Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323050 | XP_039687055.1 | 89.091 | 220 | 20 | 2 | 1 | 217 | 1 | 219 | 5.74e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323050 | sp|F4JIJ7|BH162_ARATH | 39.106 | 179 | 95 | 5 | 13 | 180 | 11 | 186 | 9.26e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0323050 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323050 | MtrunA17_Chr2g0324511 | 85.890 | 163 | 20 | 2 | 1 | 160 | 1 | 163 | 2.33e-95 | 275 |
| Msa0323050 | MtrunA17_Chr4g0040201 | 64.824 | 199 | 59 | 4 | 9 | 201 | 8 | 201 | 2.11e-85 | 251 |
| Msa0323050 | MtrunA17_Chr2g0324571 | 87.288 | 118 | 11 | 2 | 46 | 160 | 2 | 118 | 1.68e-67 | 203 |
| Msa0323050 | MtrunA17_Chr2g0324521 | 81.739 | 115 | 21 | 0 | 46 | 160 | 2 | 116 | 1.41e-63 | 193 |
| Msa0323050 | MtrunA17_Chr2g0282341 | 37.778 | 135 | 78 | 2 | 49 | 181 | 4 | 134 | 1.19e-28 | 104 |
| Msa0323050 | MtrunA17_Chr2g0324531 | 79.661 | 59 | 12 | 0 | 159 | 217 | 2 | 60 | 7.24e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323050 | AT4G20970.1 | 39.106 | 179 | 95 | 5 | 13 | 180 | 11 | 186 | 9.41e-33 | 117 |
| Msa0323050 | AT1G10585.1 | 29.944 | 177 | 114 | 3 | 7 | 182 | 8 | 175 | 5.61e-17 | 75.9 |
| Msa0323050 | AT1G10586.1 | 26.286 | 175 | 119 | 3 | 7 | 180 | 8 | 173 | 5.86e-13 | 65.1 |
| Msa0323050 | AT1G10585.2 | 27.206 | 136 | 93 | 2 | 50 | 184 | 15 | 145 | 6.85e-11 | 58.9 |
| Msa0323050 | AT5G51780.1 | 29.518 | 166 | 101 | 5 | 22 | 176 | 10 | 170 | 8.13e-11 | 59.3 |
Find 48 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATCTCTCGCTTATTT+TGG | 0.185035 | 2_4:+26676564 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_4:-26677153 | Msa0323050:CDS |
| CAATTGTGGGATCTTGAAAT+TGG | 0.247122 | 2_4:-26676499 | Msa0323050:CDS |
| GGAGAAGAAAGAAAGTTTAA+TGG | 0.269701 | 2_4:-26677351 | Msa0323050:CDS |
| GGTGGCTGCTCGAGTTCTTC+TGG | 0.283108 | 2_4:-26677308 | Msa0323050:CDS |
| GAAGCATAGATTTATGTATC+AGG | 0.333471 | 2_4:-26676417 | Msa0323050:three_prime_UTR |
| TCTATGCTTCATCAAGGATT+TGG | 0.339592 | 2_4:+26676430 | None:intergenic |
| GAGAGTTGAGTTTAGAAAAG+AGG | 0.353043 | 2_4:+26677797 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.362015 | 2_4:-26677350 | Msa0323050:CDS |
| CGAGAGATTGAAAGCGTTTG+TGG | 0.363389 | 2_4:-26676554 | Msa0323050:CDS |
| AGCGTTTGTGGAAGGATCTA+TGG | 0.366113 | 2_4:-26676542 | Msa0323050:CDS |
| AATGATCTTTCTTTCGACTT+TGG | 0.370678 | 2_4:+26677849 | None:intergenic |
| TAGAAAAGAGGATCTTCATT+TGG | 0.386590 | 2_4:+26677809 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_4:-26677149 | Msa0323050:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_4:-26676486 | Msa0323050:CDS |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2_4:+26677207 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_4:+26677416 | None:intergenic |
