Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0324910 | AES65708.2 | 80.128 | 156 | 31 | 0 | 1 | 156 | 94 | 249 | 1.60e-76 | 239 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0324910 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0324910 | MtrunA17_Chr1g0162721 | 74.051 | 158 | 40 | 1 | 1 | 157 | 129 | 286 | 4.10e-73 | 221 |
Msa0324910 | MtrunA17_Chr2g0302481 | 62.420 | 157 | 33 | 1 | 1 | 157 | 37 | 167 | 1.81e-57 | 177 |
Msa0324910 | MtrunA17_Chr4g0065261 | 50.000 | 68 | 33 | 1 | 90 | 157 | 88 | 154 | 1.97e-13 | 64.3 |
Msa0324910 | MtrunA17_Chr8g0373571 | 46.875 | 64 | 34 | 0 | 93 | 156 | 260 | 323 | 2.16e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 29 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGGGATGGCTCAGAATT+TGG | 0.139505 | 2_4:-30928582 | Msa0324910:CDS |
GTTCCATCCTTATCATGTTT+TGG | 0.256912 | 2_4:+30929135 | None:intergenic |
CAGAGATCTAACATCATTAT+TGG | 0.268774 | 2_4:-30928765 | Msa0324910:CDS |
TCTGGGATGGCTCAGAATTT+GGG | 0.322428 | 2_4:-30928581 | Msa0324910:CDS |
GCTTAGCGATCCTTTGTGTT+AGG | 0.344325 | 2_4:+30924401 | None:intergenic |
GAACAAACTGTACCTCATTA+AGG | 0.349941 | 2_4:+30929113 | None:intergenic |
TTCTTTGTAGAAAATCCATC+TGG | 0.371434 | 2_4:-30928599 | Msa0324910:intron |
GATCTCTGCTTCATACTTGA+AGG | 0.401624 | 2_4:+30928780 | None:intergenic |
TAAAGTGAGGGACACTCTTA+AGG | 0.429488 | 2_4:-30924437 | Msa0324910:CDS |
AAGATCAAAGATAAAGAAAC+AGG | 0.437513 | 2_4:-30928297 | Msa0324910:intron |
CTGTCTGAAGTTTAATGACT+GGG | 0.477126 | 2_4:-30929191 | None:intergenic |
TTCGGCACCAAAACATGATA+AGG | 0.479829 | 2_4:-30929142 | Msa0324910:CDS |
CCTGTCTGAAGTTTAATGAC+TGG | 0.508734 | 2_4:-30929192 | None:intergenic |
TCTAACATCATTATTGGTGA+TGG | 0.535306 | 2_4:-30928759 | Msa0324910:intron |
AGCGATCCTTTGTGTTAGGA+CGG | 0.542568 | 2_4:+30924405 | None:intergenic |
GGAAGCAAGAGATCAAGAGA+TGG | 0.546485 | 2_4:-30929013 | Msa0324910:CDS |
AAATTCTGAGCCATCCCAGA+TGG | 0.581446 | 2_4:+30928584 | None:intergenic |
CTGGGATGGCTCAGAATTTG+GGG | 0.588703 | 2_4:-30928580 | Msa0324910:CDS |
CAATGAAAACGATTCTCTTG+AGG | 0.591254 | 2_4:-30924353 | None:intergenic |
TGTAGAAAATCCATCTGGGA+TGG | 0.598950 | 2_4:-30928594 | Msa0324910:intron |
ATGAAGAGCTATGTAAAGTG+AGG | 0.600340 | 2_4:-30924450 | Msa0324910:CDS |
GCACCAAAACATGATAAGGA+TGG | 0.602079 | 2_4:-30929138 | Msa0324910:CDS |
TCTTTGTAGAAAATCCATCT+GGG | 0.602431 | 2_4:-30928598 | Msa0324910:intron |
TGAAGAGCTATGTAAAGTGA+GGG | 0.610148 | 2_4:-30924449 | Msa0324910:CDS |
ATAAGGATGGAACCTTAATG+AGG | 0.637895 | 2_4:-30929125 | Msa0324910:intron |
TATGTGCGCAGTGCAGCAAG+TGG | 0.644014 | 2_4:-30929034 | Msa0324910:intron |
GAATTTGGGGACACTCGTCA+AGG | 0.650553 | 2_4:-30928567 | Msa0324910:CDS |
AAAATTCCGTCCTAACACAA+AGG | 0.666008 | 2_4:-30924411 | Msa0324910:CDS |
TGTCTGAAGTTTAATGACTG+GGG | 0.707804 | 2_4:-30929190 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTAATTTTTATATAAATG+TGG | - | chr2_4:30924574-30924593 | Msa0324910:intron | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927852-30927871 | Msa0324910:intron | 100.0% |
!!! | TTTAAAATTTTCTTTAGTAC+AGG | - | chr2_4:30924673-30924692 | Msa0324910:intron | 15.0% |
!!! | TTTGAAATGGTTATAAAAAA+TGG | + | chr2_4:30925805-30925824 | None:intergenic | 15.0% |
!!! | AAACAAAAACTATTTTAAAC+AGG | + | chr2_4:30926468-30926487 | None:intergenic | 15.0% |
!!! | TTTTGAATTTTTTAGTTTTG+AGG | + | chr2_4:30926559-30926578 | None:intergenic | 15.0% |
!!! | TATTTTTAGAATTACAGTTT+TGG | + | chr2_4:30926588-30926607 | None:intergenic | 15.0% |
!!! | AAAAACTAAAAAAGAGTTTT+TGG | - | chr2_4:30926642-30926661 | Msa0324910:intron | 15.0% |
!!! | AAAACTAAAAAAGAGTTTTT+GGG | - | chr2_4:30926643-30926662 | Msa0324910:intron | 15.0% |
