Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0323290 | XP_039686195.1 | 85.600 | 375 | 42 | 6 | 1 | 370 | 1 | 368 | 0.0 | 632 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0323290 | sp|Q84WU6|ARFQ_ARATH | 36.111 | 396 | 191 | 11 | 15 | 359 | 15 | 399 | 2.53e-69 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0323290 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0323290 | MtrunA17_Chr2g0277531 | 88.820 | 322 | 27 | 5 | 1 | 317 | 1 | 318 | 0.0 | 567 |
Msa0323290 | MtrunA17_Chr2g0277461 | 73.315 | 371 | 83 | 8 | 10 | 370 | 4 | 368 | 0.0 | 522 |
Msa0323290 | MtrunA17_Chr5g0424931 | 46.633 | 401 | 162 | 12 | 13 | 372 | 13 | 402 | 1.91e-99 | 305 |
Msa0323290 | MtrunA17_Chr5g0417281 | 44.624 | 372 | 187 | 9 | 12 | 372 | 4 | 367 | 2.17e-96 | 296 |
Msa0323290 | MtrunA17_Chr1g0178011 | 46.505 | 372 | 172 | 12 | 12 | 366 | 5 | 366 | 2.15e-95 | 292 |
Msa0323290 | MtrunA17_Chr5g0436761 | 45.455 | 374 | 183 | 11 | 11 | 371 | 4 | 369 | 1.67e-86 | 269 |
Msa0323290 | MtrunA17_Chr3g0115271 | 39.192 | 421 | 189 | 13 | 11 | 377 | 11 | 418 | 1.11e-82 | 263 |
Msa0323290 | MtrunA17_Chr5g0424801 | 40.470 | 383 | 186 | 14 | 13 | 374 | 6 | 367 | 1.74e-82 | 256 |
Msa0323290 | MtrunA17_Chr2g0289221 | 48.113 | 318 | 144 | 11 | 12 | 317 | 13 | 321 | 3.30e-82 | 255 |
Msa0323290 | MtrunA17_Chr5g0424741 | 40.964 | 415 | 177 | 13 | 12 | 364 | 5 | 413 | 9.03e-81 | 256 |
Msa0323290 | MtrunA17_Chr5g0425261 | 41.114 | 377 | 174 | 14 | 13 | 363 | 6 | 360 | 1.85e-80 | 251 |
Msa0323290 | MtrunA17_Chr5g0417211 | 46.875 | 320 | 148 | 11 | 11 | 317 | 4 | 314 | 1.09e-78 | 248 |
Msa0323290 | MtrunA17_Chr2g0326761 | 35.411 | 401 | 187 | 14 | 16 | 356 | 8 | 396 | 2.77e-64 | 217 |
Msa0323290 | MtrunA17_Chr1g0181211 | 34.536 | 388 | 182 | 11 | 16 | 340 | 24 | 402 | 1.35e-62 | 212 |
Msa0323290 | MtrunA17_Chr4g0028971 | 34.699 | 415 | 191 | 15 | 9 | 356 | 2 | 403 | 3.80e-61 | 209 |
Msa0323290 | MtrunA17_Chr1g0199681 | 34.500 | 400 | 191 | 13 | 19 | 359 | 94 | 481 | 3.01e-58 | 201 |
Msa0323290 | MtrunA17_Chr5g0419861 | 80.556 | 108 | 19 | 1 | 65 | 170 | 16 | 123 | 7.97e-55 | 177 |
Msa0323290 | MtrunA17_Chr7g0264171 | 31.796 | 412 | 204 | 14 | 16 | 359 | 28 | 430 | 1.17e-52 | 184 |
Msa0323290 | MtrunA17_Chr7g0264161 | 36.246 | 309 | 168 | 10 | 29 | 317 | 2 | 301 | 1.23e-49 | 169 |
Msa0323290 | MtrunA17_Chr5g0425661 | 46.269 | 201 | 94 | 5 | 19 | 214 | 37 | 228 | 2.70e-47 | 160 |
Msa0323290 | MtrunA17_Chr4g0070181 | 32.092 | 349 | 201 | 12 | 16 | 339 | 20 | 357 | 2.58e-41 | 155 |
Msa0323290 | MtrunA17_Chr4g0009751 | 31.063 | 367 | 209 | 13 | 19 | 362 | 19 | 364 | 3.19e-40 | 150 |
Msa0323290 | MtrunA17_Chr2g0282961 | 28.989 | 376 | 224 | 12 | 19 | 364 | 53 | 415 | 1.32e-39 | 148 |
Msa0323290 | MtrunA17_Chr2g0276781 | 31.044 | 364 | 219 | 12 | 16 | 356 | 20 | 374 | 1.44e-39 | 149 |
Msa0323290 | MtrunA17_Chr2g0301251 | 31.014 | 345 | 210 | 11 | 16 | 339 | 20 | 357 | 5.02e-39 | 148 |
Msa0323290 | MtrunA17_Chr8g0385791 | 31.304 | 345 | 199 | 13 | 19 | 337 | 59 | 391 | 2.30e-38 | 146 |
Msa0323290 | MtrunA17_Chr8g0376771 | 30.682 | 352 | 219 | 9 | 19 | 350 | 23 | 369 | 2.88e-38 | 146 |
Msa0323290 | MtrunA17_Chr8g0389081 | 31.143 | 350 | 207 | 11 | 16 | 340 | 29 | 369 | 3.74e-38 | 145 |
Msa0323290 | MtrunA17_Chr2g0285461 | 30.114 | 352 | 222 | 9 | 19 | 350 | 23 | 370 | 6.35e-38 | 145 |
Msa0323290 | MtrunA17_Chr1g0156321 | 30.347 | 346 | 208 | 11 | 16 | 337 | 40 | 376 | 1.86e-37 | 144 |
Msa0323290 | MtrunA17_Chr5g0433301 | 29.330 | 358 | 225 | 11 | 2 | 337 | 7 | 358 | 8.44e-37 | 142 |
Msa0323290 | MtrunA17_Chr3g0109391 | 29.799 | 349 | 207 | 12 | 16 | 337 | 23 | 360 | 9.34e-36 | 139 |
Msa0323290 | MtrunA17_Chr8g0346711 | 29.348 | 368 | 217 | 12 | 16 | 361 | 26 | 372 | 2.48e-35 | 137 |
Msa0323290 | MtrunA17_Chr2g0326281 | 30.829 | 386 | 211 | 14 | 19 | 357 | 56 | 432 | 4.49e-35 | 136 |
Msa0323290 | MtrunA17_Chr7g0239061 | 30.636 | 346 | 204 | 12 | 16 | 337 | 11 | 344 | 1.30e-34 | 135 |
Msa0323290 | MtrunA17_Chr4g0046371 | 29.136 | 405 | 222 | 15 | 14 | 370 | 33 | 420 | 1.39e-34 | 135 |
Msa0323290 | MtrunA17_Chr4g0029671 | 29.630 | 351 | 207 | 12 | 19 | 337 | 54 | 396 | 6.76e-30 | 121 |
Msa0323290 | MtrunA17_Chr5g0425651 | 48.361 | 122 | 52 | 5 | 239 | 350 | 1 | 121 | 1.66e-24 | 97.1 |
Msa0323290 | MtrunA17_Chr5g0424791 | 43.151 | 146 | 75 | 3 | 74 | 219 | 14 | 151 | 1.94e-24 | 97.8 |
