Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323900 | XP_039683737.1 | 79.346 | 489 | 57 | 3 | 1 | 446 | 1 | 488 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323900 | sp|Q9SZL8|FRS5_ARATH | 29.032 | 434 | 275 | 8 | 32 | 445 | 70 | 490 | 6.07e-51 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0323900 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323900 | MtrunA17_Chr2g0324011 | 33.023 | 430 | 262 | 7 | 32 | 446 | 7 | 425 | 1.90e-77 | 252 |
| Msa0323900 | MtrunA17_Chr3g0082121 | 34.450 | 418 | 247 | 8 | 41 | 446 | 49 | 451 | 1.37e-72 | 241 |
| Msa0323900 | MtrunA17_Chr1g0164591 | 34.891 | 321 | 193 | 5 | 104 | 422 | 1 | 307 | 8.16e-62 | 203 |
| Msa0323900 | MtrunA17_Chr1g0202341 | 32.458 | 419 | 261 | 7 | 34 | 439 | 50 | 459 | 1.35e-61 | 212 |
| Msa0323900 | MtrunA17_Chr8g0363841 | 31.296 | 409 | 259 | 8 | 40 | 435 | 22 | 421 | 6.52e-58 | 202 |
| Msa0323900 | MtrunA17_Chr2g0296781 | 32.048 | 415 | 265 | 9 | 39 | 445 | 1 | 406 | 9.51e-56 | 196 |
| Msa0323900 | MtrunA17_Chr6g0477261 | 34.694 | 294 | 186 | 4 | 153 | 445 | 7 | 295 | 4.99e-51 | 182 |
| Msa0323900 | MtrunA17_Chr5g0448761 | 29.025 | 441 | 270 | 11 | 32 | 445 | 57 | 481 | 8.43e-50 | 181 |
| Msa0323900 | MtrunA17_Chr7g0258861 | 34.375 | 288 | 168 | 5 | 38 | 310 | 13 | 294 | 1.26e-49 | 171 |
| Msa0323900 | MtrunA17_Chr1g0203721 | 29.274 | 427 | 269 | 10 | 40 | 446 | 68 | 481 | 8.10e-49 | 178 |
| Msa0323900 | MtrunA17_Chr2g0287651 | 28.362 | 409 | 271 | 8 | 39 | 435 | 79 | 477 | 3.29e-47 | 174 |
| Msa0323900 | MtrunA17_Chr6g0458391 | 28.878 | 419 | 259 | 9 | 41 | 446 | 231 | 623 | 3.61e-47 | 173 |
| Msa0323900 | MtrunA17_Chr5g0441581 | 28.842 | 423 | 261 | 10 | 39 | 445 | 36 | 434 | 2.85e-45 | 167 |
| Msa0323900 | MtrunA17_Chr1g0196541 | 27.644 | 416 | 282 | 10 | 39 | 445 | 1 | 406 | 1.07e-42 | 160 |
| Msa0323900 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 161 | 233 | 1 | 73 | 1.19e-40 | 139 |
| Msa0323900 | MtrunA17_Chr2g0329031 | 27.626 | 438 | 282 | 10 | 23 | 445 | 2 | 419 | 2.64e-40 | 153 |
| Msa0323900 | MtrunA17_Chr1g0198761 | 29.587 | 436 | 264 | 15 | 40 | 446 | 52 | 473 | 3.43e-40 | 153 |
| Msa0323900 | MtrunA17_Chr5g0431001 | 29.330 | 433 | 263 | 12 | 40 | 443 | 66 | 484 | 8.41e-40 | 149 |
| Msa0323900 | MtrunA17_Chr2g0291591 | 26.164 | 451 | 291 | 12 | 16 | 445 | 44 | 473 | 1.56e-39 | 149 |
| Msa0323900 | MtrunA17_Chr1g0203051 | 26.377 | 345 | 244 | 4 | 89 | 433 | 143 | 477 | 6.78e-39 | 148 |
| Msa0323900 | MtrunA17_Chr2g0276841 | 28.606 | 416 | 257 | 13 | 49 | 439 | 84 | 484 | 5.29e-38 | 146 |
| Msa0323900 | MtrunA17_Chr5g0440451 | 27.358 | 424 | 269 | 13 | 39 | 439 | 47 | 454 | 6.28e-37 | 144 |
| Msa0323900 | MtrunA17_Chr2g0287061 | 27.340 | 406 | 258 | 12 | 41 | 446 | 189 | 557 | 1.38e-36 | 142 |
| Msa0323900 | MtrunA17_Chr2g0290391 | 28.103 | 427 | 265 | 15 | 39 | 435 | 55 | 469 | 1.85e-35 | 139 |
| Msa0323900 | MtrunA17_Chr1g0207551 | 26.353 | 425 | 285 | 9 | 31 | 440 | 30 | 441 | 4.23e-35 | 138 |
| Msa0323900 | MtrunA17_Chr2g0291581 | 26.682 | 431 | 284 | 10 | 16 | 434 | 49 | 459 | 2.72e-34 | 135 |
| Msa0323900 | MtrunA17_Chr5g0448511 | 29.730 | 259 | 174 | 4 | 189 | 445 | 1 | 253 | 4.57e-33 | 131 |
| Msa0323900 | MtrunA17_Chr2g0294841 | 27.991 | 443 | 260 | 16 | 41 | 445 | 51 | 472 | 9.79e-32 | 128 |
| Msa0323900 | MtrunA17_Chr3g0118611 | 31.489 | 235 | 154 | 3 | 194 | 426 | 111 | 340 | 2.12e-31 | 127 |
| Msa0323900 | MtrunA17_Chr3g0080351 | 25.346 | 434 | 254 | 11 | 34 | 435 | 75 | 470 | 6.01e-31 | 126 |
| Msa0323900 | MtrunA17_Chr1g0172971 | 60.684 | 117 | 18 | 2 | 1 | 89 | 1 | 117 | 7.44e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323900 | AT4G38180.1 | 29.032 | 434 | 275 | 8 | 32 | 445 | 70 | 490 | 6.17e-52 | 187 |
| Msa0323900 | AT3G06250.2 | 27.506 | 389 | 245 | 8 | 34 | 422 | 189 | 540 | 1.37e-38 | 149 |
| Msa0323900 | AT3G06250.1 | 27.506 | 389 | 245 | 8 | 34 | 422 | 189 | 540 | 1.37e-38 | 149 |
| Msa0323900 | AT3G06250.3 | 27.506 | 389 | 245 | 8 | 34 | 422 | 189 | 540 | 1.37e-38 | 149 |
| Msa0323900 | AT2G27110.2 | 27.166 | 427 | 276 | 9 | 4 | 426 | 23 | 418 | 3.11e-37 | 145 |
| Msa0323900 | AT2G27110.1 | 27.166 | 427 | 276 | 9 | 4 | 426 | 23 | 418 | 3.11e-37 | 145 |
| Msa0323900 | AT4G15090.1 | 26.526 | 426 | 294 | 8 | 32 | 445 | 48 | 466 | 1.38e-36 | 143 |