!!! | GTTGAAAAAAAAAACTTTTT+TGG | + | chr2_4:30928952-30928971 | None:intergenic | 15.0% |
!! | TATTAAATAACATTAGAGTA+AGG | + | chr2_4:30928976-30928995 | None:intergenic | 15.0% |
!!! | TTTTCATAGCTAAATATGTA+TGG | - | chr2_4:30925051-30925070 | Msa0324910:intron | 20.0% |
!! | CAACATTTATACATAGAAAA+TGG | - | chr2_4:30925285-30925304 | Msa0324910:intron | 20.0% |
!! | TTTATACATAGAAAATGGTT+TGG | - | chr2_4:30925290-30925309 | Msa0324910:intron | 20.0% |
!! | ATGATTTCACAAAATGTTTA+GGG | + | chr2_4:30925453-30925472 | None:intergenic | 20.0% |
!! | AATGATTTCACAAAATGTTT+AGG | + | chr2_4:30925454-30925473 | None:intergenic | 20.0% |
!!! | AAACATTTTGTGAAATCATT+TGG | - | chr2_4:30925454-30925473 | Msa0324910:intron | 20.0% |
!! | ATCAAACAACAAATATAGAT+AGG | + | chr2_4:30925540-30925559 | None:intergenic | 20.0% |
!! | TTAAAAAGGATAGATATGAT+AGG | + | chr2_4:30925605-30925624 | None:intergenic | 20.0% |
!!! | TCCTTTTTAAATTTAATCCT+TGG | - | chr2_4:30925615-30925634 | Msa0324910:intron | 20.0% |
!! | ACCAAGGATTAAATTTAAAA+AGG | + | chr2_4:30925619-30925638 | None:intergenic | 20.0% |
!! | AAATAGGATATGATAACAAA+CGG | + | chr2_4:30925922-30925941 | None:intergenic | 20.0% |
!!! | AATTGAAAGGAAAATTTTAG+TGG | - | chr2_4:30926157-30926176 | Msa0324910:intron | 20.0% |
!!! | TGTTTTGTATAAAACTACAT+TGG | + | chr2_4:30926432-30926451 | None:intergenic | 20.0% |
!! | TATATTATTAGAATGCTTCA+AGG | - | chr2_4:30927331-30927350 | Msa0324910:intron | 20.0% |
!! | AAAATAAAGTCATAGTGATT+AGG | + | chr2_4:30927543-30927562 | None:intergenic | 20.0% |
!! | GAGAATAATATAGAACATTA+TGG | + | chr2_4:30927603-30927622 | None:intergenic | 20.0% |
!! | GATTTATATCAGAAGATTAA+TGG | + | chr2_4:30927707-30927726 | None:intergenic | 20.0% |
!!! | AAAATTTTTGTTCAGTCTTT+GGG | + | chr2_4:30928167-30928186 | None:intergenic | 20.0% |
!!! | AAAAATTTTTGTTCAGTCTT+TGG | + | chr2_4:30928168-30928187 | None:intergenic | 20.0% |
!! | AATAATTTGAATGTTCAGAA+TGG | - | chr2_4:30928454-30928473 | Msa0324910:intron | 20.0% |
! | TTGTTAATAGCATTTATCCA+AGG | - | chr2_4:30924458-30924477 | Msa0324910:CDS | 25.0% |
! | GTACAGGTTATATAAAATGT+CGG | - | chr2_4:30924689-30924708 | Msa0324910:intron | 25.0% |
!!! | GTCTAATTACATCCTTTTTT+TGG | - | chr2_4:30924719-30924738 | Msa0324910:intron | 25.0% |
! | CTATAATTTGAATGTTCAGA+AGG | - | chr2_4:30924852-30924871 | Msa0324910:intron | 25.0% |
! | TGATGCTCAACTAAAAAATA+TGG | - | chr2_4:30925009-30925028 | Msa0324910:intron | 25.0% |
! | AAACTTAGCAACATTAAGAA+GGG | + | chr2_4:30925100-30925119 | None:intergenic | 25.0% |
! | TAAACTTAGCAACATTAAGA+AGG | + | chr2_4:30925101-30925120 | None:intergenic | 25.0% |
! | CAAAAGAAATGCTACTAAAT+AGG | + | chr2_4:30925154-30925173 | None:intergenic | 25.0% |
! | AAGATCAAAGATAAAGAAAC+AGG | - | chr2_4:30925234-30925253 | Msa0324910:intron | 25.0% |
! | TTAAAGTAATCATATCCTGT+TGG | + | chr2_4:30925566-30925585 | None:intergenic | 25.0% |
!!! | ATTTAATCCTTGGTTTTTTG+TGG | - | chr2_4:30925625-30925644 | Msa0324910:intron | 25.0% |
!!! | TTTAATCCTTGGTTTTTTGT+GGG | - | chr2_4:30925626-30925645 | Msa0324910:intron | 25.0% |
! | CTTGATAGATTTATGTTATC+AGG | + | chr2_4:30925659-30925678 | None:intergenic | 25.0% |
! | AATAGGATATGATAACAAAC+GGG | + | chr2_4:30925921-30925940 | None:intergenic | 25.0% |
! | GCACATGATATGATATAAAT+AGG | + | chr2_4:30925938-30925957 | None:intergenic | 25.0% |
! | GAATTTCTTCAATTTCTTGA+TGG | + | chr2_4:30926010-30926029 | None:intergenic | 25.0% |
! | TAAAACATCTTTACAACTTG+AGG | + | chr2_4:30926034-30926053 | None:intergenic | 25.0% |
!!! | AAAGTACTGCTTAAATTGAA+AGG | - | chr2_4:30926144-30926163 | Msa0324910:intron | 25.0% |