Msa0323290 | MtrunA17_Chr8g0356211 | 25.893 | 224 | 136 | 8 | 136 | 337 | 5 | 220 | 2.09e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0323290 | AT1G77850.1 | 36.111 | 396 | 191 | 11 | 15 | 359 | 15 | 399 | 2.57e-70 | 231 |
Msa0323290 | AT1G77850.2 | 36.111 | 396 | 191 | 11 | 15 | 359 | 15 | 399 | 2.74e-70 | 231 |
Msa0323290 | AT4G30080.1 | 35.171 | 381 | 181 | 10 | 16 | 340 | 16 | 386 | 2.00e-61 | 209 |
Msa0323290 | AT2G28350.2 | 33.816 | 414 | 198 | 14 | 11 | 359 | 2 | 404 | 3.00e-58 | 201 |
Msa0323290 | AT2G28350.1 | 33.816 | 414 | 198 | 14 | 11 | 359 | 2 | 404 | 4.98e-58 | 200 |
Msa0323290 | AT1G34390.1 | 32.065 | 368 | 210 | 13 | 14 | 358 | 22 | 372 | 2.84e-43 | 159 |
Msa0323290 | AT4G23980.2 | 31.287 | 342 | 209 | 10 | 15 | 337 | 8 | 342 | 5.35e-43 | 159 |
Msa0323290 | AT4G23980.1 | 31.287 | 342 | 209 | 10 | 15 | 337 | 8 | 342 | 6.08e-43 | 158 |
Msa0323290 | AT1G35540.1 | 32.425 | 367 | 212 | 13 | 14 | 358 | 22 | 374 | 6.26e-43 | 158 |
Msa0323290 | AT1G34310.1 | 32.267 | 344 | 200 | 11 | 14 | 337 | 22 | 352 | 1.33e-42 | 157 |
Msa0323290 | AT1G35520.1 | 31.978 | 369 | 211 | 13 | 14 | 358 | 22 | 374 | 2.22e-42 | 156 |
Msa0323290 | AT2G33860.1 | 32.471 | 348 | 193 | 12 | 19 | 337 | 54 | 388 | 1.34e-41 | 154 |
Msa0323290 | AT1G35240.1 | 31.148 | 366 | 218 | 12 | 14 | 358 | 22 | 374 | 8.07e-41 | 152 |
Msa0323290 | AT5G20730.3 | 31.143 | 350 | 206 | 11 | 15 | 339 | 20 | 359 | 8.07e-39 | 148 |
Msa0323290 | AT2G46530.1 | 29.101 | 378 | 238 | 11 | 15 | 373 | 17 | 383 | 9.36e-39 | 146 |
Msa0323290 | AT5G20730.1 | 31.143 | 350 | 206 | 11 | 15 | 339 | 20 | 359 | 9.70e-39 | 148 |
Msa0323290 | AT1G34410.1 | 30.601 | 366 | 220 | 12 | 14 | 358 | 22 | 374 | 9.87e-39 | 146 |
Msa0323290 | AT2G46530.3 | 29.101 | 378 | 238 | 11 | 15 | 373 | 38 | 404 | 1.28e-38 | 146 |
Msa0323290 | AT5G37020.2 | 29.805 | 359 | 220 | 12 | 2 | 337 | 7 | 356 | 2.07e-38 | 146 |
Msa0323290 | AT5G37020.1 | 29.558 | 362 | 223 | 12 | 2 | 340 | 7 | 359 | 2.97e-38 | 146 |
Msa0323290 | AT5G20730.2 | 31.143 | 350 | 205 | 12 | 15 | 339 | 20 | 358 | 3.93e-38 | 146 |
Msa0323290 | AT3G61830.1 | 30.636 | 346 | 205 | 12 | 15 | 337 | 21 | 354 | 5.66e-38 | 144 |
Msa0323290 | AT1G19850.1 | 30.601 | 366 | 211 | 12 | 1 | 337 | 37 | 388 | 2.45e-37 | 144 |
Msa0323290 | AT1G19850.2 | 31.129 | 363 | 213 | 12 | 1 | 337 | 26 | 377 | 2.57e-37 | 144 |
Msa0323290 | AT5G62000.2 | 29.973 | 377 | 226 | 14 | 16 | 365 | 58 | 423 | 3.78e-37 | 143 |
Msa0323290 | AT5G62000.5 | 29.973 | 377 | 226 | 14 | 16 | 365 | 58 | 423 | 3.78e-37 | 143 |
Msa0323290 | AT5G62000.3 | 29.973 | 377 | 226 | 14 | 16 | 365 | 58 | 423 | 3.78e-37 | 143 |
Msa0323290 | AT5G62000.1 | 29.973 | 377 | 226 | 14 | 16 | 365 | 58 | 423 | 3.78e-37 | 143 |
Msa0323290 | AT5G62000.4 | 29.973 | 377 | 226 | 14 | 16 | 365 | 58 | 423 | 3.93e-37 | 143 |
Msa0323290 | AT1G19220.1 | 29.885 | 348 | 210 | 11 | 16 | 339 | 20 | 357 | 5.05e-37 | 143 |
Msa0323290 | AT1G30330.1 | 30.556 | 360 | 216 | 11 | 16 | 350 | 20 | 370 | 9.95e-37 | 142 |
Msa0323290 | AT1G30330.3 | 30.556 | 360 | 216 | 11 | 16 | 350 | 22 | 372 | 1.04e-36 | 142 |
Msa0323290 | AT1G30330.2 | 30.556 | 360 | 216 | 11 | 16 | 350 | 22 | 372 | 1.04e-36 | 142 |
Msa0323290 | AT5G60450.2 | 30.114 | 352 | 212 | 10 | 14 | 337 | 36 | 381 | 3.44e-36 | 140 |
Msa0323290 | AT5G60450.1 | 30.000 | 350 | 211 | 10 | 16 | 337 | 62 | 405 | 7.82e-36 | 139 |
Msa0323290 | AT1G59750.4 | 28.841 | 371 | 212 | 13 | 19 | 356 | 22 | 373 | 8.18e-35 | 135 |
Msa0323290 | AT1G59750.1 | 28.841 | 371 | 212 | 13 | 19 | 356 | 22 | 373 | 9.57e-35 | 135 |
Msa0323290 | AT1G59750.3 | 28.841 | 371 | 212 | 13 | 19 | 356 | 22 | 373 | 9.57e-35 | 135 |
Msa0323290 | AT1G59750.2 | 28.841 | 371 | 212 | 13 | 19 | 356 | 22 | 373 | 9.72e-35 | 135 |
Msa0323290 | AT1G34170.1 | 29.598 | 348 | 206 | 13 | 14 | 337 | 20 | 352 | 9.61e-34 | 131 |
Msa0323290 | AT1G34170.2 | 29.464 | 336 | 196 | 13 | 14 | 337 | 20 | 326 | 9.26e-32 | 125 |
Msa0323290 | AT1G34170.3 | 29.586 | 338 | 193 | 13 | 14 | 337 | 20 | 326 | 2.10e-31 | 125 |
Msa0323290 | AT3G61830.2 | 30.314 | 287 | 174 | 9 | 70 | 337 | 24 | 303 | 1.79e-27 | 114 |
Msa0323290 | AT1G43950.1 | 32.110 | 218 | 122 | 7 | 14 | 222 | 22 | 222 | 9.80e-27 | 106 |
Msa0323290 | AT2G33860.2 | 32.479 | 234 | 132 | 8 | 126 | 337 | 2 | 231 | 1.27e-26 | 110 |
Msa0323290 | AT5G37020.3 | 30.901 | 233 | 138 | 8 | 126 | 337 | 31 | 261 | 1.82e-24 | 105 |
