Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323100 | XP_003596811.1 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 7.99e-167 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323100 | sp|Q8RYD6|AI5L1_ARATH | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.20e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0323100 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323100 | MtrunA17_Chr2g0321411 | 83.103 | 290 | 29 | 3 | 1 | 272 | 1 | 288 | 7.35e-171 | 473 |
| Msa0323100 | MtrunA17_Chr2g0321381 | 63.889 | 288 | 55 | 7 | 1 | 240 | 1 | 287 | 1.14e-108 | 316 |
| Msa0323100 | MtrunA17_Chr3g0080341 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.17e-26 | 105 |
| Msa0323100 | MtrunA17_Chr8g0355121 | 35.338 | 266 | 114 | 12 | 18 | 237 | 32 | 285 | 5.68e-26 | 103 |
| Msa0323100 | MtrunA17_Chr7g0254991 | 33.216 | 283 | 112 | 10 | 19 | 238 | 25 | 293 | 3.13e-24 | 99.4 |
| Msa0323100 | MtrunA17_Chr7g0266211 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 1.45e-23 | 99.0 |
| Msa0323100 | MtrunA17_Chr7g0266211 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.17e-20 | 90.9 |
| Msa0323100 | MtrunA17_Chr6g0460301 | 32.609 | 276 | 122 | 9 | 19 | 237 | 25 | 293 | 7.78e-18 | 81.6 |
| Msa0323100 | MtrunA17_Chr5g0440841 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 2.14e-17 | 79.7 |
| Msa0323100 | MtrunA17_Chr3g0133971 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 3.15e-15 | 75.1 |
| Msa0323100 | MtrunA17_Chr3g0133971 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 6.30e-14 | 71.2 |
| Msa0323100 | MtrunA17_Chr4g0044771 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 5.21e-13 | 68.2 |
| Msa0323100 | MtrunA17_Chr4g0051101 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.60e-12 | 64.7 |
| Msa0323100 | MtrunA17_Chr1g0201751 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 4.04e-11 | 61.6 |
| Msa0323100 | MtrunA17_Chr5g0405951 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 5.15e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323100 | AT3G44460.1 | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 3.25e-49 | 166 |
| Msa0323100 | AT3G56850.1 | 34.615 | 260 | 116 | 11 | 18 | 237 | 24 | 269 | 5.72e-28 | 109 |
| Msa0323100 | AT2G36270.3 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.76e-27 | 110 |
| Msa0323100 | AT2G36270.3 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.33e-11 | 64.7 |
| Msa0323100 | AT2G36270.1 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.13e-27 | 110 |
| Msa0323100 | AT2G36270.1 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.35e-15 | 76.6 |
| Msa0323100 | AT2G36270.2 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.13e-27 | 110 |
| Msa0323100 | AT2G36270.2 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.35e-15 | 76.6 |
| Msa0323100 | AT2G41070.5 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 2.00e-25 | 101 |
| Msa0323100 | AT2G41070.3 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.99e-25 | 100 |
| Msa0323100 | AT2G41070.1 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.99e-25 | 100 |
| Msa0323100 | AT2G41070.2 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.99e-25 | 100 |
| Msa0323100 | AT2G41070.4 | 32.287 | 223 | 116 | 4 | 25 | 238 | 48 | 244 | 5.32e-25 | 100 |
| Msa0323100 | AT5G44080.1 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 1.50e-15 | 75.5 |
| Msa0323100 | AT1G45249.1 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 9.12e-15 | 73.9 |
| Msa0323100 | AT1G45249.1 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 3.88e-11 | 63.2 |
| Msa0323100 | AT1G45249.7 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.14e-14 | 73.9 |
| Msa0323100 | AT1G45249.7 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.41e-11 | 63.5 |
| Msa0323100 | AT1G45249.6 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.14e-14 | 73.9 |
| Msa0323100 | AT1G45249.6 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.41e-11 | 63.5 |
| Msa0323100 | AT1G03970.1 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 3.73e-14 | 71.2 |
| Msa0323100 | AT4G34000.1 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0323100 | AT4G34000.4 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0323100 | AT4G34000.2 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.40e-14 | 71.6 |
