AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0324910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324910 MtrunA17_Chr1g0162721 74.051 158 40 1 1 157 129 286 4.10e-73 221
Msa0324910 MtrunA17_Chr2g0302481 62.420 157 33 1 1 157 37 167 1.81e-57 177
Msa0324910 MtrunA17_Chr4g0065261 50.000 68 33 1 90 157 88 154 1.97e-13 64.3
Msa0324910 MtrunA17_Chr8g0373571 46.875 64 34 0 93 156 260 323 2.16e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 29 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGGGATGGCTCAGAATT+TGG 0.139505 2_4:-30928582 Msa0324910:CDS
GTTCCATCCTTATCATGTTT+TGG 0.256912 2_4:+30929135 None:intergenic
CAGAGATCTAACATCATTAT+TGG 0.268774 2_4:-30928765 Msa0324910:CDS
TCTGGGATGGCTCAGAATTT+GGG 0.322428 2_4:-30928581 Msa0324910:CDS
GCTTAGCGATCCTTTGTGTT+AGG 0.344325 2_4:+30924401 None:intergenic
GAACAAACTGTACCTCATTA+AGG 0.349941 2_4:+30929113 None:intergenic
TTCTTTGTAGAAAATCCATC+TGG 0.371434 2_4:-30928599 Msa0324910:intron
GATCTCTGCTTCATACTTGA+AGG 0.401624 2_4:+30928780 None:intergenic
TAAAGTGAGGGACACTCTTA+AGG 0.429488 2_4:-30924437 Msa0324910:CDS
AAGATCAAAGATAAAGAAAC+AGG 0.437513 2_4:-30928297 Msa0324910:intron
CTGTCTGAAGTTTAATGACT+GGG 0.477126 2_4:-30929191 None:intergenic
TTCGGCACCAAAACATGATA+AGG 0.479829 2_4:-30929142 Msa0324910:CDS
CCTGTCTGAAGTTTAATGAC+TGG 0.508734 2_4:-30929192 None:intergenic
TCTAACATCATTATTGGTGA+TGG 0.535306 2_4:-30928759 Msa0324910:intron
AGCGATCCTTTGTGTTAGGA+CGG 0.542568 2_4:+30924405 None:intergenic
GGAAGCAAGAGATCAAGAGA+TGG 0.546485 2_4:-30929013 Msa0324910:CDS
AAATTCTGAGCCATCCCAGA+TGG 0.581446 2_4:+30928584 None:intergenic
CTGGGATGGCTCAGAATTTG+GGG 0.588703 2_4:-30928580 Msa0324910:CDS
CAATGAAAACGATTCTCTTG+AGG 0.591254 2_4:-30924353 None:intergenic
TGTAGAAAATCCATCTGGGA+TGG 0.598950 2_4:-30928594 Msa0324910:intron
ATGAAGAGCTATGTAAAGTG+AGG 0.600340 2_4:-30924450 Msa0324910:CDS
GCACCAAAACATGATAAGGA+TGG 0.602079 2_4:-30929138 Msa0324910:CDS
TCTTTGTAGAAAATCCATCT+GGG 0.602431 2_4:-30928598 Msa0324910:intron
TGAAGAGCTATGTAAAGTGA+GGG 0.610148 2_4:-30924449 Msa0324910:CDS
ATAAGGATGGAACCTTAATG+AGG 0.637895 2_4:-30929125 Msa0324910:intron
TATGTGCGCAGTGCAGCAAG+TGG 0.644014 2_4:-30929034 Msa0324910:intron
GAATTTGGGGACACTCGTCA+AGG 0.650553 2_4:-30928567 Msa0324910:CDS
AAAATTCCGTCCTAACACAA+AGG 0.666008 2_4:-30924411 Msa0324910:CDS
TGTCTGAAGTTTAATGACTG+GGG 0.707804 2_4:-30929190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTTTATATAAATG+TGG - chr2_4:30924574-30924593 Msa0324910:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927852-30927871 Msa0324910:intron 100.0%
