Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322800 | KEH37561.1 | 94.262 | 366 | 10 | 4 | 1 | 365 | 1 | 356 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322800 | sp|A2XA73|GRF1_ORYSI | 35.589 | 399 | 198 | 13 | 6 | 365 | 17 | 395 | 8.44e-58 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0322800 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322800 | MtrunA17_Chr2g0300511 | 94.231 | 364 | 10 | 4 | 1 | 363 | 1 | 354 | 0.0 | 691 |
| Msa0322800 | MtrunA17_Chr4g0070591 | 63.351 | 382 | 95 | 13 | 3 | 361 | 5 | 364 | 2.59e-145 | 416 |
| Msa0322800 | MtrunA17_Chr8g0343881 | 45.272 | 349 | 157 | 12 | 3 | 334 | 7 | 338 | 2.05e-70 | 224 |
| Msa0322800 | MtrunA17_Chr4g0021261 | 40.227 | 353 | 143 | 13 | 7 | 348 | 25 | 320 | 1.46e-59 | 195 |
| Msa0322800 | MtrunA17_Chr1g0152191 | 57.391 | 115 | 49 | 0 | 5 | 119 | 142 | 256 | 7.59e-41 | 152 |
| Msa0322800 | MtrunA17_Chr5g0409471 | 60.177 | 113 | 29 | 2 | 7 | 119 | 16 | 112 | 1.32e-40 | 145 |
| Msa0322800 | MtrunA17_Chr7g0265931 | 54.198 | 131 | 45 | 4 | 4 | 125 | 68 | 192 | 2.22e-35 | 133 |
| Msa0322800 | MtrunA17_Chr3g0127641 | 48.246 | 114 | 37 | 3 | 7 | 120 | 112 | 203 | 1.60e-27 | 113 |
| Msa0322800 | MtrunA17_Chr8g0351521 | 38.608 | 158 | 72 | 4 | 3 | 158 | 50 | 184 | 2.75e-23 | 100 |
| Msa0322800 | MtrunA17_Chr8g0351521 | 47.761 | 67 | 34 | 1 | 75 | 140 | 302 | 368 | 6.94e-13 | 69.3 |
| Msa0322800 | MtrunA17_Chr8g0351291 | 64.103 | 39 | 14 | 0 | 75 | 113 | 51 | 89 | 1.13e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322800 | AT3G13960.1 | 71.681 | 113 | 28 | 2 | 7 | 119 | 16 | 124 | 1.93e-55 | 187 |
| Msa0322800 | AT2G06200.1 | 65.000 | 120 | 35 | 2 | 5 | 117 | 4 | 123 | 2.11e-47 | 161 |
| Msa0322800 | AT2G06200.2 | 65.000 | 120 | 35 | 2 | 5 | 117 | 43 | 162 | 2.50e-47 | 162 |
| Msa0322800 | AT4G37740.1 | 58.974 | 117 | 40 | 4 | 5 | 120 | 162 | 271 | 2.18e-39 | 147 |
| Msa0322800 | AT2G36400.1 | 56.198 | 121 | 50 | 2 | 8 | 127 | 77 | 195 | 9.87e-37 | 137 |
| Msa0322800 | AT3G52910.1 | 55.172 | 116 | 44 | 4 | 8 | 119 | 83 | 194 | 1.81e-33 | 128 |
| Msa0322800 | AT2G22840.1 | 53.448 | 116 | 46 | 2 | 5 | 119 | 131 | 239 | 2.52e-33 | 130 |
| Msa0322800 | AT2G06200.3 | 92.157 | 51 | 2 | 1 | 69 | 117 | 1 | 51 | 2.77e-26 | 103 |
| Msa0322800 | AT5G53660.1 | 49.123 | 114 | 37 | 3 | 6 | 119 | 58 | 150 | 6.40e-26 | 107 |
| Msa0322800 | AT4G24150.3 | 44.444 | 117 | 55 | 2 | 8 | 119 | 112 | 223 | 1.48e-23 | 101 |
| Msa0322800 | AT4G24150.2 | 44.444 | 117 | 55 | 2 | 8 | 119 | 150 | 261 | 2.12e-23 | 101 |
| Msa0322800 | AT4G24150.1 | 40.288 | 139 | 54 | 3 | 8 | 119 | 150 | 286 | 2.49e-23 | 101 |
