Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322640 | AFK49645.1 | 97.447 | 235 | 4 | 1 | 1 | 233 | 1 | 235 | 1.69e-168 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322640 | sp|Q93ZH2|NFYA3_ARATH | 46.739 | 184 | 90 | 4 | 26 | 204 | 129 | 309 | 1.91e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0322640 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322640 | MtrunA17_Chr2g0300261 | 97.447 | 235 | 4 | 1 | 1 | 233 | 1 | 235 | 1.56e-172 | 474 |
| Msa0322640 | MtrunA17_Chr8g0343451 | 47.917 | 192 | 91 | 6 | 11 | 202 | 103 | 285 | 8.68e-46 | 154 |
| Msa0322640 | MtrunA17_Chr2g0329811 | 51.007 | 149 | 61 | 4 | 6 | 145 | 108 | 253 | 6.04e-39 | 137 |
| Msa0322640 | MtrunA17_Chr8g0352251 | 51.515 | 132 | 57 | 3 | 33 | 162 | 114 | 240 | 1.23e-35 | 127 |
| Msa0322640 | MtrunA17_Chr3g0103391 | 59.459 | 111 | 38 | 4 | 23 | 133 | 123 | 226 | 1.38e-35 | 128 |
| Msa0322640 | MtrunA17_Chr2g0292411 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 2.01e-30 | 112 |
| Msa0322640 | MtrunA17_Chr1g0177091 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.56e-29 | 112 |
| Msa0322640 | MtrunA17_Chr7g0267581 | 52.500 | 120 | 39 | 5 | 32 | 150 | 134 | 236 | 5.71e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322640 | AT1G72830.1 | 46.739 | 184 | 90 | 4 | 26 | 204 | 129 | 309 | 1.94e-40 | 142 |
| Msa0322640 | AT1G72830.2 | 46.486 | 185 | 90 | 5 | 26 | 204 | 129 | 310 | 1.11e-38 | 137 |
| Msa0322640 | AT1G17590.3 | 48.837 | 172 | 64 | 6 | 32 | 192 | 133 | 291 | 1.20e-38 | 137 |
| Msa0322640 | AT1G17590.2 | 48.837 | 172 | 64 | 6 | 32 | 192 | 133 | 291 | 1.20e-38 | 137 |
| Msa0322640 | AT1G17590.4 | 48.837 | 172 | 64 | 6 | 32 | 192 | 133 | 291 | 1.20e-38 | 137 |
| Msa0322640 | AT1G17590.1 | 48.837 | 172 | 64 | 6 | 32 | 192 | 133 | 291 | 1.20e-38 | 137 |
| Msa0322640 | AT1G54160.1 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.38e-38 | 136 |
| Msa0322640 | AT3G14020.2 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.77e-35 | 127 |
| Msa0322640 | AT3G14020.1 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.77e-35 | 127 |
| Msa0322640 | AT1G30500.2 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 8.21e-34 | 120 |
| Msa0322640 | AT1G30500.1 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 8.74e-34 | 120 |
| Msa0322640 | AT2G34720.1 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.38e-33 | 120 |
| Msa0322640 | AT2G34720.2 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.59e-33 | 118 |
| Msa0322640 | AT2G34720.3 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.59e-33 | 118 |
| Msa0322640 | AT5G12840.4 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.87e-32 | 119 |
| Msa0322640 | AT5G12840.2 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.87e-32 | 119 |
| Msa0322640 | AT5G12840.5 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.06e-32 | 119 |
| Msa0322640 | AT5G12840.3 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.06e-32 | 119 |
| Msa0322640 | AT5G12840.1 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.06e-32 | 119 |
| Msa0322640 | AT3G20910.1 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.49e-30 | 115 |
| Msa0322640 | AT1G72830.3 | 41.304 | 184 | 75 | 5 | 26 | 204 | 129 | 284 | 6.99e-27 | 105 |
| Msa0322640 | AT5G06510.4 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 4.57e-25 | 97.4 |
