Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323850 | XP_039688063.1 | 79.082 | 196 | 12 | 1 | 75 | 241 | 87 | 282 | 4.05e-101 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323850 | sp|Q9SZL8|FRS5_ARATH | 28.333 | 180 | 96 | 2 | 89 | 239 | 111 | 286 | 5.45e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0323850 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323850 | MtrunA17_Chr2g0287651 | 29.730 | 185 | 94 | 7 | 87 | 240 | 110 | 289 | 1.17e-15 | 78.2 |
| Msa0323850 | MtrunA17_Chr6g0458391 | 27.439 | 164 | 100 | 3 | 89 | 240 | 263 | 419 | 1.67e-12 | 68.6 |
| Msa0323850 | MtrunA17_Chr5g0448761 | 27.174 | 184 | 97 | 4 | 89 | 239 | 98 | 277 | 2.21e-12 | 68.2 |
| Msa0323850 | MtrunA17_Chr1g0202341 | 28.108 | 185 | 89 | 6 | 89 | 240 | 89 | 262 | 3.43e-12 | 67.8 |
| Msa0323850 | MtrunA17_Chr1g0203721 | 26.374 | 182 | 95 | 6 | 90 | 239 | 102 | 276 | 7.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323850 | AT4G38180.1 | 28.333 | 180 | 96 | 2 | 89 | 239 | 111 | 286 | 5.54e-17 | 82.8 |
| Msa0323850 | AT4G15090.1 | 28.161 | 174 | 88 | 4 | 97 | 240 | 97 | 263 | 2.74e-11 | 65.5 |
| Msa0323850 | AT4G15090.5 | 28.161 | 174 | 88 | 4 | 97 | 240 | 97 | 263 | 2.74e-11 | 65.5 |
| Msa0323850 | AT4G15090.3 | 28.161 | 174 | 88 | 4 | 97 | 240 | 97 | 263 | 2.74e-11 | 65.5 |
| Msa0323850 | AT4G15090.2 | 28.161 | 174 | 88 | 4 | 97 | 240 | 97 | 263 | 2.74e-11 | 65.5 |
| Msa0323850 | AT4G15090.4 | 28.161 | 174 | 88 | 4 | 97 | 240 | 97 | 263 | 2.74e-11 | 65.5 |
Find 42 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATACCATCCTTCTTATT+TGG | 0.179317 | 2_4:-28466941 | None:intergenic |
| TTGCTCATGCAAAATGTTTC+AGG | 0.233582 | 2_4:+28468056 | Msa0323850:CDS |
| TATGGTTAGCTCTATGTTAC+AGG | 0.280612 | 2_4:+28464534 | Msa0323850:CDS |
| TACCTCATACGCATAATAAA+AGG | 0.300798 | 2_4:-28467367 | None:intergenic |
| GAAAAGTGATGAACTTTGAT+AGG | 0.313592 | 2_4:-28464956 | None:intergenic |
| CGACGTTCCAACAATAGTTT+TGG | 0.315418 | 2_4:-28467832 | None:intergenic |
| TTCTAAACCAAAACTATTGT+TGG | 0.324685 | 2_4:+28467825 | Msa0323850:CDS |
| ATTCAAAGTCTTTAAATCTC+TGG | 0.356604 | 2_4:-28467283 | None:intergenic |
| TCTTCATGGTCGCTTATCTC+TGG | 0.394624 | 2_4:-28464505 | None:intergenic |
| GAAGTTCATTGACATGCAAT+TGG | 0.436656 | 2_4:+28464089 | Msa0323850:CDS |
| CTGAGAAACGGTCTCTTCAT+AGG | 0.440271 | 2_4:-28467109 | None:intergenic |
| TAACCATACGAAGGTCTTCA+TGG | 0.447216 | 2_4:-28464519 | None:intergenic |
| GAAAATAAGAAAGATGAAGA+TGG | 0.456611 | 2_4:+28467946 | Msa0323850:CDS |
| AATAGAAGCGCAACAACATA+AGG | 0.459100 | 2_4:+28467774 | Msa0323850:CDS |
| CTGTCAAGGTTAAAAGAAGA+AGG | 0.460452 | 2_4:+28466978 | Msa0323850:CDS |
| CTATGAAGAGACCGTTTCTC+AGG | 0.462729 | 2_4:+28467110 | Msa0323850:CDS |
| GCCAAATAAGAAGGATGGTA+TGG | 0.471408 | 2_4:+28466940 | Msa0323850:CDS |
| AAAATAAGAAAGATGAAGAT+GGG | 0.489609 | 2_4:+28467947 | Msa0323850:CDS |
| GGGTTATTTGCCAAATAAGA+AGG | 0.490320 | 2_4:+28466931 | Msa0323850:CDS |
| TGCAAAATGTTTCAGGCTGA+AGG | 0.500454 | 2_4:+28468063 | Msa0323850:CDS |
| TTCCTTGCAGACCTGAGAAA+CGG | 0.505141 | 2_4:-28467121 | None:intergenic |
| GCGTATGAGGTAGGTGAAGA+AGG | 0.506620 | 2_4:+28467378 | Msa0323850:CDS |