| Msa0322800 | AT2G45480.2 | 39.669 | 121 | 56 | 3 | 3 | 116 | 19 | 129 | 3.94e-18 | 84.3 |
| Msa0322800 | AT2G45480.1 | 39.669 | 121 | 56 | 3 | 3 | 116 | 17 | 127 | 1.73e-17 | 84.0 |
| Msa0322800 | AT2G45480.1 | 60.417 | 48 | 18 | 1 | 72 | 119 | 301 | 347 | 1.18e-12 | 69.3 |
| Msa0322800 | AT2G45480.3 | 39.669 | 121 | 56 | 3 | 3 | 116 | 19 | 129 | 1.78e-17 | 84.0 |
| Msa0322800 | AT2G45480.3 | 60.417 | 48 | 18 | 1 | 72 | 119 | 303 | 349 | 1.18e-12 | 69.3 |
Find 70 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGGATTGTTGCAAAT+TGG | 0.210488 | 2_4:+26318724 | None:intergenic |
| TTCTTTGATAGTACTGTTCT+AGG | 0.239249 | 2_4:-26317462 | Msa0322800:three_prime_UTR |
| TGCCATTGTGATGGAGTAAA+AGG | 0.243712 | 2_4:+26319896 | None:intergenic |
| CTTTCACAGTATTTAGAATC+TGG | 0.307376 | 2_4:+26318962 | None:intergenic |
| ATTTACAAGTACATGGCTTC+TGG | 0.322552 | 2_4:-26319851 | Msa0322800:CDS |
| GAGAGATCAATGGCTTGATT+TGG | 0.343166 | 2_4:-26317614 | Msa0322800:CDS |
| CTCAGAATAACACTGATTAC+AGG | 0.358203 | 2_4:-26318604 | Msa0322800:intron |
| ATGGTTAGTCATCATTTATC+AGG | 0.365999 | 2_4:-26317376 | Msa0322800:three_prime_UTR |
| TTTGATGAATGGCCACATAA+AGG | 0.368324 | 2_4:-26317637 | Msa0322800:CDS |
| AACTATCTGCAAATGGGTTT+AGG | 0.375973 | 2_4:-26319061 | Msa0322800:CDS |
| GCATTCTTCAAAGAACCTTC+TGG | 0.390445 | 2_4:-26317880 | Msa0322800:CDS |
| ATTAATAATGCTTCATCACT+TGG | 0.397780 | 2_4:-26318857 | Msa0322800:CDS |
| TCAACTTTGTCATCTGGTAT+TGG | 0.398620 | 2_4:-26318680 | Msa0322800:CDS |
| ACTTTACTAGCCACGATTCT+CGG | 0.402005 | 2_4:+26317326 | None:intergenic |
| GAAGAACAGATGGAAAGAAA+TGG | 0.403362 | 2_4:-26319006 | Msa0322800:CDS |
| ATAATAGAATAGAATTGAAT+AGG | 0.408799 | 2_4:+26319993 | None:intergenic |
| TTGATGAATGGCCACATAAA+GGG | 0.413091 | 2_4:-26317636 | Msa0322800:CDS |
| AGGAAGGAAGTGGAACCATT+AGG | 0.419979 | 2_4:+26320096 | None:intergenic |
| CTTTACTAGCCACGATTCTC+GGG | 0.420240 | 2_4:+26317327 | None:intergenic |
| GAAGAATTAGTTAATGATGC+AGG | 0.421290 | 2_4:+26318809 | None:intergenic |
| TTCATCGCTTCTTTGATGAA+TGG | 0.422547 | 2_4:-26317648 | Msa0322800:CDS |
| TCAAGGTCAACTTTGTCATC+TGG | 0.430096 | 2_4:-26318686 | Msa0322800:CDS |
| TGTATCCTCATACAACTTCA+AGG | 0.438634 | 2_4:-26318703 | Msa0322800:CDS |
| CAGTGTTGGTGTTGTTGACT+AGG | 0.440991 | 2_4:+26319752 | None:intergenic |
| GGAAGTGGAACCATTAGGTT+AGG | 0.441836 | 2_4:+26320101 | None:intergenic |
| GATGGATAAAATAAAACTAA+TGG | 0.442644 | 2_4:+26320150 | None:intergenic |
| AAGCTTCTCTGCTTCATCAA+TGG | 0.443492 | 2_4:-26317842 | Msa0322800:CDS |
| CTTCTACATCTACCTGGCTC+TGG | 0.445022 | 2_4:+26319025 | None:intergenic |
| TGGATGGAACTATCTGCAAA+TGG | 0.447963 | 2_4:-26319068 | Msa0322800:CDS |
