Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324670 | XP_003595389.1 | 94.737 | 209 | 9 | 1 | 1 | 209 | 1 | 207 | 1.12e-140 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324670 | sp|Q9C5K8|TIF3B_ARATH | 52.586 | 116 | 47 | 4 | 58 | 171 | 57 | 166 | 7.60e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0324670 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324670 | MtrunA17_Chr2g0302041 | 94.737 | 209 | 9 | 1 | 1 | 209 | 1 | 207 | 1.03e-144 | 401 |
| Msa0324670 | MtrunA17_Chr4g0069721 | 58.209 | 134 | 48 | 3 | 38 | 168 | 25 | 153 | 5.54e-43 | 142 |
| Msa0324670 | MtrunA17_Chr5g0399851 | 35.000 | 120 | 67 | 3 | 57 | 176 | 20 | 128 | 3.71e-14 | 67.0 |
| Msa0324670 | MtrunA17_Chr2g0301131 | 30.469 | 128 | 66 | 3 | 58 | 168 | 112 | 233 | 6.58e-14 | 68.6 |
| Msa0324670 | MtrunA17_Chr5g0399881 | 29.825 | 114 | 63 | 2 | 58 | 171 | 44 | 140 | 2.07e-12 | 63.2 |
| Msa0324670 | MtrunA17_Chr4g0070271 | 31.148 | 122 | 47 | 3 | 49 | 168 | 90 | 176 | 3.29e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324670 | AT5G20900.1 | 52.586 | 116 | 47 | 4 | 58 | 171 | 57 | 166 | 7.72e-30 | 109 |
| Msa0324670 | AT3G43440.1 | 39.535 | 129 | 52 | 4 | 57 | 183 | 130 | 234 | 6.53e-16 | 73.9 |
| Msa0324670 | AT3G43440.1 | 39.623 | 106 | 34 | 3 | 56 | 161 | 43 | 118 | 8.81e-13 | 65.5 |
| Msa0324670 | AT3G43440.2 | 37.500 | 128 | 54 | 4 | 56 | 181 | 43 | 146 | 1.55e-15 | 71.2 |
| Msa0324670 | AT1G74950.1 | 37.903 | 124 | 48 | 4 | 59 | 168 | 120 | 228 | 4.18e-13 | 66.6 |
| Msa0324670 | AT1G19180.2 | 35.897 | 117 | 61 | 3 | 54 | 168 | 56 | 160 | 7.62e-13 | 64.7 |
| Msa0324670 | AT1G19180.1 | 35.897 | 117 | 61 | 3 | 54 | 168 | 122 | 226 | 1.89e-12 | 64.7 |
| Msa0324670 | AT1G19180.3 | 35.897 | 117 | 61 | 3 | 54 | 168 | 122 | 226 | 1.89e-12 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGAAGAGAATTATTTA+AGG | 0.202725 | 2_4:-30535775 | None:intergenic |
| GTTAAGCTTGATGTTGTTAT+TGG | 0.216843 | 2_4:+30539639 | Msa0324670:three_prime_UTR |
| CAGCTTACCATCTTCTATAA+TGG | 0.263317 | 2_4:+30538522 | Msa0324670:CDS |
| ACTCAAGTATCTTCCATTCT+TGG | 0.273933 | 2_4:-30539665 | None:intergenic |
| TTCCTTCACCTGTTCCTTCA+AGG | 0.303820 | 2_4:+30538754 | Msa0324670:CDS |
| TTTAGGTCAATTCCAGCATC+TGG | 0.343952 | 2_4:+30538471 | Msa0324670:intron |
| TCCTTCATTGAAACCGAATC+TGG | 0.348326 | 2_4:-30539222 | None:intergenic |
| TTACATAAACAGTGATTCAT+AGG | 0.354830 | 2_4:+30539617 | Msa0324670:three_prime_UTR |
| TTGAGCTGAATTCTAGTGTT+TGG | 0.362877 | 2_4:+30539284 | Msa0324670:exon |
| CTGCAGATGGAACTCTTTGC+AGG | 0.368490 | 2_4:-30538834 | None:intergenic |
| AAAGTAACCGGCAATGATTA+TGG | 0.369608 | 2_4:+30535655 | Msa0324670:five_prime_UTR |
| TGCTGACAATTCGCCAGATT+CGG | 0.379407 | 2_4:+30539209 | Msa0324670:CDS |
| TCTTCTCCTATTGCTGTTGA+TGG | 0.379691 | 2_4:+30535883 | Msa0324670:CDS |
| AGTGAATGTCTGCGTGCTAT+TGG | 0.383673 | 2_4:-30538990 | None:intergenic |
| CTCAAGTATCTTCCATTCTT+GGG | 0.392502 | 2_4:-30539664 | None:intergenic |
| AGCTTACCATCTTCTATAAT+GGG | 0.398580 | 2_4:+30538523 | Msa0324670:CDS |
| TTGTAGGGTTCTTCAACAAA+TGG | 0.406913 | 2_4:+30535813 | Msa0324670:exon |
| GAAAGAAGAGAATTATTTAA+GGG | 0.411915 | 2_4:-30535774 | None:intergenic |
| GCCAGATTCGGTTTCAATGA+AGG | 0.420770 | 2_4:+30539221 | Msa0324670:CDS |
| ACAGGTGAAGGAACGGGAAT+GGG | 0.422899 | 2_4:-30538744 | None:intergenic |
| CACATGTTGCTTAAAGTAAC+CGG | 0.424321 | 2_4:+30535643 | Msa0324670:five_prime_UTR |
| CTAGCACCATCAACAGCAAT+AGG | 0.441302 | 2_4:-30535889 | None:intergenic |