| Msa0322640 | AT5G06510.7 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 4.57e-25 | 97.4 |
| Msa0322640 | AT5G06510.3 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.27e-24 | 97.4 |
| Msa0322640 | AT5G06510.1 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.41e-24 | 98.6 |
| Msa0322640 | AT5G06510.5 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.41e-24 | 98.6 |
| Msa0322640 | AT5G06510.2 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.41e-24 | 98.6 |
| Msa0322640 | AT5G06510.6 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.41e-24 | 98.6 |
| Msa0322640 | AT3G05690.1 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.67e-24 | 97.4 |
| Msa0322640 | AT3G05690.2 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 1.06e-23 | 97.4 |
Find 73 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATGTTTGTGATATTCT+TGG | 0.163497 | 2_4:-25781954 | Msa0322640:five_prime_UTR |
| TATTGCTTACACTTGTCTTT+TGG | 0.230753 | 2_4:-25780469 | Msa0322640:three_prime_UTR |
| TTTGTCACTGGTTCACATTC+TGG | 0.240648 | 2_4:-25780924 | Msa0322640:CDS |
| ACTTGTTGTTGGGTTGAAAT+TGG | 0.261072 | 2_4:+25783365 | None:intergenic |
| CCATCATTTGAGGCAACATT+TGG | 0.267754 | 2_4:+25781510 | None:intergenic |
| ACTAACGAACCAGCGAAAAT+TGG | 0.280722 | 2_4:+25781667 | None:intergenic |
| TGGCTTAATCACTTCGGTTT+CGG | 0.310800 | 2_4:-25780629 | Msa0322640:three_prime_UTR |
| CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2_4:-25780999 | Msa0322640:CDS |
| TACATGTGAAAGTAATAAAA+AGG | 0.321877 | 2_4:+25780504 | None:intergenic |
| GCGAAAATTGGATCACTATA+AGG | 0.333039 | 2_4:+25781679 | None:intergenic |
| TCTAAGCACCAAACAGCTTT+CGG | 0.357916 | 2_4:-25780961 | Msa0322640:CDS |
| CATCATTTGAGGCAACATTT+GGG | 0.363234 | 2_4:+25781511 | None:intergenic |
| CTTGTTGTTGGGTTGAAATT+GGG | 0.377337 | 2_4:+25783366 | None:intergenic |
| GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2_4:+25781824 | None:intergenic |
| AGAAGTGTTGTACTTGTTGT+TGG | 0.382513 | 2_4:+25783354 | None:intergenic |
| CCAAATGTTGCCTCAAATGA+TGG | 0.389646 | 2_4:-25781510 | Msa0322640:CDS |
| AGCAACGCGCTTCGGTTGTC+CGG | 0.405955 | 2_4:-25780683 | Msa0322640:CDS |
| TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2_4:-25780993 | Msa0322640:CDS |
| GATCAATATATAATTTGCTT+TGG | 0.413092 | 2_4:-25780404 | Msa0322640:three_prime_UTR |
| CCTAAAACTGAAACTGTTGC+CGG | 0.424457 | 2_4:+25780794 | None:intergenic |
| GAGAGAGTACCTTTGGGATC+TGG | 0.431328 | 2_4:+25783298 | None:intergenic |
| GGTGCTCCTCCGCCCATGTT+TGG | 0.433491 | 2_4:+25780741 | None:intergenic |
| CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2_4:+25781006 | None:intergenic |
| ATTAGACTCCGAAAGCTGTT+TGG | 0.442566 | 2_4:+25780953 | None:intergenic |
| GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2_4:+25780967 | None:intergenic |
| TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2_4:+25781026 | None:intergenic |
| TGCAGTGGAGGACTCACATT+TGG | 0.450885 | 2_4:-25780714 | Msa0322640:CDS |
| CGGAACAAAGCAACGCGCTT+CGG | 0.452314 | 2_4:-25780691 | Msa0322640:CDS |
| GAAGTGTTGTACTTGTTGTT+GGG | 0.454031 | 2_4:+25783355 | None:intergenic |
| CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2_4:-25781461 | Msa0322640:CDS |
| CAGCCAGAGCACATGTTTCT+CGG | 0.463872 | 2_4:-25780771 | Msa0322640:CDS |
| AATTTGCTTTGGTTTGAGCT+TGG | 0.466625 | 2_4:-25780393 | Msa0322640:three_prime_UTR |
| GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2_4:+25780845 | None:intergenic |
| CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2_4:-25781460 | Msa0322640:CDS |
| TCGGACAGGCAAATCATCCT+TGG | 0.503377 | 2_4:-25780649 | Msa0322640:three_prime_UTR |
| GAGTGACTTTCTATCTCTGA+AGG | 0.503496 | 2_4:+25780873 | None:intergenic |
| CCCCAGCAACAATTATCAAA+AGG | 0.507861 | 2_4:-25780901 | Msa0322640:CDS |
| CGGTGATAGTTTCATCGGAC+AGG | 0.509040 | 2_4:-25780663 | Msa0322640:exon |
| TTATACAAAATCATTCTCTC+AGG | 0.511347 | 2_4:-25781918 | Msa0322640:five_prime_UTR |
| TCTCGGAAACTCTCCAAACA+TGG | 0.515279 | 2_4:-25780754 | Msa0322640:CDS |
| TTTCCGAGAAACATGTGCTC+TGG | 0.517885 | 2_4:+25780768 | None:intergenic |
| AAGATCTAAAATTTAAGTAA+TGG | 0.520847 | 2_4:-25781893 | Msa0322640:five_prime_UTR |
| AGTAATGGCTGTGTTGTTGA+AGG | 0.525778 | 2_4:-25781878 | Msa0322640:five_prime_UTR |
| GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2_4:+25781845 | None:intergenic |
| CATCCTTGGCTTAATCACTT+CGG | 0.544205 | 2_4:-25780635 | Msa0322640:three_prime_UTR |
| TCTAATGCAGAATTTGTCAC+TGG | 0.556177 | 2_4:-25780936 | Msa0322640:CDS |
| CAAATGTTGCCTCAAATGAT+GGG | 0.557136 | 2_4:-25781509 | Msa0322640:CDS |
| AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2_4:-25781798 | Msa0322640:intron |
| AACTCTCCAAACATGGGCGG+AGG | 0.560530 | 2_4:-25780747 | Msa0322640:CDS |
| TTGTCCGGTGATAGTTTCAT+CGG | 0.561759 | 2_4:-25780668 | Msa0322640:exon |
| CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2_4:+25780827 | None:intergenic |
| GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2_4:+25781500 | None:intergenic |
| ATCATTTGAGGCAACATTTG+GGG | 0.571616 | 2_4:+25781512 | None:intergenic |
| AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2_4:+25781478 | None:intergenic |
| AAGCATAAGACGAACACGAC+AGG | 0.574065 | 2_4:+25781990 | None:intergenic |
| AGTGGAGGACTCACATTTGG+CGG | 0.581240 | 2_4:-25780711 | Msa0322640:CDS |
| CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2_4:+25781461 | None:intergenic |
| CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2_4:-25780827 | Msa0322640:CDS |
| AATACCATGGTATACTGAGA+AGG | 0.610675 | 2_4:-25781415 | Msa0322640:CDS |
| AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2_4:+25781817 | None:intergenic |
| CTGTCCGATGAAACTATCAC+CGG | 0.624235 | 2_4:+25780664 | None:intergenic |
| CTCGGAAACTCTCCAAACAT+GGG | 0.629942 | 2_4:-25780753 | Msa0322640:CDS |
| GGAGCACCACAATGCAGTGG+AGG | 0.632103 | 2_4:-25780726 | Msa0322640:CDS |
| GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2_4:-25781428 | Msa0322640:CDS |
| TCATACTTGCCAGATCCCAA+AGG | 0.645047 | 2_4:-25783307 | Msa0322640:intron |
| AAACCGAAGTGATTAAGCCA+AGG | 0.645864 | 2_4:+25780632 | None:intergenic |
| AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2_4:-25780990 | Msa0322640:CDS |
| GGAAACTCTCCAAACATGGG+CGG | 0.669109 | 2_4:-25780750 | Msa0322640:CDS |
| GGAGGAGCACCACAATGCAG+TGG | 0.675924 | 2_4:-25780729 | Msa0322640:CDS |
| GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2_4:+25781411 | None:intergenic |
| GTGAGTCCTCCACTGCATTG+TGG | 0.681382 | 2_4:+25780720 | None:intergenic |
| AAAACACTTACAACAGCATG+CGG | 0.692250 | 2_4:+25781634 | None:intergenic |
| ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2_4:-25781390 | Msa0322640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAAAAAACAAAAA+AGG | + | chr2_4:25780517-25780536 | None:intergenic | 10.0% |