| GATTCTGTAACCTAACCTAA+TGG | 0.456910 | 2_4:-26320111 | Msa0322800:five_prime_UTR |
| TCGATTTCGATTCCATCCTC+TGG | 0.461357 | 2_4:-26317565 | Msa0322800:CDS |
| CATAGAGATTCATATCCATT+CGG | 0.462117 | 2_4:-26317491 | Msa0322800:three_prime_UTR |
| CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 2_4:+26318918 | None:intergenic |
| TATCCTCAAAATTCTTGCTA+TGG | 0.474491 | 2_4:-26318749 | Msa0322800:CDS |
| CATTGATCTCTCCCTTTATG+TGG | 0.488068 | 2_4:+26317625 | None:intergenic |
| GTTGACCTTGAAGTTGTATG+AGG | 0.489086 | 2_4:+26318698 | None:intergenic |
| AAAAGGAACAGGTATGTGTA+TGG | 0.489899 | 2_4:-26317928 | Msa0322800:intron |
| AGTTGTATGAGGATACATAA+AGG | 0.504350 | 2_4:+26318709 | None:intergenic |
| GTATTTCTAGAAGTGAAAGT+TGG | 0.508645 | 2_4:+26317532 | None:intergenic |
| GGATGGAACTATCTGCAAAT+GGG | 0.512539 | 2_4:-26319067 | Msa0322800:CDS |
| TCTTGTTCTTGTGTGTAAGA+TGG | 0.516895 | 2_4:+26320132 | None:intergenic |
| CATCAATGGAACATGATCCT+TGG | 0.521187 | 2_4:-26317828 | Msa0322800:CDS |
| AGCTCTTATTTACAAGTACA+TGG | 0.521532 | 2_4:-26319858 | Msa0322800:CDS |
| CAAAGAAGTAGAAGATGATG+AGG | 0.529690 | 2_4:+26317777 | None:intergenic |
| TAGAATTGAATAGGTGTTGG+TGG | 0.530456 | 2_4:+26320002 | None:intergenic |
| CACATAAAGGGAGAGATCAA+TGG | 0.535742 | 2_4:-26317624 | Msa0322800:CDS |
| ATCAAAGAAATTGAGCCGAA+TGG | 0.551716 | 2_4:+26317476 | None:intergenic |
| GTAAGTGGTGTTAGTTGCCA+AGG | 0.556427 | 2_4:+26317811 | None:intergenic |
| CTATGAAAGTTCAATTACCA+TGG | 0.563963 | 2_4:+26317509 | None:intergenic |
| GGTAGATGTAGAAGAACAGA+TGG | 0.565829 | 2_4:-26319016 | Msa0322800:CDS |
| TCAAGTTCTTGCCATTGTGA+TGG | 0.567945 | 2_4:+26319887 | None:intergenic |
| GAATAGAATTGAATAGGTGT+TGG | 0.568869 | 2_4:+26319999 | None:intergenic |
| AAGAATTAGTTAATGATGCA+GGG | 0.570085 | 2_4:+26318810 | None:intergenic |
| GAGGAAGAACTCATAGTAAG+TGG | 0.573735 | 2_4:+26317796 | None:intergenic |
| TCTGTTCTTCTACATCTACC+TGG | 0.588963 | 2_4:+26319019 | None:intergenic |
| GCTGCTTTGAGTGTTCACTA+AGG | 0.590411 | 2_4:+26317698 | None:intergenic |
| AGAGTTGCTATCAAGAAACA+AGG | 0.594941 | 2_4:+26318631 | None:intergenic |
| GGAAAATCATGACCAGAGGA+TGG | 0.595251 | 2_4:+26317553 | None:intergenic |
| TTCATAGTACTGCTACCAGA+AGG | 0.597595 | 2_4:+26317865 | None:intergenic |
| TTCACTTCTAGAAATACCCA+TGG | 0.600872 | 2_4:-26317526 | Msa0322800:CDS |
| TGTGAAAGACACATGCATAG+AGG | 0.603131 | 2_4:-26318947 | Msa0322800:CDS |
| TATGAAAGTTCAATTACCAT+GGG | 0.607834 | 2_4:+26317510 | None:intergenic |
| TAGTACTAGAGAGAAAGAGT+AGG | 0.627757 | 2_4:+26320045 | None:intergenic |
| GGAGAAAGGACTTACAGTGT+TGG | 0.629687 | 2_4:+26319738 | None:intergenic |