| GCTAGCTCCAACATGGTTGA+GGG | 0.442261 | 2_4:+30535907 | Msa0324670:CDS |
| GGTTATACTTTGTGTTCTCT+CGG | 0.450571 | 2_4:+30539305 | Msa0324670:three_prime_UTR |
| ACTTCGAAGTTGCATCTCTC+TGG | 0.455499 | 2_4:+30539438 | Msa0324670:three_prime_UTR |
| TTGTTATTGGATCCCAAGAA+TGG | 0.461503 | 2_4:+30539652 | Msa0324670:three_prime_UTR |
| TGACCAACCATAATCATTGC+CGG | 0.463542 | 2_4:-30535662 | None:intergenic |
| TACTTTGTGTTCTCTCGGCA+AGG | 0.465009 | 2_4:+30539310 | Msa0324670:three_prime_UTR |
| AATGGATGGTGTTACTGTTA+AGG | 0.469101 | 2_4:+30535831 | Msa0324670:exon |
| CTTCTTCGTTTCACTAGACT+TGG | 0.471119 | 2_4:-30538706 | None:intergenic |
| ACTGGATTCATTCCAGATGC+TGG | 0.472641 | 2_4:-30538483 | None:intergenic |
| TGCTAGCTCCAACATGGTTG+AGG | 0.475742 | 2_4:+30535906 | Msa0324670:CDS |
| TGATGGAATACCTGCAGAAA+AGG | 0.477638 | 2_4:+30538560 | Msa0324670:CDS |
| GGGAGTATTTGTATCTATGA+TGG | 0.478209 | 2_4:+30538543 | Msa0324670:CDS |
| GCAGTTCCATGTGGCGAAGA+AGG | 0.484372 | 2_4:-30538777 | None:intergenic |
| TCTAGAACAGTAAACTTCTC+TGG | 0.487430 | 2_4:-30535859 | None:intergenic |
| TGTGGCGAAGAAGGCCTTGA+AGG | 0.491077 | 2_4:-30538768 | None:intergenic |
| CTGCAAAGAGTTCCATCTGC+AGG | 0.496647 | 2_4:+30538835 | Msa0324670:CDS |
| ATGGAACTCTTTGCAGGAAA+GGG | 0.502464 | 2_4:-30538828 | None:intergenic |
| AACAGGTGAAGGAACGGGAA+TGG | 0.503659 | 2_4:-30538745 | None:intergenic |
| AATACTCCCATTATAGAAGA+TGG | 0.513403 | 2_4:-30538529 | None:intergenic |
| TTCTTCAGAAGCGTCGAGAC+AGG | 0.516859 | 2_4:+30539021 | Msa0324670:CDS |
| GATGGAACTCTTTGCAGGAA+AGG | 0.518470 | 2_4:-30538829 | None:intergenic |
| GAAGGAACAGGTGAAGGAAC+GGG | 0.518842 | 2_4:-30538750 | None:intergenic |
| CAAGATGCAGCAGATATAGT+TGG | 0.523520 | 2_4:-30539264 | None:intergenic |
| GAAGAAGGCCTTGAAGGAAC+AGG | 0.524051 | 2_4:-30538762 | None:intergenic |
| AGTTCCATCTGCAGGCTACA+AGG | 0.525740 | 2_4:+30538843 | Msa0324670:CDS |
| TGAGTTGTATTAGCAATCAC+TGG | 0.534299 | 2_4:-30538501 | None:intergenic |
| GTTGGCTGAAATTCCTCCTG+TGG | 0.539527 | 2_4:-30539246 | None:intergenic |
| TCAAGGCCTTCTTCGCCACA+TGG | 0.540794 | 2_4:+30538771 | Msa0324670:CDS |
| TGATAATATCGCTTCATCAC+AGG | 0.551691 | 2_4:+30538800 | Msa0324670:CDS |
| CACACCTTGTAGCCTGCAGA+TGG | 0.554634 | 2_4:-30538847 | None:intergenic |
| ACTTTGTGTTCTCTCGGCAA+GGG | 0.557313 | 2_4:+30539311 | Msa0324670:three_prime_UTR |
| CATTGACCCCTCAACCATGT+TGG | 0.571586 | 2_4:-30535914 | None:intergenic |
| GGCCTTGAAGGAACAGGTGA+AGG | 0.574210 | 2_4:-30538756 | None:intergenic |
| TGAAGGAACAGGTGAAGGAA+CGG | 0.580717 | 2_4:-30538751 | None:intergenic |
| GGTTTCAATGAAGGAACCAC+AGG | 0.590783 | 2_4:+30539230 | Msa0324670:CDS |
| AACAAAGGTAGCTGACAACA+TGG | 0.591184 | 2_4:+30539173 | Msa0324670:CDS |
| TAACCGGCAATGATTATGGT+TGG | 0.602717 | 2_4:+30535659 | Msa0324670:five_prime_UTR |
| TGATGGTGCTAGCTCCAACA+TGG | 0.603125 | 2_4:+30535900 | Msa0324670:CDS |
| AGGGTTCTTCAACAAATGGA+TGG | 0.605649 | 2_4:+30535817 | Msa0324670:exon |
| TTCAATGAAGGAACCACAGG+AGG | 0.608188 | 2_4:+30539233 | Msa0324670:CDS |
| GACAACATGGAGAACAACTT+CGG | 0.616517 | 2_4:+30539186 | Msa0324670:CDS |
| ATTATCGAACATCAACACAT+TGG | 0.617723 | 2_4:-30539548 | None:intergenic |
| CTAGCTCCAACATGGTTGAG+GGG | 0.656060 | 2_4:+30535908 | Msa0324670:CDS |
| ATATTATCAGCAGTTCCATG+TGG | 0.739266 | 2_4:-30538786 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACTTTGTAAAATTTT+TGG | + | chr2_4:30535740-30535759 | Msa0324670:five_prime_UTR | 10.0% |