| Msa0323900 | AT4G15090.5 | 26.526 | 426 | 294 | 8 | 32 | 445 | 48 | 466 | 1.38e-36 | 143 |
| Msa0323900 | AT4G15090.3 | 26.526 | 426 | 294 | 8 | 32 | 445 | 48 | 466 | 1.38e-36 | 143 |
| Msa0323900 | AT4G15090.2 | 26.526 | 426 | 294 | 8 | 32 | 445 | 48 | 466 | 1.38e-36 | 143 |
| Msa0323900 | AT4G15090.4 | 26.526 | 426 | 294 | 8 | 32 | 445 | 48 | 466 | 1.38e-36 | 143 |
| Msa0323900 | AT2G27110.3 | 32.099 | 243 | 158 | 3 | 186 | 426 | 36 | 273 | 6.74e-35 | 138 |
| Msa0323900 | AT4G38170.1 | 31.915 | 235 | 148 | 5 | 208 | 439 | 24 | 249 | 1.06e-33 | 133 |
| Msa0323900 | AT1G76320.3 | 28.612 | 353 | 234 | 9 | 97 | 445 | 65 | 403 | 1.52e-33 | 134 |
| Msa0323900 | AT1G76320.2 | 28.612 | 353 | 234 | 9 | 97 | 445 | 65 | 403 | 2.86e-33 | 133 |
| Msa0323900 | AT1G76320.1 | 28.612 | 353 | 234 | 9 | 97 | 445 | 65 | 403 | 2.96e-33 | 133 |
| Msa0323900 | AT1G76320.4 | 28.612 | 353 | 234 | 9 | 97 | 445 | 65 | 403 | 2.96e-33 | 133 |
| Msa0323900 | AT5G18960.2 | 26.034 | 411 | 264 | 11 | 24 | 431 | 200 | 573 | 3.31e-33 | 133 |
| Msa0323900 | AT5G18960.1 | 26.034 | 411 | 264 | 11 | 24 | 431 | 200 | 573 | 3.31e-33 | 133 |
| Msa0323900 | AT1G10240.2 | 27.924 | 419 | 256 | 16 | 49 | 439 | 62 | 462 | 3.54e-33 | 132 |
| Msa0323900 | AT1G10240.1 | 27.924 | 419 | 256 | 16 | 49 | 439 | 62 | 462 | 3.54e-33 | 132 |
| Msa0323900 | AT5G28530.1 | 26.402 | 428 | 269 | 13 | 40 | 435 | 60 | 473 | 1.04e-31 | 128 |
| Msa0323900 | AT5G28530.3 | 26.402 | 428 | 269 | 13 | 40 | 435 | 60 | 473 | 1.05e-31 | 128 |
| Msa0323900 | AT5G28530.2 | 26.402 | 428 | 269 | 13 | 40 | 435 | 60 | 473 | 1.05e-31 | 128 |
| Msa0323900 | AT3G22170.2 | 25.466 | 322 | 230 | 6 | 126 | 445 | 162 | 475 | 2.13e-29 | 122 |
| Msa0323900 | AT3G22170.1 | 25.466 | 322 | 230 | 6 | 126 | 445 | 162 | 475 | 2.13e-29 | 122 |
| Msa0323900 | AT1G80010.1 | 26.128 | 421 | 286 | 14 | 41 | 445 | 101 | 512 | 4.96e-29 | 120 |
| Msa0323900 | AT4G19990.1 | 29.482 | 251 | 171 | 3 | 192 | 440 | 106 | 352 | 3.15e-27 | 115 |
| Msa0323900 | AT4G19990.7 | 29.482 | 251 | 171 | 3 | 192 | 440 | 177 | 423 | 3.47e-27 | 115 |
| Msa0323900 | AT4G19990.5 | 29.482 | 251 | 171 | 3 | 192 | 440 | 163 | 409 | 3.81e-27 | 115 |
| Msa0323900 | AT4G19990.3 | 29.482 | 251 | 171 | 3 | 192 | 440 | 163 | 409 | 4.26e-27 | 115 |
| Msa0323900 | AT4G19990.4 | 29.482 | 251 | 171 | 3 | 192 | 440 | 163 | 409 | 4.26e-27 | 115 |
| Msa0323900 | AT4G19990.6 | 29.482 | 251 | 171 | 3 | 192 | 440 | 163 | 409 | 4.45e-27 | 115 |
| Msa0323900 | AT4G19990.2 | 29.482 | 251 | 171 | 3 | 192 | 440 | 163 | 409 | 4.45e-27 | 115 |
| Msa0323900 | AT2G32250.5 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.82e-26 | 113 |
| Msa0323900 | AT2G32250.2 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.83e-26 | 113 |
| Msa0323900 | AT2G32250.4 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.83e-26 | 113 |
| Msa0323900 | AT2G32250.6 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.90e-26 | 113 |
| Msa0323900 | AT2G32250.1 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.90e-26 | 113 |
| Msa0323900 | AT2G32250.3 | 24.661 | 442 | 269 | 13 | 1 | 431 | 8 | 396 | 1.90e-26 | 113 |
| Msa0323900 | AT2G32250.7 | 25.191 | 393 | 234 | 12 | 50 | 431 | 12 | 355 | 4.89e-25 | 108 |
| Msa0323900 | AT2G32250.8 | 24.936 | 393 | 235 | 11 | 50 | 431 | 12 | 355 | 4.97e-25 | 108 |
| Msa0323900 | AT1G52520.1 | 23.573 | 403 | 283 | 9 | 41 | 435 | 91 | 476 | 1.86e-23 | 103 |
Find 119 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 2_4:+28633787 | Msa0323900:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 2_4:-28634922 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2_4:+28634054 | Msa0323900:three_prime_UTR |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 2_4:+28633503 | Msa0323900:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 2_4:+28632985 | Msa0323900:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 2_4:-28633633 | None:intergenic |