| AATCGAAATCGATAATTGAG+TGG | 0.635985 | 2_4:+26317576 | None:intergenic |
| TTACATCGTGAATTCGAACA+TGG | 0.636750 | 2_4:-26317395 | Msa0322800:three_prime_UTR |
| ATTTGAACACCCGAGAATCG+TGG | 0.637965 | 2_4:-26317336 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 2_4:-26318921 | Msa0322800:CDS |
| AGTTGGAAAATCATGACCAG+AGG | 0.663324 | 2_4:+26317549 | None:intergenic |
| GAGTTGCTATCAAGAAACAA+GGG | 0.701728 | 2_4:+26318632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATTTTTTTGTTAG+AGG | + | chr2_4:26317461-26317480 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTTAAACAAATT+TGG | - | chr2_4:26318024-26318043 | Msa0322800:intron | 10.0% |
| !! | ATAATAGAATAGAATTGAAT+AGG | + | chr2_4:26317544-26317563 | None:intergenic | 15.0% |
| !! | ACAGTAAACATATAAATATA+TGG | + | chr2_4:26317820-26317839 | None:intergenic | 15.0% |
| !! | TATAGAGATAATTTAGTTAA+AGG | - | chr2_4:26318372-26318391 | Msa0322800:intron | 15.0% |
| !! | AAAAAAAAAAGAGATCAAAA+TGG | - | chr2_4:26319489-26319508 | Msa0322800:intron | 15.0% |
| !! | GATGGATAAAATAAAACTAA+TGG | + | chr2_4:26317387-26317406 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTTAGAGGA+AGG | + | chr2_4:26317457-26317476 | None:intergenic | 20.0% |
| !! | ACATATAAATATATGGAGAA+AGG | + | chr2_4:26317813-26317832 | None:intergenic | 20.0% |
| !! | AACTATGTATACATAGTTTA+TGG | + | chr2_4:26317856-26317875 | None:intergenic | 20.0% |
| !! | TAAGATGTATACCATATAAA+AGG | + | chr2_4:26318163-26318182 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTTTTTCAGT+TGG | - | chr2_4:26318446-26318465 | Msa0322800:intron | 20.0% |
| !!! | TTTTGATAAATAGTCGTTTT+TGG | - | chr2_4:26318992-26319011 | Msa0322800:CDS | 20.0% |
| !!! | TTTTTTGTTAGTTAGTTTGT+TGG | - | chr2_4:26319108-26319127 | Msa0322800:intron | 20.0% |
| !! | GAAATTACAAAAAGAATCAA+CGG | + | chr2_4:26319405-26319424 | None:intergenic | 20.0% |
| !! | GATACATTCAAAGAATATAA+TGG | - | chr2_4:26319425-26319444 | Msa0322800:intron | 20.0% |
| !!! | TATACCATATAAAAGGTGTT+AGG | + | chr2_4:26318156-26318175 | None:intergenic | 25.0% |
| ! | TACTAACTTCTTTACTATTG+TGG | - | chr2_4:26318272-26318291 | Msa0322800:intron | 25.0% |
| ! | AAAAAACCAAAATAACCCTT+TGG | + | chr2_4:26318441-26318460 | None:intergenic | 25.0% |
| ! | ATTAATAATGCTTCATCACT+TGG | - | chr2_4:26318677-26318696 | Msa0322800:CDS | 25.0% |
| ! | AAGAATTAGTTAATGATGCA+GGG | + | chr2_4:26318727-26318746 | None:intergenic | 25.0% |
| !!! | AAGAATTTTGAGGATAGTTT+TGG | + | chr2_4:26318781-26318800 | None:intergenic | 25.0% |
| !! | ATAGTGTTTGAACTTTGTTT+CGG | - | chr2_4:26318967-26318986 | Msa0322800:CDS | 25.0% |
| !!! | TTTGGAGTAAATAGTCATTT+TGG | - | chr2_4:26319010-26319029 | Msa0322800:CDS | 25.0% |