| AAAATTGAGATTCATGAAAC+GGG | 0.451327 | 2_4:-26677269 | Msa0323050:CDS |
| TCAAGGATTTGGTAAACTCT+TGG | 0.454078 | 2_4:+26676441 | None:intergenic |
| TCGACTTTGGTTGAAGAAGA+AGG | 0.461998 | 2_4:+26677862 | None:intergenic |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_4:-26676485 | Msa0323050:CDS |
| ATCACCTTTGGATTATAGCT+AGG | 0.496982 | 2_4:+26677769 | None:intergenic |
| AGGCTATAAACTACATAAAG+AGG | 0.505657 | 2_4:-26677400 | Msa0323050:CDS |
| ATTTCAAGATCCCACAATTG+AGG | 0.509351 | 2_4:+26676502 | None:intergenic |
| TCACCTTTGGATTATAGCTA+GGG | 0.515824 | 2_4:+26677770 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_4:-26677117 | Msa0323050:intron |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_4:+26677422 | None:intergenic |
| TACATATACCTGAGCATGTA+CGG | 0.532457 | 2_4:+26677109 | None:intergenic |
| TGAAACGGGAACCACTCTAC+AGG | 0.533148 | 2_4:-26677255 | Msa0323050:CDS |
| AACAAGAGATCACGTGGTGG+TGG | 0.544675 | 2_4:-26677326 | Msa0323050:CDS |
| TACAGGTGATTGTAACATGT+GGG | 0.552681 | 2_4:-26677238 | Msa0323050:CDS |
| GGAAACACAGCCTCAATTGT+GGG | 0.559018 | 2_4:-26676512 | Msa0323050:CDS |
| AGATTGAAAGCGTTTGTGGA+AGG | 0.560710 | 2_4:-26676550 | Msa0323050:CDS |
| GACAAATATAAACTTAGCAA+AGG | 0.562346 | 2_4:-26677372 | Msa0323050:CDS |
| CATAAATCTATGCTTCATCA+AGG | 0.563090 | 2_4:+26676424 | None:intergenic |
| GCGTTTGTGGAAGGATCTAT+GGG | 0.563195 | 2_4:-26676541 | Msa0323050:CDS |
| TGGAAACACAGCCTCAATTG+TGG | 0.568137 | 2_4:-26676513 | Msa0323050:CDS |
| AAGCATAGATTTATGTATCA+GGG | 0.581682 | 2_4:-26676416 | None:intergenic |
| CTACAGGTGATTGTAACATG+TGG | 0.624700 | 2_4:-26677239 | Msa0323050:CDS |
| TCTCCCTAGCTATAATCCAA+AGG | 0.625430 | 2_4:-26677773 | Msa0323050:intron |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_4:-26677420 | Msa0323050:CDS |
| TCAATGGATCATAATCAACA+AGG | 0.644293 | 2_4:-26677892 | Msa0323050:CDS |
| TGTTACAATCACCTGTAGAG+TGG | 0.651914 | 2_4:+26677244 | None:intergenic |
| GGAAGGATCTATGGGCGATG+TGG | 0.675287 | 2_4:-26676533 | Msa0323050:CDS |
| ATGGGAAACAAGAGATCACG+TGG | 0.723193 | 2_4:-26677332 | Msa0323050:CDS |
| ACAGGTGATTGTAACATGTG+GGG | 0.729449 | 2_4:-26677237 | Msa0323050:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2_4:-26677177 | Msa0323050:CDS |
| GGAAACAAGAGATCACGTGG+TGG | 0.788770 | 2_4:-26677329 | Msa0323050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAACACATATATTAATT+TGG | - | chr2_4:26676827-26676846 | Msa0323050:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_4:26677102-26677121 | None:intergenic | 15.0% |
| !! | AAATAAACTCCAAATAAAAA+AGG | - | chr2_4:26677385-26677404 | Msa0323050:CDS | 15.0% |
| !!! | AAAAAAAATTGCATCATTTT+TGG | + | chr2_4:26677460-26677479 | None:intergenic | 15.0% |