| !!! | TAAAAAAAAACATGCTTTTT+TGG | - | chr2_4:30535980-30535999 | None:intergenic | 15.0% |
| !!! | ATATAAATTGATACCATTTT+AGG | - | chr2_4:30536202-30536221 | None:intergenic | 15.0% |
| !!! | ATTTTAACTCAAATAACTAA+AGG | - | chr2_4:30536250-30536269 | None:intergenic | 15.0% |
| !! | AAGTATCAAAAATTGATATA+AGG | + | chr2_4:30538051-30538070 | Msa0324670:intron | 15.0% |
| !! | CATTACAATATTCCAAAAAA+AGG | + | chr2_4:30535683-30535702 | Msa0324670:five_prime_UTR | 20.0% |
| !! | GAAAGAAGAGAATTATTTAA+GGG | - | chr2_4:30535777-30535796 | None:intergenic | 20.0% |
| !! | TGAAAGAAGAGAATTATTTA+AGG | - | chr2_4:30535778-30535797 | None:intergenic | 20.0% |
| !! | CAAAACAGAAACAAAAAAAA+GGG | - | chr2_4:30536061-30536080 | None:intergenic | 20.0% |
| !! | TCAAAACAGAAACAAAAAAA+AGG | - | chr2_4:30536062-30536081 | None:intergenic | 20.0% |
| !!! | TAGCTTGGTTATTTTAATTT+TGG | + | chr2_4:30536097-30536116 | Msa0324670:intron | 20.0% |
| !!! | ACTATGAAAAACGAAATTTT+CGG | + | chr2_4:30536330-30536349 | Msa0324670:intron | 20.0% |
| !! | TTCTATTATGCAATGAATTA+GGG | - | chr2_4:30536611-30536630 | None:intergenic | 20.0% |
| !! | TAATTCATTGCATAATAGAA+CGG | + | chr2_4:30536611-30536630 | Msa0324670:intron | 20.0% |
| !! | ATATGAAAATCGAAAAGATT+AGG | - | chr2_4:30536987-30537006 | None:intergenic | 20.0% |
| !!! | CATAATTTTACTTTTCTGAT+CGG | + | chr2_4:30537521-30537540 | Msa0324670:intron | 20.0% |
| !!! | TAGCTAAGAGTTTAAAATAA+AGG | - | chr2_4:30537810-30537829 | None:intergenic | 20.0% |
| !!! | ACTAGATATTGTTTCATTTT+AGG | - | chr2_4:30537852-30537871 | None:intergenic | 20.0% |
| !! | ATAATTTATGTTTGTACTAC+AGG | + | chr2_4:30539115-30539134 | Msa0324670:intron | 20.0% |
| !! | TTTATGTAAGAATGAAAAAC+AGG | - | chr2_4:30539606-30539625 | None:intergenic | 20.0% |
| !!! | CAAAGTTTTTTGAGTTTCAA+TGG | - | chr2_4:30535731-30535750 | None:intergenic | 25.0% |
| !!! | AGTTTTGTTGATCTATTTGT+AGG | + | chr2_4:30535797-30535816 | Msa0324670:five_prime_UTR | 25.0% |
| !!! | GTTTTGTTGATCTATTTGTA+GGG | + | chr2_4:30535798-30535817 | Msa0324670:five_prime_UTR | 25.0% |
| !! | TTCCAATTTTGTACCTAAAA+TGG | + | chr2_4:30536186-30536205 | Msa0324670:intron | 25.0% |
| !!! | TACCATTTTAGGTACAAAAT+TGG | - | chr2_4:30536191-30536210 | None:intergenic | 25.0% |
| !!! | TTTCGTTTTTCATAGTCAAA+TGG | - | chr2_4:30536326-30536345 | None:intergenic | 25.0% |
| ! | TTATGAGAAACCATTAAACA+AGG | - | chr2_4:30536376-30536395 | None:intergenic | 25.0% |
| ! | ACAAACAATTGATGTTTGTA+TGG | + | chr2_4:30536478-30536497 | Msa0324670:intron | 25.0% |
| ! | GTTCTATTATGCAATGAATT+AGG | - | chr2_4:30536612-30536631 | None:intergenic | 25.0% |
| ! | AAGAACTCAACGATTAATTA+TGG | - | chr2_4:30536685-30536704 | None:intergenic | 25.0% |
| ! | TGTTCTTATCTTAGTAGTTA+AGG | + | chr2_4:30536780-30536799 | Msa0324670:intron | 25.0% |
| ! | TTAGTAGTTAAGGATTGTTA+AGG | + | chr2_4:30536790-30536809 | Msa0324670:intron | 25.0% |
| ! | TAGTAGTTAAGGATTGTTAA+GGG | + | chr2_4:30536791-30536810 | Msa0324670:intron | 25.0% |
| ! | ATTGTTAAGGGATAGAATAA+AGG | + | chr2_4:30536803-30536822 | Msa0324670:intron | 25.0% |
| ! | TTGTTAAGGGATAGAATAAA+GGG | + | chr2_4:30536804-30536823 | Msa0324670:intron | 25.0% |
| !! | TTTCTTTTCAATTCAACTCT+TGG | + | chr2_4:30537017-30537036 | Msa0324670:intron | 25.0% |
| !!! | TGTCTTCATTGATTTAGAAA+AGG | - | chr2_4:30537063-30537082 | None:intergenic | 25.0% |
| !! | TAATTTGACTTATGACAGAA+AGG | - | chr2_4:30537154-30537173 | None:intergenic | 25.0% |