| TGAATTATCGATTGCATGCG+TGG | 0.517713 | 2_4:+28467912 | Msa0323850:CDS |
| ATTGGTACTTGTATTTGAGA+AGG | 0.518445 | 2_4:-28465017 | None:intergenic |
| TAAGAAAGATGAAGATGGGA+TGG | 0.532467 | 2_4:+28467951 | Msa0323850:CDS |
| AAAAGTGATGAACTTTGATA+GGG | 0.534988 | 2_4:-28464955 | None:intergenic |
| TATGATAATAGTGAGATCAA+TGG | 0.545302 | 2_4:+28467988 | Msa0323850:CDS |
| AGAAGGGCTTTAACAAGAGA+AGG | 0.550276 | 2_4:+28466995 | Msa0323850:CDS |
| TCGATTGCATGCGTGGATTG+TGG | 0.561800 | 2_4:+28467919 | Msa0323850:CDS |
| GACCGTTTCTCAGGTCTGCA+AGG | 0.589066 | 2_4:+28467119 | Msa0323850:CDS |
| TGTCAAGGTTAAAAGAAGAA+GGG | 0.589394 | 2_4:+28466979 | Msa0323850:CDS |
| GCAAAGTGAATCTACTGTCA+AGG | 0.592764 | 2_4:+28466964 | Msa0323850:CDS |
| TATTTGCCAAATAAGAAGGA+TGG | 0.599214 | 2_4:+28466935 | Msa0323850:CDS |
| TGTTGGAACGTCGTATCGAG+AGG | 0.606360 | 2_4:+28467842 | Msa0323850:CDS |
| GGTTGAATCAGAAGACAGAA+AGG | 0.614281 | 2_4:+28464918 | Msa0323850:intron |
| CGACCATGAAGACCTTCGTA+TGG | 0.614626 | 2_4:+28464516 | Msa0323850:CDS |
| TCATACGCATAATAAAAGGA+TGG | 0.619753 | 2_4:-28467363 | None:intergenic |
| ACACACCAAAATTATCTACA+AGG | 0.625740 | 2_4:-28468090 | None:intergenic |
| CTCTTCATAGGTGAAGCAAG+TGG | 0.639442 | 2_4:-28467097 | None:intergenic |
| TGAATCAGAAGACAGAAAGG+TGG | 0.642907 | 2_4:+28464921 | Msa0323850:CDS |
| TTATTAAAAGAACAGTGTGG+GGG | 0.706691 | 2_4:+28467216 | Msa0323850:intron |
| ACATAGAGCTAACCATACGA+AGG | 0.713235 | 2_4:-28464528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGAAAATTATTTATATTTA+TGG | + | chr2_4:28464125-28464144 | Msa0323850:intron | 10.0% |
| !!! | TTATAATTTTCACAAAAAAA+TGG | + | chr2_4:28465097-28465116 | Msa0323850:intron | 10.0% |
| !! | ATATTAAGAATGATAACATT+TGG | - | chr2_4:28464419-28464438 | None:intergenic | 15.0% |
| !! | TTTGTTAAACTTTATAAAGA+TGG | - | chr2_4:28464669-28464688 | None:intergenic | 15.0% |
| !!! | TTTAACAAAAATTGTAGTTT+TGG | + | chr2_4:28464680-28464699 | Msa0323850:intron | 15.0% |
| !!! | ACAAAAAAGTATGTAATTTT+TGG | + | chr2_4:28464822-28464841 | Msa0323850:intron | 15.0% |
| !! | CTATATAACATAAATTAAAC+GGG | - | chr2_4:28465132-28465151 | None:intergenic | 15.0% |
| !! | GCTATATAACATAAATTAAA+CGG | - | chr2_4:28465133-28465152 | None:intergenic | 15.0% |
| !!! | GATATATCATATTTTATCAT+AGG | - | chr2_4:28465382-28465401 | None:intergenic | 15.0% |
| !!! | ACAACTAATAATTTTTTTTG+TGG | - | chr2_4:28465458-28465477 | None:intergenic | 15.0% |
| !!! | ACAATATATTTTTCATATCA+TGG | - | chr2_4:28465585-28465604 | None:intergenic | 15.0% |
| !! | GTTTATATATACAAATTTAG+TGG | + | chr2_4:28465894-28465913 | Msa0323850:intron | 15.0% |
| !! | TCTTCAATAAAATAATAGAA+AGG | - | chr2_4:28466700-28466719 | None:intergenic | 15.0% |
| !! | AAGTTTCCGTAAAAAAAATA+TGG | + | chr2_4:28464064-28464083 | Msa0323850:CDS | 20.0% |
| !!! | ACAGTTTTTTTTTTTCACAT+TGG | + | chr2_4:28464149-28464168 | Msa0323850:intron | 20.0% |
| !! | AAATCAATTGATGTACATAT+GGG | - | chr2_4:28464880-28464899 | None:intergenic | 20.0% |
| !! | AAAATCAATTGATGTACATA+TGG | - | chr2_4:28464881-28464900 | None:intergenic | 20.0% |
| !!! | GAATAAAGAGTTTTTTCTTT+TGG | - | chr2_4:28464995-28465014 | None:intergenic | 20.0% |
| !! | AAGAAACAATACATATGTAT+GGG | - | chr2_4:28465183-28465202 | None:intergenic | 20.0% |
