AlfalfaGEDB | Msa0323290

M. sativa cultivar zhongmu-4 / Msa0323290

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323290	XP_039686195.1	85.600	375	42	6	1	370	1	368	0.0	632

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323290	sp\|Q84WU6\|ARFQ_ARATH	36.111	396	191	11	15	359	15	399	2.53e-69	231

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0323290	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323290	MtrunA17_Chr2g0277531	88.820	322	27	5	1	317	1	318	0.0	567
Msa0323290	MtrunA17_Chr2g0277461	73.315	371	83	8	10	370	4	368	0.0	522
Msa0323290	MtrunA17_Chr5g0424931	46.633	401	162	12	13	372	13	402	1.91e-99	305
Msa0323290	MtrunA17_Chr5g0417281	44.624	372	187	9	12	372	4	367	2.17e-96	296
Msa0323290	MtrunA17_Chr1g0178011	46.505	372	172	12	12	366	5	366	2.15e-95	292
Msa0323290	MtrunA17_Chr5g0436761	45.455	374	183	11	11	371	4	369	1.67e-86	269
Msa0323290	MtrunA17_Chr3g0115271	39.192	421	189	13	11	377	11	418	1.11e-82	263
Msa0323290	MtrunA17_Chr5g0424801	40.470	383	186	14	13	374	6	367	1.74e-82	256
Msa0323290	MtrunA17_Chr2g0289221	48.113	318	144	11	12	317	13	321	3.30e-82	255
Msa0323290	MtrunA17_Chr5g0424741	40.964	415	177	13	12	364	5	413	9.03e-81	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323290	AT1G77850.1	36.111	396	191	11	15	359	15	399	2.57e-70	231
Msa0323290	AT1G77850.2	36.111	396	191	11	15	359	15	399	2.74e-70	231
Msa0323290	AT4G30080.1	35.171	381	181	10	16	340	16	386	2.00e-61	209
Msa0323290	AT2G28350.2	33.816	414	198	14	11	359	2	404	3.00e-58	201
Msa0323290	AT2G28350.1	33.816	414	198	14	11	359	2	404	4.98e-58	200
Msa0323290	AT1G34390.1	32.065	368	210	13	14	358	22	372	2.84e-43	159
Msa0323290	AT4G23980.2	31.287	342	209	10	15	337	8	342	5.35e-43	159
Msa0323290	AT4G23980.1	31.287	342	209	10	15	337	8	342	6.08e-43	158
Msa0323290	AT1G35540.1	32.425	367	212	13	14	358	22	374	6.26e-43	158
Msa0323290	AT1G34310.1	32.267	344	200	11	14	337	22	352	1.33e-42	157

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Find 106 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTGAAGATCATGAA+GGG	0.620045	2_4:-26957529	None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG	0.605720	2_4:+26958034	Msa0323290:CDS
AAATAAGTTCAACCCACCAT+GGG	0.611317	2_4:-26959982	None:intergenic
AAATCTCCATGCCAAGCGGA+GGG	0.609417	2_4:-26957800	None:intergenic
AACGACGATGATGAGGTAAT+TGG	0.328138	2_4:+26957696	Msa0323290:CDS
AAGAAGAGTCAGCCCATGGT+GGG	0.617483	2_4:+26959970	Msa0323290:CDS
AAGAGGAAGAAACTCGACGT+CGG	0.718798	2_4:+26957936	Msa0323290:CDS
AAGGGAGTGAATGTAAGCAT+TGG	0.561164	2_4:-26957511	None:intergenic
AAGTTTCACCATGCCTGCCA+CGG	0.506565	2_4:+26957864	Msa0323290:CDS
AATAATGACCGGAGGGAGTA+AGG	0.421451	2_4:-26960097	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATGCAACTTTGGTATT+TGG	-	chr2_4:26957437-26957456	None:intergenic	30.0%
TAAACTCTTGAATGCAACTT+TGG	-	chr2_4:26957444-26957463	None:intergenic	30.0%
AAAACGTTGAAGATCATGAA+GGG	-	chr2_4:26957532-26957551	None:intergenic	30.0%
TATGCTTGCTTACATTAGTA+GGG	-	chr2_4:26957743-26957762	None:intergenic	30.0%
GATATAAAACACGTTTCTCT+TGG	-	chr2_4:26957895-26957914	None:intergenic	30.0%
TCAACGGGAAAATTATTTGT+TGG	+	chr2_4:26957984-26958003	Msa0323290:CDS	30.0%
CAACGGGAAAATTATTTGTT+GGG	+	chr2_4:26957985-26958004	Msa0323290:CDS	30.0%
TCATCTTAACTCTCATTCTA+GGG	-	chr2_4:26958193-26958212	None:intergenic	30.0%
TTCATCTTAACTCTCATTCT+AGG	-	chr2_4:26958194-26958213	None:intergenic	30.0%
TGAAGACTGATAAATCTTCA+AGG	+	chr2_4:26958210-26958229	Msa0323290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	26957348	26960123	26957348	ID=Msa0323290;Name=Msa0323290
chr2_4	mRNA	26957348	26960123	26957348	ID=Msa0323290-mRNA-1;Parent=Msa0323290;Name=Msa0323290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|378
chr2_4	exon	26957348	26958295	26957348	ID=Msa0323290-mRNA-1:exon:9370;Parent=Msa0323290-mRNA-1
chr2_4	exon	26959935	26960123	26959935	ID=Msa0323290-mRNA-1:exon:9371;Parent=Msa0323290-mRNA-1
chr2_4	CDS	26957348	26958295	26957348	ID=Msa0323290-mRNA-1:cds;Parent=Msa0323290-mRNA-1
chr2_4	CDS	26959935	26960123	26959935	ID=Msa0323290-mRNA-1:cds;Parent=Msa0323290-mRNA-1

Gene Sequence

>Msa0323290

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTTAACTGGGATGAATTTCAAGTCTCACAAATTCCAAGAAGAGTCAGCCCATGGTGGGTTGAACTTATTTCCCTCAAACGTGCATCAGGTCGACCATTCCCCTCAACTAAAAAACTTAGAACTGTTCAAAGTTCTGCCCCATTAAGTGATGAAAAGGAATCCCCTTACTCCCTCCGGTCATTATTATAA

Protein sequence

>Msa0323290

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQVNWDEFQVSQIPRRVSPWWVELISLKRASGRPFPSTKKLRTVQSSAPLSDEKESPYSLRSLL*