| ! | AAAAGTCCATCATATAAACA+TGG | - | chr2_4:30537247-30537266 | None:intergenic | 25.0% |
| !!! | ATGTTTATATGATGGACTTT+TGG | + | chr2_4:30537246-30537265 | Msa0324670:intron | 25.0% |
| !!! | ACACTGGATATTTTGTTTTT+TGG | + | chr2_4:30537303-30537322 | Msa0324670:intron | 25.0% |
| ! | ATTTCATTCAAAACAGAACA+GGG | - | chr2_4:30537453-30537472 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGAATGAAATCAT+TGG | + | chr2_4:30537456-30537475 | Msa0324670:intron | 25.0% |
| ! | TCAGAAAAGTAAAATTATGC+TGG | - | chr2_4:30537520-30537539 | None:intergenic | 25.0% |
| ! | AATGGAATAAGTAATTACAG+TGG | - | chr2_4:30537637-30537656 | None:intergenic | 25.0% |
| ! | CTGAAAATTCATGCATATTT+CGG | + | chr2_4:30537683-30537702 | Msa0324670:intron | 25.0% |
| ! | TTAGTTTATGTTTATGCGTT+TGG | + | chr2_4:30537937-30537956 | Msa0324670:intron | 25.0% |
| !! | TTGACTTAATTCCACTATTT+TGG | + | chr2_4:30538082-30538101 | Msa0324670:intron | 25.0% |
| ! | TATATGTATCAGTGGTTAAT+TGG | - | chr2_4:30538122-30538141 | None:intergenic | 25.0% |
| !! | AACCACTGATACATATATTT+TGG | + | chr2_4:30538125-30538144 | Msa0324670:intron | 25.0% |
| ! | AACCAAAATATATGTATCAG+TGG | - | chr2_4:30538130-30538149 | None:intergenic | 25.0% |
| ! | GCAAATATACGAAATATATG+AGG | + | chr2_4:30538270-30538289 | Msa0324670:intron | 25.0% |
| !! | GCTTTATAACTTTCTCTTTT+AGG | + | chr2_4:30538454-30538473 | Msa0324670:intron | 25.0% |
| ! | TTTACTTTCTATTCTGTAAC+AGG | + | chr2_4:30538650-30538669 | Msa0324670:intron | 25.0% |
| ! | TAGTCGAAGACATAATTAAT+AGG | - | chr2_4:30538879-30538898 | None:intergenic | 25.0% |
| !! | CATACACAAAATTTGAAACA+TGG | - | chr2_4:30539060-30539079 | None:intergenic | 25.0% |
| ! | TTACATAAACAGTGATTCAT+AGG | + | chr2_4:30539617-30539636 | Msa0324670:three_prime_UTR | 25.0% |
| !!! | GCTGTTTTGATTCCTTTTTT+TGG | - | chr2_4:30535698-30535717 | None:intergenic | 30.0% |
| AACAAAAAAAAGGGTCTTGA+AGG | - | chr2_4:30536052-30536071 | None:intergenic | 30.0% | |
| TGAATAATTACTCACTAGCT+TGG | + | chr2_4:30536082-30536101 | Msa0324670:intron | 30.0% | |
| CTCAAATAACTAAAGGTTAC+AGG | - | chr2_4:30536243-30536262 | None:intergenic | 30.0% | |
| ! | AAATTGTTCTGATGAGTTGA+TGG | + | chr2_4:30536266-30536285 | Msa0324670:intron | 30.0% |
| CGGTTAAATTGTTTATCCTA+TGG | + | chr2_4:30536350-30536369 | Msa0324670:intron | 30.0% | |
| ! | CAAACATCAATTGTTTGTTG+AGG | - | chr2_4:30536476-30536495 | None:intergenic | 30.0% |
| GAAAGGTTACAATAGAAATC+TGG | - | chr2_4:30536731-30536750 | None:intergenic | 30.0% | |
| ! | TACATCTTTTCATTGAACCT+TGG | + | chr2_4:30537108-30537127 | Msa0324670:intron | 30.0% |
| ! | TCTCAAATTACTCTTTTCGT+AGG | + | chr2_4:30537185-30537204 | Msa0324670:intron | 30.0% |
| CGGTCTATGTAAGATATAAT+AGG | - | chr2_4:30537219-30537238 | None:intergenic | 30.0% | |
| ! | ATCATATAAACATGGTGTTG+CGG | - | chr2_4:30537239-30537258 | None:intergenic | 30.0% |
| ! | TGATTGAAGAACAAAAGCAT+AGG | + | chr2_4:30537357-30537376 | Msa0324670:intron | 30.0% |
| GATTTCATTCAAAACAGAAC+AGG | - | chr2_4:30537454-30537473 | None:intergenic | 30.0% | |
| !!! | AGATGTATCACTGTTTTTGA+TGG | + | chr2_4:30537494-30537513 | Msa0324670:intron | 30.0% |
| GTGAATTTCATCAACTTATG+CGG | - | chr2_4:30537572-30537591 | None:intergenic | 30.0% | |
| TCTTGCTGAAACATATGTAA+TGG | - | chr2_4:30537655-30537674 | None:intergenic | 30.0% | |
| ACATATGTTTCAGCAAGAAT+AGG | + | chr2_4:30537657-30537676 | Msa0324670:intron | 30.0% | |
| ACACAAAAACTGTTATGTCA+AGG | + | chr2_4:30537766-30537785 | Msa0324670:intron | 30.0% | |