!!! TTTAAAATTTTCTTTAGTAC+AGG - chr2_4:30924673-30924692 Msa0324910:intron 15.0%
!!! TTTGAAATGGTTATAAAAAA+TGG + chr2_4:30925805-30925824 None:intergenic 15.0%
!!! AAACAAAAACTATTTTAAAC+AGG + chr2_4:30926468-30926487 None:intergenic 15.0%
!!! TTTTGAATTTTTTAGTTTTG+AGG + chr2_4:30926559-30926578 None:intergenic 15.0%
!!! TATTTTTAGAATTACAGTTT+TGG + chr2_4:30926588-30926607 None:intergenic 15.0%
!!! AAAAACTAAAAAAGAGTTTT+TGG - chr2_4:30926642-30926661 Msa0324910:intron 15.0%
!!! AAAACTAAAAAAGAGTTTTT+GGG - chr2_4:30926643-30926662 Msa0324910:intron 15.0%
!!! GTTGAAAAAAAAAACTTTTT+TGG + chr2_4:30928952-30928971 None:intergenic 15.0%
!! TATTAAATAACATTAGAGTA+AGG + chr2_4:30928976-30928995 None:intergenic 15.0%
!!! TTTTCATAGCTAAATATGTA+TGG - chr2_4:30925051-30925070 Msa0324910:intron 20.0%
!! CAACATTTATACATAGAAAA+TGG - chr2_4:30925285-30925304 Msa0324910:intron 20.0%
!! TTTATACATAGAAAATGGTT+TGG - chr2_4:30925290-30925309 Msa0324910:intron 20.0%
!! ATGATTTCACAAAATGTTTA+GGG + chr2_4:30925453-30925472 None:intergenic 20.0%
!! AATGATTTCACAAAATGTTT+AGG + chr2_4:30925454-30925473 None:intergenic 20.0%
!!! AAACATTTTGTGAAATCATT+TGG - chr2_4:30925454-30925473 Msa0324910:intron 20.0%
!! ATCAAACAACAAATATAGAT+AGG + chr2_4:30925540-30925559 None:intergenic 20.0%
!! TTAAAAAGGATAGATATGAT+AGG + chr2_4:30925605-30925624 None:intergenic 20.0%
!!! TCCTTTTTAAATTTAATCCT+TGG - chr2_4:30925615-30925634 Msa0324910:intron 20.0%
!! ACCAAGGATTAAATTTAAAA+AGG + chr2_4:30925619-30925638 None:intergenic 20.0%
!! AAATAGGATATGATAACAAA+CGG + chr2_4:30925922-30925941 None:intergenic 20.0%
!!! AATTGAAAGGAAAATTTTAG+TGG - chr2_4:30926157-30926176 Msa0324910:intron 20.0%
!!! TGTTTTGTATAAAACTACAT+TGG + chr2_4:30926432-30926451 None:intergenic 20.0%
!! TATATTATTAGAATGCTTCA+AGG - chr2_4:30927331-30927350 Msa0324910:intron 20.0%
!! AAAATAAAGTCATAGTGATT+AGG + chr2_4:30927543-30927562 None:intergenic 20.0%
!! GAGAATAATATAGAACATTA+TGG + chr2_4:30927603-30927622 None:intergenic 20.0%
!! GATTTATATCAGAAGATTAA+TGG + chr2_4:30927707-30927726 None:intergenic 20.0%
!!! AAAATTTTTGTTCAGTCTTT+GGG + chr2_4:30928167-30928186 None:intergenic 20.0%
!!! AAAAATTTTTGTTCAGTCTT+TGG + chr2_4:30928168-30928187 None:intergenic 20.0%
!! AATAATTTGAATGTTCAGAA+TGG - chr2_4:30928454-30928473 Msa0324910:intron 20.0%
! TTGTTAATAGCATTTATCCA+AGG - chr2_4:30924458-30924477 Msa0324910:CDS 25.0%
! GTACAGGTTATATAAAATGT+CGG - chr2_4:30924689-30924708 Msa0324910:intron 25.0%