Msa0323290 | AT2G46530.2 | 29.889 | 271 | 164 | 10 | 122 | 373 | 33 | 296 | 1.00e-22 | 100 |
Msa0323290 | ATMG00940.1 | 38.843 | 121 | 63 | 6 | 211 | 328 | 44 | 156 | 1.00e-12 | 66.2 |
Find 106 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAATGCAACTTTGGTATT+TGG | 0.133681 | 2_4:-26957434 | None:intergenic |
TCTCAATATCATAGGTTAAC+TGG | 0.218607 | 2_4:+26959921 | Msa0323290:intron |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2_4:-26958191 | None:intergenic |
TATCTCGTACGTCTAATTTA+TGG | 0.240815 | 2_4:+26958261 | Msa0323290:CDS |
CACCATGGGCTGACTCTTCT+TGG | 0.263929 | 2_4:-26959968 | None:intergenic |
CTCATCATCGTCGTTGCAAT+TGG | 0.314881 | 2_4:-26957688 | None:intergenic |
GTAGAGATTGTCCCTTGATA+TGG | 0.324016 | 2_4:-26958236 | None:intergenic |
AACGACGATGATGAGGTAAT+TGG | 0.328138 | 2_4:+26957696 | Msa0323290:CDS |
GCTGCTGTTGGTGCTGGTGC+TGG | 0.335243 | 2_4:-26957359 | None:intergenic |
GTATGCTTGCTTACATTAGT+AGG | 0.336336 | 2_4:-26957741 | None:intergenic |
GCATCAACATCATTGGTTAT+TGG | 0.339316 | 2_4:-26957639 | None:intergenic |
TTAACAAACGAACTCCATTC+AGG | 0.339363 | 2_4:-26957915 | None:intergenic |
CGCATGTCCACCCTCAAATC+TGG | 0.363208 | 2_4:+26957388 | Msa0323290:CDS |
CAACGGGAAAATTATTTGTT+GGG | 0.375166 | 2_4:+26957985 | Msa0323290:CDS |
ATGGTTGCTGCTGTTGGTGC+TGG | 0.385990 | 2_4:-26957365 | None:intergenic |
CAAATCTGGCAGACATTAAC+CGG | 0.388348 | 2_4:+26957402 | Msa0323290:CDS |
TAAACTCTTGAATGCAACTT+TGG | 0.402834 | 2_4:-26957441 | None:intergenic |
TCAACGGGAAAATTATTTGT+TGG | 0.404341 | 2_4:+26957984 | Msa0323290:CDS |
CTGACGTTCATGGTGAAGTC+TGG | 0.406535 | 2_4:+26957841 | Msa0323290:CDS |
CTCCTCGTCACTGACGTTCA+TGG | 0.407231 | 2_4:+26957831 | Msa0323290:CDS |
AATGGAGTTCGTTTGTTAAG+AGG | 0.407313 | 2_4:+26957919 | Msa0323290:CDS |
AATAATGACCGGAGGGAGTA+AGG | 0.421451 | 2_4:-26960097 | None:intergenic |
TAATTTATGGCGCATGCTAC+AGG | 0.422222 | 2_4:+26958274 | Msa0323290:CDS |
ATTTCCCTCAAACGTGCATC+AGG | 0.435910 | 2_4:+26960001 | Msa0323290:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2_4:+26958043 | Msa0323290:CDS |
ACTATCCTCGAGGTGATGAT+TGG | 0.444363 | 2_4:+26958111 | Msa0323290:CDS |
GACACAGGCATCAACATCAT+TGG | 0.444932 | 2_4:-26957646 | None:intergenic |
GTTAATGTCTGCCAGATTTG+AGG | 0.445255 | 2_4:-26957399 | None:intergenic |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2_4:-26958190 | None:intergenic |
GATATAAAACACGTTTCTCT+TGG | 0.446560 | 2_4:-26957892 | None:intergenic |
TGCCCCATTAAGTGATGAAA+AGG | 0.448788 | 2_4:+26960069 | Msa0323290:CDS |
AGGTAATTGGTTCGTTTACA+AGG | 0.453827 | 2_4:+26957709 | Msa0323290:CDS |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2_4:+26958210 | Msa0323290:CDS |
TGGGAACCTCATGAGGGTCT+TGG | 0.457592 | 2_4:-26957668 | None:intergenic |
AATTATTTGTTGGGATTCGC+AGG | 0.462606 | 2_4:+26957994 | Msa0323290:CDS |
GTCGACCTGATGCACGTTTG+AGG | 0.464249 | 2_4:-26960006 | None:intergenic |
GGATAGTAAACAATTTCAAA+TGG | 0.472676 | 2_4:-26958095 | None:intergenic |
AGTAATGGAGGCAGTGAAGT+TGG | 0.472794 | 2_4:+26958058 | Msa0323290:CDS |
TTAATGTCTGCCAGATTTGA+GGG | 0.479203 | 2_4:-26957398 | None:intergenic |
ATGAATCAATGAAAATTCAA+TGG | 0.482116 | 2_4:+26958165 | Msa0323290:CDS |
GGAGTGAATGTAAGCATTGG+AGG | 0.486006 | 2_4:-26957508 | None:intergenic |
TCTCTTGGCAAACCCGTGGC+AGG | 0.490609 | 2_4:-26957877 | None:intergenic |
TCATCATCGTCGTTGCAATT+GGG | 0.492508 | 2_4:-26957687 | None:intergenic |
GAAAATATCTTCCCTCCGCT+TGG | 0.492876 | 2_4:+26957789 | Msa0323290:CDS |
TAGAGATTGTCCCTTGATAT+GGG | 0.494859 | 2_4:-26958235 | None:intergenic |
CTCAATATCATAGGTTAACT+GGG | 0.496428 | 2_4:+26959922 | Msa0323290:intron |
ATAATGACCGGAGGGAGTAA+GGG | 0.498169 | 2_4:-26960096 | None:intergenic |
CTCATGAGGGTCTTGGACAC+AGG | 0.498403 | 2_4:-26957661 | None:intergenic |
TATGCTTGCTTACATTAGTA+GGG | 0.498565 | 2_4:-26957740 | None:intergenic |
TGGTATTTGGACAGCAGTGC+CGG | 0.499421 | 2_4:-26957421 | None:intergenic |
TGGCAAACCCGTGGCAGGCA+TGG | 0.500790 | 2_4:-26957872 | None:intergenic |
AAGTTTCACCATGCCTGCCA+CGG | 0.506565 | 2_4:+26957864 | Msa0323290:CDS |
TCGACCTGATGCACGTTTGA+GGG | 0.510461 | 2_4:-26960005 | None:intergenic |
TAACAAACGAACTCCATTCA+GGG | 0.512751 | 2_4:-26957914 | None:intergenic |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2_4:+26958224 | Msa0323290:CDS |
AGTTTCACCATGCCTGCCAC+GGG | 0.517459 | 2_4:+26957865 | Msa0323290:CDS |
AGGAATCCCCTTACTCCCTC+CGG | 0.517727 | 2_4:+26960089 | Msa0323290:CDS |