| CGTAAGAGTAGTGTGTTATT+TGG | 0.290622 | 2_4:+28633539 | Msa0323900:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 2_4:-28634916 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 2_4:+28634351 | Msa0323900:three_prime_UTR |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 2_4:+28633828 | Msa0323900:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 2_4:+28634768 | Msa0323900:three_prime_UTR |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 2_4:-28633651 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 2_4:-28633035 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 2_4:+28635165 | Msa0323900:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 2_4:-28634984 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 2_4:+28634087 | Msa0323900:three_prime_UTR |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 2_4:-28634644 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 2_4:+28633928 | Msa0323900:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 2_4:+28635146 | Msa0323900:three_prime_UTR |
| GAGCAGTTTCTTATTTCTAA+AGG | 0.381584 | 2_4:+28634793 | Msa0323900:three_prime_UTR |
| GCTTTAATAAATTCTAAAGT+TGG | 0.382119 | 2_4:+28632712 | Msa0323900:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 2_4:+28634760 | Msa0323900:three_prime_UTR |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 2_4:+28633042 | Msa0323900:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 2_4:+28634096 | Msa0323900:three_prime_UTR |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 2_4:+28633034 | Msa0323900:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 2_4:+28633927 | Msa0323900:CDS |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 2_4:+28634908 | Msa0323900:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 2_4:-28634898 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2_4:+28634228 | Msa0323900:three_prime_UTR |
| TAAAGAATCAAGGAAGTCTT+TGG | 0.404119 | 2_4:+28632276 | Msa0323900:CDS |
| CCTTGATTCTTTATCACTAA+AGG | 0.406174 | 2_4:-28632266 | None:intergenic |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 2_4:+28634476 | Msa0323900:three_prime_UTR |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 2_4:-28634399 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 2_4:+28632347 | Msa0323900:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 2_4:+28634434 | Msa0323900:three_prime_UTR |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 2_4:-28634400 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 2_4:+28632682 | Msa0323900:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 2_4:+28632564 | Msa0323900:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 2_4:+28632596 | Msa0323900:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 2_4:-28633644 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2_4:+28632547 | Msa0323900:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 2_4:-28634577 | None:intergenic |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 2_4:+28632201 | Msa0323900:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 2_4:+28633718 | Msa0323900:CDS |
| GTGATGGGTCAAGGAGTTAG+AGG | 0.455663 | 2_4:+28632760 | Msa0323900:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 2_4:-28632652 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 2_4:+28634477 | Msa0323900:three_prime_UTR |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 2_4:+28633882 | Msa0323900:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2_4:-28634230 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 2_4:-28632541 | None:intergenic |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 2_4:+28634869 | Msa0323900:three_prime_UTR |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 2_4:+28632825 | Msa0323900:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 2_4:+28634244 | Msa0323900:three_prime_UTR |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 2_4:-28633516 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 2_4:+28633829 | Msa0323900:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 2_4:+28632838 | Msa0323900:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2_4:+28634068 | Msa0323900:three_prime_UTR |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 2_4:-28634148 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 2_4:+28632744 | Msa0323900:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 2_4:-28632930 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 2_4:+28634868 | Msa0323900:three_prime_UTR |