!!! GTCTAATTACATCCTTTTTT+TGG - chr2_4:30924719-30924738 Msa0324910:intron 25.0%
! CTATAATTTGAATGTTCAGA+AGG - chr2_4:30924852-30924871 Msa0324910:intron 25.0%
! TGATGCTCAACTAAAAAATA+TGG - chr2_4:30925009-30925028 Msa0324910:intron 25.0%
! AAACTTAGCAACATTAAGAA+GGG + chr2_4:30925100-30925119 None:intergenic 25.0%
! TAAACTTAGCAACATTAAGA+AGG + chr2_4:30925101-30925120 None:intergenic 25.0%
! CAAAAGAAATGCTACTAAAT+AGG + chr2_4:30925154-30925173 None:intergenic 25.0%
! AAGATCAAAGATAAAGAAAC+AGG - chr2_4:30925234-30925253 Msa0324910:intron 25.0%
! TTAAAGTAATCATATCCTGT+TGG + chr2_4:30925566-30925585 None:intergenic 25.0%
!!! ATTTAATCCTTGGTTTTTTG+TGG - chr2_4:30925625-30925644 Msa0324910:intron 25.0%
!!! TTTAATCCTTGGTTTTTTGT+GGG - chr2_4:30925626-30925645 Msa0324910:intron 25.0%
! CTTGATAGATTTATGTTATC+AGG + chr2_4:30925659-30925678 None:intergenic 25.0%
! AATAGGATATGATAACAAAC+GGG + chr2_4:30925921-30925940 None:intergenic 25.0%
! GCACATGATATGATATAAAT+AGG + chr2_4:30925938-30925957 None:intergenic 25.0%
! GAATTTCTTCAATTTCTTGA+TGG + chr2_4:30926010-30926029 None:intergenic 25.0%
! TAAAACATCTTTACAACTTG+AGG + chr2_4:30926034-30926053 None:intergenic 25.0%
!!! AAAGTACTGCTTAAATTGAA+AGG - chr2_4:30926144-30926163 Msa0324910:intron 25.0%
! CTGAAATATAGAAGAATAAG+AGG - chr2_4:30926304-30926323 Msa0324910:intron 25.0%
! ATGATAACTATTGTGAAAAG+AGG + chr2_4:30926513-30926532 None:intergenic 25.0%
! AGATGTTGCAAACATTAATA+TGG - chr2_4:30926831-30926850 Msa0324910:intron 25.0%
!!! ACTTACTTTTAGACTCATTT+AGG + chr2_4:30926893-30926912 None:intergenic 25.0%
!! ACATATAAGAGAGTGTAAAA+TGG + chr2_4:30927092-30927111 None:intergenic 25.0%
! ATTTATTGTAGGAAATGGAA+AGG + chr2_4:30927130-30927149 None:intergenic 25.0%
! TTGTGATTTATTGTAGGAAA+TGG + chr2_4:30927135-30927154 None:intergenic 25.0%
! TGCATATTGTGATTTATTGT+AGG + chr2_4:30927141-30927160 None:intergenic 25.0%
! TTCCTAGAGTAGTATAAATA+AGG + chr2_4:30927396-30927415 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG - chr2_4:30927395-30927414 Msa0324910:intron 25.0%
! AAAAATCCATACTAACAACT+TGG - chr2_4:30927771-30927790 Msa0324910:intron 25.0%
! GAAATCTATCATAATTTCTG+AGG - chr2_4:30928367-30928386 Msa0324910:intron 25.0%
!! AAAATCTCTTTTGAATCAGT+AGG - chr2_4:30928701-30928720 Msa0324910:intron 25.0%
TAAAAATGGAAACCAGTCTT+CGG - chr2_4:30924371-30924390 Msa0324910:CDS 30.0%
CTAACTTCTTAAGATAACAG+TGG + chr2_4:30924622-30924641 None:intergenic 30.0%
CTTAAGAAGTTAGAACACTT+AGG - chr2_4:30924629-30924648 Msa0324910:intron 30.0%