| !! | AATCATAAATAATCTATATT+TGG | - | chr2_4:25780887-25780906 | Msa0322640:CDS | 10.0% |
| !! | ATCATAAATAATCTATATTT+GGG | - | chr2_4:25780888-25780907 | Msa0322640:CDS | 10.0% |
| !! | AAAAAACAAAAAAGGAAAAA+AGG | + | chr2_4:25780509-25780528 | None:intergenic | 15.0% |
| !! | TCATAAATAATCTATATTTG+GGG | - | chr2_4:25780889-25780908 | Msa0322640:CDS | 15.0% |
| !! | TTTCTTAGAAAACATAAATT+AGG | + | chr2_4:25781288-25781307 | None:intergenic | 15.0% |
| !!! | GTTTAAAATGTTTTATTGTT+TGG | - | chr2_4:25781385-25781404 | Msa0322640:CDS | 15.0% |
| !! | AAACTGAAAGAAATTTATTA+AGG | - | chr2_4:25781524-25781543 | Msa0322640:intron | 15.0% |
| !!! | AAGATCTAAAATTTAAGTAA+TGG | - | chr2_4:25781844-25781863 | Msa0322640:CDS | 15.0% |
| !!! | TTTCACATGTATTTTAAAAT+TGG | - | chr2_4:25783245-25783264 | Msa0322640:intron | 15.0% |
| !!! | CATGATTTAAGGTTAAATTT+TGG | - | chr2_4:25780596-25780615 | Msa0322640:three_prime_UTR | 20.0% |
| !! | CATAAATAATCTATATTTGG+GGG | - | chr2_4:25780890-25780909 | Msa0322640:CDS | 20.0% |
| !!! | AGTTTCAATTTTTTACTACT+TGG | - | chr2_4:25780936-25780955 | Msa0322640:CDS | 20.0% |
| !! | AATTCTCAAAATCTTAGAAA+GGG | + | chr2_4:25781099-25781118 | None:intergenic | 20.0% |
| !! | ATGAATTAGTGTGAATATTA+TGG | - | chr2_4:25781210-25781229 | Msa0322640:intron | 20.0% |
| !! | AGTAAACTATTCAATAAAAC+GGG | + | chr2_4:25782671-25782690 | None:intergenic | 20.0% |
| !! | GAGTAAACTATTCAATAAAA+CGG | + | chr2_4:25782672-25782691 | None:intergenic | 20.0% |
| !! | TACATGTGAAAGTAATAAAA+AGG | + | chr2_4:25783236-25783255 | None:intergenic | 20.0% |
| !!! | GATCAATATATAATTTGCTT+TGG | - | chr2_4:25783333-25783352 | Msa0322640:five_prime_UTR | 20.0% |
| !! | TCTTCTTTTAGCATGATTTA+AGG | - | chr2_4:25780585-25780604 | Msa0322640:three_prime_UTR | 25.0% |
| !!! | TTGTCTGTTTTGTTTTTTTG+AGG | - | chr2_4:25780678-25780697 | Msa0322640:exon | 25.0% |
| ! | TAGTTCATTCATACTAGAAT+TGG | + | chr2_4:25780722-25780741 | None:intergenic | 25.0% |
| ! | TCCTAGCATATTTGATTATT+TGG | - | chr2_4:25780778-25780797 | Msa0322640:CDS | 25.0% |
| ! | AATATTGAACTCAAGTTTCA+AGG | - | chr2_4:25780979-25780998 | Msa0322640:CDS | 25.0% |
| !!! | GTTTGATGATCCATTTTATA+TGG | - | chr2_4:25781013-25781032 | Msa0322640:CDS | 25.0% |
| !! | TATGGATTGAATACAAACTA+AGG | + | chr2_4:25781045-25781064 | None:intergenic | 25.0% |
| ! | CAATTCTCAAAATCTTAGAA+AGG | + | chr2_4:25781100-25781119 | None:intergenic | 25.0% |
| !!! | TCTAAGATTTTGAGAATTGT+TGG | - | chr2_4:25781101-25781120 | Msa0322640:intron | 25.0% |
| ! | TACAACAATGTATGTGAAAT+TGG | - | chr2_4:25781186-25781205 | Msa0322640:intron | 25.0% |
| ! | AATACTTGAGAAATAGTGAT+TGG | + | chr2_4:25781456-25781475 | None:intergenic | 25.0% |
| ! | TTTCTTTCAGTTTACTAACA+TGG | + | chr2_4:25781517-25781536 | None:intergenic | 25.0% |
| ! | GTATAGATATGTTCGTAATT+TGG | - | chr2_4:25781593-25781612 | Msa0322640:intron | 25.0% |
| !! | CACAAAATATGTGTTTCTAA+AGG | + | chr2_4:25781699-25781718 | None:intergenic | 25.0% |
| ! | TTCTATGTTTGTGATATTCT+TGG | - | chr2_4:25781783-25781802 | Msa0322640:intron | 25.0% |
| ! | TTATACAAAATCATTCTCTC+AGG | - | chr2_4:25781819-25781838 | Msa0322640:CDS | 25.0% |
| !!! | TGTTTTGCATTGACATAAAT+GGG | + | chr2_4:25782303-25782322 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCATTGACATAAA+TGG | + | chr2_4:25782304-25782323 | None:intergenic | 25.0% |