| Msa0323100 | AT3G19290.1 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.79e-13 | 70.1 |
| Msa0323100 | AT3G19290.5 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.79e-13 | 70.1 |
| Msa0323100 | AT3G19290.4 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.81e-13 | 70.1 |
| Msa0323100 | AT3G19290.3 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.67e-13 | 69.3 |
| Msa0323100 | AT1G49720.1 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.32e-13 | 68.9 |
| Msa0323100 | AT1G49720.1 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.97e-12 | 65.1 |
| Msa0323100 | AT1G49720.3 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.32e-13 | 68.9 |
| Msa0323100 | AT1G49720.3 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.97e-12 | 65.1 |
| Msa0323100 | AT1G49720.2 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.71e-13 | 68.9 |
| Msa0323100 | AT1G49720.2 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.58e-12 | 65.1 |
| Msa0323100 | AT2G17770.2 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.25e-12 | 64.7 |
| Msa0323100 | AT4G34000.3 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.43e-12 | 66.6 |
| Msa0323100 | AT1G45249.3 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.94e-12 | 65.5 |
| Msa0323100 | AT1G45249.3 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.99e-11 | 62.8 |
| Msa0323100 | AT4G35900.1 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.40e-11 | 62.0 |
| Msa0323100 | AT1G45249.10 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.95e-11 | 62.0 |
| Msa0323100 | AT1G45249.5 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.95e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2_4:+26758883 | None:intergenic |
| ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2_4:-26759324 | Msa0323100:CDS |
| TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2_4:-26758358 | Msa0323100:intron |
| CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2_4:+26758932 | None:intergenic |
| TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2_4:+26758857 | None:intergenic |
| CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2_4:-26758971 | Msa0323100:CDS |
| ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2_4:+26758921 | None:intergenic |
| AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2_4:-26759183 | Msa0323100:CDS |
| CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2_4:+26759362 | None:intergenic |
| GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2_4:-26758106 | Msa0323100:CDS |
| GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2_4:+26759228 | None:intergenic |
| ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2_4:+26759312 | None:intergenic |
| TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2_4:+26759143 | None:intergenic |
| GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2_4:-26759061 | Msa0323100:CDS |
| GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2_4:+26758056 | None:intergenic |
| AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2_4:+26759227 | None:intergenic |
| ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2_4:+26759234 | None:intergenic |
| CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2_4:-26759238 | Msa0323100:CDS |
| TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2_4:+26759079 | None:intergenic |
| CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2_4:-26758105 | Msa0323100:CDS |
| TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2_4:+26758858 | None:intergenic |
| TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2_4:+26759336 | None:intergenic |
| TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2_4:+26759297 | None:intergenic |
| ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2_4:-26758798 | Msa0323100:intron |
| ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2_4:-26758884 | Msa0323100:CDS |
| TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2_4:-26759194 | Msa0323100:CDS |
| AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2_4:+26759363 | None:intergenic |
| GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2_4:-26758115 | Msa0323100:CDS |
| TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2_4:-26759016 | Msa0323100:CDS |
| CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2_4:+26758860 | None:intergenic |
| CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2_4:+26759335 | None:intergenic |
| CTCAAGAAACAAGAAACACC+TGG | 0.574200 | 2_4:-26759097 | Msa0323100:CDS |
| AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2_4:-26758237 | Msa0323100:CDS |
| TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2_4:+26759317 | None:intergenic |
| TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2_4:-26759416 | Msa0323100:CDS |
| AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2_4:-26758074 | Msa0323100:CDS |
| GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2_4:-26758895 | Msa0323100:CDS |
| GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2_4:-26758409 | Msa0323100:CDS |
| GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2_4:-26759347 | Msa0323100:CDS |
| GCAACATACCAAATGACAAG+TGG | 0.610150 | 2_4:-26758929 | Msa0323100:CDS |
| ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2_4:-26758914 | Msa0323100:CDS |
| CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2_4:+26758971 | None:intergenic |
| TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2_4:+26758859 | None:intergenic |
| TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2_4:-26758227 | Msa0323100:intron |
| AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2_4:-26758104 | Msa0323100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_4:26758356-26758375 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | - | chr2_4:26758762-26758781 | Msa0323100:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_4:26759048-26759067 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_4:26759235-26759254 | Msa0323100:CDS | 20.0% |
| !!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2_4:26758356-26758375 | None:intergenic | 20.0% |
| !! | TACTTATTAATCACATAACT+TGG | - | chr2_4:26758762-26758781 | Msa0323100:intron | 20.0% |
| !!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2_4:26759048-26759067 | None:intergenic | 20.0% |
| !!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2_4:26759235-26759254 | Msa0323100:CDS | 20.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2_4:26758132-26758151 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_4:26758667-26758686 | Msa0323100:intron | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_4:26758943-26758962 | Msa0323100:CDS | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_4:26758997-26759016 | Msa0323100:CDS | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_4:26758998-26759017 | Msa0323100:CDS | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_4:26759062-26759081 | Msa0323100:CDS | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_4:26759134-26759153 | Msa0323100:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | - | chr2_4:26759161-26759180 | Msa0323100:CDS | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_4:26759240-26759259 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2_4:26758132-26758151 | None:intergenic | 25.0% |
| ! | AATGATGAAAAATCGAGAAT+CGG | - | chr2_4:26758667-26758686 | Msa0323100:intron | 25.0% |
| !! | AGATTTTAAATAACAGTCTG+TGG | - | chr2_4:26758943-26758962 | Msa0323100:CDS | 25.0% |
| !!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2_4:26758997-26759016 | Msa0323100:CDS | 25.0% |
| !!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2_4:26758998-26759017 | Msa0323100:CDS | 25.0% |
| ! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2_4:26759062-26759081 | Msa0323100:CDS | 25.0% |
| ! | TAAAATGCTGAAACAATTTC+TGG | - | chr2_4:26759134-26759153 | Msa0323100:CDS | 25.0% |
| ! | CAATACTGAAACTGAATATA+CGG | - | chr2_4:26759161-26759180 | Msa0323100:CDS | 25.0% |
| ! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2_4:26759240-26759259 | None:intergenic | 25.0% |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_4:26758076-26758095 | Msa0323100:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | + | chr2_4:26758133-26758152 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_4:26758336-26758355 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_4:26758352-26758371 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_4:26758379-26758398 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_4:26758421-26758440 | Msa0323100:intron | 30.0% |