| !! | AAAGAAACAATACATATGTA+TGG | - | chr2_4:28465184-28465203 | None:intergenic | 20.0% |
| !!! | TATGTATTGTTTCTTTTGTT+TGG | + | chr2_4:28465188-28465207 | Msa0323850:intron | 20.0% |
| !!! | ATTCTAAAAAGGTTCTAAAT+AGG | - | chr2_4:28465339-28465358 | None:intergenic | 20.0% |
| !!! | TATTTAGAACCTTTTTAGAA+TGG | + | chr2_4:28465338-28465357 | Msa0323850:intron | 20.0% |
| !! | AATATATTGTTCACTTTCTT+TGG | + | chr2_4:28465595-28465614 | Msa0323850:intron | 20.0% |
| !! | ATATATTGTTCACTTTCTTT+GGG | + | chr2_4:28465596-28465615 | Msa0323850:intron | 20.0% |
| !! | TCATATAGAAAATAACAAAG+AGG | - | chr2_4:28465719-28465738 | None:intergenic | 20.0% |
| !! | AACTAATTATAATATACCTG+AGG | - | chr2_4:28466301-28466320 | None:intergenic | 20.0% |
| !! | CAGGTATATTATAATTAGTT+TGG | + | chr2_4:28466301-28466320 | Msa0323850:intron | 20.0% |
| !!! | TTTTGTTCCTATTTTTTTGT+TGG | + | chr2_4:28466388-28466407 | Msa0323850:intron | 20.0% |
| !!! | TTCCTTTTTTTTTCTTAGTT+TGG | + | chr2_4:28466512-28466531 | Msa0323850:intron | 20.0% |
| !! | TACCAAACTAAGAAAAAAAA+AGG | - | chr2_4:28466517-28466536 | None:intergenic | 20.0% |
| !! | GGAAAACATAATAAATCAAA+AGG | - | chr2_4:28466679-28466698 | None:intergenic | 20.0% |
| !! | TTTAATTCATCATCACAATT+TGG | - | chr2_4:28466759-28466778 | None:intergenic | 20.0% |
| !!! | TTTTGATAGATTACTTTAGA+AGG | + | chr2_4:28467325-28467344 | Msa0323850:CDS | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | + | chr2_4:28467438-28467457 | Msa0323850:intron | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | + | chr2_4:28467439-28467458 | Msa0323850:intron | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | + | chr2_4:28467440-28467459 | Msa0323850:intron | 20.0% |
| !! | AAAATAAGAAAGATGAAGAT+GGG | + | chr2_4:28467947-28467966 | Msa0323850:CDS | 20.0% |
| ! | TTTCCGTAAAAAAAATATGG+AGG | + | chr2_4:28464067-28464086 | Msa0323850:CDS | 25.0% |
| !!! | CTTCCTCCATATTTTTTTTA+CGG | - | chr2_4:28464073-28464092 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGAGGAACTAAA+AGG | - | chr2_4:28464178-28464197 | None:intergenic | 25.0% |
| !! | TTTAGTTCCTCTCAAAAAAT+TGG | + | chr2_4:28464178-28464197 | Msa0323850:intron | 25.0% |
| !!! | CCATCATGTTTTTTTTTTAG+AGG | - | chr2_4:28464217-28464236 | None:intergenic | 25.0% |
| !! | CCTCTAAAAAAAAAACATGA+TGG | + | chr2_4:28464214-28464233 | Msa0323850:intron | 25.0% |
| ! | ACTAAAAGGTTGCAAATAAA+AGG | - | chr2_4:28464369-28464388 | None:intergenic | 25.0% |
| ! | CAGTAAATATGTGAACTAAA+AGG | - | chr2_4:28464383-28464402 | None:intergenic | 25.0% |
| ! | ATATCTCTTCAACTATATGA+AGG | - | chr2_4:28464641-28464660 | None:intergenic | 25.0% |
| !!! | TTTGTTCTATGTTTTGTTTG+CGG | + | chr2_4:28464748-28464767 | Msa0323850:intron | 25.0% |
| ! | ATAGCATGAAAAAAGTCTAT+TGG | - | chr2_4:28464792-28464811 | None:intergenic | 25.0% |
| ! | AAAAGTGATGAACTTTGATA+GGG | - | chr2_4:28464958-28464977 | None:intergenic | 25.0% |
| ! | ATACATATGTATGGGAAAAA+TGG | - | chr2_4:28465175-28465194 | None:intergenic | 25.0% |
| ! | CAAAATAATACCTTCTACAT+GGG | + | chr2_4:28465243-28465262 | Msa0323850:intron | 25.0% |
| !!! | ATAGATGAGGGTTATTTTTA+GGG | - | chr2_4:28465665-28465684 | None:intergenic | 25.0% |