| !!! | GAACTTTACTTTTTTCATTC+AGG | - | chr2_4:25782415-25782434 | Msa0322640:intron | 25.0% |
| !! | CTACTAGTTTATATGCTATA+AGG | + | chr2_4:25782442-25782461 | None:intergenic | 25.0% |
| !! | TGATTTTATATAACCATCCA+AGG | - | chr2_4:25782534-25782553 | Msa0322640:intron | 25.0% |
| !! | GATTTTATATAACCATCCAA+GGG | - | chr2_4:25782535-25782554 | Msa0322640:intron | 25.0% |
| ! | CAAAATGTCATGTTATTACA+TGG | - | chr2_4:25782615-25782634 | Msa0322640:intron | 25.0% |
| !!! | TGGTGAAATTGTTATTTGAA+AGG | - | chr2_4:25782635-25782654 | Msa0322640:intron | 25.0% |
| !!! | GGTGAAATTGTTATTTGAAA+GGG | - | chr2_4:25782636-25782655 | Msa0322640:intron | 25.0% |
| AAAAAGGAAAAAAGGCAAAG+AGG | + | chr2_4:25780501-25780520 | None:intergenic | 30.0% | |
| TTGTTAGTTGAGATTTGGAA+AGG | - | chr2_4:25780648-25780667 | Msa0322640:three_prime_UTR | 30.0% | |
| GCCAAATAATCAAATATGCT+AGG | + | chr2_4:25780782-25780801 | None:intergenic | 30.0% | |
| TAAGATCAATGAGAAGTGAA+AGG | - | chr2_4:25780862-25780881 | Msa0322640:CDS | 30.0% | |
| CTTGAGTTCAATATTCTGTT+TGG | + | chr2_4:25780974-25780993 | None:intergenic | 30.0% | |
| ! | GATGATCCATTTTATATGGT+TGG | - | chr2_4:25781017-25781036 | Msa0322640:CDS | 30.0% |
| GTGTGAATATTATGGAGTTA+AGG | - | chr2_4:25781218-25781237 | Msa0322640:intron | 30.0% | |
| AGAAAACATAAATTAGGCCA+TGG | + | chr2_4:25781282-25781301 | None:intergenic | 30.0% | |
| ! | TCACTATTTCTCAAGTATTC+AGG | - | chr2_4:25781457-25781476 | Msa0322640:CDS | 30.0% |
| CGAAAATGAAGCTATTAACA+CGG | + | chr2_4:25781492-25781511 | None:intergenic | 30.0% | |
| !!! | GTTCGTAATTTGGTGTTTTA+TGG | - | chr2_4:25781603-25781622 | Msa0322640:intron | 30.0% |
| AGTTGATCATAATCACTCAA+TGG | - | chr2_4:25781939-25781958 | Msa0322640:five_prime_UTR | 30.0% | |
| GTATGTGAAACTTCTGTATT+TGG | - | chr2_4:25781961-25781980 | Msa0322640:five_prime_UTR | 30.0% | |
| AACTACTTCGTTACTAAAAG+TGG | + | chr2_4:25781999-25782018 | None:intergenic | 30.0% | |
| TTTCTCGTTACAATCTCAAA+AGG | + | chr2_4:25782510-25782529 | None:intergenic | 30.0% | |
| !! | TCCTTTTGATAATTGTTGCT+GGG | + | chr2_4:25782840-25782859 | None:intergenic | 30.0% |
| !! | TTCCTTTTGATAATTGTTGC+TGG | + | chr2_4:25782841-25782860 | None:intergenic | 30.0% |
| ! | TATTGCTTACACTTGTCTTT+TGG | - | chr2_4:25783268-25783287 | Msa0322640:intron | 30.0% |
| !!! | GTTTCTGCATGAAACTTTTT+TGG | - | chr2_4:25783305-25783324 | Msa0322640:intron | 30.0% |
| !! | ACTTGTTGTTGGGTTGAAAT+TGG | + | chr2_4:25780375-25780394 | None:intergenic | 35.0% |
| !! | GAAGTGTTGTACTTGTTGTT+GGG | + | chr2_4:25780385-25780404 | None:intergenic | 35.0% |
| !! | AGAAGTGTTGTACTTGTTGT+TGG | + | chr2_4:25780386-25780405 | None:intergenic | 35.0% |
| ! | TGGTGTTTTTCATTTGCATG+TGG | - | chr2_4:25780616-25780635 | Msa0322640:three_prime_UTR | 35.0% |
| TGAGGTTGTTAGTTGAGATT+TGG | - | chr2_4:25780643-25780662 | Msa0322640:three_prime_UTR | 35.0% | |
| GCTAGGATAGAAAAGAAAGA+AGG | + | chr2_4:25780765-25780784 | None:intergenic | 35.0% | |
| ! | AAGGCACCAACCATATAAAA+TGG | + | chr2_4:25781026-25781045 | None:intergenic | 35.0% |
| AGGGATCACAAAAAACTAGT+CGG | + | chr2_4:25781080-25781099 | None:intergenic | 35.0% | |
| ! | CTATTTCTCAAGTATTCAGG+CGG | - | chr2_4:25781460-25781479 | Msa0322640:CDS | 35.0% |
| TATTTCTCAAGTATTCAGGC+GGG | - | chr2_4:25781461-25781480 | Msa0322640:CDS | 35.0% | |
| AGGAAATAGACAAAGAGTGA+AGG | + | chr2_4:25781553-25781572 | None:intergenic | 35.0% | |