| TTTAACTATGCATATAACAC+TGG | 0.507184 | 2_4:+28632334 | Msa0323900:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 2_4:+28633915 | Msa0323900:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 2_4:+28634413 | Msa0323900:three_prime_UTR |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 2_4:-28632796 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 2_4:+28633933 | Msa0323900:CDS |
| AATCAAACAAGTGAATGGTC+TGG | 0.518433 | 2_4:-28634031 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 2_4:-28634393 | None:intergenic |
| GCGTCCGTCTGTCGATAAGC+TGG | 0.519624 | 2_4:+28634615 | Msa0323900:three_prime_UTR |
| TAAAGAATCAAACAAGTGAA+TGG | 0.521506 | 2_4:-28634036 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 2_4:+28632600 | Msa0323900:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 2_4:+28634414 | Msa0323900:three_prime_UTR |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2_4:-28634225 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 2_4:+28634974 | Msa0323900:three_prime_UTR |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 2_4:+28632441 | Msa0323900:intron |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 2_4:+28634245 | Msa0323900:three_prime_UTR |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 2_4:+28632442 | Msa0323900:intron |
| AATGAAGCTCTCACGAAACC+AGG | 0.545870 | 2_4:+28632892 | Msa0323900:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 2_4:-28632640 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 2_4:-28633664 | None:intergenic |
| CTGGAATCTACCATGAATGT+TGG | 0.565113 | 2_4:+28634634 | Msa0323900:three_prime_UTR |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 2_4:+28632225 | Msa0323900:CDS |
| CCTTTAGTGATAAAGAATCA+AGG | 0.571665 | 2_4:+28632266 | Msa0323900:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 2_4:+28634720 | Msa0323900:three_prime_UTR |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 2_4:-28634149 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 2_4:-28634880 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 2_4:+28634999 | Msa0323900:three_prime_UTR |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 2_4:-28634170 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 2_4:+28632751 | Msa0323900:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 2_4:+28634761 | Msa0323900:three_prime_UTR |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 2_4:+28633650 | Msa0323900:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 2_4:+28634756 | Msa0323900:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 2_4:-28634836 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 2_4:+28632831 | Msa0323900:CDS |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 2_4:+28634383 | Msa0323900:three_prime_UTR |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 2_4:+28635018 | Msa0323900:three_prime_UTR |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 2_4:-28634668 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 2_4:+28632745 | Msa0323900:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 2_4:+28632834 | Msa0323900:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 2_4:+28634723 | Msa0323900:three_prime_UTR |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 2_4:+28634146 | Msa0323900:three_prime_UTR |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 2_4:+28634231 | Msa0323900:three_prime_UTR |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 2_4:+28634329 | Msa0323900:three_prime_UTR |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 2_4:+28632190 | Msa0323900:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 2_4:-28633884 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 2_4:+28634330 | Msa0323900:three_prime_UTR |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 2_4:+28635017 | Msa0323900:three_prime_UTR |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 2_4:-28634398 | None:intergenic |
| AGAACTAGACTGTCACATGT+TGG | 0.634703 | 2_4:-28632490 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 2_4:+28633719 | Msa0323900:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2_4:+28634069 | Msa0323900:three_prime_UTR |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 2_4:+28632599 | Msa0323900:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 2_4:-28634190 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 2_4:+28634745 | Msa0323900:three_prime_UTR |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 2_4:-28634495 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 2_4:+28633646 | Msa0323900:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 2_4:+28634478 | Msa0323900:three_prime_UTR |
