=Msa0322610-mRNA-1 |
| chr2_4 | three_prime_UTR | 25669009 | 25669369 | 25669009 | ID=Msa0322610-mRNA-1:three_prime_utr;Parent=Msa0322610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