| TCAAATCAGCTAGTCACTTA+AGG | + | chr2_4:25781573-25781592 | None:intergenic | 35.0% | |
| GGATGATTCAAAGAGAGAAA+AGG | + | chr2_4:25781895-25781914 | None:intergenic | 35.0% | |
| AACTTGTGAGCAATTGAACT+CGG | + | chr2_4:25781923-25781942 | None:intergenic | 35.0% | |
| GCGAAAATTGGATCACTATA+AGG | + | chr2_4:25782061-25782080 | None:intergenic | 35.0% | |
| ! | TATAGTGATCCAATTTTCGC+TGG | - | chr2_4:25782061-25782080 | Msa0322640:intron | 35.0% |
| AAAACACTTACAACAGCATG+CGG | + | chr2_4:25782106-25782125 | None:intergenic | 35.0% | |
| !! | CAAGCATCAAAAAGTGCTAA+TGG | + | chr2_4:25782160-25782179 | None:intergenic | 35.0% |
| !! | CATTAGCACTTTTTGATGCT+TGG | - | chr2_4:25782158-25782177 | Msa0322640:intron | 35.0% |
| !!! | CTTTTTGATGCTTGGTTTTG+TGG | - | chr2_4:25782166-25782185 | Msa0322640:intron | 35.0% |
| ! | ATCATTTGAGGCAACATTTG+GGG | + | chr2_4:25782228-25782247 | None:intergenic | 35.0% |
| ! | CATCATTTGAGGCAACATTT+GGG | + | chr2_4:25782229-25782248 | None:intergenic | 35.0% |
| CAAATGTTGCCTCAAATGAT+GGG | - | chr2_4:25782228-25782247 | Msa0322640:intron | 35.0% | |
| GTCAATGCAAAACAATACCA+TGG | - | chr2_4:25782309-25782328 | Msa0322640:intron | 35.0% | |
| AATACCATGGTATACTGAGA+AGG | - | chr2_4:25782322-25782341 | Msa0322640:intron | 35.0% | |
| ! | ATCTCAAAAGGTAAGAGTGT+AGG | + | chr2_4:25782498-25782517 | None:intergenic | 35.0% |
| AATTCTACCACTTGTCATCA+CGG | + | chr2_4:25782576-25782595 | None:intergenic | 35.0% | |
| CTCTATTCAAAGCATGTTTG+TGG | + | chr2_4:25782734-25782753 | None:intergenic | 35.0% | |
| ! | CATGCTTTGAATAGAGTTAG+AGG | - | chr2_4:25782738-25782757 | Msa0322640:intron | 35.0% |
| TTGAATAGAGTTAGAGGATC+TGG | - | chr2_4:25782744-25782763 | Msa0322640:intron | 35.0% | |
| TCTAATGCAGAATTTGTCAC+TGG | - | chr2_4:25782801-25782820 | Msa0322640:intron | 35.0% | |
| !! | CCTTTTGATAATTGTTGCTG+GGG | + | chr2_4:25782839-25782858 | None:intergenic | 35.0% |
| GATGGAAGATATGTTATCTC+TGG | + | chr2_4:25782895-25782914 | None:intergenic | 35.0% | |
| !! | TCGGTGTTTTCATGGTAATT+TGG | - | chr2_4:25783127-25783146 | Msa0322640:intron | 35.0% |
| !! | AATTTGCTTTGGTTTGAGCT+TGG | - | chr2_4:25783344-25783363 | Msa0322640:five_prime_UTR | 35.0% |
| !! | GAAAGAGAGAGAGTACCTTT+GGG | + | chr2_4:25780448-25780467 | None:intergenic | 40.0% |
| !! | AGAAAGAGAGAGAGTACCTT+TGG | + | chr2_4:25780449-25780468 | None:intergenic | 40.0% |
| AAAAAGGCAAAGAGGCAAAG+AGG | + | chr2_4:25780493-25780512 | None:intergenic | 40.0% | |
| TCATTTGCATGTGGAGTTTG+AGG | - | chr2_4:25780625-25780644 | Msa0322640:three_prime_UTR | 40.0% | |
| ! | TCTAATCGAGTTGTTCTCCA+TGG | - | chr2_4:25781262-25781281 | Msa0322640:intron | 40.0% |
| !!! | ACAAAAGCTTTTTCGTGCGT+AGG | + | chr2_4:25781656-25781675 | None:intergenic | 40.0% |
| ! | TTTCTAAAGGATGCGAAGGA+AGG | + | chr2_4:25781686-25781705 | None:intergenic | 40.0% |
| ! | TGTGTTTCTAAAGGATGCGA+AGG | + | chr2_4:25781690-25781709 | None:intergenic | 40.0% |
| ! | AGTAATGGCTGTGTTGTTGA+AGG | - | chr2_4:25781859-25781878 | Msa0322640:exon | 40.0% |
| ! | AGTTATTGTCGTCCGTTTTC+AGG | - | chr2_4:25782015-25782034 | Msa0322640:intron | 40.0% |
| ACTAACGAACCAGCGAAAAT+TGG | + | chr2_4:25782073-25782092 | None:intergenic | 40.0% | |
| ! | CCATCATTTGAGGCAACATT+TGG | + | chr2_4:25782230-25782249 | None:intergenic | 40.0% |
| CCAAATGTTGCCTCAAATGA+TGG | - | chr2_4:25782227-25782246 | Msa0322640:intron | 40.0% | |