| !!! | AATAGATGAGGGTTATTTTT+AGG | - | chr2_4:28465666-28465685 | None:intergenic | 25.0% |
| ! | TAAAAATAACCCTCATCTAT+TGG | + | chr2_4:28465665-28465684 | Msa0323850:intron | 25.0% |
| !! | TTCATCATCTTTTAAATGAG+AGG | + | chr2_4:28465994-28466013 | Msa0323850:intron | 25.0% |
| !! | TCATCATCTTTTAAATGAGA+GGG | + | chr2_4:28465995-28466014 | Msa0323850:intron | 25.0% |
| !!! | ATTATAATTAGTTTGGCTTG+AGG | + | chr2_4:28466308-28466327 | Msa0323850:intron | 25.0% |
| ! | ACAAAAAACAACTATCTCTT+AGG | - | chr2_4:28466374-28466393 | None:intergenic | 25.0% |
| ! | AGTAGAACCAACAAAAAAAT+AGG | - | chr2_4:28466398-28466417 | None:intergenic | 25.0% |
| !! | TCATCGACTATAGATAAAAA+CGG | + | chr2_4:28466872-28466891 | Msa0323850:CDS | 25.0% |
| !!! | ATGCAAATGTTGTTTTCAAA+TGG | + | chr2_4:28467023-28467042 | Msa0323850:CDS | 25.0% |
| !!! | TGCAAATGTTGTTTTCAAAT+GGG | + | chr2_4:28467024-28467043 | Msa0323850:CDS | 25.0% |
| ! | ACTTATTAAAAGAACAGTGT+GGG | + | chr2_4:28467214-28467233 | Msa0323850:intron | 25.0% |
| ! | ATTCAAAGTCTTTAAATCTC+TGG | - | chr2_4:28467286-28467305 | None:intergenic | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | + | chr2_4:28467602-28467621 | Msa0323850:intron | 25.0% |
| ! | TGATCAGTTATTATAAGAGT+TGG | - | chr2_4:28467648-28467667 | None:intergenic | 25.0% |
| ! | GCATATCATGAAAAAATGTT+TGG | + | chr2_4:28467734-28467753 | Msa0323850:intron | 25.0% |
| ! | TTCTAAACCAAAACTATTGT+TGG | + | chr2_4:28467825-28467844 | Msa0323850:CDS | 25.0% |
| ! | GAAAATAAGAAAGATGAAGA+TGG | + | chr2_4:28467946-28467965 | Msa0323850:CDS | 25.0% |
| ! | TATGATAATAGTGAGATCAA+TGG | + | chr2_4:28467988-28468007 | Msa0323850:CDS | 25.0% |
| !!! | CTTCATACCAATTTTTTGAG+AGG | - | chr2_4:28464188-28464207 | None:intergenic | 30.0% |
| CTCTCAAAAAATTGGTATGA+AGG | + | chr2_4:28464186-28464205 | Msa0323850:intron | 30.0% | |
| ! | AAAACATGATGGAAGTTCAA+TGG | + | chr2_4:28464225-28464244 | Msa0323850:intron | 30.0% |
| !!! | TTCACTTGAATGCTTTTTTG+AGG | + | chr2_4:28464303-28464322 | Msa0323850:intron | 30.0% |
| !!! | TCACTTGAATGCTTTTTTGA+GGG | + | chr2_4:28464304-28464323 | Msa0323850:intron | 30.0% |
| !!! | TTTTTTGAGGGGATGAAAAA+TGG | + | chr2_4:28464316-28464335 | Msa0323850:intron | 30.0% |
| ACACTTGTATAGAATAAGAG+TGG | - | chr2_4:28464605-28464624 | None:intergenic | 30.0% | |
| ! | CTATATGAAGGTGTATACAT+TGG | - | chr2_4:28464629-28464648 | None:intergenic | 30.0% |
| GCAAAGATAAAATCACATGT+TGG | + | chr2_4:28464722-28464741 | Msa0323850:intron | 30.0% | |
| ! | TTTTCCTTCTTAAAGCTTTC+AGG | + | chr2_4:28464897-28464916 | Msa0323850:intron | 30.0% |
| GAAAAGTGATGAACTTTGAT+AGG | - | chr2_4:28464959-28464978 | None:intergenic | 30.0% | |
| ATTGGTACTTGTATTTGAGA+AGG | - | chr2_4:28465020-28465039 | None:intergenic | 30.0% | |
| AGCTACAATGTGATTTAGAT+TGG | - | chr2_4:28465038-28465057 | None:intergenic | 30.0% | |
| AAAATGGAATTGGCAAACAT+CGG | - | chr2_4:28465159-28465178 | None:intergenic | 30.0% | |
| ATGTATGGGAAAAATGGAAT+TGG | - | chr2_4:28465169-28465188 | None:intergenic | 30.0% | |
| !! | TTTCTTTTGTTTGGATTCGA+GGG | + | chr2_4:28465197-28465216 | Msa0323850:intron | 30.0% |
| !!! | CCATGTAGAAGGTATTATTT+TGG | - | chr2_4:28465245-28465264 | None:intergenic | 30.0% |