| !! | GAATAACACATATATTAATT+TGG | - | chr2_4:26676827-26676846 | Msa0323050:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_4:26677102-26677121 | None:intergenic | 15.0% |
| !! | AAATAAACTCCAAATAAAAA+AGG | - | chr2_4:26677385-26677404 | Msa0323050:CDS | 15.0% |
| !!! | AAAAAAAATTGCATCATTTT+TGG | + | chr2_4:26677460-26677479 | None:intergenic | 15.0% |
| !! | ATATATGTATATGAATGTGA+TGG | + | chr2_4:26676574-26676593 | None:intergenic | 20.0% |
| !! | AAAAATTGAGATTCATGAAA+CGG | - | chr2_4:26677036-26677055 | Msa0323050:intron | 20.0% |
| !!! | TTCATAGTTCCTTTTTTATT+TGG | + | chr2_4:26677397-26677416 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTTTTAACCAAA+AGG | - | chr2_4:26677467-26677486 | Msa0323050:intron | 20.0% |
| !!! | GCAATTTTTTTTAACCAAAA+GGG | - | chr2_4:26677468-26677487 | Msa0323050:intron | 20.0% |
| !!! | TTCTTAACAATATTTTGCAA+AGG | - | chr2_4:26677583-26677602 | Msa0323050:intron | 20.0% |
| !! | ATATATGTATATGAATGTGA+TGG | + | chr2_4:26676574-26676593 | None:intergenic | 20.0% |
| !! | AAAAATTGAGATTCATGAAA+CGG | - | chr2_4:26677036-26677055 | Msa0323050:intron | 20.0% |
| !!! | TTCATAGTTCCTTTTTTATT+TGG | + | chr2_4:26677397-26677416 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTTTTAACCAAA+AGG | - | chr2_4:26677467-26677486 | Msa0323050:intron | 20.0% |
| !!! | GCAATTTTTTTTAACCAAAA+GGG | - | chr2_4:26677468-26677487 | Msa0323050:intron | 20.0% |
| !!! | TTCTTAACAATATTTTGCAA+AGG | - | chr2_4:26677583-26677602 | Msa0323050:intron | 20.0% |
| ! | GAAAGATCATTGAGAAAAAT+AGG | - | chr2_4:26676469-26676488 | Msa0323050:CDS | 25.0% |
| !! | CATATATGTATTTTCATGTG+AGG | - | chr2_4:26676587-26676606 | Msa0323050:CDS | 25.0% |
| ! | TGTTATGTTTCATTTAATGC+AGG | - | chr2_4:26676850-26676869 | Msa0323050:intron | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2_4:26676934-26676953 | Msa0323050:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_4:26676956-26676975 | Msa0323050:intron | 25.0% |
| !! | GTTTCATGAATCTCAATTTT+TGG | + | chr2_4:26677037-26677056 | None:intergenic | 25.0% |
| ! | AAAATTGAGATTCATGAAAC+GGG | - | chr2_4:26677037-26677056 | Msa0323050:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_4:26677153-26677172 | Msa0323050:CDS | 25.0% |
| ! | GAAAAAAACAAGTTGTATCA+TGG | + | chr2_4:26677271-26677290 | None:intergenic | 25.0% |
| ! | ATATGTGACATTGTTCATTA+GGG | + | chr2_4:26677352-26677371 | None:intergenic | 25.0% |
| ! | TGTGTCAAAAAAATGTTGAA+GGG | + | chr2_4:26677619-26677638 | None:intergenic | 25.0% |
| ! | TTAAGTTTCTCAATGTTGAA+GGG | + | chr2_4:26677647-26677666 | None:intergenic | 25.0% |
| ! | ATTAAGTTTCTCAATGTTGA+AGG | + | chr2_4:26677648-26677667 | None:intergenic | 25.0% |
| ! | CCAAATTGTAAAAAAGATTG+CGG | + | chr2_4:26677717-26677736 | None:intergenic | 25.0% |
| ! | GAAAGATCATTGAGAAAAAT+AGG | - | chr2_4:26676469-26676488 | Msa0323050:CDS | 25.0% |