| GATGCTAATCCCATCATTTG+AGG | + | chr2_4:25782240-25782259 | None:intergenic | 40.0% | |
| ! | AAGTGGTAATGCAACTCTAG+TGG | + | chr2_4:25782262-25782281 | None:intergenic | 40.0% |
| CACTTGATCTTGCACAAGAT+GGG | - | chr2_4:25782277-25782296 | Msa0322640:intron | 40.0% | |
| ! | GTAGCAAAGTTTTTCATGCG+TGG | - | chr2_4:25782458-25782477 | Msa0322640:intron | 40.0% |
| ATTCTACCACTTGTCATCAC+GGG | + | chr2_4:25782575-25782594 | None:intergenic | 40.0% | |
| AATAGAGTTAGAGGATCTGG+TGG | - | chr2_4:25782747-25782766 | Msa0322640:intron | 40.0% | |
| !! | GCTGTTTGGTGCTTAGAAAT+CGG | + | chr2_4:25782773-25782792 | None:intergenic | 40.0% |
| TCTAAGCACCAAACAGCTTT+CGG | - | chr2_4:25782776-25782795 | Msa0322640:intron | 40.0% | |
| ATTAGACTCCGAAAGCTGTT+TGG | + | chr2_4:25782787-25782806 | None:intergenic | 40.0% | |
| !! | TTTGTCACTGGTTCACATTC+TGG | - | chr2_4:25782813-25782832 | Msa0322640:intron | 40.0% |
| CCCCAGCAACAATTATCAAA+AGG | - | chr2_4:25782836-25782855 | Msa0322640:intron | 40.0% | |
| GAGTGACTTTCTATCTCTGA+AGG | + | chr2_4:25782867-25782886 | None:intergenic | 40.0% | |
| CCTAAAACTGAAACTGTTGC+CGG | + | chr2_4:25782946-25782965 | None:intergenic | 40.0% | |
| TTGTCCGGTGATAGTTTCAT+CGG | - | chr2_4:25783069-25783088 | Msa0322640:intron | 40.0% | |
| CATCCTTGGCTTAATCACTT+CGG | - | chr2_4:25783102-25783121 | Msa0322640:intron | 40.0% | |
| AAACCGAAGTGATTAAGCCA+AGG | + | chr2_4:25783108-25783127 | None:intergenic | 40.0% | |
| TGGCTTAATCACTTCGGTTT+CGG | - | chr2_4:25783108-25783127 | Msa0322640:intron | 40.0% | |
| ! | CTTACACTTGTCTTTTGGAC+TGG | - | chr2_4:25783273-25783292 | Msa0322640:intron | 40.0% |
| !! | ACTTGTCTTTTGGACTGGAT+TGG | - | chr2_4:25783278-25783297 | Msa0322640:intron | 40.0% |
| TCATACTTGCCAGATCCCAA+AGG | - | chr2_4:25780430-25780449 | Msa0322640:three_prime_UTR | 45.0% | |
| AGTCGGCTGACATCTTCATA+TGG | + | chr2_4:25781063-25781082 | None:intergenic | 45.0% | |
| AAGCATAAGACGAACACGAC+AGG | + | chr2_4:25781750-25781769 | None:intergenic | 45.0% | |
| GAGCAATTGAACTCGGTATC+AGG | + | chr2_4:25781916-25781935 | None:intergenic | 45.0% | |
| CATGAGTCTGAGCCTGAAAA+CGG | + | chr2_4:25782030-25782049 | None:intergenic | 45.0% | |
| CCATCTTGTGCAAGATCAAG+TGG | + | chr2_4:25782279-25782298 | None:intergenic | 45.0% | |
| CCACTTGATCTTGCACAAGA+TGG | - | chr2_4:25782276-25782295 | Msa0322640:intron | 45.0% | |
| ACAATCACGAGCTAAGCTTG+AGG | - | chr2_4:25782347-25782366 | Msa0322640:intron | 45.0% | |
| ! | GAAACTTGTTCACCCTTGGA+TGG | + | chr2_4:25782550-25782569 | None:intergenic | 45.0% |
| TGGCGAGATTCGTGAAGATA+TGG | + | chr2_4:25782714-25782733 | None:intergenic | 45.0% | |
| CCATCACAAGTTGTTCCGAT+CGG | - | chr2_4:25782910-25782929 | Msa0322640:intron | 45.0% | |
| ! | TCCGATCGGACATGTTTTTC+CGG | - | chr2_4:25782924-25782943 | Msa0322640:intron | 45.0% |
| ! | CCGGCAACAGTTTCAGTTTT+AGG | - | chr2_4:25782943-25782962 | Msa0322640:intron | 45.0% |
| TTTCCGAGAAACATGTGCTC+TGG | + | chr2_4:25782972-25782991 | None:intergenic | 45.0% | |
| TCTCGGAAACTCTCCAAACA+TGG | - | chr2_4:25782983-25783002 | Msa0322640:intron | 45.0% | |
| CTCGGAAACTCTCCAAACAT+GGG | - | chr2_4:25782984-25783003 | Msa0322640:intron | 45.0% | |
| CTGTCCGATGAAACTATCAC+CGG | + | chr2_4:25783076-25783095 | None:intergenic | 45.0% | |
| !!! | CTTCGGTTTCGGTGTTTTCA+TGG | - | chr2_4:25783119-25783138 | Msa0322640:intron | 45.0% |
| !! | GAGAGAGTACCTTTGGGATC+TGG | + | chr2_4:25780442-25780461 | None:intergenic | 50.0% |