| GATTCCAGCTTATCGACAGA+CGG | 0.677785 | 2_4:-28634619 | None:intergenic |
| GGGTCAAGGAGTTAGAGGCA+CGG | 0.692167 | 2_4:+28632765 | Msa0323900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr2_4:28635048-28635067 | Msa0323900:three_prime_UTR | 15.0% |
| !! | CAATTCACAAAATTAGAAAT+CGG | + | chr2_4:28632390-28632409 | Msa0323900:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr2_4:28632596-28632615 | Msa0323900:CDS | 20.0% |
| !!! | GCTTTAATAAATTCTAAAGT+TGG | + | chr2_4:28632712-28632731 | Msa0323900:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr2_4:28633189-28633208 | Msa0323900:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr2_4:28633217-28633236 | Msa0323900:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr2_4:28633857-28633876 | Msa0323900:CDS | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr2_4:28635146-28635165 | Msa0323900:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr2_4:28632225-28632244 | Msa0323900:CDS | 25.0% |
| ! | TTTAACTATGCATATAACAC+TGG | + | chr2_4:28632334-28632353 | Msa0323900:CDS | 25.0% |
| !! | CTAATTTTGTGAATTGTTCT+TGG | - | chr2_4:28632386-28632405 | None:intergenic | 25.0% |
| ! | ACAAAATTAGAAATCGGATA+AGG | + | chr2_4:28632396-28632415 | Msa0323900:intron | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr2_4:28632599-28632618 | Msa0323900:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr2_4:28632600-28632619 | Msa0323900:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr2_4:28632947-28632966 | Msa0323900:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr2_4:28632948-28632967 | Msa0323900:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr2_4:28633034-28633053 | Msa0323900:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr2_4:28633060-28633079 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr2_4:28633107-28633126 | Msa0323900:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr2_4:28633209-28633228 | Msa0323900:intron | 25.0% |
| ! | TTTCTATTTACACAACACAA+TGG | + | chr2_4:28633433-28633452 | Msa0323900:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr2_4:28633474-28633493 | Msa0323900:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr2_4:28633695-28633714 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr2_4:28633787-28633806 | Msa0323900:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr2_4:28633861-28633880 | Msa0323900:CDS | 25.0% |
| !! | TCTTTTAATGCTTTTCTTTG+TGG | + | chr2_4:28633998-28634017 | Msa0323900:CDS | 25.0% |
| ! | TAAAGAATCAAACAAGTGAA+TGG | - | chr2_4:28634039-28634058 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr2_4:28634054-28634073 | Msa0323900:three_prime_UTR | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr2_4:28634193-28634212 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr2_4:28634228-28634247 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr2_4:28634228-28634247 | Msa0323900:three_prime_UTR | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr2_4:28634329-28634348 | Msa0323900:three_prime_UTR | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr2_4:28634330-28634349 | Msa0323900:three_prime_UTR | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+AGG | + | chr2_4:28634948-28634967 | Msa0323900:three_prime_UTR | 25.0% |
| ! | TGAGACTTTAACTAAAAAAG+CGG | + | chr2_4:28635079-28635098 | Msa0323900:three_prime_UTR | 25.0% |
| CCTTGATTCTTTATCACTAA+AGG | - | chr2_4:28632269-28632288 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+AGG | + | chr2_4:28632266-28632285 | Msa0323900:CDS | 30.0% | |