| ! | TTTGAATTACTAACAAAGAC+AGG | - | chr2_4:26319139-26319158 | Msa0322800:intron | 25.0% |
| !! | CTTCAAGTAAATAGTCATTT+TGG | - | chr2_4:26319282-26319301 | Msa0322800:intron | 25.0% |
| !! | GTTTTCTTCCTTTGTAAAAA+AGG | - | chr2_4:26319589-26319608 | Msa0322800:intron | 25.0% |
| ! | TATGAAAGTTCAATTACCAT+GGG | + | chr2_4:26320027-26320046 | None:intergenic | 25.0% |
| GAATAGAATTGAATAGGTGT+TGG | + | chr2_4:26317538-26317557 | None:intergenic | 30.0% | |
| ! | AGCTCTTATTTACAAGTACA+TGG | - | chr2_4:26317676-26317695 | Msa0322800:CDS | 30.0% |
| TACCATCAGAAAAAGCTATT+TGG | - | chr2_4:26317733-26317752 | Msa0322800:CDS | 30.0% | |
| !! | ATCCAAATAGCTTTTTCTGA+TGG | + | chr2_4:26317738-26317757 | None:intergenic | 30.0% |
| TATACATCTTAGTGTGTGTT+TGG | - | chr2_4:26318172-26318191 | Msa0322800:intron | 30.0% | |
| !!! | TCTTTTAGAAAGTGTCTGTT+TGG | + | chr2_4:26318343-26318362 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTTTTCAGTTGGA+TGG | - | chr2_4:26318450-26318469 | Msa0322800:intron | 30.0% |
| ! | CTTTCACAGTATTTAGAATC+TGG | + | chr2_4:26318575-26318594 | None:intergenic | 30.0% |
| GAAGAATTAGTTAATGATGC+AGG | + | chr2_4:26318728-26318747 | None:intergenic | 30.0% | |
| TATCCTCAAAATTCTTGCTA+TGG | - | chr2_4:26318785-26318804 | Msa0322800:CDS | 30.0% | |
| CATAAAGGATTGTTGCAAAT+TGG | + | chr2_4:26318813-26318832 | None:intergenic | 30.0% | |
| AGTTGTATGAGGATACATAA+AGG | + | chr2_4:26318828-26318847 | None:intergenic | 30.0% | |
| GAAACAAAGTTCAAACACTA+TGG | + | chr2_4:26318968-26318987 | None:intergenic | 30.0% | |
| TGACATTGTCTTACACATTT+CGG | - | chr2_4:26319205-26319224 | Msa0322800:intron | 30.0% | |
| CACTCATTAAGAGATCAAAA+TGG | - | chr2_4:26319455-26319474 | Msa0322800:intron | 30.0% | |
| ! | GAATTGTGATTGATTCTCTT+TGG | - | chr2_4:26319561-26319580 | Msa0322800:intron | 30.0% |
| TTCCTTTGTAAAAAAGGAAC+AGG | - | chr2_4:26319595-26319614 | Msa0322800:intron | 30.0% | |
| !!! | TACCTGTTCCTTTTTTACAA+AGG | + | chr2_4:26319600-26319619 | None:intergenic | 30.0% |
| AATCGAAATCGATAATTGAG+TGG | + | chr2_4:26319961-26319980 | None:intergenic | 30.0% | |
| !! | GTATTTCTAGAAGTGAAAGT+TGG | + | chr2_4:26320005-26320024 | None:intergenic | 30.0% |
| CTATGAAAGTTCAATTACCA+TGG | + | chr2_4:26320028-26320047 | None:intergenic | 30.0% | |
| CATAGAGATTCATATCCATT+CGG | - | chr2_4:26320043-26320062 | Msa0322800:five_prime_UTR | 30.0% | |
| ! | TTCTTTGATAGTACTGTTCT+AGG | - | chr2_4:26320072-26320091 | Msa0322800:five_prime_UTR | 30.0% |
| ! | ATGGTTAGTCATCATTTATC+AGG | - | chr2_4:26320158-26320177 | Msa0322800:five_prime_UTR | 30.0% |
| TCTTGTTCTTGTGTGTAAGA+TGG | + | chr2_4:26317405-26317424 | None:intergenic | 35.0% | |