| GTCGCCTTCTCAGTATACCA+TGG | + | chr2_4:25782329-25782348 | None:intergenic | 50.0% | |
| ! | GGAGGAAACTTGTTCACCCT+TGG | + | chr2_4:25782554-25782573 | None:intergenic | 50.0% |
| TTTCCTCCCGTGATGACAAG+TGG | - | chr2_4:25782566-25782585 | Msa0322640:intron | 50.0% | |
| CCGATCGGAACAACTTGTGA+TGG | + | chr2_4:25782913-25782932 | None:intergenic | 50.0% | |
| GCCGGAAAAACATGTCCGAT+CGG | + | chr2_4:25782928-25782947 | None:intergenic | 50.0% | |
| CAGCCAGAGCACATGTTTCT+CGG | - | chr2_4:25782966-25782985 | Msa0322640:intron | 50.0% | |
| GGAAACTCTCCAAACATGGG+CGG | - | chr2_4:25782987-25783006 | Msa0322640:intron | 50.0% | |
| TGCAGTGGAGGACTCACATT+TGG | - | chr2_4:25783023-25783042 | Msa0322640:intron | 50.0% | |
| AGTGGAGGACTCACATTTGG+CGG | - | chr2_4:25783026-25783045 | Msa0322640:intron | 50.0% | |
| CGGTGATAGTTTCATCGGAC+AGG | - | chr2_4:25783074-25783093 | Msa0322640:intron | 50.0% | |
| TCGGACAGGCAAATCATCCT+TGG | - | chr2_4:25783088-25783107 | Msa0322640:intron | 50.0% | |
| CTACCACTTGTCATCACGGG+AGG | + | chr2_4:25782572-25782591 | None:intergenic | 55.0% | |
| AACTCTCCAAACATGGGCGG+AGG | - | chr2_4:25782990-25783009 | Msa0322640:intron | 55.0% | |
| GTGAGTCCTCCACTGCATTG+TGG | + | chr2_4:25783020-25783039 | None:intergenic | 55.0% | |
| CGGAACAAAGCAACGCGCTT+CGG | - | chr2_4:25783046-25783065 | Msa0322640:intron | 55.0% | |
| !! | GGAGGAGCACCACAATGCAG+TGG | - | chr2_4:25783008-25783027 | Msa0322640:intron | 60.0% |
| ! | GGAGCACCACAATGCAGTGG+AGG | - | chr2_4:25783011-25783030 | Msa0322640:intron | 60.0% |
| AGCAACGCGCTTCGGTTGTC+CGG | - | chr2_4:25783054-25783073 | Msa0322640:intron | 60.0% | |
| GGTGCTCCTCCGCCCATGTT+TGG | + | chr2_4:25782999-25783018 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 25780372 | 25783387 | 25780372 | ID=Msa0322640;Name=Msa0322640 |
| chr2_4 | mRNA | 25780372 | 25783387 | 25780372 | ID=Msa0322640-mRNA-1;Parent=Msa0322640;Name=Msa0322640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=234|1|1|1|0.75|0.6|5|308|233 |
| chr2_4 | exon | 25780372 | 25781048 | 25780372 | ID=Msa0322640-mRNA-1:exon:9041;Parent=Msa0322640-mRNA-1 |
| chr2_4 | exon | 25781361 | 25781540 | 25781361 | ID=Msa0322640-mRNA-1:exon:9040;Parent=Msa0322640-mRNA-1 |
| chr2_4 | exon | 25781645 | 25781722 | 25781645 | ID=Msa0322640-mRNA-1:exon:9039;Parent=Msa0322640-mRNA-1 |
| chr2_4 | exon | 25781799 | 25782027 | 25781799 | ID=Msa0322640-mRNA-1:exon:9038;Parent=Msa0322640-mRNA-1 |
| chr2_4 | exon | 25783308 | 25783387 | 25783308 | ID=Msa0322640-mRNA-1:exon:9037;Parent=Msa0322640-mRNA-1 |
| chr2_4 | five_prime_UTR | 25783308 | 25783387 | 25783308 | ID=Msa0322640-mRNA-1:five_prime_utr;Parent=Msa0322640-mRNA-1 |
| chr2_4 | five_prime_UTR | 25781874 | 25782027 | 25781874 | ID=Msa0322640-mRNA-1:five_prime_utr;Parent=Msa0322640-mRNA-1 |
| chr2_4 | CDS | 25781799 | 25781873 | 25781799 | ID=Msa0322640-mRNA-1:cds;Parent=Msa0322640-mRNA-1 |
| chr2_4 | CDS | 25781645 | 25781722 | 25781645 | ID=Msa0322640-mRNA-1:cds;Parent=Msa0322640-mRNA-1 |
| chr2_4 | CDS | 25781361 | 25781540 | 25781361 | ID=Msa0322640-mRNA-1:cds;Parent=Msa0322640-mRNA-1 |
| chr2_4 | CDS | 25780680 | 25781048 | 25780680 | ID=Msa0322640-mRNA-1:cds;Parent=Msa0322640-mRNA-1 |
| chr2_4 | three_prime_UTR | 25780372 | 25780679 | 25780372 | ID=Msa0322640-mRNA-1:three_prime_utr;Parent=Msa0322640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