| !! | CATATATGTATTTTCATGTG+AGG | - | chr2_4:26676587-26676606 | Msa0323050:CDS | 25.0% |
| ! | TGTTATGTTTCATTTAATGC+AGG | - | chr2_4:26676850-26676869 | Msa0323050:intron | 25.0% |
| ! | GACAAATATAAACTTAGCAA+AGG | - | chr2_4:26676934-26676953 | Msa0323050:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_4:26676956-26676975 | Msa0323050:intron | 25.0% |
| !! | GTTTCATGAATCTCAATTTT+TGG | + | chr2_4:26677037-26677056 | None:intergenic | 25.0% |
| ! | AAAATTGAGATTCATGAAAC+GGG | - | chr2_4:26677037-26677056 | Msa0323050:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_4:26677153-26677172 | Msa0323050:CDS | 25.0% |
| ! | GAAAAAAACAAGTTGTATCA+TGG | + | chr2_4:26677271-26677290 | None:intergenic | 25.0% |
| ! | ATATGTGACATTGTTCATTA+GGG | + | chr2_4:26677352-26677371 | None:intergenic | 25.0% |
| ! | TGTGTCAAAAAAATGTTGAA+GGG | + | chr2_4:26677619-26677638 | None:intergenic | 25.0% |
| ! | TTAAGTTTCTCAATGTTGAA+GGG | + | chr2_4:26677647-26677666 | None:intergenic | 25.0% |
| ! | ATTAAGTTTCTCAATGTTGA+AGG | + | chr2_4:26677648-26677667 | None:intergenic | 25.0% |
| ! | CCAAATTGTAAAAAAGATTG+CGG | + | chr2_4:26677717-26677736 | None:intergenic | 25.0% |
| AATGATCTTTCTTTCGACTT+TGG | + | chr2_4:26676460-26676479 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2_4:26676500-26676519 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | + | chr2_4:26676552-26676571 | None:intergenic | 30.0% | |
| AAAGAGTTATGCAATGAATG+TGG | + | chr2_4:26676620-26676639 | None:intergenic | 30.0% | |
| ! | TGCATAACTCTTTGTTGTAT+TGG | - | chr2_4:26676627-26676646 | Msa0323050:intron | 30.0% |
| TACCTACATGACATTCATAT+AGG | - | chr2_4:26676715-26676734 | Msa0323050:intron | 30.0% | |
| AACCTATATGAATGTCATGT+AGG | + | chr2_4:26676720-26676739 | None:intergenic | 30.0% | |
| TTTCTTATGTCTAGGTGATA+GGG | + | chr2_4:26676760-26676779 | None:intergenic | 30.0% | |
| TAGGGTTTAGTAATAAGAAG+AGG | + | chr2_4:26676785-26676804 | None:intergenic | 30.0% | |
| AGGCTATAAACTACATAAAG+AGG | - | chr2_4:26676906-26676925 | Msa0323050:intron | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_4:26676955-26676974 | Msa0323050:intron | 30.0% | |
| GTATCATGGTTTATGGTTTA+AGG | + | chr2_4:26677257-26677276 | None:intergenic | 30.0% | |
| ACAAGTTGTATCATGGTTTA+TGG | + | chr2_4:26677264-26677283 | None:intergenic | 30.0% | |
| TTCATTAGGGTTAGAAATAG+CGG | + | chr2_4:26677339-26677358 | None:intergenic | 30.0% | |
| CATATGTGACATTGTTCATT+AGG | + | chr2_4:26677353-26677372 | None:intergenic | 30.0% | |
| CTGTGTCAAAAAAATGTTGA+AGG | + | chr2_4:26677620-26677639 | None:intergenic | 30.0% | |
| !!! | CCGCAATCTTTTTTACAATT+TGG | - | chr2_4:26677714-26677733 | Msa0323050:intron | 30.0% |
| ! | TTTCAATCTCTCGCTTATTT+TGG | + | chr2_4:26677745-26677764 | None:intergenic | 30.0% |