ATGTAAGCATTGGAGGAGGA+AGG | 0.526102 | 2_4:-26957501 | None:intergenic |
CATGCGATGGTTGCTGCTGT+TGG | 0.533873 | 2_4:-26957371 | None:intergenic |
TTGCAATTGGGAACCTCATG+AGG | 0.534875 | 2_4:-26957675 | None:intergenic |
TAAGCATTGGAGGAGGAAGG+AGG | 0.538830 | 2_4:-26957498 | None:intergenic |
GGAGGCAGTGAAGTTGGCAG+AGG | 0.547497 | 2_4:+26958064 | Msa0323290:CDS |
TATCTTCCCTCCGCTTGGCA+TGG | 0.558368 | 2_4:+26957794 | Msa0323290:CDS |
CGCCGATCCTCACACTGATG+AGG | 0.560935 | 2_4:+26957593 | Msa0323290:CDS |
AAGGGAGTGAATGTAAGCAT+TGG | 0.561164 | 2_4:-26957511 | None:intergenic |
CTGGTGCTGGTTGAGAGACA+TGG | 0.567756 | 2_4:-26957346 | None:intergenic |
GCATATTCTAAGTGGCCTTG+TGG | 0.574209 | 2_4:-26957471 | None:intergenic |
GTGAATGTAAGCATTGGAGG+AGG | 0.588009 | 2_4:-26957505 | None:intergenic |
GTTGGAGAAGGCAGTAATGG+AGG | 0.592416 | 2_4:+26958046 | Msa0323290:CDS |
TGGGATTCGCAGGAAAGCCG+CGG | 0.593939 | 2_4:+26958004 | Msa0323290:CDS |
GGAGCAAAAGAAAGATGAGT+TGG | 0.594103 | 2_4:+26958028 | Msa0323290:CDS |
TGCTTATAATAATGACCGGA+GGG | 0.594677 | 2_4:-26960104 | None:intergenic |
GACCTCATCAGTGTGAGGAT+CGG | 0.595759 | 2_4:-26957595 | None:intergenic |
GAAATAAGTTCAACCCACCA+TGG | 0.601634 | 2_4:-26959983 | None:intergenic |
TAATGACCGGAGGGAGTAAG+GGG | 0.604346 | 2_4:-26960095 | None:intergenic |
AAAGAAAGATGAGTTGGAGA+AGG | 0.605720 | 2_4:+26958034 | Msa0323290:CDS |
AAATCTCCATGCCAAGCGGA+GGG | 0.609417 | 2_4:-26957800 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2_4:+26958225 | Msa0323290:CDS |
GAGATGATACAGATAGTGAA+AGG | 0.609814 | 2_4:-26957555 | None:intergenic |
AAATAAGTTCAACCCACCAT+GGG | 0.611317 | 2_4:-26959982 | None:intergenic |
GAAATCTCCATGCCAAGCGG+AGG | 0.617181 | 2_4:-26957801 | None:intergenic |
AAGAAGAGTCAGCCCATGGT+GGG | 0.617483 | 2_4:+26959970 | Msa0323290:CDS |
CACCATGAACGTCAGTGACG+AGG | 0.617900 | 2_4:-26957833 | None:intergenic |
CGTTTCTCTTGGCAAACCCG+TGG | 0.618791 | 2_4:-26957881 | None:intergenic |
AAAACGTTGAAGATCATGAA+GGG | 0.620045 | 2_4:-26957529 | None:intergenic |
CACTATCTGTATCATCTCCG+CGG | 0.622122 | 2_4:+26957560 | Msa0323290:CDS |
GAGGAGAAGCATATTCTAAG+TGG | 0.626940 | 2_4:-26957479 | None:intergenic |
GAAAACGTTGAAGATCATGA+AGG | 0.628457 | 2_4:-26957530 | None:intergenic |
CAATTGCAACGACGATGATG+AGG | 0.630770 | 2_4:+26957689 | Msa0323290:CDS |
GAAATTGTTTACTATCCTCG+AGG | 0.641156 | 2_4:+26958101 | Msa0323290:CDS |
TGCAATTGGGAACCTCATGA+GGG | 0.643730 | 2_4:-26957674 | None:intergenic |
ATTTGAGGGTGGACATGCGA+TGG | 0.643879 | 2_4:-26957384 | None:intergenic |
TTCCAAGAAGAGTCAGCCCA+TGG | 0.644012 | 2_4:+26959966 | Msa0323290:CDS |
ATGCTTGCTTACATTAGTAG+GGG | 0.652528 | 2_4:-26957739 | None:intergenic |
CAAGAAGAGTCAGCCCATGG+TGG | 0.652994 | 2_4:+26959969 | Msa0323290:CDS |
TTGCTTATAATAATGACCGG+AGG | 0.658642 | 2_4:-26960105 | None:intergenic |
CATGAACGTCAGTGACGAGG+AGG | 0.677277 | 2_4:-26957830 | None:intergenic |
GCGAAGACCTCATCAGTGTG+AGG | 0.682334 | 2_4:-26957600 | None:intergenic |
ATGTCTGCCAGATTTGAGGG+TGG | 0.682807 | 2_4:-26957395 | None:intergenic |
ATCGGCGAGGAGATCAACCG+CGG | 0.684227 | 2_4:-26957577 | None:intergenic |
TGAGAAATCTCCATGCCAAG+CGG | 0.686661 | 2_4:-26957804 | None:intergenic |
CTGTGTCCAAGACCCTCATG+AGG | 0.688345 | 2_4:+26957662 | Msa0323290:CDS |
GATTCGCAGGAAAGCCGCGG+CGG | 0.692782 | 2_4:+26958007 | Msa0323290:CDS |
TCATGCCAATCATCACCTCG+AGG | 0.713899 | 2_4:-26958116 | None:intergenic |
AAGAGGAAGAAACTCGACGT+CGG | 0.718798 | 2_4:+26957936 | Msa0323290:CDS |
CATCAGTGTGAGGATCGGCG+AGG | 0.752555 | 2_4:-26957590 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTCTTCTTTTTTTTTTTT+TGG | + | chr2_4:26958301-26958320 | Msa0323290:intron | 10.0% |
!!! | AATGATTTTTTTTTTTTGAA+AGG | - | chr2_4:26958867-26958886 | None:intergenic | 10.0% |
!!! | AATAATTTTAGAATTACTGT+GGG | - | chr2_4:26958519-26958538 | None:intergenic | 15.0% |
!!! | TAATAATTTTAGAATTACTG+TGG | - | chr2_4:26958520-26958539 | None:intergenic | 15.0% |
!! | ATTATAGTTAAAGTTTATAG+TGG | + | chr2_4:26958687-26958706 | Msa0323290:intron | 15.0% |
!!! | TAGTTATACAATTTTAACTA+GGG | + | chr2_4:26958907-26958926 | Msa0323290:intron | 15.0% |
!!! | AGTATAAAAATTTACTTTTG+CGG | - | chr2_4:26959103-26959122 | None:intergenic | 15.0% |
!! | TGCATTAATATATTTCTTAT+TGG | + | chr2_4:26959151-26959170 | Msa0323290:intron | 15.0% |
!!! | TTATCAAACCTATTATTTTA+CGG | + | chr2_4:26959295-26959314 | Msa0323290:intron | 15.0% |