| GCAAAATCATTGTATAACAG+TGG | - | chr2_4:30538019-30538038 | None:intergenic | 30.0% | |
| ! | CTGTTATACAATGATTTTGC+TGG | + | chr2_4:30538019-30538038 | Msa0324670:intron | 30.0% |
| TTCAAAACACACCAAAATAG+TGG | - | chr2_4:30538096-30538115 | None:intergenic | 30.0% | |
| !!! | ACTATTTTGGTGTGTTTTGA+AGG | + | chr2_4:30538095-30538114 | Msa0324670:intron | 30.0% |
| !!! | CTATTTTGGTGTGTTTTGAA+GGG | + | chr2_4:30538096-30538115 | Msa0324670:intron | 30.0% |
| !! | GGCTTTCTAGAATAGATTTA+TGG | - | chr2_4:30538306-30538325 | None:intergenic | 30.0% |
| ATTGGTGGAAATTGTAACTT+TGG | - | chr2_4:30538327-30538346 | None:intergenic | 30.0% | |
| TTACAATTTCCACCAATATC+AGG | + | chr2_4:30538330-30538349 | Msa0324670:intron | 30.0% | |
| CTACTTTAGTCATCAAAAAC+TGG | + | chr2_4:30538429-30538448 | Msa0324670:intron | 30.0% | |
| AGCTTACCATCTTCTATAAT+GGG | + | chr2_4:30538523-30538542 | Msa0324670:CDS | 30.0% | |
| AATACTCCCATTATAGAAGA+TGG | - | chr2_4:30538532-30538551 | None:intergenic | 30.0% | |
| CACACGAGACATATAAATTA+TGG | - | chr2_4:30538941-30538960 | None:intergenic | 30.0% | |
| CATAATTTATATGTCTCGTG+TGG | + | chr2_4:30538939-30538958 | Msa0324670:intron | 30.0% | |
| TTTATGTTTGTACTACAGGT+TGG | + | chr2_4:30539119-30539138 | Msa0324670:intron | 30.0% | |
| TTATGTTTGTACTACAGGTT+GGG | + | chr2_4:30539120-30539139 | Msa0324670:intron | 30.0% | |
| ATTATCGAACATCAACACAT+TGG | - | chr2_4:30539551-30539570 | None:intergenic | 30.0% | |
| TGTAAGAATGAAAAACAGGA+AGG | - | chr2_4:30539602-30539621 | None:intergenic | 30.0% | |
| GTTAAGCTTGATGTTGTTAT+TGG | + | chr2_4:30539639-30539658 | Msa0324670:three_prime_UTR | 30.0% | |
| ! | CACATGTTGCTTAAAGTAAC+CGG | + | chr2_4:30535643-30535662 | Msa0324670:five_prime_UTR | 35.0% |
| AAAGTAACCGGCAATGATTA+TGG | + | chr2_4:30535655-30535674 | Msa0324670:five_prime_UTR | 35.0% | |
| TTGTAGGGTTCTTCAACAAA+TGG | + | chr2_4:30535813-30535832 | Msa0324670:exon | 35.0% | |
| !! | AATGGATGGTGTTACTGTTA+AGG | + | chr2_4:30535831-30535850 | Msa0324670:exon | 35.0% |
| ! | TCTAGAACAGTAAACTTCTC+TGG | - | chr2_4:30535862-30535881 | None:intergenic | 35.0% |
| !! | TATCCTATGGCCTTGTTTAA+TGG | + | chr2_4:30536363-30536382 | Msa0324670:intron | 35.0% |
| AAACCATTAAACAAGGCCAT+AGG | - | chr2_4:30536369-30536388 | None:intergenic | 35.0% | |
| TGTTGAGTTTGTGTTGAGTA+TGG | + | chr2_4:30536511-30536530 | Msa0324670:intron | 35.0% | |
| AAATACTACGAGCCACTTAT+CGG | - | chr2_4:30536547-30536566 | None:intergenic | 35.0% | |
| CAACGATTAATTATGGAGCT+CGG | - | chr2_4:30536678-30536697 | None:intergenic | 35.0% | |
| CATCTGATTGTACAGTAGAA+AGG | - | chr2_4:30536748-30536767 | None:intergenic | 35.0% | |
| AGAGTAGTTAGTTAGCTGTT+TGG | + | chr2_4:30536859-30536878 | Msa0324670:intron | 35.0% | |
| TAGTTAGTTAGCTGTTTGGT+TGG | + | chr2_4:30536863-30536882 | Msa0324670:intron | 35.0% | |
| AGTTAGTTAGCTGTTTGGTT+GGG | + | chr2_4:30536864-30536883 | Msa0324670:intron | 35.0% | |
| AGTCATGACTCTATTGTGAA+AGG | + | chr2_4:30536940-30536959 | Msa0324670:intron | 35.0% | |
| GTCATGACTCTATTGTGAAA+GGG | + | chr2_4:30536941-30536960 | Msa0324670:intron | 35.0% | |
| ATTAGGAGTCTCTTCTTCAA+GGG | - | chr2_4:30536970-30536989 | None:intergenic | 35.0% | |
| AAAAGGCTTGTGACAATGTT+AGG | - | chr2_4:30537046-30537065 | None:intergenic | 35.0% | |
| ! | GTAAGATATAATAGGCGTTG+TGG | - | chr2_4:30537211-30537230 | None:intergenic | 35.0% |
| GCAACACCATGTTTATATGA+TGG | + | chr2_4:30537238-30537257 | Msa0324670:intron | 35.0% | |