| CCAAAATAATACCTTCTACA+TGG | + | chr2_4:28465242-28465261 | Msa0323850:intron | 30.0% | |
| ! | CCTATCATTCCATTCTAAAA+AGG | - | chr2_4:28465350-28465369 | None:intergenic | 30.0% |
| !!! | CCTTTTTAGAATGGAATGAT+AGG | + | chr2_4:28465347-28465366 | Msa0323850:intron | 30.0% |
| TTCAAACTGATGTATTTGGT+TGG | - | chr2_4:28466202-28466221 | None:intergenic | 30.0% | |
| CCAATTCAAACTGATGTATT+TGG | - | chr2_4:28466206-28466225 | None:intergenic | 30.0% | |
| CCAAATACATCAGTTTGAAT+TGG | + | chr2_4:28466203-28466222 | Msa0323850:intron | 30.0% | |
| !! | AACTTGTTTTCAAATTCCTC+AGG | + | chr2_4:28466282-28466301 | Msa0323850:intron | 30.0% |
| GATGAATTAAAGCCTACAAT+TGG | + | chr2_4:28466768-28466787 | Msa0323850:intron | 30.0% | |
| ATCAATACTTGTCCAATTGT+AGG | - | chr2_4:28466783-28466802 | None:intergenic | 30.0% | |
| !! | TATTTTGTTTGCTCGAAAGA+GGG | + | chr2_4:28466911-28466930 | Msa0323850:CDS | 30.0% |
| TATTTGCCAAATAAGAAGGA+TGG | + | chr2_4:28466935-28466954 | Msa0323850:CDS | 30.0% | |
| TGTCAAGGTTAAAAGAAGAA+GGG | + | chr2_4:28466979-28466998 | Msa0323850:CDS | 30.0% | |
| !!! | AAATGTTGTTTTCAAATGGG+TGG | + | chr2_4:28467027-28467046 | Msa0323850:CDS | 30.0% |
| !!! | AATGTTGTTTTCAAATGGGT+GGG | + | chr2_4:28467028-28467047 | Msa0323850:CDS | 30.0% |
| TCATGTAGTAGAGCAAATAT+AGG | + | chr2_4:28467174-28467193 | Msa0323850:intron | 30.0% | |
| ! | CACACTGTTCTTTTAATAAG+TGG | - | chr2_4:28467215-28467234 | None:intergenic | 30.0% |
| CACTTATTAAAAGAACAGTG+TGG | + | chr2_4:28467213-28467232 | Msa0323850:intron | 30.0% | |
| CTTATTAAAAGAACAGTGTG+GGG | + | chr2_4:28467215-28467234 | Msa0323850:intron | 30.0% | |
| TTATTAAAAGAACAGTGTGG+GGG | + | chr2_4:28467216-28467235 | Msa0323850:intron | 30.0% | |
| TCATACGCATAATAAAAGGA+TGG | - | chr2_4:28467366-28467385 | None:intergenic | 30.0% | |
| ! | ATCCTTTTATTATGCGTATG+AGG | + | chr2_4:28467365-28467384 | Msa0323850:CDS | 30.0% |
| TACCTCATACGCATAATAAA+AGG | - | chr2_4:28467370-28467389 | None:intergenic | 30.0% | |
| ! | TTTTATTATGCGTATGAGGT+AGG | + | chr2_4:28467369-28467388 | Msa0323850:CDS | 30.0% |
| AGAAAAGTGATTCATTCGTA+TGG | + | chr2_4:28467583-28467602 | Msa0323850:intron | 30.0% | |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | + | chr2_4:28467611-28467630 | Msa0323850:intron | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | + | chr2_4:28467612-28467631 | Msa0323850:intron | 30.0% |
| !! | ATTTTCTATAGCCACTTTCA+TGG | - | chr2_4:28467679-28467698 | None:intergenic | 30.0% |
| GAAGTTCATTGACATGCAAT+TGG | + | chr2_4:28464089-28464108 | Msa0323850:CDS | 35.0% | |
| !!! | CACTTGAATGCTTTTTTGAG+GGG | + | chr2_4:28464305-28464324 | Msa0323850:intron | 35.0% |
| GATACTGCAACAACTAAAGA+AGG | - | chr2_4:28464474-28464493 | None:intergenic | 35.0% | |
| !! | TATGGTTAGCTCTATGTTAC+AGG | + | chr2_4:28464534-28464553 | Msa0323850:CDS | 35.0% |
| !! | TTAGCTCTATGTTACAGGTA+AGG | + | chr2_4:28464539-28464558 | Msa0323850:intron | 35.0% |
| !! | TCAACCTGAAAGCTTTAAGA+AGG | - | chr2_4:28464904-28464923 | None:intergenic | 35.0% |
| ! | TTCTTTTGGCAAAAACTTGC+AGG | - | chr2_4:28464981-28465000 | None:intergenic | 35.0% |