! | CTGAAATATAGAAGAATAAG+AGG | - | chr2_4:30926304-30926323 | Msa0324910:intron | 25.0% |
! | ATGATAACTATTGTGAAAAG+AGG | + | chr2_4:30926513-30926532 | None:intergenic | 25.0% |
! | AGATGTTGCAAACATTAATA+TGG | - | chr2_4:30926831-30926850 | Msa0324910:intron | 25.0% |
!!! | ACTTACTTTTAGACTCATTT+AGG | + | chr2_4:30926893-30926912 | None:intergenic | 25.0% |
!! | ACATATAAGAGAGTGTAAAA+TGG | + | chr2_4:30927092-30927111 | None:intergenic | 25.0% |
! | ATTTATTGTAGGAAATGGAA+AGG | + | chr2_4:30927130-30927149 | None:intergenic | 25.0% |
! | TTGTGATTTATTGTAGGAAA+TGG | + | chr2_4:30927135-30927154 | None:intergenic | 25.0% |
! | TGCATATTGTGATTTATTGT+AGG | + | chr2_4:30927141-30927160 | None:intergenic | 25.0% |
! | TTCCTAGAGTAGTATAAATA+AGG | + | chr2_4:30927396-30927415 | None:intergenic | 25.0% |
!! | TTATTTATACTACTCTAGGA+AGG | - | chr2_4:30927395-30927414 | Msa0324910:intron | 25.0% |
! | AAAAATCCATACTAACAACT+TGG | - | chr2_4:30927771-30927790 | Msa0324910:intron | 25.0% |
! | GAAATCTATCATAATTTCTG+AGG | - | chr2_4:30928367-30928386 | Msa0324910:intron | 25.0% |
!! | AAAATCTCTTTTGAATCAGT+AGG | - | chr2_4:30928701-30928720 | Msa0324910:intron | 25.0% |
TAAAAATGGAAACCAGTCTT+CGG | - | chr2_4:30924371-30924390 | Msa0324910:CDS | 30.0% | |
CTAACTTCTTAAGATAACAG+TGG | + | chr2_4:30924622-30924641 | None:intergenic | 30.0% | |
CTTAAGAAGTTAGAACACTT+AGG | - | chr2_4:30924629-30924648 | Msa0324910:intron | 30.0% | |
!!! | AATTACATCCTTTTTTTGGC+AGG | - | chr2_4:30924723-30924742 | Msa0324910:intron | 30.0% |
CAGAGATCTAACATCATTAT+TGG | - | chr2_4:30924766-30924785 | Msa0324910:intron | 30.0% | |
TCTAACATCATTATTGGTGA+TGG | - | chr2_4:30924772-30924791 | Msa0324910:intron | 30.0% | |
TTCTTTGTAGAAAATCCATC+TGG | - | chr2_4:30924932-30924951 | Msa0324910:intron | 30.0% | |
TCTTTGTAGAAAATCCATCT+GGG | - | chr2_4:30924933-30924952 | Msa0324910:intron | 30.0% | |
! | TTAGTAGCATTTCTTTTGAC+AGG | - | chr2_4:30925156-30925175 | Msa0324910:intron | 30.0% |
AAAGAAAAAGACTGTCAAAC+AGG | - | chr2_4:30925200-30925219 | Msa0324910:intron | 30.0% | |
TATCTAACTTCTGATGTGTT+TGG | - | chr2_4:30925354-30925373 | Msa0324910:intron | 30.0% | |
! | ATTTTATCTACAGAAATCCC+AGG | - | chr2_4:30925403-30925422 | Msa0324910:intron | 30.0% |
! | TTTTATCTACAGAAATCCCA+GGG | - | chr2_4:30925404-30925423 | Msa0324910:intron | 30.0% |
AAAATGTTTAGGGAAGCTAT+TGG | + | chr2_4:30925443-30925462 | None:intergenic | 30.0% | |
TGAAATCATTTGGACACTAA+GGG | - | chr2_4:30925464-30925483 | Msa0324910:intron | 30.0% | |
! | TGATAGGATTAGTACGTAAT+GGG | + | chr2_4:30925589-30925608 | None:intergenic | 30.0% |
! | ATGATAGGATTAGTACGTAA+TGG | + | chr2_4:30925590-30925609 | None:intergenic | 30.0% |
GAGTCAATAGATTTGTGATT+GGG | + | chr2_4:30925724-30925743 | None:intergenic | 30.0% | |
GAGTTGGGAAAAATTTGAAA+TGG | + | chr2_4:30925818-30925837 | None:intergenic | 30.0% | |
!! | ATATGATAACAAACGGGTTA+AGG | + | chr2_4:30925915-30925934 | None:intergenic | 30.0% |
!! | GCAGAGTTTAATAACTTGTT+TGG | + | chr2_4:30925962-30925981 | None:intergenic | 30.0% |
ATAAGCTATCGTATTCAAGT+TGG | - | chr2_4:30926078-30926097 | Msa0324910:intron | 30.0% | |
! | CACTTACTTGATTTTCGTAT+TGG | + | chr2_4:30926236-30926255 | None:intergenic | 30.0% |
CGAAAATCAAGTAAGTGTTA+TGG | - | chr2_4:30926239-30926258 | Msa0324910:intron | 30.0% | |
AGAATAAGAGGTCAAAAGAT+AGG | - | chr2_4:30926316-30926335 | Msa0324910:intron | 30.0% | |
GAATAAGAGGTCAAAAGATA+GGG | - | chr2_4:30926317-30926336 | Msa0324910:intron | 30.0% | |
TGTCTATCAAAAATGGTTCA+GGG | - | chr2_4:30927013-30927032 | Msa0324910:intron | 30.0% | |
TACACTCTCTTATATGTACA+CGG | - | chr2_4:30927095-30927114 | Msa0324910:intron | 30.0% | |
TGCATTTATAAGATCTCAAC+TGG | - | chr2_4:30927246-30927265 | Msa0324910:intron | 30.0% | |