| CATAAATCTATGCTTCATCA+AGG | + | chr2_4:26677885-26677904 | None:intergenic | 30.0% | |
| GAAGCATAGATTTATGTATC+AGG | - | chr2_4:26677889-26677908 | Msa0323050:CDS | 30.0% | |
| AATGATCTTTCTTTCGACTT+TGG | + | chr2_4:26676460-26676479 | None:intergenic | 30.0% | |
| TAGAAAAGAGGATCTTCATT+TGG | + | chr2_4:26676500-26676519 | None:intergenic | 30.0% | |
| GAAATTAAACAGATCACCTT+TGG | + | chr2_4:26676552-26676571 | None:intergenic | 30.0% | |
| AAAGAGTTATGCAATGAATG+TGG | + | chr2_4:26676620-26676639 | None:intergenic | 30.0% | |
| ! | TGCATAACTCTTTGTTGTAT+TGG | - | chr2_4:26676627-26676646 | Msa0323050:intron | 30.0% |
| TACCTACATGACATTCATAT+AGG | - | chr2_4:26676715-26676734 | Msa0323050:intron | 30.0% | |
| AACCTATATGAATGTCATGT+AGG | + | chr2_4:26676720-26676739 | None:intergenic | 30.0% | |
| TTTCTTATGTCTAGGTGATA+GGG | + | chr2_4:26676760-26676779 | None:intergenic | 30.0% | |
| TAGGGTTTAGTAATAAGAAG+AGG | + | chr2_4:26676785-26676804 | None:intergenic | 30.0% | |
| AGGCTATAAACTACATAAAG+AGG | - | chr2_4:26676906-26676925 | Msa0323050:intron | 30.0% | |
| GGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_4:26676955-26676974 | Msa0323050:intron | 30.0% | |
| GTATCATGGTTTATGGTTTA+AGG | + | chr2_4:26677257-26677276 | None:intergenic | 30.0% | |
| ACAAGTTGTATCATGGTTTA+TGG | + | chr2_4:26677264-26677283 | None:intergenic | 30.0% | |
| TTCATTAGGGTTAGAAATAG+CGG | + | chr2_4:26677339-26677358 | None:intergenic | 30.0% | |
| CATATGTGACATTGTTCATT+AGG | + | chr2_4:26677353-26677372 | None:intergenic | 30.0% | |
| CTGTGTCAAAAAAATGTTGA+AGG | + | chr2_4:26677620-26677639 | None:intergenic | 30.0% | |
| !!! | CCGCAATCTTTTTTACAATT+TGG | - | chr2_4:26677714-26677733 | Msa0323050:intron | 30.0% |
| ! | TTTCAATCTCTCGCTTATTT+TGG | + | chr2_4:26677745-26677764 | None:intergenic | 30.0% |
| CATAAATCTATGCTTCATCA+AGG | + | chr2_4:26677885-26677904 | None:intergenic | 30.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2_4:26676512-26676531 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | + | chr2_4:26676539-26676558 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | + | chr2_4:26676540-26676559 | None:intergenic | 35.0% | |
| GTTTCTTATGTCTAGGTGAT+AGG | + | chr2_4:26676761-26676780 | None:intergenic | 35.0% | |
| !! | AAGAGGTGTTTCTTATGTCT+AGG | + | chr2_4:26676768-26676787 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_4:26676887-26676906 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_4:26676886-26676905 | Msa0323050:intron | 35.0% | |
| TACAGGTGATTGTAACATGT+GGG | - | chr2_4:26677068-26677087 | Msa0323050:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_4:26677157-26677176 | Msa0323050:CDS | 35.0% | |
| TACATATACCTGAGCATGTA+CGG | + | chr2_4:26677200-26677219 | None:intergenic | 35.0% | |