| !! | GTTTCTTTTGTTTGGATTCG+AGG | + | chr2_4:28465196-28465215 | Msa0323850:intron | 35.0% |
| TTGTTCACTTTCTTTGGGTA+AGG | + | chr2_4:28465601-28465620 | Msa0323850:intron | 35.0% | |
| TTCTTTGGGTAAGGAAGATT+TGG | + | chr2_4:28465610-28465629 | Msa0323850:intron | 35.0% | |
| AAGGAAGATTTGGAGGATAA+TGG | + | chr2_4:28465620-28465639 | Msa0323850:intron | 35.0% | |
| GAGGATTAAATAGTGGTCAT+TGG | + | chr2_4:28466021-28466040 | Msa0323850:intron | 35.0% | |
| ! | TGGTCATTGGATTAGATACA+TGG | + | chr2_4:28466034-28466053 | Msa0323850:intron | 35.0% |
| AAACTGATGTATTTGGTTGG+AGG | - | chr2_4:28466199-28466218 | None:intergenic | 35.0% | |
| ! | AGTTGATGTATCTTTGTCCA+TGG | - | chr2_4:28466266-28466285 | None:intergenic | 35.0% |
| AACCACCTAAGATTAATGCA+GGG | - | chr2_4:28466573-28466592 | None:intergenic | 35.0% | |
| AAACCACCTAAGATTAATGC+AGG | - | chr2_4:28466574-28466593 | None:intergenic | 35.0% | |
| !! | AGTATTGATACGTTAGCAGA+AGG | + | chr2_4:28466794-28466813 | Msa0323850:intron | 35.0% |
| !! | GTATTTTGTTTGCTCGAAAG+AGG | + | chr2_4:28466910-28466929 | Msa0323850:CDS | 35.0% |
| GGGTTATTTGCCAAATAAGA+AGG | + | chr2_4:28466931-28466950 | Msa0323850:CDS | 35.0% | |
| TCCATACCATCCTTCTTATT+TGG | - | chr2_4:28466944-28466963 | None:intergenic | 35.0% | |
| CTGTCAAGGTTAAAAGAAGA+AGG | + | chr2_4:28466978-28466997 | Msa0323850:CDS | 35.0% | |
| !!! | ATGTTGTTTTCAAATGGGTG+GGG | + | chr2_4:28467029-28467048 | Msa0323850:CDS | 35.0% |
| ! | TTATTCCTTATTTGGGGATG+TGG | + | chr2_4:28467446-28467465 | Msa0323850:intron | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+CGG | + | chr2_4:28467507-28467526 | Msa0323850:intron | 35.0% |
| AGGTAATAGATTGTCGATGA+TGG | - | chr2_4:28467539-28467558 | None:intergenic | 35.0% | |
| CATCGACAATCTATTACCTT+CGG | + | chr2_4:28467540-28467559 | Msa0323850:intron | 35.0% | |
| ! | AATAGAAGCGCAACAACATA+AGG | + | chr2_4:28467774-28467793 | Msa0323850:CDS | 35.0% |
| TAAGAAAGATGAAGATGGGA+TGG | + | chr2_4:28467951-28467970 | Msa0323850:CDS | 35.0% | |
| TTGCTCATGCAAAATGTTTC+AGG | + | chr2_4:28468056-28468075 | Msa0323850:CDS | 35.0% | |
| CTAAAGAAGGTAGGCTACAT+AGG | - | chr2_4:28464461-28464480 | None:intergenic | 40.0% | |
| CTGCAACAACTAAAGAAGGT+AGG | - | chr2_4:28464470-28464489 | None:intergenic | 40.0% | |
| TAACCATACGAAGGTCTTCA+TGG | - | chr2_4:28464522-28464541 | None:intergenic | 40.0% | |
| ACATAGAGCTAACCATACGA+AGG | - | chr2_4:28464531-28464550 | None:intergenic | 40.0% | |
| GGTTGAATCAGAAGACAGAA+AGG | + | chr2_4:28464918-28464937 | Msa0323850:intron | 40.0% | |
| TGAATCAGAAGACAGAAAGG+TGG | + | chr2_4:28464921-28464940 | Msa0323850:CDS | 40.0% | |
| !! | TTTTGTTTGGATTCGAGGGA+TGG | + | chr2_4:28465201-28465220 | Msa0323850:intron | 40.0% |
| TGACATTAGACCCATGTAGA+AGG | - | chr2_4:28465256-28465275 | None:intergenic | 40.0% | |
| TTTGGGTAAGGAAGATTTGG+AGG | + | chr2_4:28465613-28465632 | Msa0323850:intron | 40.0% | |
| !! | GATTTGGAGGATAATGGAGT+AGG | + | chr2_4:28465626-28465645 | Msa0323850:intron | 40.0% |
| CCTAGTCATCCAATAGATGA+GGG | - | chr2_4:28465677-28465696 | None:intergenic | 40.0% | |
| TCCTAGTCATCCAATAGATG+AGG | - | chr2_4:28465678-28465697 | None:intergenic | 40.0% | |
| ! | CTTTTAAATGAGAGGGTGAG+AGG | + | chr2_4:28466002-28466021 | Msa0323850:intron | 40.0% |