!! | AGCCTTATTTATACTACTCT+AGG | - | chr2_4:30927391-30927410 | Msa0324910:intron | 30.0% |
ACTTTGATCTCAACAATAGA+AGG | + | chr2_4:30927741-30927760 | None:intergenic | 30.0% | |
TTGAGATCAAAGTAATCCAA+GGG | - | chr2_4:30927748-30927767 | Msa0324910:intron | 30.0% | |
GTATAATTACATCCTTTCTG+TGG | - | chr2_4:30928318-30928337 | Msa0324910:CDS | 30.0% | |
GATTTCTGCTTCTTACTTAA+AGG | + | chr2_4:30928353-30928372 | None:intergenic | 30.0% | |
! | TCTATCATAATTTCTGAGGA+TGG | - | chr2_4:30928371-30928390 | Msa0324910:intron | 30.0% |
TTCTTTGTAGAAAATCCATC+TGG | - | chr2_4:30924932-30924951 | Msa0324910:intron | 30.0% | |
TCTTTGTAGAAAATCCATCT+GGG | - | chr2_4:30924933-30924952 | Msa0324910:intron | 30.0% | |
ATTCAGATTCATATTCAGAG+AGG | + | chr2_4:30928582-30928601 | None:intergenic | 30.0% | |
!! | ACTGTAGAAGTATTGCTTAT+CGG | - | chr2_4:30928859-30928878 | Msa0324910:intron | 30.0% |
!!! | AGACTGGTTTCCATTTTTAG+TGG | + | chr2_4:30924370-30924389 | None:intergenic | 35.0% |
! | GTTCCATCCTTATCATGTTT+TGG | + | chr2_4:30924399-30924418 | None:intergenic | 35.0% |
ATAAGGATGGAACCTTAATG+AGG | - | chr2_4:30924406-30924425 | Msa0324910:CDS | 35.0% | |
GAACAAACTGTACCTCATTA+AGG | + | chr2_4:30924421-30924440 | None:intergenic | 35.0% | |
! | ACAGTTTGTTCTTGTTCTTC+TGG | - | chr2_4:30924430-30924449 | Msa0324910:CDS | 35.0% |
! | GCACATAAAGGATTTTGTTC+AGG | + | chr2_4:30924484-30924503 | None:intergenic | 35.0% |
GTGAAATCATTTGGACACTA+AGG | - | chr2_4:30925463-30925482 | Msa0324910:intron | 35.0% | |
!! | TTGTTGTTTGATGTACCAAC+AGG | - | chr2_4:30925548-30925567 | Msa0324910:intron | 35.0% |
GGAGTCAATAGATTTGTGAT+TGG | + | chr2_4:30925725-30925744 | None:intergenic | 35.0% | |
GGTAGAATTGTTGCTGAAAA+TGG | + | chr2_4:30925746-30925765 | None:intergenic | 35.0% | |
ATGGTAGATATGCAGAGAAT+GGG | + | chr2_4:30925772-30925791 | None:intergenic | 35.0% | |
! | AAAAAATGGAAGCACACACA+TGG | + | chr2_4:30925791-30925810 | None:intergenic | 35.0% |
ATGGATCGTAAACAAGAGTT+GGG | + | chr2_4:30925833-30925852 | None:intergenic | 35.0% | |
TCATATCATGTGTTCGAGTA+AGG | + | chr2_4:30925860-30925879 | None:intergenic | 35.0% | |
TAAGGATATGATAGGAGAGT+GGG | + | chr2_4:30925897-30925916 | None:intergenic | 35.0% | |
TTAAGGATATGATAGGAGAG+TGG | + | chr2_4:30925898-30925917 | None:intergenic | 35.0% | |
!! | AAACGGGTTAAGGATATGAT+AGG | + | chr2_4:30925905-30925924 | None:intergenic | 35.0% |
!! | TTCAAGTTGGTTGGTTGAAA+TGG | - | chr2_4:30926091-30926110 | Msa0324910:intron | 35.0% |
CTTATTGCATAAAACACCTG+AGG | + | chr2_4:30926124-30926143 | None:intergenic | 35.0% | |
AAGTAAGTGTTATGGAGATG+AGG | - | chr2_4:30926247-30926266 | Msa0324910:intron | 35.0% | |
GGCAGAAAATGTGACAAAAT+AGG | - | chr2_4:30926338-30926357 | Msa0324910:intron | 35.0% | |
TGACTATGTGTATTGTGGAA+AGG | + | chr2_4:30926407-30926426 | None:intergenic | 35.0% | |
!!! | TTTTGGGAAGTGTTTCAAAC+AGG | - | chr2_4:30926659-30926678 | Msa0324910:intron | 35.0% |
! | TGCTTTCTAGCACAACTAAT+TGG | - | chr2_4:30926759-30926778 | Msa0324910:intron | 35.0% |
! | CTTTTTCCCGTTAATTGTCA+AGG | + | chr2_4:30926980-30926999 | None:intergenic | 35.0% |
GTGTCTATCAAAAATGGTTC+AGG | - | chr2_4:30927012-30927031 | Msa0324910:intron | 35.0% | |
GGGAGAATGATAGAGAATTA+TGG | + | chr2_4:30927625-30927644 | None:intergenic | 35.0% | |
TAATTCTCTATCATTCTCCC+CGG | - | chr2_4:30927625-30927644 | Msa0324910:intron | 35.0% | |
! | AAGAAGAATTTCTAGACTCG+AGG | + | chr2_4:30927667-30927686 | None:intergenic | 35.0% |
GTTGAGATCAAAGTAATCCA+AGG | - | chr2_4:30927747-30927766 | Msa0324910:intron | 35.0% | |
! | GTTAGTATGGATTTTTCCCT+TGG | + | chr2_4:30927767-30927786 | None:intergenic | 35.0% |