| !!! | GGTTAGAAATAGCGGATTTT+AGG | + | chr2_4:26677331-26677350 | None:intergenic | 35.0% |
| ATTTCAAGATCCCACAATTG+AGG | + | chr2_4:26677807-26677826 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_4:26677807-26677826 | Msa0323050:CDS | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2_4:26677820-26677839 | Msa0323050:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2_4:26677821-26677840 | Msa0323050:CDS | 35.0% | |
| ! | TCAAGGATTTGGTAAACTCT+TGG | + | chr2_4:26677868-26677887 | None:intergenic | 35.0% |
| TCTATGCTTCATCAAGGATT+TGG | + | chr2_4:26677879-26677898 | None:intergenic | 35.0% | |
| GAGAGTTGAGTTTAGAAAAG+AGG | + | chr2_4:26676512-26676531 | None:intergenic | 35.0% | |
| TCACCTTTGGATTATAGCTA+GGG | + | chr2_4:26676539-26676558 | None:intergenic | 35.0% | |
| ATCACCTTTGGATTATAGCT+AGG | + | chr2_4:26676540-26676559 | None:intergenic | 35.0% | |
| GTTTCTTATGTCTAGGTGAT+AGG | + | chr2_4:26676761-26676780 | None:intergenic | 35.0% | |
| !! | AAGAGGTGTTTCTTATGTCT+AGG | + | chr2_4:26676768-26676787 | None:intergenic | 35.0% |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_4:26676887-26676906 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_4:26676886-26676905 | Msa0323050:intron | 35.0% | |
| TACAGGTGATTGTAACATGT+GGG | - | chr2_4:26677068-26677087 | Msa0323050:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_4:26677157-26677176 | Msa0323050:CDS | 35.0% | |
| TACATATACCTGAGCATGTA+CGG | + | chr2_4:26677200-26677219 | None:intergenic | 35.0% | |
| !!! | GGTTAGAAATAGCGGATTTT+AGG | + | chr2_4:26677331-26677350 | None:intergenic | 35.0% |
| ATTTCAAGATCCCACAATTG+AGG | + | chr2_4:26677807-26677826 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_4:26677807-26677826 | Msa0323050:CDS | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2_4:26677820-26677839 | Msa0323050:CDS | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2_4:26677821-26677840 | Msa0323050:CDS | 35.0% | |
| ! | TCAAGGATTTGGTAAACTCT+TGG | + | chr2_4:26677868-26677887 | None:intergenic | 35.0% |
| TCTATGCTTCATCAAGGATT+TGG | + | chr2_4:26677879-26677898 | None:intergenic | 35.0% | |
| TCGACTTTGGTTGAAGAAGA+AGG | + | chr2_4:26676447-26676466 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | - | chr2_4:26676533-26676552 | Msa0323050:CDS | 40.0% | |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | - | chr2_4:26676635-26676654 | Msa0323050:intron | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | - | chr2_4:26676636-26676655 | Msa0323050:intron | 40.0% |
| TCATGTAGGTACTCTACTTG+TGG | + | chr2_4:26676706-26676725 | None:intergenic | 40.0% | |
| TAAACCCTATCACCTCTTCT+TGG | - | chr2_4:26676796-26676815 | Msa0323050:intron | 40.0% | |
| ATTCATGTCAGTCCAAGAAG+AGG | + | chr2_4:26676811-26676830 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_4:26676893-26676912 | None:intergenic | 40.0% | |