| GATTCTGTAACCTAACCTAA+TGG | - | chr2_4:26317423-26317442 | Msa0322800:three_prime_UTR | 35.0% | |
| ! | TTTTTGTTAGAGGAAGGAAG+TGG | + | chr2_4:26317451-26317470 | None:intergenic | 35.0% |
| TAGTACTAGAGAGAAAGAGT+AGG | + | chr2_4:26317492-26317511 | None:intergenic | 35.0% | |
| !! | TAGAATTGAATAGGTGTTGG+TGG | + | chr2_4:26317535-26317554 | None:intergenic | 35.0% |
| ! | TTCCTTTTACTCCATCACAA+TGG | - | chr2_4:26317636-26317655 | Msa0322800:CDS | 35.0% |
| ATTTACAAGTACATGGCTTC+TGG | - | chr2_4:26317683-26317702 | Msa0322800:CDS | 35.0% | |
| ATGGTAAAAAGAAGATCAGG+TGG | + | chr2_4:26317719-26317738 | None:intergenic | 35.0% | |
| CTGATGGTAAAAAGAAGATC+AGG | + | chr2_4:26317722-26317741 | None:intergenic | 35.0% | |
| GGAAAAAGTCTTGAAGAAAG+AGG | + | chr2_4:26317764-26317783 | None:intergenic | 35.0% | |
| !! | TATAAAAGGTGTTAGGTCAG+TGG | + | chr2_4:26318149-26318168 | None:intergenic | 35.0% |
| ! | CTGACCTAACACCTTTTATA+TGG | - | chr2_4:26318149-26318168 | Msa0322800:intron | 35.0% |
| GTTTACAAAACGGTGTTTGA+TGG | + | chr2_4:26318314-26318333 | None:intergenic | 35.0% | |
| !! | TAGAAAGTGTCTGTTTGGTA+CGG | + | chr2_4:26318338-26318357 | None:intergenic | 35.0% |
| AAATGAGTCTCTTTGACCAA+AGG | - | chr2_4:26318422-26318441 | Msa0322800:intron | 35.0% | |
| AATGAGTCTCTTTGACCAAA+GGG | - | chr2_4:26318423-26318442 | Msa0322800:intron | 35.0% | |
| ! | CTTTGACCAAAGGGTTATTT+TGG | - | chr2_4:26318432-26318451 | Msa0322800:intron | 35.0% |
| ! | AACTATCTGCAAATGGGTTT+AGG | - | chr2_4:26318473-26318492 | Msa0322800:intron | 35.0% |
| GAAGAACAGATGGAAAGAAA+TGG | - | chr2_4:26318528-26318547 | Msa0322800:intron | 35.0% | |
| !!! | GTAGTTTTAACAACTTCCAC+AGG | + | chr2_4:26318632-26318651 | None:intergenic | 35.0% |
| !! | TAATGATGCAGGGCTATTTT+TGG | + | chr2_4:26318717-26318736 | None:intergenic | 35.0% |
| ! | GAACCATAGCAAGAATTTTG+AGG | + | chr2_4:26318791-26318810 | None:intergenic | 35.0% |
| TGTATCCTCATACAACTTCA+AGG | - | chr2_4:26318831-26318850 | Msa0322800:CDS | 35.0% | |
| TCAACTTTGTCATCTGGTAT+TGG | - | chr2_4:26318854-26318873 | Msa0322800:CDS | 35.0% | |
| GAGTTGCTATCAAGAAACAA+GGG | + | chr2_4:26318905-26318924 | None:intergenic | 35.0% | |
| AGAGTTGCTATCAAGAAACA+AGG | + | chr2_4:26318906-26318925 | None:intergenic | 35.0% | |
| ! | CTCAGAATAACACTGATTAC+AGG | - | chr2_4:26318930-26318949 | Msa0322800:CDS | 35.0% |
| ! | TGGTTTGTAGATGTGTAACT+CGG | - | chr2_4:26319302-26319321 | Msa0322800:intron | 35.0% |
| ! | TCGGAAGTTAGTTTGGTAAT+CGG | - | chr2_4:26319321-26319340 | Msa0322800:intron | 35.0% |
| TTGATCTCTTAATGAGTGTG+AGG | + | chr2_4:26319453-26319472 | None:intergenic | 35.0% | |