ATGTTCAGAACTAAATGCAG+CGG | - | chr2_4:30927967-30927986 | Msa0324910:intron | 35.0% | |
!! | ACAGTTTGTTCTTTTTCCTC+TGG | - | chr2_4:30928120-30928139 | Msa0324910:intron | 35.0% |
GCTATTAACAAGTTTACCAG+AGG | + | chr2_4:30924449-30924468 | None:intergenic | 35.0% | |
! | TTCTGAGGATGGTAAGATTA+TGG | - | chr2_4:30928382-30928401 | Msa0324910:intron | 35.0% |
AAGATTGTTAGCCACATGAA+CGG | + | chr2_4:30928503-30928522 | None:intergenic | 35.0% | |
CTCTCATACAAACGTGTTAT+AGG | - | chr2_4:30928760-30928779 | Msa0324910:CDS | 35.0% | |
ATAGCTCTTCATATTCTTGC+TGG | + | chr2_4:30929073-30929092 | None:intergenic | 35.0% | |
ATGAAGAGCTATGTAAAGTG+AGG | - | chr2_4:30929081-30929100 | Msa0324910:intron | 35.0% | |
TGAAGAGCTATGTAAAGTGA+GGG | - | chr2_4:30929082-30929101 | Msa0324910:intron | 35.0% | |
AAAATTCCGTCCTAACACAA+AGG | - | chr2_4:30929120-30929139 | Msa0324910:intron | 35.0% | |
! | CTCAAGAGAATCGTTTTCAT+TGG | + | chr2_4:30929180-30929199 | None:intergenic | 35.0% |
ACTGGGGAATCCACTAAAAA+TGG | - | chr2_4:30924357-30924376 | Msa0324910:CDS | 40.0% | |
TTCGGCACCAAAACATGATA+AGG | - | chr2_4:30924389-30924408 | Msa0324910:CDS | 40.0% | |
GCACCAAAACATGATAAGGA+TGG | - | chr2_4:30924393-30924412 | Msa0324910:CDS | 40.0% | |
! | AAAGGATTTTGTTCAGGCCT+TGG | + | chr2_4:30924478-30924497 | None:intergenic | 40.0% |
GATCTCTGCTTCATACTTGA+AGG | + | chr2_4:30924754-30924773 | None:intergenic | 40.0% | |
TGTAGAAAATCCATCTGGGA+TGG | - | chr2_4:30924937-30924956 | Msa0324910:intron | 40.0% | |
GGTACATACATGACCATGAT+CGG | - | chr2_4:30925255-30925274 | Msa0324910:intron | 40.0% | |
TGCTAACCCACAAAAAACCA+AGG | + | chr2_4:30925635-30925654 | None:intergenic | 40.0% | |
TGGTAGATATGCAGAGAATG+GGG | + | chr2_4:30925771-30925790 | None:intergenic | 40.0% | |
CATGGTAGATATGCAGAGAA+TGG | + | chr2_4:30925773-30925792 | None:intergenic | 40.0% | |
CATGGATCGTAAACAAGAGT+TGG | + | chr2_4:30925834-30925853 | None:intergenic | 40.0% | |
TGTGTTCGAGTAAGGAAACA+TGG | + | chr2_4:30925852-30925871 | None:intergenic | 40.0% | |
!! | GCTATCGTATTCAAGTTGGT+TGG | - | chr2_4:30926082-30926101 | Msa0324910:intron | 40.0% |
! | TTTAGTGGACAACAGTGAGA+CGG | - | chr2_4:30926172-30926191 | Msa0324910:intron | 40.0% |
TGTTGTATGGTACGAAGTGT+TGG | - | chr2_4:30926199-30926218 | Msa0324910:intron | 40.0% | |
! | GTTGTATGGTACGAAGTGTT+GGG | - | chr2_4:30926200-30926219 | Msa0324910:intron | 40.0% |
TGGCTTGACTATGTGTATTG+TGG | + | chr2_4:30926412-30926431 | None:intergenic | 40.0% | |
ACAGTATGACTTAACCTCTG+TGG | - | chr2_4:30926859-30926878 | Msa0324910:intron | 40.0% | |
CAGTATGACTTAACCTCTGT+GGG | - | chr2_4:30926860-30926879 | Msa0324910:intron | 40.0% | |
! | TTTAGGATTGTTTCCCACAG+AGG | + | chr2_4:30926876-30926895 | None:intergenic | 40.0% |
TTTCCCGTTAATTGTCAAGG+CGG | + | chr2_4:30926977-30926996 | None:intergenic | 40.0% | |
AACGGGAAAAAGAGAGTTGT+CGG | - | chr2_4:30926988-30927007 | Msa0324910:intron | 40.0% | |
GTCGGTGTGTCTATCAAAAA+TGG | - | chr2_4:30927006-30927025 | Msa0324910:intron | 40.0% | |
! | ATAAGATCTCAACTGGCTCA+CGG | - | chr2_4:30927253-30927272 | Msa0324910:intron | 40.0% |
CTTGAGTATGCCTAAACACT+TGG | - | chr2_4:30927363-30927382 | Msa0324910:intron | 40.0% | |
!! | TAGCATCTCTGGAACTTTCT+AGG | + | chr2_4:30927513-30927532 | None:intergenic | 40.0% |
TAGGATCATCTTAGCATCTC+TGG | + | chr2_4:30927524-30927543 | None:intergenic | 40.0% | |
AATTCTCTATCATTCTCCCC+GGG | - | chr2_4:30927626-30927645 | Msa0324910:intron | 40.0% | |
TCCATACTAACAACTTGGCA+AGG | - | chr2_4:30927776-30927795 | Msa0324910:intron | 40.0% | |
ATACTAACAACTTGGCAAGG+CGG | - | chr2_4:30927779-30927798 | Msa0324910:intron | 40.0% | |
GATGGGACATACATAACTGA+AGG | - | chr2_4:30927813-30927832 | Msa0324910:intron | 40.0% | |