| TAAAGAATCAAGGAAGTCTT+TGG | + | chr2_4:28632276-28632295 | Msa0323900:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr2_4:28632441-28632460 | Msa0323900:intron | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr2_4:28632442-28632461 | Msa0323900:intron | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr2_4:28632531-28632550 | Msa0323900:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr2_4:28632564-28632583 | Msa0323900:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr2_4:28632643-28632662 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | + | chr2_4:28632745-28632764 | Msa0323900:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr2_4:28632789-28632808 | Msa0323900:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr2_4:28632799-28632818 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr2_4:28632913-28632932 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr2_4:28632985-28633004 | Msa0323900:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr2_4:28633038-28633057 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr2_4:28633042-28633061 | Msa0323900:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr2_4:28633121-28633140 | Msa0323900:intron | 30.0% |
| CTCGTATATGTGTGTTAATT+TGG | + | chr2_4:28633146-28633165 | Msa0323900:intron | 30.0% | |
| TGTACAAAGCACAAATTCTA+AGG | - | chr2_4:28633256-28633275 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr2_4:28633280-28633299 | None:intergenic | 30.0% | |
| CAAAGATCATAGGTGTTAAA+TGG | + | chr2_4:28633384-28633403 | Msa0323900:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr2_4:28633519-28633538 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr2_4:28633636-28633655 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr2_4:28633686-28633705 | Msa0323900:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr2_4:28633698-28633717 | Msa0323900:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr2_4:28633743-28633762 | Msa0323900:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr2_4:28633828-28633847 | Msa0323900:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr2_4:28633829-28633848 | Msa0323900:CDS | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr2_4:28634173-28634192 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr2_4:28634233-28634252 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr2_4:28634231-28634250 | Msa0323900:three_prime_UTR | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr2_4:28634288-28634307 | Msa0323900:three_prime_UTR | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | + | chr2_4:28634351-28634370 | Msa0323900:three_prime_UTR | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr2_4:28634401-28634420 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr2_4:28634402-28634421 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr2_4:28634413-28634432 | Msa0323900:three_prime_UTR | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr2_4:28634414-28634433 | Msa0323900:three_prime_UTR | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr2_4:28634510-28634529 | Msa0323900:three_prime_UTR | 30.0% |
| !!! | AAGATTTTGGAGTTCTTATG+TGG | + | chr2_4:28634523-28634542 | Msa0323900:three_prime_UTR | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr2_4:28634578-28634597 | Msa0323900:three_prime_UTR | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr2_4:28634745-28634764 | Msa0323900:three_prime_UTR | 30.0% |
| !! | GAGCAGTTTCTTATTTCTAA+AGG | + | chr2_4:28634793-28634812 | Msa0323900:three_prime_UTR | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr2_4:28634901-28634920 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr2_4:28634908-28634927 | Msa0323900:three_prime_UTR | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr2_4:28634919-28634938 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | + | chr2_4:28635017-28635036 | Msa0323900:three_prime_UTR | 30.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr2_4:28632190-28632209 | Msa0323900:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr2_4:28632347-28632366 | Msa0323900:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr2_4:28632430-28632449 | Msa0323900:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr2_4:28632467-28632486 | Msa0323900:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr2_4:28632525-28632544 | Msa0323900:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr2_4:28632530-28632549 | Msa0323900:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr2_4:28632682-28632701 | Msa0323900:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr2_4:28632744-28632763 | Msa0323900:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr2_4:28632825-28632844 | Msa0323900:CDS | 35.0% | |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr2_4:28633247-28633266 | None:intergenic | 35.0% |