| AAAAGGAACAGGTATGTGTA+TGG | - | chr2_4:26319606-26319625 | Msa0322800:intron | 35.0% | |
| TGTGTATGGACAAAAAGAAG+AGG | - | chr2_4:26319620-26319639 | Msa0322800:intron | 35.0% | |
| CAAAGAAGTAGAAGATGATG+AGG | + | chr2_4:26319760-26319779 | None:intergenic | 35.0% | |
| TTCATCGCTTCTTTGATGAA+TGG | - | chr2_4:26319886-26319905 | Msa0322800:CDS | 35.0% | |
| TTTGATGAATGGCCACATAA+AGG | - | chr2_4:26319897-26319916 | Msa0322800:CDS | 35.0% | |
| TTGATGAATGGCCACATAAA+GGG | - | chr2_4:26319898-26319917 | Msa0322800:CDS | 35.0% | |
| ! | TTCACTTCTAGAAATACCCA+TGG | - | chr2_4:26320008-26320027 | Msa0322800:five_prime_UTR | 35.0% |
| ATCAAAGAAATTGAGCCGAA+TGG | + | chr2_4:26320061-26320080 | None:intergenic | 35.0% | |
| TTACATCGTGAATTCGAACA+TGG | - | chr2_4:26320139-26320158 | Msa0322800:five_prime_UTR | 35.0% | |
| ! | TGCCATTGTGATGGAGTAAA+AGG | + | chr2_4:26317641-26317660 | None:intergenic | 40.0% |
| TCAAGTTCTTGCCATTGTGA+TGG | + | chr2_4:26317650-26317669 | None:intergenic | 40.0% | |
| ACGGTGTTTGATGGAAATCA+CGG | + | chr2_4:26318305-26318324 | None:intergenic | 40.0% | |
| TTGGTACGGCGTTTACAAAA+CGG | + | chr2_4:26318324-26318343 | None:intergenic | 40.0% | |
| TGGATGGAACTATCTGCAAA+TGG | - | chr2_4:26318466-26318485 | Msa0322800:intron | 40.0% | |
| GGATGGAACTATCTGCAAAT+GGG | - | chr2_4:26318467-26318486 | Msa0322800:intron | 40.0% | |
| AGAAAAATAGATCCAGAGCC+AGG | - | chr2_4:26318497-26318516 | Msa0322800:intron | 40.0% | |
| TCTGTTCTTCTACATCTACC+TGG | + | chr2_4:26318518-26318537 | None:intergenic | 40.0% | |
| GGTAGATGTAGAAGAACAGA+TGG | - | chr2_4:26318518-26318537 | Msa0322800:intron | 40.0% | |
| TGTGAAAGACACATGCATAG+AGG | - | chr2_4:26318587-26318606 | Msa0322800:intron | 40.0% | |
| GTTGACCTTGAAGTTGTATG+AGG | + | chr2_4:26318839-26318858 | None:intergenic | 40.0% | |
| TCAAGGTCAACTTTGTCATC+TGG | - | chr2_4:26318848-26318867 | Msa0322800:CDS | 40.0% | |
| GCTTCACTGCAAAAATGACA+TGG | + | chr2_4:26319058-26319077 | None:intergenic | 40.0% | |
| GTGTAACTCGGAAGTTAGTT+TGG | - | chr2_4:26319314-26319333 | Msa0322800:intron | 40.0% | |
| GTATGGACAAAAAGAAGAGG+TGG | - | chr2_4:26319623-26319642 | Msa0322800:intron | 40.0% | |
| GCATTCTTCAAAGAACCTTC+TGG | - | chr2_4:26319654-26319673 | Msa0322800:intron | 40.0% | |
| TTCATAGTACTGCTACCAGA+AGG | + | chr2_4:26319672-26319691 | None:intergenic | 40.0% | |
| AAGCTTCTCTGCTTCATCAA+TGG | - | chr2_4:26319692-26319711 | Msa0322800:intron | 40.0% | |
| CATCAATGGAACATGATCCT+TGG | - | chr2_4:26319706-26319725 | Msa0322800:intron | 40.0% | |
| GAGGAAGAACTCATAGTAAG+TGG | + | chr2_4:26319741-26319760 | None:intergenic | 40.0% | |
| ! | AAGCGATGAACAGTTTTCTG+AGG | + | chr2_4:26319876-26319895 | None:intergenic | 40.0% |