AAGGTGAGAAAAACACGAGA+GGG | - | chr2_4:30927832-30927851 | Msa0324910:intron | 40.0% | |
! | CTGATCAGTGTTTTCAGCTT+AGG | + | chr2_4:30927919-30927938 | None:intergenic | 40.0% |
! | GTTCCATCCCTAGCATTTTT+CGG | + | chr2_4:30928089-30928108 | None:intergenic | 40.0% |
GAACAAACTGTACCTCATTG+AGG | + | chr2_4:30928111-30928130 | None:intergenic | 40.0% | |
AATTACATCCTTTCTGTGGC+AGG | - | chr2_4:30928322-30928341 | Msa0324910:CDS | 40.0% | |
! | TGACTCTGACGCTGAATTTT+GGG | - | chr2_4:30928603-30928622 | Msa0324910:intron | 40.0% |
CTATAGCTGCTAGCATATCA+CGG | + | chr2_4:30928835-30928854 | None:intergenic | 40.0% | |
TCTTCATATTCTTGCTGGCA+AGG | + | chr2_4:30929068-30929087 | None:intergenic | 40.0% | |
TAAAGTGAGGGACACTCTTA+AGG | - | chr2_4:30929094-30929113 | Msa0324910:intron | 40.0% | |
GGAAGCAAGAGATCAAGAGA+TGG | - | chr2_4:30924518-30924537 | Msa0324910:intron | 45.0% | |
AGGAGAGTCCTGCCAAAAAA+AGG | + | chr2_4:30924734-30924753 | None:intergenic | 45.0% | |
AAATTCTGAGCCATCCCAGA+TGG | + | chr2_4:30924950-30924969 | None:intergenic | 45.0% | |
! | ATCTGGGATGGCTCAGAATT+TGG | - | chr2_4:30924949-30924968 | Msa0324910:intron | 45.0% |
! | TCTGGGATGGCTCAGAATTT+GGG | - | chr2_4:30924950-30924969 | Msa0324910:intron | 45.0% |
! | ATGTTGCAATGCACCGATCA+TGG | + | chr2_4:30925271-30925290 | None:intergenic | 45.0% |
TGGATTCAAATCCAGACCCT+GGG | + | chr2_4:30925423-30925442 | None:intergenic | 45.0% | |
TTGGATTCAAATCCAGACCC+TGG | + | chr2_4:30925424-30925443 | None:intergenic | 45.0% | |
TCTCTATCTTGCGCACCAAA+CGG | + | chr2_4:30925491-30925510 | None:intergenic | 45.0% | |
GTGCGCAAGATAGAGAGATA+GGG | - | chr2_4:30925495-30925514 | Msa0324910:intron | 45.0% | |
AGATATGCAGAGAATGGGGT+CGG | + | chr2_4:30925767-30925786 | None:intergenic | 45.0% | |
GTGAGACGGACAATGTTGTA+TGG | - | chr2_4:30926186-30926205 | Msa0324910:intron | 45.0% | |
! | AAGAGGCATAACACTGCATC+TGG | + | chr2_4:30926374-30926393 | None:intergenic | 45.0% |
GACTGTAGTAGGCATACGTT+TGG | + | chr2_4:30926916-30926935 | None:intergenic | 45.0% | |
CGCAAACTCAAGACTGTAGT+AGG | + | chr2_4:30926927-30926946 | None:intergenic | 45.0% | |
ACTACAGTCTTGAGTTTGCG+AGG | - | chr2_4:30926927-30926946 | Msa0324910:intron | 45.0% | |
GAAGCCGCCTTGACAATTAA+CGG | - | chr2_4:30926970-30926989 | Msa0324910:intron | 45.0% | |
AAGCCGCCTTGACAATTAAC+GGG | - | chr2_4:30926971-30926990 | Msa0324910:intron | 45.0% | |
AAATGGTTCAGGGTTGCGTT+TGG | - | chr2_4:30927023-30927042 | Msa0324910:intron | 45.0% | |
!!! | TCAGGGTTGCGTTTGGTTTT+TGG | - | chr2_4:30927030-30927049 | Msa0324910:intron | 45.0% |
GAGTATGCCTAAACACTTGG+TGG | - | chr2_4:30927366-30927385 | Msa0324910:intron | 45.0% | |
GCCTTGCCAAGTTGTTAGTA+TGG | + | chr2_4:30927780-30927799 | None:intergenic | 45.0% | |
GAAGGTGAGAAAAACACGAG+AGG | - | chr2_4:30927831-30927850 | Msa0324910:intron | 45.0% | |
AGGTGAGAAAAACACGAGAG+GGG | - | chr2_4:30927833-30927852 | Msa0324910:intron | 45.0% | |
TGCTGCACCGAAAAATGCTA+GGG | - | chr2_4:30928079-30928098 | Msa0324910:intron | 45.0% | |
CGAAGCAAGAGATCAACAGA+TGG | - | chr2_4:30928208-30928227 | Msa0324910:intron | 45.0% | |
GAACGGTAGTTCATGGTGTT+TGG | + | chr2_4:30928486-30928505 | None:intergenic | 45.0% | |
ACCATGAACTACCGTTCATG+TGG | - | chr2_4:30928489-30928508 | Msa0324910:intron | 45.0% | |
TGTAGAAAATCCATCTGGGC+TGG | - | chr2_4:30928537-30928556 | Msa0324910:CDS | 45.0% | |
! | CTGACTCTGACGCTGAATTT+TGG | - | chr2_4:30928602-30928621 | Msa0324910:intron | 45.0% |
CAGTAGGATGTGCACATACT+TGG | - | chr2_4:30928717-30928736 | Msa0324910:intron | 45.0% | |
AGCGATCCTTTGTGTTAGGA+CGG | + | chr2_4:30929129-30929148 | None:intergenic | 45.0% | |