| ! | CGTAAGAGTAGTGTGTTATT+TGG | + | chr2_4:28633539-28633558 | Msa0323900:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr2_4:28633582-28633601 | Msa0323900:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr2_4:28633711-28633730 | Msa0323900:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr2_4:28633915-28633934 | Msa0323900:CDS | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr2_4:28633928-28633947 | Msa0323900:CDS | 35.0% |
| AATCAAACAAGTGAATGGTC+TGG | - | chr2_4:28634034-28634053 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr2_4:28634068-28634087 | Msa0323900:three_prime_UTR | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr2_4:28634069-28634088 | Msa0323900:three_prime_UTR | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr2_4:28634403-28634422 | None:intergenic | 35.0% | |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr2_4:28634580-28634599 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr2_4:28634581-28634600 | Msa0323900:three_prime_UTR | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr2_4:28634847-28634866 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr2_4:28634974-28634993 | Msa0323900:three_prime_UTR | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr2_4:28634999-28635018 | Msa0323900:three_prime_UTR | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | + | chr2_4:28635018-28635037 | Msa0323900:three_prime_UTR | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr2_4:28632201-28632220 | Msa0323900:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr2_4:28632481-28632500 | None:intergenic | 40.0% |
| AGAACTAGACTGTCACATGT+TGG | - | chr2_4:28632493-28632512 | None:intergenic | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr2_4:28632751-28632770 | Msa0323900:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr2_4:28632955-28632974 | Msa0323900:CDS | 40.0% |
| ATTTGTGCTTTGTACAGCCA+TGG | + | chr2_4:28633260-28633279 | Msa0323900:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr2_4:28633374-28633393 | Msa0323900:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr2_4:28633378-28633397 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr2_4:28633503-28633522 | Msa0323900:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr2_4:28633647-28633666 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr2_4:28633646-28633665 | Msa0323900:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr2_4:28633887-28633906 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr2_4:28633927-28633946 | Msa0323900:CDS | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr2_4:28634087-28634106 | Msa0323900:three_prime_UTR | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr2_4:28634096-28634115 | Msa0323900:three_prime_UTR | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr2_4:28634244-28634263 | Msa0323900:three_prime_UTR | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr2_4:28634245-28634264 | Msa0323900:three_prime_UTR | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | + | chr2_4:28634367-28634386 | Msa0323900:three_prime_UTR | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr2_4:28634476-28634495 | Msa0323900:three_prime_UTR | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr2_4:28634477-28634496 | Msa0323900:three_prime_UTR | 40.0% | |
| CTGGAATCTACCATGAATGT+TGG | + | chr2_4:28634634-28634653 | Msa0323900:three_prime_UTR | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr2_4:28634647-28634666 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr2_4:28634671-28634690 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr2_4:28634756-28634775 | Msa0323900:three_prime_UTR | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr2_4:28634839-28634858 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr2_4:28634925-28634944 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr2_4:28634987-28635006 | None:intergenic | 40.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr2_4:28632535-28632554 | Msa0323900:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr2_4:28632544-28632563 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr2_4:28632547-28632566 | Msa0323900:CDS | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr2_4:28632831-28632850 | Msa0323900:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr2_4:28632834-28632853 | Msa0323900:CDS | 45.0% | |