| ! | ACAAAAGCATAGGAAACCAT+TGG | + | chr2_4:30537367-30537386 | Msa0324670:intron | 35.0% |
| ! | CAAAAGCATAGGAAACCATT+GGG | + | chr2_4:30537368-30537387 | Msa0324670:intron | 35.0% |
| GTAGATTTATTCGATTGCAG+AGG | - | chr2_4:30537400-30537419 | None:intergenic | 35.0% | |
| TATGTTTCAGCAAGAATAGG+AGG | + | chr2_4:30537660-30537679 | Msa0324670:intron | 35.0% | |
| AAAGGTTCATGATTGTGATG+CGG | - | chr2_4:30537792-30537811 | None:intergenic | 35.0% | |
| AAATGTGATTAACCAGCGAA+TGG | - | chr2_4:30537898-30537917 | None:intergenic | 35.0% | |
| ATAGATAAGCCTGATATTGG+TGG | - | chr2_4:30538342-30538361 | None:intergenic | 35.0% | |
| AGCATAGATAAGCCTGATAT+TGG | - | chr2_4:30538345-30538364 | None:intergenic | 35.0% | |
| TGAGTTGTATTAGCAATCAC+TGG | - | chr2_4:30538504-30538523 | None:intergenic | 35.0% | |
| CAGCTTACCATCTTCTATAA+TGG | + | chr2_4:30538522-30538541 | Msa0324670:CDS | 35.0% | |
| !! | GGGAGTATTTGTATCTATGA+TGG | + | chr2_4:30538543-30538562 | Msa0324670:CDS | 35.0% |
| ATATTATCAGCAGTTCCATG+TGG | - | chr2_4:30538789-30538808 | None:intergenic | 35.0% | |
| TGATAATATCGCTTCATCAC+AGG | + | chr2_4:30538800-30538819 | Msa0324670:CDS | 35.0% | |
| ! | CACAAAATTTGAAACATGGC+AGG | - | chr2_4:30539056-30539075 | None:intergenic | 35.0% |
| !!! | TTGTCAGCTACCTTTGTTTT+TGG | - | chr2_4:30539171-30539190 | None:intergenic | 35.0% |
| TTGAGCTGAATTCTAGTGTT+TGG | + | chr2_4:30539284-30539303 | Msa0324670:exon | 35.0% | |
| GGTTATACTTTGTGTTCTCT+CGG | + | chr2_4:30539305-30539324 | Msa0324670:three_prime_UTR | 35.0% | |
| ! | TTGTTATTGGATCCCAAGAA+TGG | + | chr2_4:30539652-30539671 | Msa0324670:three_prime_UTR | 35.0% |
| TAACCGGCAATGATTATGGT+TGG | + | chr2_4:30535659-30535678 | Msa0324670:five_prime_UTR | 40.0% | |
| TGACCAACCATAATCATTGC+CGG | - | chr2_4:30535665-30535684 | None:intergenic | 40.0% | |
| AGGGTTCTTCAACAAATGGA+TGG | + | chr2_4:30535817-30535836 | Msa0324670:exon | 40.0% | |
| ! | TCTTCTCCTATTGCTGTTGA+TGG | + | chr2_4:30535883-30535902 | Msa0324670:CDS | 40.0% |
| ! | GTTTGTTGAGGAGAAAAGCA+GGG | - | chr2_4:30536464-30536483 | None:intergenic | 40.0% |
| ! | TGTTTGTTGAGGAGAAAAGC+AGG | - | chr2_4:30536465-30536484 | None:intergenic | 40.0% |
| GTACATCTCTAACAGTTGAG+CGG | - | chr2_4:30536645-30536664 | None:intergenic | 40.0% | |
| GTTAGAGATGTACACGCAAT+TGG | + | chr2_4:30536652-30536671 | Msa0324670:intron | 40.0% | |
| GATTAGGAGTCTCTTCTTCA+AGG | - | chr2_4:30536971-30536990 | None:intergenic | 40.0% | |
| ACCTTGGTATGTATCCTTCA+TGG | + | chr2_4:30537124-30537143 | Msa0324670:intron | 40.0% | |
| ACCATGAAGGATACATACCA+AGG | - | chr2_4:30537128-30537147 | None:intergenic | 40.0% | |
| TATCTGCTGATGGCAGATTA+TGG | - | chr2_4:30537279-30537298 | None:intergenic | 40.0% | |
| CAGTGTTATCTATCTGCTGA+TGG | - | chr2_4:30537289-30537308 | None:intergenic | 40.0% | |
| CATCAGCAGATAGATAACAC+TGG | + | chr2_4:30537287-30537306 | Msa0324670:intron | 40.0% | |
| ATCTACTGAAGACGTGTTTC+AGG | + | chr2_4:30537414-30537433 | Msa0324670:intron | 40.0% | |
| ACGTGTAACCAAATCGAACA+CGG | + | chr2_4:30537590-30537609 | Msa0324670:intron | 40.0% | |
| ! | ACTTTTGTCCGTGTTCGATT+TGG | - | chr2_4:30537601-30537620 | None:intergenic | 40.0% |
| GCAGTCAAATACTGTTGATG+TGG | + | chr2_4:30537712-30537731 | Msa0324670:intron | 40.0% | |
| ! | TGTTGATGTGGCCTTAATCA+TGG | + | chr2_4:30537724-30537743 | Msa0324670:intron | 40.0% |
| GTGGAAGCTCATAGAAAATG+TGG | - | chr2_4:30538000-30538019 | None:intergenic | 40.0% | |