| TAAAATCGTGTTTACCTTTG+CGG | - | chr2_4:26758806-26758825 | Msa0323100:CDS | 30.0% | |
| !!! | GTTTTAAAAAAGTCTGTGAC+CGG | + | chr2_4:26758894-26758913 | None:intergenic | 30.0% |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_4:26758076-26758095 | Msa0323100:CDS | 30.0% | |
| CAAAGTTCTTGAAATCATCT+AGG | + | chr2_4:26758133-26758152 | None:intergenic | 30.0% | |
| !!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2_4:26758336-26758355 | None:intergenic | 30.0% |
| TTTCTTCTTTGAATTGTGGT+TGG | + | chr2_4:26758352-26758371 | None:intergenic | 30.0% | |
| ! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2_4:26758379-26758398 | None:intergenic | 30.0% |
| !! | AATGACTTTTGAGGATTTCT+TGG | - | chr2_4:26758421-26758440 | Msa0323100:intron | 30.0% |
| TAAAATCGTGTTTACCTTTG+CGG | - | chr2_4:26758806-26758825 | Msa0323100:CDS | 30.0% | |
| !!! | GTTTTAAAAAAGTCTGTGAC+CGG | + | chr2_4:26758894-26758913 | None:intergenic | 30.0% |
| TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_4:26758298-26758317 | Msa0323100:intron | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | - | chr2_4:26758309-26758328 | Msa0323100:intron | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_4:26758476-26758495 | Msa0323100:intron | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | - | chr2_4:26758608-26758627 | Msa0323100:intron | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | + | chr2_4:26758612-26758631 | None:intergenic | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | + | chr2_4:26758844-26758863 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | - | chr2_4:26758856-26758875 | Msa0323100:CDS | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | + | chr2_4:26758969-26758988 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_4:26759002-26759021 | Msa0323100:CDS | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_4:26759387-26759406 | Msa0323100:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_4:26759388-26759407 | Msa0323100:CDS | 35.0% | |
| TCCAGTTTGCAAGAAAACTT+CGG | - | chr2_4:26758298-26758317 | Msa0323100:intron | 35.0% | |
| AGAAAACTTCGGATGAAGTT+TGG | - | chr2_4:26758309-26758328 | Msa0323100:intron | 35.0% | |
| ! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2_4:26758476-26758495 | Msa0323100:intron | 35.0% |
| ACCAGAAAGAGGATAATTGA+TGG | - | chr2_4:26758608-26758627 | Msa0323100:intron | 35.0% | |
| ACCATCAATTATCCTCTTTC+TGG | + | chr2_4:26758612-26758631 | None:intergenic | 35.0% | |
| TTGGATTTATCGCGAAATCA+AGG | + | chr2_4:26758844-26758863 | None:intergenic | 35.0% | |
| AAATCCAACACAAATGTGAC+AGG | - | chr2_4:26758856-26758875 | Msa0323100:CDS | 35.0% | |
| TTATGTCACAGCCTAAATCA+CGG | + | chr2_4:26758969-26758988 | None:intergenic | 35.0% | |
| !! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2_4:26759002-26759021 | Msa0323100:CDS | 35.0% |
| CAATCAGCAAAGGTTCAAAA+GGG | - | chr2_4:26759387-26759406 | Msa0323100:CDS | 35.0% | |
| AATCAGCAAAGGTTCAAAAG+GGG | - | chr2_4:26759388-26759407 | Msa0323100:CDS | 35.0% | |
| !!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2_4:26758110-26758129 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | + | chr2_4:26758159-26758178 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_4:26758168-26758187 | Msa0323100:intron | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | + | chr2_4:26758183-26758202 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_4:26758198-26758217 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | + | chr2_4:26758267-26758286 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | + | chr2_4:26758268-26758287 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_4:26758295-26758314 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_4:26758299-26758318 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_4:26758302-26758321 | None:intergenic | 40.0% |
| CTCAAGAAACAAGAAACACC+TGG | - | chr2_4:26758395-26758414 | Msa0323100:CDS | 40.0% | |
| ! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_4:26758412-26758431 | Msa0323100:intron | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_4:26758416-26758435 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_4:26758431-26758450 | Msa0323100:intron | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | + | chr2_4:26758524-26758543 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | - | chr2_4:26758521-26758540 | Msa0323100:intron | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_4:26758563-26758582 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | - | chr2_4:26758563-26758582 | Msa0323100:intron | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | + | chr2_4:26758637-26758656 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | + | chr2_4:26758638-26758657 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | + | chr2_4:26758863-26758882 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | - | chr2_4:26758968-26758987 | Msa0323100:CDS | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | - | chr2_4:26759083-26759102 | Msa0323100:CDS | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | - | chr2_4:26759265-26759284 | Msa0323100:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_4:26759377-26759396 | Msa0323100:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_4:26759386-26759405 | Msa0323100:CDS | 40.0% | |
| !!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2_4:26758110-26758129 | None:intergenic | 40.0% |
| TAGGAACTCATCCATGTTGA+GGG | + | chr2_4:26758159-26758178 | None:intergenic | 40.0% | |
| ATGAGTTCCTAGCCAGTATT+TGG | - | chr2_4:26758168-26758187 | Msa0323100:intron | 40.0% | |
| ATCACTGGAACTCCAAATAC+TGG | + | chr2_4:26758183-26758202 | None:intergenic | 40.0% | |
| TTGTGTAGTAGCTTCATCAC+TGG | + | chr2_4:26758198-26758217 | None:intergenic | 40.0% | |
| GACTGAATCACCAAGTTGTT+GGG | + | chr2_4:26758267-26758286 | None:intergenic | 40.0% | |
| AGACTGAATCACCAAGTTGT+TGG | + | chr2_4:26758268-26758287 | None:intergenic | 40.0% | |
| ! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2_4:26758295-26758314 | None:intergenic | 40.0% |
| ! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2_4:26758299-26758318 | None:intergenic | 40.0% |
| ! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2_4:26758302-26758321 | None:intergenic | 40.0% |
| CTCAAGAAACAAGAAACACC+TGG | - | chr2_4:26758395-26758414 | Msa0323100:CDS | 40.0% | |
| ! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2_4:26758412-26758431 | Msa0323100:intron | 40.0% |
| TCCTCAAAAGTCATTTCTCC+AGG | + | chr2_4:26758416-26758435 | None:intergenic | 40.0% | |
| GAGGATTTCTTGGTAAAAGC+TGG | - | chr2_4:26758431-26758450 | Msa0323100:intron | 40.0% | |
| CCAGAACTTGCAATATTCAG+TGG | + | chr2_4:26758524-26758543 | None:intergenic | 40.0% | |
| CCACTGAATATTGCAAGTTC+TGG | - | chr2_4:26758521-26758540 | Msa0323100:intron | 40.0% | |
| ! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2_4:26758563-26758582 | None:intergenic | 40.0% |
| GCAACATACCAAATGACAAG+TGG | - | chr2_4:26758563-26758582 | Msa0323100:intron | 40.0% | |
| TTCGCTCCAATAGAACTTCA+GGG | + | chr2_4:26758637-26758656 | None:intergenic | 40.0% | |
| TTTCGCTCCAATAGAACTTC+AGG | + | chr2_4:26758638-26758657 | None:intergenic | 40.0% | |
| TGAACCTGTCACATTTGTGT+TGG | + | chr2_4:26758863-26758882 | None:intergenic | 40.0% | |
| GTGATTTAGGCTGTGACATA+AGG | - | chr2_4:26758968-26758987 | Msa0323100:CDS | 40.0% | |
| GGCTTATACAATAGAGCTAG+AGG | - | chr2_4:26759083-26759102 | Msa0323100:CDS | 40.0% | |
| TGAGAACAAGAGGAAACAAG+AGG | - | chr2_4:26759265-26759284 | Msa0323100:CDS | 40.0% | |
| GCAAAGAAAGCAATCAGCAA+AGG | - | chr2_4:26759377-26759396 | Msa0323100:CDS | 40.0% | |
| GCAATCAGCAAAGGTTCAAA+AGG | - | chr2_4:26759386-26759405 | Msa0323100:CDS | 40.0% | |
| GAACTTTGACTCCCTCAACA+TGG | - | chr2_4:26758145-26758164 | Msa0323100:intron | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | + | chr2_4:26758160-26758179 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_4:26758178-26758197 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_4:26758261-26758280 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_4:26758296-26758315 | None:intergenic | 45.0% |
| ACTCAGCTCCACTTGTCATT+TGG | + | chr2_4:26758574-26758593 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | + | chr2_4:26758636-26758655 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_4:26758781-26758800 | Msa0323100:intron | 45.0% |