GCTTAGCGATCCTTTGTGTT+AGG | + | chr2_4:30929133-30929152 | None:intergenic | 45.0% | |
!!! | ATGTTTTAAAATAAAATAAA+AGG | - | chr2_4:30926046-30926065 | Msa0324910:intron | 5.0% |
!!! | TGTTTTAAAATAAAATAAAA+GGG | - | chr2_4:30926047-30926066 | Msa0324910:intron | 5.0% |
!!! | AAAGTTTTTTTTTTTTTTTT+TGG | - | chr2_4:30928663-30928682 | Msa0324910:intron | 5.0% |
!! | TTTGTTTAAAAAATTTATTA+GGG | + | chr2_4:30928802-30928821 | None:intergenic | 5.0% |
!! | ATTTGTTTAAAAAATTTATT+AGG | + | chr2_4:30928803-30928822 | None:intergenic | 5.0% |
!!! | CATGTTTTGGTGCCGAAGAC+TGG | + | chr2_4:30924386-30924405 | None:intergenic | 50.0% |
TTGCTGCACTGCGCACATAA+AGG | + | chr2_4:30924496-30924515 | None:intergenic | 50.0% | |
CACATGAACTGCAGTTCACG+TGG | - | chr2_4:30924889-30924908 | Msa0324910:intron | 50.0% | |
CTGGGATGGCTCAGAATTTG+GGG | - | chr2_4:30924951-30924970 | Msa0324910:intron | 50.0% | |
GAATTTGGGGACACTCGTCA+AGG | - | chr2_4:30924964-30924983 | Msa0324910:intron | 50.0% | |
TCTACAGAAATCCCAGGGTC+TGG | - | chr2_4:30925409-30925428 | Msa0324910:intron | 50.0% | |
CTCTATCTTGCGCACCAAAC+GGG | + | chr2_4:30925490-30925509 | None:intergenic | 50.0% | |
GGTGCGCAAGATAGAGAGAT+AGG | - | chr2_4:30925494-30925513 | Msa0324910:intron | 50.0% | |
TCGAAGGAGGTTGAAGGGTA+AGG | + | chr2_4:30925695-30925714 | None:intergenic | 50.0% | |
GTGAGTCGAAGGAGGTTGAA+GGG | + | chr2_4:30925700-30925719 | None:intergenic | 50.0% | |
TGTGAGTCGAAGGAGGTTGA+AGG | + | chr2_4:30925701-30925720 | None:intergenic | 50.0% | |
TGTGATTGGGTGTGAGTCGA+AGG | + | chr2_4:30925711-30925730 | None:intergenic | 50.0% | |
!! | TTGAAATGGAGAAGCGCCTC+AGG | - | chr2_4:30926105-30926124 | Msa0324910:intron | 50.0% |
!! | GTATGGTACGAAGTGTTGGG+CGG | - | chr2_4:30926203-30926222 | Msa0324910:intron | 50.0% |
TGGAGATGAGGATGTTGCGT+TGG | - | chr2_4:30926259-30926278 | Msa0324910:intron | 50.0% | |
GGAAAGGCTGTGAACTGAAG+AGG | + | chr2_4:30926391-30926410 | None:intergenic | 50.0% | |
ATCTATCCGTTGTGCGAAGC+AGG | - | chr2_4:30926798-30926817 | Msa0324910:intron | 50.0% | |
CAGTAACCTGCTTCGCACAA+CGG | + | chr2_4:30926807-30926826 | None:intergenic | 50.0% | |
! | TCAACTGGCTCACGGACAAA+AGG | - | chr2_4:30927261-30927280 | Msa0324910:intron | 50.0% |
TGGCTCACGGACAAAAGGAA+AGG | - | chr2_4:30927266-30927285 | Msa0324910:intron | 50.0% | |
AGGCTCACCACCAAGTGTTT+AGG | + | chr2_4:30927376-30927395 | None:intergenic | 50.0% | |
AAGGCGGCTTAGGAATTGGA+TGG | - | chr2_4:30927795-30927814 | Msa0324910:intron | 50.0% | |
AGGCGGCTTAGGAATTGGAT+GGG | - | chr2_4:30927796-30927815 | Msa0324910:intron | 50.0% | |
GGTGAGAAAAACACGAGAGG+GGG | - | chr2_4:30927834-30927853 | Msa0324910:intron | 50.0% | |
GTGAGAAAAACACGAGAGGG+GGG | - | chr2_4:30927835-30927854 | Msa0324910:intron | 50.0% | |
TGAGAAAAACACGAGAGGGG+GGG | - | chr2_4:30927836-30927855 | Msa0324910:intron | 50.0% | |
!! | CATTTTTCGGTGCAGCAGAC+TGG | + | chr2_4:30928076-30928095 | None:intergenic | 50.0% |
CTGCTGCACCGAAAAATGCT+AGG | - | chr2_4:30928078-30928097 | Msa0324910:intron | 50.0% | |
GCACCGAAAAATGCTAGGGA+TGG | - | chr2_4:30928083-30928102 | Msa0324910:intron | 50.0% | |
CTAGGGATGGAACCTCAATG+AGG | - | chr2_4:30928096-30928115 | Msa0324910:intron | 50.0% | |
AGGAGAATCCTGCCACAGAA+AGG | + | chr2_4:30928333-30928352 | None:intergenic | 50.0% | |
GCCACATGAACGGTAGTTCA+TGG | + | chr2_4:30928493-30928512 | None:intergenic | 50.0% | |
AAATTCTGAGCCAGCCCAGA+TGG | + | chr2_4:30928550-30928569 | None:intergenic | 50.0% | |
!! | TCTGGGCTGGCTCAGAATTT+AGG | - | chr2_4:30928550-30928569 | Msa0324910:CDS | 50.0% |
!! | CTGGGCTGGCTCAGAATTTA+GGG | - | chr2_4:30928551-30928570 | Msa0324910:CDS | 50.0% |
TATGTGCGCAGTGCAGCAAG+TGG | - | chr2_4:30924497-30924516 | Msa0324910:intron | 55.0% | |