!! | ATGATATTGAGATAAAAAAA+GGG | - | chr2_4:26959913-26959932 | None:intergenic | 15.0% |
!! | TATGATATTGAGATAAAAAA+AGG | - | chr2_4:26959914-26959933 | None:intergenic | 15.0% |
!!! | TTTTTTTATCTCAATATCAT+AGG | + | chr2_4:26959913-26959932 | Msa0323290:intron | 15.0% |
!! | ATGAATCAATGAAAATTCAA+TGG | + | chr2_4:26958165-26958184 | Msa0323290:CDS | 20.0% |
!! | CTAATATTTATGAAGCAATT+AGG | - | chr2_4:26958425-26958444 | None:intergenic | 20.0% |
!!! | TGTCGATTAATTTAGTATTT+TGG | + | chr2_4:26958562-26958581 | Msa0323290:intron | 20.0% |
!!! | GTCGATTAATTTAGTATTTT+GGG | + | chr2_4:26958563-26958582 | Msa0323290:intron | 20.0% |
!! | TAACTACATAGATTAAAACT+TGG | - | chr2_4:26958717-26958736 | None:intergenic | 20.0% |
!!! | GTAGTTATACAATTTTAACT+AGG | + | chr2_4:26958906-26958925 | Msa0323290:intron | 20.0% |
!!! | AGTTATACAATTTTAACTAG+GGG | + | chr2_4:26958908-26958927 | Msa0323290:intron | 20.0% |
!! | ATTACTCATGTTAAAATTAG+GGG | - | chr2_4:26959530-26959549 | None:intergenic | 20.0% |
!! | CATTACTCATGTTAAAATTA+GGG | - | chr2_4:26959531-26959550 | None:intergenic | 20.0% |
!! | TCATTACTCATGTTAAAATT+AGG | - | chr2_4:26958740-26958759 | None:intergenic | 20.0% |
!!! | AAATACTTTTAATGCAATGT+AGG | + | chr2_4:26959800-26959819 | Msa0323290:intron | 20.0% |
!!! | TTCTTATCGATTAAAAGTAT+TGG | - | chr2_4:26959841-26959860 | None:intergenic | 20.0% |
!! | TGTTTTCATGAAAAACTCAA+CGG | + | chr2_4:26957968-26957987 | Msa0323290:CDS | 25.0% |
! | GGATAGTAAACAATTTCAAA+TGG | - | chr2_4:26958098-26958117 | None:intergenic | 25.0% |
!! | TATGAAGTGTCATCTAATTA+TGG | - | chr2_4:26958369-26958388 | None:intergenic | 25.0% |
! | TCATTGTGAAGCAAAATAAA+CGG | - | chr2_4:26958397-26958416 | None:intergenic | 25.0% |
!!! | CAAAAATATTCGGTTTTTTG+CGG | - | chr2_4:26958992-26959011 | None:intergenic | 25.0% |
! | CAAACACATCCAAAAATATT+CGG | - | chr2_4:26959002-26959021 | None:intergenic | 25.0% |
!!! | AAAAATTTACTTTTGCGGTT+CGG | - | chr2_4:26959098-26959117 | None:intergenic | 25.0% |
! | TTCATACACCGTAAAATAAT+AGG | - | chr2_4:26959306-26959325 | None:intergenic | 25.0% |
! | AAAAATTACATGTTGCACTT+TGG | + | chr2_4:26959345-26959364 | Msa0323290:intron | 25.0% |
! | CAAATATATGCGGTTTAATT+TGG | - | chr2_4:26959387-26959406 | None:intergenic | 25.0% |
! | CAAATTAAACCGCATATATT+TGG | + | chr2_4:26959385-26959404 | Msa0323290:intron | 25.0% |
!! | ACATGATTTTTACTTTGGAT+CGG | + | chr2_4:26959461-26959480 | Msa0323290:intron | 25.0% |
!!! | TTCTAAGTTTTTTAGTTGAG+GGG | - | chr2_4:26960036-26960055 | None:intergenic | 25.0% |
!!! | GTTCTAAGTTTTTTAGTTGA+GGG | - | chr2_4:26960037-26960056 | None:intergenic | 25.0% |
!!! | AGTTCTAAGTTTTTTAGTTG+AGG | - | chr2_4:26960038-26960057 | None:intergenic | 25.0% |
!! | ATTCCTTTTCATCACTTAAT+GGG | - | chr2_4:26960075-26960094 | None:intergenic | 25.0% |
TTGAATGCAACTTTGGTATT+TGG | - | chr2_4:26957437-26957456 | None:intergenic | 30.0% | |
TAAACTCTTGAATGCAACTT+TGG | - | chr2_4:26957444-26957463 | None:intergenic | 30.0% | |
! | AGAGTTTACTATTTTCCACA+AGG | + | chr2_4:26957456-26957475 | Msa0323290:CDS | 30.0% |
AAAACGTTGAAGATCATGAA+GGG | - | chr2_4:26957532-26957551 | None:intergenic | 30.0% | |
TATGCTTGCTTACATTAGTA+GGG | - | chr2_4:26957743-26957762 | None:intergenic | 30.0% | |
! | AGCATACATTTTACATACCT+CGG | + | chr2_4:26957757-26957776 | Msa0323290:CDS | 30.0% |
GATATAAAACACGTTTCTCT+TGG | - | chr2_4:26957895-26957914 | None:intergenic | 30.0% | |
! | GTTTTCATGAAAAACTCAAC+GGG | + | chr2_4:26957969-26957988 | Msa0323290:CDS | 30.0% |
TCAACGGGAAAATTATTTGT+TGG | + | chr2_4:26957984-26958003 | Msa0323290:CDS | 30.0% | |
CAACGGGAAAATTATTTGTT+GGG | + | chr2_4:26957985-26958004 | Msa0323290:CDS | 30.0% | |
TCATCTTAACTCTCATTCTA+GGG | - | chr2_4:26958193-26958212 | None:intergenic | 30.0% | |
TTCATCTTAACTCTCATTCT+AGG | - | chr2_4:26958194-26958213 | None:intergenic | 30.0% | |
TGAAGACTGATAAATCTTCA+AGG | + | chr2_4:26958210-26958229 | Msa0323290:CDS | 30.0% | |
TATCTCGTACGTCTAATTTA+TGG | + | chr2_4:26958261-26958280 | Msa0323290:CDS | 30.0% | |
CATTGTGAAGCAAAATAAAC+GGG | - | chr2_4:26958396-26958415 | None:intergenic | 30.0% | |
TATTAGAGCAAGTATGTTAC+TGG | + | chr2_4:26958535-26958554 | Msa0323290:intron | 30.0% | |
! | CGCAAAAAACCGAATATTTT+TGG | + | chr2_4:26958990-26959009 | Msa0323290:intron | 30.0% |
!!! | CGAATATTTTTGGATGTGTT+TGG | + | chr2_4:26959000-26959019 | Msa0323290:intron | 30.0% |