| CATTGATCTCTCCCTTTATG+TGG | + | chr2_4:26319912-26319931 | None:intergenic | 40.0% | |
| CACATAAAGGGAGAGATCAA+TGG | - | chr2_4:26319910-26319929 | Msa0322800:CDS | 40.0% | |
| GAGAGATCAATGGCTTGATT+TGG | - | chr2_4:26319920-26319939 | Msa0322800:exon | 40.0% | |
| AGTTGGAAAATCATGACCAG+AGG | + | chr2_4:26319988-26320007 | None:intergenic | 40.0% | |
| GGAAGTGGAACCATTAGGTT+AGG | + | chr2_4:26317436-26317455 | None:intergenic | 45.0% | |
| AGGAAGGAAGTGGAACCATT+AGG | + | chr2_4:26317441-26317460 | None:intergenic | 45.0% | |
| !! | CAGTGTTGGTGTTGTTGACT+AGG | + | chr2_4:26317785-26317804 | None:intergenic | 45.0% |
| GGAGAAAGGACTTACAGTGT+TGG | + | chr2_4:26317799-26317818 | None:intergenic | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr2_4:26318613-26318632 | Msa0322800:CDS | 45.0% | |
| CTTCCACAGGCTTTCTTGAA+CGG | + | chr2_4:26318619-26318638 | None:intergenic | 45.0% | |
| ! | GTAAGTGGTGTTAGTTGCCA+AGG | + | chr2_4:26319726-26319745 | None:intergenic | 45.0% |
| ! | GCTGCTTTGAGTGTTCACTA+AGG | + | chr2_4:26319839-26319858 | None:intergenic | 45.0% |
| TCGATTTCGATTCCATCCTC+TGG | - | chr2_4:26319969-26319988 | Msa0322800:five_prime_UTR | 45.0% | |
| GGAAAATCATGACCAGAGGA+TGG | + | chr2_4:26319984-26320003 | None:intergenic | 45.0% | |
| !!! | TCTTTTTTAAAAAATTAAAA+AGG | + | chr2_4:26317922-26317941 | None:intergenic | 5.0% |
| CTTCTACATCTACCTGGCTC+TGG | + | chr2_4:26318512-26318531 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 26317337 | 26320219 | 26317337 | ID=Msa0322800;Name=Msa0322800 |
| chr2_4 | mRNA | 26317337 | 26320219 | 26317337 | ID=Msa0322800-mRNA-1;Parent=Msa0322800;Name=Msa0322800-mRNA-1;_AED=0.27;_eAED=0.27;_QI=283|1|1|1|1|1|3|182|365 |
| chr2_4 | exon | 26317337 | 26317945 | 26317337 | ID=Msa0322800-mRNA-1:exon:9178;Parent=Msa0322800-mRNA-1 |
| chr2_4 | exon | 26318605 | 26319091 | 26318605 | ID=Msa0322800-mRNA-1:exon:9177;Parent=Msa0322800-mRNA-1 |
| chr2_4 | exon | 26319753 | 26320219 | 26319753 | ID=Msa0322800-mRNA-1:exon:9176;Parent=Msa0322800-mRNA-1 |
| chr2_4 | five_prime_UTR | 26319937 | 26320219 | 26319937 | ID=Msa0322800-mRNA-1:five_prime_utr;Parent=Msa0322800-mRNA-1 |
| chr2_4 | CDS | 26319753 | 26319936 | 26319753 | ID=Msa0322800-mRNA-1:cds;Parent=Msa0322800-mRNA-1 |
| chr2_4 | CDS | 26318605 | 26319091 | 26318605 | ID=Msa0322800-mRNA-1:cds;Parent=Msa0322800-mRNA-1 |
| chr2_4 | CDS | 26317519 | 26317945 | 26317519 | ID=Msa0322800-mRNA-1:cds;Parent=Msa0322800-mRNA-1 |
| chr2_4 | three_prime_UTR | 26317337 | 26317518 | 26317337 | ID=Msa0322800-mRNA-1:three_prime_utr;Parent=Msa0322800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