| AAAAGTCTGTGACCGGATTG+AGG | + | chr2_4:26758887-26758906 | None:intergenic | 45.0% | |
| ! | GCAAACGTTACGGACTATCA+CGG | + | chr2_4:26759038-26759057 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | - | chr2_4:26759418-26759437 | Msa0323100:CDS | 45.0% | |
| GAACTTTGACTCCCTCAACA+TGG | - | chr2_4:26758145-26758164 | Msa0323100:intron | 45.0% | |
| CTAGGAACTCATCCATGTTG+AGG | + | chr2_4:26758160-26758179 | None:intergenic | 45.0% | |
| ! | TGGAACTCCAAATACTGGCT+AGG | + | chr2_4:26758178-26758197 | None:intergenic | 45.0% |
| ATCACCAAGTTGTTGGGAAC+TGG | + | chr2_4:26758261-26758280 | None:intergenic | 45.0% | |
| ! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2_4:26758296-26758315 | None:intergenic | 45.0% |
| ACTCAGCTCCACTTGTCATT+TGG | + | chr2_4:26758574-26758593 | None:intergenic | 45.0% | |
| TCGCTCCAATAGAACTTCAG+GGG | + | chr2_4:26758636-26758655 | None:intergenic | 45.0% | |
| ! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2_4:26758781-26758800 | Msa0323100:intron | 45.0% |
| AAAAGTCTGTGACCGGATTG+AGG | + | chr2_4:26758887-26758906 | None:intergenic | 45.0% | |
| ! | GCAAACGTTACGGACTATCA+CGG | + | chr2_4:26759038-26759057 | None:intergenic | 45.0% |
| AATCAAGCTCAAGCACAACC+TGG | - | chr2_4:26759418-26759437 | Msa0323100:CDS | 45.0% | |
| CACACCAGTTCCCAACAACT+TGG | - | chr2_4:26758254-26758273 | Msa0323100:intron | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_4:26758578-26758597 | Msa0323100:intron | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_4:26758628-26758647 | Msa0323100:intron | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | + | chr2_4:26758635-26758654 | None:intergenic | 50.0% | |
| TGACAGGTTCAGCCTCAATC+CGG | - | chr2_4:26758872-26758891 | Msa0323100:CDS | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_4:26758955-26758974 | Msa0323100:CDS | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_4:26759255-26759274 | Msa0323100:CDS | 50.0% | |
| CACACCAGTTCCCAACAACT+TGG | - | chr2_4:26758254-26758273 | Msa0323100:intron | 50.0% | |
| ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2_4:26758578-26758597 | Msa0323100:intron | 50.0% | |
| TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2_4:26758628-26758647 | Msa0323100:intron | 50.0% | |
| CGCTCCAATAGAACTTCAGG+GGG | + | chr2_4:26758635-26758654 | None:intergenic | 50.0% | |
| TGACAGGTTCAGCCTCAATC+CGG | - | chr2_4:26758872-26758891 | Msa0323100:CDS | 50.0% | |
| ACAGTCTGTGGCCGTGATTT+AGG | - | chr2_4:26758955-26758974 | Msa0323100:CDS | 50.0% | |
| AGGCTGAAGCTGAGAACAAG+AGG | - | chr2_4:26759255-26759274 | Msa0323100:CDS | 50.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_4:26758597-26758616 | Msa0323100:intron | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_4:26758694-26758713 | Msa0323100:intron | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | + | chr2_4:26758823-26758842 | None:intergenic | 55.0% | |
| GTGGAGCTGCTACCAGAAAG+AGG | - | chr2_4:26758597-26758616 | Msa0323100:intron | 55.0% | |
| ACGTTCTCGAGCAAGACGTC+AGG | - | chr2_4:26758694-26758713 | Msa0323100:intron | 55.0% | |
| GGATTGTGAAGCGACCGCAA+AGG | + | chr2_4:26758823-26758842 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 26758071 | 26759443 | 26758071 | ID=Msa0323100;Name=Msa0323100 |
| chr2_4 | mRNA | 26758071 | 26759443 | 26758071 | ID=Msa0323100-mRNA-1;Parent=Msa0323100;Name=Msa0323100-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|4|0|272 |
| chr2_4 | exon | 26758799 | 26759443 | 26758799 | ID=Msa0323100-mRNA-1:exon:9312;Parent=Msa0323100-mRNA-1 |
| chr2_4 | exon | 26758359 | 26758430 | 26758359 | ID=Msa0323100-mRNA-1:exon:9311;Parent=Msa0323100-mRNA-1 |
| chr2_4 | exon | 26758228 | 26758257 | 26758228 | ID=Msa0323100-mRNA-1:exon:9310;Parent=Msa0323100-mRNA-1 |
| chr2_4 | exon | 26758071 | 26758142 | 26758071 | ID=Msa0323100-mRNA-1:exon:9309;Parent=Msa0323100-mRNA-1 |
| chr2_4 | CDS | 26758799 | 26759443 | 26758799 | ID=Msa0323100-mRNA-1:cds;Parent=Msa0323100-mRNA-1 |
| chr2_4 | CDS | 26758359 | 26758430 | 26758359 | ID=Msa0323100-mRNA-1:cds;Parent=Msa0323100-mRNA-1 |
| chr2_4 | CDS | 26758228 | 26758257 | 26758228 | ID=Msa0323100-mRNA-1:cds;Parent=Msa0323100-mRNA-1 |
| chr2_4 | CDS | 26758071 | 26758142 | 26758071 | ID=Msa0323100-mRNA-1:cds;Parent=Msa0323100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