| AATGAAGCTCTCACGAAACC+AGG | + | chr2_4:28632892-28632911 | Msa0323900:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr2_4:28632933-28632952 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | + | chr2_4:28633882-28633901 | Msa0323900:CDS | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr2_4:28633933-28633952 | Msa0323900:CDS | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr2_4:28633950-28633969 | Msa0323900:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr2_4:28634146-28634165 | Msa0323900:three_prime_UTR | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | + | chr2_4:28634383-28634402 | Msa0323900:three_prime_UTR | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr2_4:28634396-28634415 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr2_4:28634478-28634497 | Msa0323900:three_prime_UTR | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr2_4:28634498-28634517 | None:intergenic | 45.0% | |
| GATTCCAGCTTATCGACAGA+CGG | - | chr2_4:28634622-28634641 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr2_4:28634768-28634787 | Msa0323900:three_prime_UTR | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | + | chr2_4:28634869-28634888 | Msa0323900:three_prime_UTR | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | - | chr2_4:28632655-28632674 | None:intergenic | 50.0% | |
| !! | GTGATGGGTCAAGGAGTTAG+AGG | + | chr2_4:28632760-28632779 | Msa0323900:CDS | 50.0% |
| ACCATATACACAGACCAGGC+TGG | + | chr2_4:28633650-28633669 | Msa0323900:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr2_4:28633654-28633673 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr2_4:28633718-28633737 | Msa0323900:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr2_4:28633719-28633738 | Msa0323900:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr2_4:28634151-28634170 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr2_4:28634434-28634453 | Msa0323900:three_prime_UTR | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr2_4:28634720-28634739 | Msa0323900:three_prime_UTR | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr2_4:28634761-28634780 | Msa0323900:three_prime_UTR | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | + | chr2_4:28634868-28634887 | Msa0323900:three_prime_UTR | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr2_4:28634883-28634902 | None:intergenic | 50.0% |
| GGGTCAAGGAGTTAGAGGCA+CGG | + | chr2_4:28632765-28632784 | Msa0323900:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr2_4:28632838-28632857 | Msa0323900:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr2_4:28633667-28633686 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr2_4:28634152-28634171 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr2_4:28634760-28634779 | Msa0323900:three_prime_UTR | 55.0% | |
| GCGTCCGTCTGTCGATAAGC+TGG | + | chr2_4:28634615-28634634 | Msa0323900:three_prime_UTR | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr2_4:28634723-28634742 | Msa0323900:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 28632181 | 28635187 | 28632181 | ID=Msa0323900;Name=Msa0323900 |
| chr2_4 | mRNA | 28632181 | 28635187 | 28632181 | ID=Msa0323900-mRNA-1;Parent=Msa0323900;Name=Msa0323900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.33|1|1|1|3|1136|446 |
| chr2_4 | exon | 28632181 | 28632370 | 28632181 | ID=Msa0323900-mRNA-1:exon:9796;Parent=Msa0323900-mRNA-1 |
| chr2_4 | exon | 28632452 | 28633063 | 28632452 | ID=Msa0323900-mRNA-1:exon:9797;Parent=Msa0323900-mRNA-1 |
| chr2_4 | exon | 28633513 | 28635187 | 28633513 | ID=Msa0323900-mRNA-1:exon:9798;Parent=Msa0323900-mRNA-1 |
| chr2_4 | CDS | 28632181 | 28632370 | 28632181 | ID=Msa0323900-mRNA-1:cds;Parent=Msa0323900-mRNA-1 |
| chr2_4 | CDS | 28632452 | 28633063 | 28632452 | ID=Msa0323900-mRNA-1:cds;Parent=Msa0323900-mRNA-1 |
| chr2_4 | CDS | 28633513 | 28634051 | 28633513 | ID=Msa0323900-mRNA-1:cds;Parent=Msa0323900-mRNA-1 |
| chr2_4 | three_prime_UTR | 28634052 | 28635187 | 28634052 | ID=Msa0323900-mRNA-1:three_prime_utr;Parent=Msa0323900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