!!! | GTTTAATTTGGATCGGTTTT+TGG | - | chr2_4:26959375-26959394 | None:intergenic | 30.0% |
!! | ATATGCGGTTTAATTTGGAT+CGG | - | chr2_4:26959382-26959401 | None:intergenic | 30.0% |
TAAACCGCATATATTTGGAT+CGG | + | chr2_4:26959390-26959409 | Msa0323290:intron | 30.0% | |
TCCAAAGTAAAAATCATGTG+CGG | - | chr2_4:26959460-26959479 | None:intergenic | 30.0% | |
ATGCACTATTGTTCAAATGA+GGG | - | chr2_4:26959589-26959608 | None:intergenic | 30.0% | |
AATGCACTATTGTTCAAATG+AGG | - | chr2_4:26959590-26959609 | None:intergenic | 30.0% | |
TGTAATATCTCATGTATGTG+TGG | + | chr2_4:26959657-26959676 | Msa0323290:intron | 30.0% | |
GTAATATCTCATGTATGTGT+GGG | + | chr2_4:26959658-26959677 | Msa0323290:intron | 30.0% | |
TCTCAATATCATAGGTTAAC+TGG | + | chr2_4:26959921-26959940 | Msa0323290:intron | 30.0% | |
CTCAATATCATAGGTTAACT+GGG | + | chr2_4:26959922-26959941 | Msa0323290:intron | 30.0% | |
! | TTCCTTTTCATCACTTAATG+GGG | - | chr2_4:26960074-26960093 | None:intergenic | 30.0% |
! | GATTCCTTTTCATCACTTAA+TGG | - | chr2_4:26960076-26960095 | None:intergenic | 30.0% |
TTAATGTCTGCCAGATTTGA+GGG | - | chr2_4:26957401-26957420 | None:intergenic | 35.0% | |
GAAAACGTTGAAGATCATGA+AGG | - | chr2_4:26957533-26957552 | None:intergenic | 35.0% | |
GAGATGATACAGATAGTGAA+AGG | - | chr2_4:26957558-26957577 | None:intergenic | 35.0% | |
! | GCATCAACATCATTGGTTAT+TGG | - | chr2_4:26957642-26957661 | None:intergenic | 35.0% |
!! | AGGTAATTGGTTCGTTTACA+AGG | + | chr2_4:26957709-26957728 | Msa0323290:CDS | 35.0% |
ATGCTTGCTTACATTAGTAG+GGG | - | chr2_4:26957742-26957761 | None:intergenic | 35.0% | |
GTATGCTTGCTTACATTAGT+AGG | - | chr2_4:26957744-26957763 | None:intergenic | 35.0% | |
! | ATATTTTCAGCACAAAACCG+AGG | - | chr2_4:26957777-26957796 | None:intergenic | 35.0% |
! | ACGTGTTTTATATCCCTGAA+TGG | + | chr2_4:26957901-26957920 | Msa0323290:CDS | 35.0% |
TAACAAACGAACTCCATTCA+GGG | - | chr2_4:26957917-26957936 | None:intergenic | 35.0% | |
TTAACAAACGAACTCCATTC+AGG | - | chr2_4:26957918-26957937 | None:intergenic | 35.0% | |
! | AATGGAGTTCGTTTGTTAAG+AGG | + | chr2_4:26957919-26957938 | Msa0323290:CDS | 35.0% |
! | AATTATTTGTTGGGATTCGC+AGG | + | chr2_4:26957994-26958013 | Msa0323290:CDS | 35.0% |
! | AAAGAAAGATGAGTTGGAGA+AGG | + | chr2_4:26958034-26958053 | Msa0323290:CDS | 35.0% |
GAAATTGTTTACTATCCTCG+AGG | + | chr2_4:26958101-26958120 | Msa0323290:CDS | 35.0% | |
! | TGATTGGCATGATTTTGTAG+TGG | + | chr2_4:26958127-26958146 | Msa0323290:CDS | 35.0% |
TAGAGATTGTCCCTTGATAT+GGG | - | chr2_4:26958238-26958257 | None:intergenic | 35.0% | |
TATATTACTTTGTCCCCTAC+AGG | + | chr2_4:26958487-26958506 | Msa0323290:intron | 35.0% | |
!!! | TTTGCGGTCTTATTTTGGAT+CGG | - | chr2_4:26958948-26958967 | None:intergenic | 35.0% |
!!! | GGTTTTCGGTTTTTTTGGAT+CGG | - | chr2_4:26958971-26958990 | None:intergenic | 35.0% |
! | TTTGCGGTTTTCGGTTTTTT+TGG | - | chr2_4:26958976-26958995 | None:intergenic | 35.0% |
!!! | ATTCGGTTTTTTGCGGTTTT+CGG | - | chr2_4:26958985-26959004 | None:intergenic | 35.0% |
!! | GATGTGTTTGGATGTTGTTT+TGG | + | chr2_4:26959012-26959031 | Msa0323290:intron | 35.0% |
TTTGGAAAAACCGCTATGAT+CGG | + | chr2_4:26959030-26959049 | Msa0323290:intron | 35.0% | |
AGTAAAAATCATGTGCGGTT+CGG | - | chr2_4:26959455-26959474 | None:intergenic | 35.0% | |
! | ACCGCACATGATTTTTACTT+TGG | + | chr2_4:26959456-26959475 | Msa0323290:intron | 35.0% |
CAATAGTGCATTGCAGTTAT+TGG | + | chr2_4:26959598-26959617 | Msa0323290:intron | 35.0% | |
!!! | TGCATTGCAGTTATTGGTTT+TGG | + | chr2_4:26959604-26959623 | Msa0323290:intron | 35.0% |
AAATAAGTTCAACCCACCAT+GGG | - | chr2_4:26959985-26960004 | None:intergenic | 35.0% | |
!!! | AGTTTTTTAGTTGAGGGGAA+TGG | - | chr2_4:26960031-26960050 | None:intergenic | 35.0% |
GTTAATGTCTGCCAGATTTG+AGG | - | chr2_4:26957402-26957421 | None:intergenic | 40.0% | |
CAAATCTGGCAGACATTAAC+CGG | + | chr2_4:26957402-26957421 | Msa0323290:CDS | 40.0% | |
! | GAGGAGAAGCATATTCTAAG+TGG | - | chr2_4:26957482-26957501 | None:intergenic | 40.0% |
AAGGGAGTGAATGTAAGCAT+TGG | - | chr2_4:26957514-26957533 | None:intergenic | 40.0% | |
TCATCATCGTCGTTGCAATT+GGG | - | chr2_4:26957690-26957709 | None:intergenic | 40.0% | |
AACGACGATGATGAGGTAAT+TGG | + | chr2_4:26957696-26957715 | Msa0323290:CDS | 40.0% | |
GGAGCAAAAGAAAGATGAGT+TGG | + | chr2_4:26958028-26958047 | Msa0323290:CDS | 40.0% | |
TCTTCAAGGATCCCATATCA+AGG | + | chr2_4:26958224-26958243 | Msa0323290:CDS | 40.0% | |