| ! | CTCCATGTACTGAGTTTTCT+AGG | + | chr2_4:30538173-30538192 | Msa0324670:intron | 40.0% |
| AGCCTAGAAAACTCAGTACA+TGG | - | chr2_4:30538178-30538197 | None:intergenic | 40.0% | |
| TGCTTCTGTGTTTGTTTGAG+TGG | + | chr2_4:30538361-30538380 | Msa0324670:intron | 40.0% | |
| TTTAGGTCAATTCCAGCATC+TGG | + | chr2_4:30538471-30538490 | Msa0324670:intron | 40.0% | |
| TGATGGAATACCTGCAGAAA+AGG | + | chr2_4:30538560-30538579 | Msa0324670:CDS | 40.0% | |
| ATTTCGATCGTGTCGTAACA+TGG | - | chr2_4:30538625-30538644 | None:intergenic | 40.0% | |
| CTTCTTCGTTTCACTAGACT+TGG | - | chr2_4:30538709-30538728 | None:intergenic | 40.0% | |
| ATGGAACTCTTTGCAGGAAA+GGG | - | chr2_4:30538831-30538850 | None:intergenic | 40.0% | |
| AACAAAGGTAGCTGACAACA+TGG | + | chr2_4:30539173-30539192 | Msa0324670:CDS | 40.0% | |
| GACAACATGGAGAACAACTT+CGG | + | chr2_4:30539186-30539205 | Msa0324670:CDS | 40.0% | |
| TCCTTCATTGAAACCGAATC+TGG | - | chr2_4:30539225-30539244 | None:intergenic | 40.0% | |
| CAAGATGCAGCAGATATAGT+TGG | - | chr2_4:30539267-30539286 | None:intergenic | 40.0% | |
| CTAGCACCATCAACAGCAAT+AGG | - | chr2_4:30535892-30535911 | None:intergenic | 45.0% | |
| GACAGAAAGGTCAACCATGA+AGG | - | chr2_4:30537141-30537160 | None:intergenic | 45.0% | |
| TTGCAGAGGTTAGATCCCAA+TGG | - | chr2_4:30537386-30537405 | None:intergenic | 45.0% | |
| CCTTAATCATGGTCGTGTTG+CGG | + | chr2_4:30537735-30537754 | Msa0324670:intron | 45.0% | |
| GCCTTAGCGACATGAATTCA+AGG | + | chr2_4:30537872-30537891 | Msa0324670:intron | 45.0% | |
| GCCTTGAATTCATGTCGCTA+AGG | - | chr2_4:30537876-30537895 | None:intergenic | 45.0% | |
| ATGAATTCAAGGCCATTCGC+TGG | + | chr2_4:30537883-30537902 | Msa0324670:intron | 45.0% | |
| ACTGGATTCATTCCAGATGC+TGG | - | chr2_4:30538486-30538505 | None:intergenic | 45.0% | |
| ! | CATAGAGCTACCTTTTCTGC+AGG | - | chr2_4:30538573-30538592 | None:intergenic | 45.0% |
| TGAAGGAACAGGTGAAGGAA+CGG | - | chr2_4:30538754-30538773 | None:intergenic | 45.0% | |
| TTCCTTCACCTGTTCCTTCA+AGG | + | chr2_4:30538754-30538773 | Msa0324670:CDS | 45.0% | |
| GATGGAACTCTTTGCAGGAA+AGG | - | chr2_4:30538832-30538851 | None:intergenic | 45.0% | |
| AGTGAATGTCTGCGTGCTAT+TGG | - | chr2_4:30538993-30539012 | None:intergenic | 45.0% | |
| !!! | GTTTTTGGCGAGGAAGGATA+TGG | - | chr2_4:30539156-30539175 | None:intergenic | 45.0% |
| TCCTTCCTCGCCAAAAACAA+AGG | + | chr2_4:30539158-30539177 | Msa0324670:CDS | 45.0% | |
| !!! | ACCTTTGTTTTTGGCGAGGA+AGG | - | chr2_4:30539162-30539181 | None:intergenic | 45.0% |
| !!! | AGCTACCTTTGTTTTTGGCG+AGG | - | chr2_4:30539166-30539185 | None:intergenic | 45.0% |
| TGCTGACAATTCGCCAGATT+CGG | + | chr2_4:30539209-30539228 | Msa0324670:CDS | 45.0% | |
| ! | GCCAGATTCGGTTTCAATGA+AGG | + | chr2_4:30539221-30539240 | Msa0324670:CDS | 45.0% |
| GGTTTCAATGAAGGAACCAC+AGG | + | chr2_4:30539230-30539249 | Msa0324670:CDS | 45.0% | |
| TTCAATGAAGGAACCACAGG+AGG | + | chr2_4:30539233-30539252 | Msa0324670:CDS | 45.0% | |
| TACTTTGTGTTCTCTCGGCA+AGG | + | chr2_4:30539310-30539329 | Msa0324670:three_prime_UTR | 45.0% | |
| ACTTTGTGTTCTCTCGGCAA+GGG | + | chr2_4:30539311-30539330 | Msa0324670:three_prime_UTR | 45.0% | |
| ACTTCGAAGTTGCATCTCTC+TGG | + | chr2_4:30539438-30539457 | Msa0324670:three_prime_UTR | 45.0% | |
| ! | TGATGGTGCTAGCTCCAACA+TGG | + | chr2_4:30535900-30535919 | Msa0324670:CDS | 50.0% |
| TGCTAGCTCCAACATGGTTG+AGG | + | chr2_4:30535906-30535925 | Msa0324670:CDS | 50.0% | |