TTGGACACTAAGGGCCCGTT+TGG | - | chr2_4:30925473-30925492 | Msa0324910:intron | 55.0% | |
GATTGGGTGTGAGTCGAAGG+AGG | + | chr2_4:30925708-30925727 | None:intergenic | 55.0% | |
CTCTATCATTCTCCCCGGGT+TGG | - | chr2_4:30927630-30927649 | Msa0324910:intron | 55.0% | |
AGGACGAGTCTCTTCCAACC+CGG | + | chr2_4:30927647-30927666 | None:intergenic | 55.0% | |
ACAACTTGGCAAGGCGGCTT+AGG | - | chr2_4:30927785-30927804 | Msa0324910:intron | 55.0% | |
TGGCAAGGCGGCTTAGGAAT+TGG | - | chr2_4:30927791-30927810 | Msa0324910:intron | 55.0% | |
GAGAAAAACACGAGAGGGGG+GGG | - | chr2_4:30927837-30927856 | Msa0324910:intron | 55.0% | |
AGAAAAACACGAGAGGGGGG+GGG | - | chr2_4:30927838-30927857 | Msa0324910:intron | 55.0% | |
GACGAGTCTCTTCCAACCCG+GGG | + | chr2_4:30927645-30927664 | None:intergenic | 60.0% | |
GGACGAGTCTCTTCCAACCC+GGG | + | chr2_4:30927646-30927665 | None:intergenic | 60.0% | |
GAAAAACACGAGAGGGGGGG+GGG | - | chr2_4:30927839-30927858 | Msa0324910:intron | 60.0% | |
AAAAACACGAGAGGGGGGGG+GGG | - | chr2_4:30927840-30927859 | Msa0324910:intron | 60.0% | |
AAAACACGAGAGGGGGGGGG+GGG | - | chr2_4:30927841-30927860 | Msa0324910:intron | 65.0% | |
AAACACGAGAGGGGGGGGGG+GGG | - | chr2_4:30927842-30927861 | Msa0324910:intron | 70.0% | |
AACACGAGAGGGGGGGGGGG+GGG | - | chr2_4:30927843-30927862 | Msa0324910:intron | 75.0% | |
! | ACACGAGAGGGGGGGGGGGG+GGG | - | chr2_4:30927844-30927863 | Msa0324910:intron | 80.0% |
! | CACGAGAGGGGGGGGGGGGG+GGG | - | chr2_4:30927845-30927864 | Msa0324910:intron | 85.0% |
! | ACGAGAGGGGGGGGGGGGGG+GGG | - | chr2_4:30927846-30927865 | Msa0324910:intron | 85.0% |
! | CGAGAGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927847-30927866 | Msa0324910:intron | 90.0% |
! | GAGAGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927848-30927867 | Msa0324910:intron | 90.0% |
! | AGAGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927849-30927868 | Msa0324910:intron | 90.0% |
! | GAGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927850-30927869 | Msa0324910:intron | 95.0% |
! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr2_4:30927851-30927870 | Msa0324910:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 30924354 | 30929199 | 30924354 | ID=Msa0324910;Name=Msa0324910 |
chr2_4 | mRNA | 30924354 | 30929199 | 30924354 | ID=Msa0324910-mRNA-1;Parent=Msa0324910;Name=Msa0324910-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0.6|0.66|6|0|157 |
chr2_4 | exon | 30929126 | 30929199 | 30929126 | ID=Msa0324910-mRNA-1:exon:10380;Parent=Msa0324910-mRNA-1 |
chr2_4 | exon | 30928991 | 30929045 | 30928991 | ID=Msa0324910-mRNA-1:exon:10379;Parent=Msa0324910-mRNA-1 |
chr2_4 | exon | 30928760 | 30928808 | 30928760 | ID=Msa0324910-mRNA-1:exon:10378;Parent=Msa0324910-mRNA-1 |
chr2_4 | exon | 30928523 | 30928611 | 30928523 | ID=Msa0324910-mRNA-1:exon:10377;Parent=Msa0324910-mRNA-1 |
chr2_4 | exon | 30928298 | 30928375 | 30928298 | ID=Msa0324910-mRNA-1:exon:10376;Parent=Msa0324910-mRNA-1 |
chr2_4 | exon | 30924354 | 30924479 | 30924354 | ID=Msa0324910-mRNA-1:exon:10375;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30929126 | 30929199 | 30929126 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30928991 | 30929045 | 30928991 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30928760 | 30928808 | 30928760 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30928523 | 30928611 | 30928523 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30928298 | 30928375 | 30928298 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
chr2_4 | CDS | 30924354 | 30924479 | 30924354 | ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1 |
Gene Sequence |
Protein sequence |