| AGGGTGAGAGGATTAAATAG+TGG | + | chr2_4:28466014-28466033 | Msa0323850:intron | 40.0% | |
| GGTCAGTAATGAGAAGAACA+TGG | - | chr2_4:28466154-28466173 | None:intergenic | 40.0% | |
| GTTACGTTCATCATTCTCCA+TGG | + | chr2_4:28466246-28466265 | Msa0323850:intron | 40.0% | |
| CAACAACCAAATAGAACCAC+GGG | - | chr2_4:28466426-28466445 | None:intergenic | 40.0% | |
| CCAACAACCAAATAGAACCA+CGG | - | chr2_4:28466427-28466446 | None:intergenic | 40.0% | |
| AGAAGCCCTGCATTAATCTT+AGG | + | chr2_4:28466565-28466584 | Msa0323850:intron | 40.0% | |
| TAACAGCAGCACAAGAAATG+TGG | - | chr2_4:28466627-28466646 | None:intergenic | 40.0% | |
| GAAAAATACGCACTCTCTGT+CGG | + | chr2_4:28466830-28466849 | Msa0323850:intron | 40.0% | |
| GCCAAATAAGAAGGATGGTA+TGG | + | chr2_4:28466940-28466959 | Msa0323850:CDS | 40.0% | |
| GCAAAGTGAATCTACTGTCA+AGG | + | chr2_4:28466964-28466983 | Msa0323850:CDS | 40.0% | |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | + | chr2_4:28466995-28467014 | Msa0323850:CDS | 40.0% |
| !!! | TGTTGTTTTCAAATGGGTGG+GGG | + | chr2_4:28467030-28467049 | Msa0323850:CDS | 40.0% |
| TGTGGGGGTTATGAAAATGT+TGG | + | chr2_4:28467231-28467250 | Msa0323850:CDS | 40.0% | |
| CCCAAAAAACATGCTTCAGT+CGG | - | chr2_4:28467404-28467423 | None:intergenic | 40.0% | |
| !!! | CCGACTGAAGCATGTTTTTT+GGG | + | chr2_4:28467401-28467420 | Msa0323850:CDS | 40.0% |
| !!! | AAGCATGTTTTTTGGGCAGA+TGG | + | chr2_4:28467408-28467427 | Msa0323850:CDS | 40.0% |
| TTTGGGCAGATGGTATTTGT+AGG | + | chr2_4:28467418-28467437 | Msa0323850:intron | 40.0% | |
| TGAAACCACATCCCCAAATA+AGG | - | chr2_4:28467454-28467473 | None:intergenic | 40.0% | |
| ! | TGATTTTTGCACCTTTCACC+GGG | + | chr2_4:28467508-28467527 | Msa0323850:intron | 40.0% |
| ! | TTGTCGATGATGGTTTATCC+CGG | - | chr2_4:28467529-28467548 | None:intergenic | 40.0% |
| !! | AAGTTTTTGGAAGCAATGGG+CGG | + | chr2_4:28467615-28467634 | Msa0323850:intron | 40.0% |
| TCAAGATCCTTCCATGAAAG+TGG | + | chr2_4:28467665-28467684 | Msa0323850:intron | 40.0% | |
| ! | TCTATAGCCACTTTCATGGA+AGG | - | chr2_4:28467675-28467694 | None:intergenic | 40.0% |
| CTACTCATAGATTGTGCATG+TGG | + | chr2_4:28467712-28467731 | Msa0323850:intron | 40.0% | |
| ! | CGACGTTCCAACAATAGTTT+TGG | - | chr2_4:28467835-28467854 | None:intergenic | 40.0% |
| ! | TGAATTATCGATTGCATGCG+TGG | + | chr2_4:28467912-28467931 | Msa0323850:CDS | 40.0% |
| TGCAAAATGTTTCAGGCTGA+AGG | + | chr2_4:28468063-28468082 | Msa0323850:CDS | 40.0% | |
| TCTTCATGGTCGCTTATCTC+TGG | - | chr2_4:28464508-28464527 | None:intergenic | 45.0% | |
| TGGAATTGGCAAACATCGGT+TGG | - | chr2_4:28465155-28465174 | None:intergenic | 45.0% | |
| CCCTCATCTATTGGATGACT+AGG | + | chr2_4:28465674-28465693 | Msa0323850:intron | 45.0% | |
| ! | CCGTGGTTCTATTTGGTTGT+TGG | + | chr2_4:28466424-28466443 | Msa0323850:intron | 45.0% |
| AGCCCTGCATTAATCTTAGG+TGG | + | chr2_4:28466568-28466587 | Msa0323850:intron | 45.0% | |
| ATAAAAACGGCGTGAAGCGT+TGG | + | chr2_4:28466885-28466904 | Msa0323850:CDS | 45.0% | |
| CTCTTCATAGGTGAAGCAAG+TGG | - | chr2_4:28467100-28467119 | None:intergenic | 45.0% | |
| CTGAGAAACGGTCTCTTCAT+AGG | - | chr2_4:28467112-28467131 | None:intergenic | 45.0% | |