| TGTTACAATCACCTGTAGAG+TGG | + | chr2_4:26677065-26677084 | None:intergenic | 40.0% | |
| CTACAGGTGATTGTAACATG+TGG | - | chr2_4:26677067-26677086 | Msa0323050:intron | 40.0% | |
| ACAGGTGATTGTAACATGTG+GGG | - | chr2_4:26677069-26677088 | Msa0323050:intron | 40.0% | |
| !! | AGATTGAAAGCGTTTGTGGA+AGG | - | chr2_4:26677756-26677775 | Msa0323050:intron | 40.0% |
| TCGACTTTGGTTGAAGAAGA+AGG | + | chr2_4:26676447-26676466 | None:intergenic | 40.0% | |
| TCTCCCTAGCTATAATCCAA+AGG | - | chr2_4:26676533-26676552 | Msa0323050:CDS | 40.0% | |
| !! | TCTTTGTTGTATTGGCTAGC+TGG | - | chr2_4:26676635-26676654 | Msa0323050:intron | 40.0% |
| !! | CTTTGTTGTATTGGCTAGCT+GGG | - | chr2_4:26676636-26676655 | Msa0323050:intron | 40.0% |
| TCATGTAGGTACTCTACTTG+TGG | + | chr2_4:26676706-26676725 | None:intergenic | 40.0% | |
| TAAACCCTATCACCTCTTCT+TGG | - | chr2_4:26676796-26676815 | Msa0323050:intron | 40.0% | |
| ATTCATGTCAGTCCAAGAAG+AGG | + | chr2_4:26676811-26676830 | None:intergenic | 40.0% | |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_4:26676893-26676912 | None:intergenic | 40.0% | |
| TGTTACAATCACCTGTAGAG+TGG | + | chr2_4:26677065-26677084 | None:intergenic | 40.0% | |
| CTACAGGTGATTGTAACATG+TGG | - | chr2_4:26677067-26677086 | Msa0323050:intron | 40.0% | |
| ACAGGTGATTGTAACATGTG+GGG | - | chr2_4:26677069-26677088 | Msa0323050:intron | 40.0% | |
| !! | AGATTGAAAGCGTTTGTGGA+AGG | - | chr2_4:26677756-26677775 | Msa0323050:intron | 40.0% |
| CAGTCCAAGAAGAGGTGATA+GGG | + | chr2_4:26676803-26676822 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAGAGGTGAT+AGG | + | chr2_4:26676804-26676823 | None:intergenic | 45.0% | |
| ATGGGAAACAAGAGATCACG+TGG | - | chr2_4:26676974-26676993 | Msa0323050:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_4:26677189-26677208 | Msa0323050:CDS | 45.0% | |
| !! | CGAGAGATTGAAAGCGTTTG+TGG | - | chr2_4:26677752-26677771 | Msa0323050:intron | 45.0% |
| AGCGTTTGTGGAAGGATCTA+TGG | - | chr2_4:26677764-26677783 | Msa0323050:intron | 45.0% | |
| GCGTTTGTGGAAGGATCTAT+GGG | - | chr2_4:26677765-26677784 | Msa0323050:intron | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | - | chr2_4:26677793-26677812 | Msa0323050:CDS | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | - | chr2_4:26677794-26677813 | Msa0323050:CDS | 45.0% | |
| CAGTCCAAGAAGAGGTGATA+GGG | + | chr2_4:26676803-26676822 | None:intergenic | 45.0% | |
| TCAGTCCAAGAAGAGGTGAT+AGG | + | chr2_4:26676804-26676823 | None:intergenic | 45.0% | |
| ATGGGAAACAAGAGATCACG+TGG | - | chr2_4:26676974-26676993 | Msa0323050:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_4:26677189-26677208 | Msa0323050:CDS | 45.0% | |
| !! | CGAGAGATTGAAAGCGTTTG+TGG | - | chr2_4:26677752-26677771 | Msa0323050:intron | 45.0% |