| GCTAGCTCCAACATGGTTGA+GGG | + | chr2_4:30535907-30535926 | Msa0324670:CDS | 50.0% | |
| CTAGCTCCAACATGGTTGAG+GGG | + | chr2_4:30535908-30535927 | Msa0324670:CDS | 50.0% | |
| CATTGACCCCTCAACCATGT+TGG | - | chr2_4:30535917-30535936 | None:intergenic | 50.0% | |
| TGTTGAGGAGAAAAGCAGGG+TGG | - | chr2_4:30536461-30536480 | None:intergenic | 50.0% | |
| GGCTCATTGTCACCGATAAG+TGG | + | chr2_4:30536532-30536551 | Msa0324670:intron | 50.0% | |
| CTGCTGATGGCAGATTATGG+CGG | - | chr2_4:30537276-30537295 | None:intergenic | 50.0% | |
| CCGCAACACGACCATGATTA+AGG | - | chr2_4:30537738-30537757 | None:intergenic | 50.0% | |
| ACAGGTGAAGGAACGGGAAT+GGG | - | chr2_4:30538747-30538766 | None:intergenic | 50.0% | |
| AACAGGTGAAGGAACGGGAA+TGG | - | chr2_4:30538748-30538767 | None:intergenic | 50.0% | |
| GAAGGAACAGGTGAAGGAAC+GGG | - | chr2_4:30538753-30538772 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTGAAGGAAC+AGG | - | chr2_4:30538765-30538784 | None:intergenic | 50.0% | |
| CTGCAGATGGAACTCTTTGC+AGG | - | chr2_4:30538837-30538856 | None:intergenic | 50.0% | |
| CTGCAAAGAGTTCCATCTGC+AGG | + | chr2_4:30538835-30538854 | Msa0324670:CDS | 50.0% | |
| AGTTCCATCTGCAGGCTACA+AGG | + | chr2_4:30538843-30538862 | Msa0324670:CDS | 50.0% | |
| !! | TTCTTCAGAAGCGTCGAGAC+AGG | + | chr2_4:30539021-30539040 | Msa0324670:CDS | 50.0% |
| GTTGGCTGAAATTCCTCCTG+TGG | - | chr2_4:30539249-30539268 | None:intergenic | 50.0% | |
| GGCCTTGAAGGAACAGGTGA+AGG | - | chr2_4:30538759-30538778 | None:intergenic | 55.0% | |
| TGTGGCGAAGAAGGCCTTGA+AGG | - | chr2_4:30538771-30538790 | None:intergenic | 55.0% | |
| TCAAGGCCTTCTTCGCCACA+TGG | + | chr2_4:30538771-30538790 | Msa0324670:CDS | 55.0% | |
| GCAGTTCCATGTGGCGAAGA+AGG | - | chr2_4:30538780-30538799 | None:intergenic | 55.0% | |
| CACACCTTGTAGCCTGCAGA+TGG | - | chr2_4:30538850-30538869 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 30535617 | 30539682 | 30535617 | ID=Msa0324670;Name=Msa0324670 |
| chr2_4 | mRNA | 30535617 | 30539682 | 30535617 | ID=Msa0324670-mRNA-1;Parent=Msa0324670;Name=Msa0324670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=215|1|1|1|1|1|5|395|210 |
| chr2_4 | exon | 30535617 | 30535956 | 30535617 | ID=Msa0324670-mRNA-1:exon:10228;Parent=Msa0324670-mRNA-1 |
| chr2_4 | exon | 30538476 | 30538581 | 30538476 | ID=Msa0324670-mRNA-1:exon:10229;Parent=Msa0324670-mRNA-1 |
| chr2_4 | exon | 30538672 | 30538864 | 30538672 | ID=Msa0324670-mRNA-1:exon:10230;Parent=Msa0324670-mRNA-1 |
| chr2_4 | exon | 30538985 | 30539042 | 30538985 | ID=Msa0324670-mRNA-1:exon:10231;Parent=Msa0324670-mRNA-1 |
| chr2_4 | exon | 30539137 | 30539682 | 30539137 | ID=Msa0324670-mRNA-1:exon:10232;Parent=Msa0324670-mRNA-1 |
| chr2_4 | five_prime_UTR | 30535617 | 30535831 | 30535617 | ID=Msa0324670-mRNA-1:five_prime_utr;Parent=Msa0324670-mRNA-1 |
| chr2_4 | CDS | 30535832 | 30535956 | 30535832 | ID=Msa0324670-mRNA-1:cds;Parent=Msa0324670-mRNA-1 |
| chr2_4 | CDS | 30538476 | 30538581 | 30538476 | ID=Msa0324670-mRNA-1:cds;Parent=Msa0324670-mRNA-1 |
| chr2_4 | CDS | 30538672 | 30538864 | 30538672 | ID=Msa0324670-mRNA-1:cds;Parent=Msa0324670-mRNA-1 |
| chr2_4 | CDS | 30538985 | 30539042 | 30538985 | ID=Msa0324670-mRNA-1:cds;Parent=Msa0324670-mRNA-1 |
| chr2_4 | CDS | 30539137 | 30539287 | 30539137 | ID=Msa0324670-mRNA-1:cds;Parent=Msa0324670-mRNA-1 |
| chr2_4 | three_prime_UTR | 30539288 | 30539682 | 30539288 | ID=Msa0324670-mRNA-1:three_prime_utr;Parent=Msa0324670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