CTTCAAGGATCCCATATCAA+GGG | + | chr2_4:26958225-26958244 | Msa0323290:CDS | 40.0% | |
GTAGAGATTGTCCCTTGATA+TGG | - | chr2_4:26958239-26958258 | None:intergenic | 40.0% | |
TAATTTATGGCGCATGCTAC+AGG | + | chr2_4:26958274-26958293 | Msa0323290:CDS | 40.0% | |
!!! | GGTCTTATTTTGGATCGGTT+TGG | - | chr2_4:26958943-26958962 | None:intergenic | 40.0% |
!!! | ATCGGTTTGCGGTCTTATTT+TGG | - | chr2_4:26958953-26958972 | None:intergenic | 40.0% |
!!! | GGTTTTTTTGGATCGGTTTG+CGG | - | chr2_4:26958964-26958983 | None:intergenic | 40.0% |
AAAAACCGCTATGATCGGAT+CGG | + | chr2_4:26959035-26959054 | Msa0323290:intron | 40.0% | |
!!! | TTTACTTTTGCGGTTCGGTT+TGG | - | chr2_4:26959093-26959112 | None:intergenic | 40.0% |
CGATCCGATCCAAATATATG+CGG | - | chr2_4:26959397-26959416 | None:intergenic | 40.0% | |
CGCATATATTTGGATCGGAT+CGG | + | chr2_4:26959395-26959414 | Msa0323290:intron | 40.0% | |
ATATTTGGATCGGATCGGTT+CGG | + | chr2_4:26959400-26959419 | Msa0323290:intron | 40.0% | |
!! | GTTAAAATTAGGGGTGTTCG+CGG | - | chr2_4:26959521-26959540 | None:intergenic | 40.0% |
ATATCTCATGTATGTGTGGG+TGG | + | chr2_4:26959661-26959680 | Msa0323290:intron | 40.0% | |
GAAATAAGTTCAACCCACCA+TGG | - | chr2_4:26959986-26960005 | None:intergenic | 40.0% | |
TGCCCCATTAAGTGATGAAA+AGG | + | chr2_4:26960069-26960088 | Msa0323290:CDS | 40.0% | |
! | GCATATTCTAAGTGGCCTTG+TGG | - | chr2_4:26957474-26957493 | None:intergenic | 45.0% |
!! | ATGTAAGCATTGGAGGAGGA+AGG | - | chr2_4:26957504-26957523 | None:intergenic | 45.0% |
!! | GTGAATGTAAGCATTGGAGG+AGG | - | chr2_4:26957508-26957527 | None:intergenic | 45.0% |
!! | GGAGTGAATGTAAGCATTGG+AGG | - | chr2_4:26957511-26957530 | None:intergenic | 45.0% |
CACTATCTGTATCATCTCCG+CGG | + | chr2_4:26957560-26957579 | Msa0323290:CDS | 45.0% | |
GACACAGGCATCAACATCAT+TGG | - | chr2_4:26957649-26957668 | None:intergenic | 45.0% | |
TGCAATTGGGAACCTCATGA+GGG | - | chr2_4:26957677-26957696 | None:intergenic | 45.0% | |
TTGCAATTGGGAACCTCATG+AGG | - | chr2_4:26957678-26957697 | None:intergenic | 45.0% | |
CTCATCATCGTCGTTGCAAT+TGG | - | chr2_4:26957691-26957710 | None:intergenic | 45.0% | |
CAATTGCAACGACGATGATG+AGG | + | chr2_4:26957689-26957708 | Msa0323290:CDS | 45.0% | |
GAAAATATCTTCCCTCCGCT+TGG | + | chr2_4:26957789-26957808 | Msa0323290:CDS | 45.0% | |
TGAGAAATCTCCATGCCAAG+CGG | - | chr2_4:26957807-26957826 | None:intergenic | 45.0% | |
AAGAGGAAGAAACTCGACGT+CGG | + | chr2_4:26957936-26957955 | Msa0323290:CDS | 45.0% | |
! | TGAGTTGGAGAAGGCAGTAA+TGG | + | chr2_4:26958043-26958062 | Msa0323290:CDS | 45.0% |
! | AGTAATGGAGGCAGTGAAGT+TGG | + | chr2_4:26958058-26958077 | Msa0323290:CDS | 45.0% |
ACTATCCTCGAGGTGATGAT+TGG | + | chr2_4:26958111-26958130 | Msa0323290:CDS | 45.0% | |
ACTGTGGGACTTATCCTGTA+GGG | - | chr2_4:26958504-26958523 | None:intergenic | 45.0% | |
TACTGTGGGACTTATCCTGT+AGG | - | chr2_4:26958505-26958524 | None:intergenic | 45.0% | |
GAAATCCGATCCGATCATAG+CGG | - | chr2_4:26959043-26959062 | None:intergenic | 45.0% | |
GCTATGATCGGATCGGATTT+CGG | + | chr2_4:26959042-26959061 | Msa0323290:intron | 45.0% | |
!!! | GGTTCGGTTCGGTTTTGAAA+AGG | - | chr2_4:26959072-26959091 | None:intergenic | 45.0% |
!!! | TTTTGCGGTTCGGTTTGGTT+CGG | - | chr2_4:26959088-26959107 | None:intergenic | 45.0% |
!! | AAATCATGTGCGGTTCGGTT+CGG | - | chr2_4:26959450-26959469 | None:intergenic | 45.0% |
!!! | TTCGGTTTGGATCGGTTTTG+AGG | - | chr2_4:26959498-26959517 | None:intergenic | 45.0% |
ATTTCCCTCAAACGTGCATC+AGG | + | chr2_4:26960001-26960020 | Msa0323290:CDS | 45.0% | |
ATAATGACCGGAGGGAGTAA+GGG | - | chr2_4:26960099-26960118 | None:intergenic | 45.0% | |
AATAATGACCGGAGGGAGTA+AGG | - | chr2_4:26960100-26960119 | None:intergenic | 45.0% | |
ATTTGAGGGTGGACATGCGA+TGG | - | chr2_4:26957387-26957406 | None:intergenic | 50.0% | |
ATGTCTGCCAGATTTGAGGG+TGG | - | chr2_4:26957398-26957417 | None:intergenic | 50.0% | |
TGGTATTTGGACAGCAGTGC+CGG | - | chr2_4:26957424-26957443 | None:intergenic | 50.0% | |
!! | TAAGCATTGGAGGAGGAAGG+AGG | - | chr2_4:26957501-26957520 | None:intergenic | 50.0% |
GACCTCATCAGTGTGAGGAT+CGG | - | chr2_4:26957598-26957617 | None:intergenic | 50.0% | |
AAATCTCCATGCCAAGCGGA+GGG | - | chr2_4:26957803-26957822 | None:intergenic | 50.0% | |
CTGACGTTCATGGTGAAGTC+TGG | + | chr2_4:26957841-26957860 | Msa0323290:CDS | 50.0% | |
AAGTTTCACCATGCCTGCCA+CGG | + | chr2_4:26957864-26957883 | Msa0323290:CDS | 50.0% | |