| AGCGTTTGTGGAAGGATCTA+TGG | - | chr2_4:26677764-26677783 | Msa0323050:intron | 45.0% | |
| GCGTTTGTGGAAGGATCTAT+GGG | - | chr2_4:26677765-26677784 | Msa0323050:intron | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | - | chr2_4:26677793-26677812 | Msa0323050:CDS | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | - | chr2_4:26677794-26677813 | Msa0323050:CDS | 45.0% | |
| GGAAACAAGAGATCACGTGG+TGG | - | chr2_4:26676977-26676996 | Msa0323050:intron | 50.0% | |
| AACAAGAGATCACGTGGTGG+TGG | - | chr2_4:26676980-26676999 | Msa0323050:intron | 50.0% | |
| TGAAACGGGAACCACTCTAC+AGG | - | chr2_4:26677051-26677070 | Msa0323050:intron | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_4:26677129-26677148 | Msa0323050:CDS | 50.0% | |
| GGAAACAAGAGATCACGTGG+TGG | - | chr2_4:26676977-26676996 | Msa0323050:intron | 50.0% | |
| AACAAGAGATCACGTGGTGG+TGG | - | chr2_4:26676980-26676999 | Msa0323050:intron | 50.0% | |
| TGAAACGGGAACCACTCTAC+AGG | - | chr2_4:26677051-26677070 | Msa0323050:intron | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_4:26677129-26677148 | Msa0323050:CDS | 50.0% | |
| GGAAGGATCTATGGGCGATG+TGG | - | chr2_4:26677773-26677792 | Msa0323050:intron | 55.0% | |
| GGAAGGATCTATGGGCGATG+TGG | - | chr2_4:26677773-26677792 | Msa0323050:intron | 55.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2_4:26676998-26677017 | Msa0323050:intron | 60.0% | |
| GGTGGCTGCTCGAGTTCTTC+TGG | - | chr2_4:26676998-26677017 | Msa0323050:intron | 60.0% | |
| !! | CGCGCGCGCGCGCGCCCTTT+TGG | + | chr2_4:26677485-26677504 | None:intergenic | 85.0% |
| !! | CGCGCGCGCGCGCGCCCTTT+TGG | + | chr2_4:26677485-26677504 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 26676417 | 26677911 | 26676417 | ID=Msa0323050;Name=Msa0323050 |
| chr2_4 | mRNA | 26676417 | 26677911 | 26676417 | ID=Msa0323050-mRNA-1;Parent=Msa0323050;Name=Msa0323050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.33|1|1|1|3|24|217 |
| chr2_4 | exon | 26676417 | 26676617 | 26676417 | ID=Msa0323050-mRNA-1:exon:9257;Parent=Msa0323050-mRNA-1 |
| chr2_4 | exon | 26677118 | 26677456 | 26677118 | ID=Msa0323050-mRNA-1:exon:9256;Parent=Msa0323050-mRNA-1 |
| chr2_4 | exon | 26677774 | 26677911 | 26677774 | ID=Msa0323050-mRNA-1:exon:9255;Parent=Msa0323050-mRNA-1 |
| chr2_4 | CDS | 26677774 | 26677911 | 26677774 | ID=Msa0323050-mRNA-1:cds;Parent=Msa0323050-mRNA-1 |
| chr2_4 | CDS | 26677118 | 26677456 | 26677118 | ID=Msa0323050-mRNA-1:cds;Parent=Msa0323050-mRNA-1 |
| chr2_4 | CDS | 26676441 | 26676617 | 26676441 | ID=Msa0323050-mRNA-1:cds;Parent=Msa0323050-mRNA-1 |
| chr2_4 | three_prime_UTR | 26676417 | 26676440 | 26676417 | ID=Msa0323050-mRNA-1:three_prime_utr;Parent=Msa0323050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