| CTATGAAGAGACCGTTTCTC+AGG | + | chr2_4:28467110-28467129 | Msa0323850:CDS | 45.0% | |
| TTCCTTGCAGACCTGAGAAA+CGG | - | chr2_4:28467124-28467143 | None:intergenic | 45.0% | |
| !!! | GCCGACTGAAGCATGTTTTT+TGG | + | chr2_4:28467400-28467419 | Msa0323850:CDS | 45.0% |
| TGATGGTTTATCCCGGTGAA+AGG | - | chr2_4:28467522-28467541 | None:intergenic | 45.0% | |
| CAATCTATTACCTTCGGCGT+AGG | + | chr2_4:28467546-28467565 | Msa0323850:intron | 45.0% | |
| TGTTATAAGTCCTACGCCGA+AGG | - | chr2_4:28467559-28467578 | None:intergenic | 45.0% | |
| !!! | ATATTTATTTTGTTAATTTT+TGG | + | chr2_4:28466719-28466738 | Msa0323850:intron | 5.0% |
| CGACCATGAAGACCTTCGTA+TGG | + | chr2_4:28464516-28464535 | Msa0323850:CDS | 50.0% | |
| GCAACGCGCGTATCAGAAAT+TGG | - | chr2_4:28466106-28466125 | None:intergenic | 50.0% | |
| GAAGTGAGAGGGAAGTGAGA+AGG | - | chr2_4:28466175-28466194 | None:intergenic | 50.0% | |
| TGGTTGGAGGTGAAGTGAGA+GGG | - | chr2_4:28466186-28466205 | None:intergenic | 50.0% | |
| TTGGTTGGAGGTGAAGTGAG+AGG | - | chr2_4:28466187-28466206 | None:intergenic | 50.0% | |
| ! | TGCTGTCCCGTGGTTCTATT+TGG | + | chr2_4:28466417-28466436 | Msa0323850:intron | 50.0% |
| ! | GTTTTCAAATGGGTGGGGGA+AGG | + | chr2_4:28467034-28467053 | Msa0323850:CDS | 50.0% |
| GCGTATGAGGTAGGTGAAGA+AGG | + | chr2_4:28467378-28467397 | Msa0323850:CDS | 50.0% | |
| TGTTGGAACGTCGTATCGAG+AGG | + | chr2_4:28467842-28467861 | Msa0323850:CDS | 50.0% | |
| ! | TCGATTGCATGCGTGGATTG+TGG | + | chr2_4:28467919-28467938 | Msa0323850:CDS | 50.0% |
| !! | TTGGTTCTACTGCTGTCCCG+TGG | + | chr2_4:28466407-28466426 | Msa0323850:intron | 55.0% |
| GACCGTTTCTCAGGTCTGCA+AGG | + | chr2_4:28467119-28467138 | Msa0323850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 28464057 | 28468101 | 28464057 | ID=Msa0323850;Name=Msa0323850 |
| chr2_4 | mRNA | 28464057 | 28468101 | 28464057 | ID=Msa0323850-mRNA-1;Parent=Msa0323850;Name=Msa0323850-mRNA-1;_AED=0.26;_eAED=0.32;_QI=0|0|0|0.5|1|1|6|0|348 |
| chr2_4 | exon | 28464057 | 28464110 | 28464057 | ID=Msa0323850-mRNA-1:exon:9766;Parent=Msa0323850-mRNA-1 |
| chr2_4 | exon | 28464490 | 28464555 | 28464490 | ID=Msa0323850-mRNA-1:exon:9767;Parent=Msa0323850-mRNA-1 |
| chr2_4 | exon | 28464919 | 28465031 | 28464919 | ID=Msa0323850-mRNA-1:exon:9768;Parent=Msa0323850-mRNA-1 |
| chr2_4 | exon | 28466859 | 28467144 | 28466859 | ID=Msa0323850-mRNA-1:exon:9769;Parent=Msa0323850-mRNA-1 |
| chr2_4 | exon | 28467231 | 28467429 | 28467231 | ID=Msa0323850-mRNA-1:exon:9770;Parent=Msa0323850-mRNA-1 |
| chr2_4 | exon | 28467773 | 28468101 | 28467773 | ID=Msa0323850-mRNA-1:exon:9771;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28464057 | 28464110 | 28464057 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28464490 | 28464555 | 28464490 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28464919 | 28465031 | 28464919 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28466859 | 28467144 | 28466859 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28467231 | 28467429 | 28467231 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| chr2_4 | CDS | 28467773 | 28468101 | 28467773 | ID=Msa0323850-mRNA-1:cds;Parent=Msa0323850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