! | ATCTTTCTTTTGCTCCGCCG+CGG | - | chr2_4:26958024-26958043 | None:intergenic | 50.0% |
GTTGGAGAAGGCAGTAATGG+AGG | + | chr2_4:26958046-26958065 | Msa0323290:CDS | 50.0% | |
TCATGCCAATCATCACCTCG+AGG | - | chr2_4:26958119-26958138 | None:intergenic | 50.0% | |
CTGTGGGACTTATCCTGTAG+GGG | - | chr2_4:26958503-26958522 | None:intergenic | 50.0% | |
!! | AATTAGGGGTGTTCGCGGTT+CGG | - | chr2_4:26959516-26959535 | None:intergenic | 50.0% |
CTCATGTATGTGTGGGTGGA+TGG | + | chr2_4:26959665-26959684 | Msa0323290:intron | 50.0% | |
TGTATGTGTGGGTGGATGGA+TGG | + | chr2_4:26959669-26959688 | Msa0323290:intron | 50.0% | |
TTCCAAGAAGAGTCAGCCCA+TGG | + | chr2_4:26959966-26959985 | Msa0323290:CDS | 50.0% | |
AAGAAGAGTCAGCCCATGGT+GGG | + | chr2_4:26959970-26959989 | Msa0323290:CDS | 50.0% | |
TCGACCTGATGCACGTTTGA+GGG | - | chr2_4:26960008-26960027 | None:intergenic | 50.0% | |
TAATGACCGGAGGGAGTAAG+GGG | - | chr2_4:26960098-26960117 | None:intergenic | 50.0% | |
ATGGTTGCTGCTGTTGGTGC+TGG | - | chr2_4:26957368-26957387 | None:intergenic | 55.0% | |
CATGCGATGGTTGCTGCTGT+TGG | - | chr2_4:26957374-26957393 | None:intergenic | 55.0% | |
CGCATGTCCACCCTCAAATC+TGG | + | chr2_4:26957388-26957407 | Msa0323290:CDS | 55.0% | |
GCGAAGACCTCATCAGTGTG+AGG | - | chr2_4:26957603-26957622 | None:intergenic | 55.0% | |
CTCATGAGGGTCTTGGACAC+AGG | - | chr2_4:26957664-26957683 | None:intergenic | 55.0% | |
CTGTGTCCAAGACCCTCATG+AGG | + | chr2_4:26957662-26957681 | Msa0323290:CDS | 55.0% | |
TGGGAACCTCATGAGGGTCT+TGG | - | chr2_4:26957671-26957690 | None:intergenic | 55.0% | |
TATCTTCCCTCCGCTTGGCA+TGG | + | chr2_4:26957794-26957813 | Msa0323290:CDS | 55.0% | |
GAAATCTCCATGCCAAGCGG+AGG | - | chr2_4:26957804-26957823 | None:intergenic | 55.0% | |
CATGAACGTCAGTGACGAGG+AGG | - | chr2_4:26957833-26957852 | None:intergenic | 55.0% | |
CTCCTCGTCACTGACGTTCA+TGG | + | chr2_4:26957831-26957850 | Msa0323290:CDS | 55.0% | |
CACCATGAACGTCAGTGACG+AGG | - | chr2_4:26957836-26957855 | None:intergenic | 55.0% | |
AGTTTCACCATGCCTGCCAC+GGG | + | chr2_4:26957865-26957884 | Msa0323290:CDS | 55.0% | |
CGTTTCTCTTGGCAAACCCG+TGG | - | chr2_4:26957884-26957903 | None:intergenic | 55.0% | |
!! | CGGTTCGGTTTGGTTCGGTT+CGG | - | chr2_4:26959083-26959102 | None:intergenic | 55.0% |
!! | ATGTGCGGTTCGGTTCGGTT+TGG | - | chr2_4:26959445-26959464 | None:intergenic | 55.0% |
!! | GTTCGCGGTTCGGTTTGGAT+CGG | - | chr2_4:26959506-26959525 | None:intergenic | 55.0% |
! | CACCATGGGCTGACTCTTCT+TGG | - | chr2_4:26959971-26959990 | None:intergenic | 55.0% |
CAAGAAGAGTCAGCCCATGG+TGG | + | chr2_4:26959969-26959988 | Msa0323290:CDS | 55.0% | |
GTCGACCTGATGCACGTTTG+AGG | - | chr2_4:26960009-26960028 | None:intergenic | 55.0% | |
AGGAATCCCCTTACTCCCTC+CGG | + | chr2_4:26960089-26960108 | Msa0323290:CDS | 55.0% | |
ATCGGCGAGGAGATCAACCG+CGG | - | chr2_4:26957580-26957599 | None:intergenic | 60.0% | |
CATCAGTGTGAGGATCGGCG+AGG | - | chr2_4:26957593-26957612 | None:intergenic | 60.0% | |
CGCCGATCCTCACACTGATG+AGG | + | chr2_4:26957593-26957612 | Msa0323290:CDS | 60.0% | |
TCTCTTGGCAAACCCGTGGC+AGG | - | chr2_4:26957880-26957899 | None:intergenic | 60.0% | |
TGGGATTCGCAGGAAAGCCG+CGG | + | chr2_4:26958004-26958023 | Msa0323290:CDS | 60.0% | |
GGAGGCAGTGAAGTTGGCAG+AGG | + | chr2_4:26958064-26958083 | Msa0323290:CDS | 60.0% | |
!! | GCTGCTGTTGGTGCTGGTGC+TGG | - | chr2_4:26957362-26957381 | None:intergenic | 65.0% |
TGGCAAACCCGTGGCAGGCA+TGG | - | chr2_4:26957875-26957894 | None:intergenic | 65.0% | |
GATTCGCAGGAAAGCCGCGG+CGG | + | chr2_4:26958007-26958026 | Msa0323290:CDS | 65.0% | |
!! | GGGGTGTTCGCGGTTCGGTT+TGG | - | chr2_4:26959511-26959530 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 26957348 | 26960123 | 26957348 | ID=Msa0323290;Name=Msa0323290 |
chr2_4 | mRNA | 26957348 | 26960123 | 26957348 | ID=Msa0323290-mRNA-1;Parent=Msa0323290;Name=Msa0323290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|378 |
chr2_4 | exon | 26957348 | 26958295 | 26957348 | ID=Msa0323290-mRNA-1:exon:9370;Parent=Msa0323290-mRNA-1 |
chr2_4 | exon | 26959935 | 26960123 | 26959935 | ID=Msa0323290-mRNA-1:exon:9371;Parent=Msa0323290-mRNA-1 |
chr2_4 | CDS | 26957348 | 26958295 | 26957348 | ID=Msa0323290-mRNA-1:cds;Parent=Msa0323290-mRNA-1 |
chr2_4 | CDS | 26959935 | 26960123 | 26959935 | ID=Msa0323290-mRNA-1:cds;Parent=Msa0323290-mRNA-1 |
Gene Sequence |
Protein sequence |