!!! AATTACATCCTTTTTTTGGC+AGG - chr2_4:30924723-30924742 Msa0324910:intron 30.0%
CAGAGATCTAACATCATTAT+TGG - chr2_4:30924766-30924785 Msa0324910:intron 30.0%
TCTAACATCATTATTGGTGA+TGG - chr2_4:30924772-30924791 Msa0324910:intron 30.0%
TTCTTTGTAGAAAATCCATC+TGG - chr2_4:30924932-30924951 Msa0324910:intron 30.0%
TCTTTGTAGAAAATCCATCT+GGG - chr2_4:30924933-30924952 Msa0324910:intron 30.0%
! TTAGTAGCATTTCTTTTGAC+AGG - chr2_4:30925156-30925175 Msa0324910:intron 30.0%
AAAGAAAAAGACTGTCAAAC+AGG - chr2_4:30925200-30925219 Msa0324910:intron 30.0%
TATCTAACTTCTGATGTGTT+TGG - chr2_4:30925354-30925373 Msa0324910:intron 30.0%
! ATTTTATCTACAGAAATCCC+AGG - chr2_4:30925403-30925422 Msa0324910:intron 30.0%
! TTTTATCTACAGAAATCCCA+GGG - chr2_4:30925404-30925423 Msa0324910:intron 30.0%
AAAATGTTTAGGGAAGCTAT+TGG + chr2_4:30925443-30925462 None:intergenic 30.0%
TGAAATCATTTGGACACTAA+GGG - chr2_4:30925464-30925483 Msa0324910:intron 30.0%
! TGATAGGATTAGTACGTAAT+GGG + chr2_4:30925589-30925608 None:intergenic 30.0%
! ATGATAGGATTAGTACGTAA+TGG + chr2_4:30925590-30925609 None:intergenic 30.0%
GAGTCAATAGATTTGTGATT+GGG + chr2_4:30925724-30925743 None:intergenic 30.0%
GAGTTGGGAAAAATTTGAAA+TGG + chr2_4:30925818-30925837 None:intergenic 30.0%
!! ATATGATAACAAACGGGTTA+AGG + chr2_4:30925915-30925934 None:intergenic 30.0%
!! GCAGAGTTTAATAACTTGTT+TGG + chr2_4:30925962-30925981 None:intergenic 30.0%
ATAAGCTATCGTATTCAAGT+TGG - chr2_4:30926078-30926097 Msa0324910:intron 30.0%
! CACTTACTTGATTTTCGTAT+TGG + chr2_4:30926236-30926255 None:intergenic 30.0%
CGAAAATCAAGTAAGTGTTA+TGG - chr2_4:30926239-30926258 Msa0324910:intron 30.0%
AGAATAAGAGGTCAAAAGAT+AGG - chr2_4:30926316-30926335 Msa0324910:intron 30.0%
GAATAAGAGGTCAAAAGATA+GGG - chr2_4:30926317-30926336 Msa0324910:intron 30.0%
TGTCTATCAAAAATGGTTCA+GGG - chr2_4:30927013-30927032 Msa0324910:intron 30.0%
TACACTCTCTTATATGTACA+CGG - chr2_4:30927095-30927114 Msa0324910:intron 30.0%
TGCATTTATAAGATCTCAAC+TGG - chr2_4:30927246-30927265 Msa0324910:intron 30.0%
!! AGCCTTATTTATACTACTCT+AGG - chr2_4:30927391-30927410 Msa0324910:intron 30.0%
ACTTTGATCTCAACAATAGA+AGG + chr2_4:30927741-30927760 None:intergenic 30.0%
TTGAGATCAAAGTAATCCAA+GGG - chr2_4:30927748-30927767 Msa0324910:intron 30.0%
GTATAATTACATCCTTTCTG+TGG - chr2_4:30928318-30928337 Msa0324910:CDS 30.0%
GATTTCTGCTTCTTACTTAA+AGG + chr2_4:30928353-30928372 None:intergenic 30.0%
! TCTATCATAATTTCTGAGGA+TGG - chr2_4:30928371-30928390 Msa0324910:intron 30.0%
TTCTTTGTAGAAAATCCATC+TGG - chr2_4:30924932-30924951 Msa0324910:intron 30.0%
TCTTTGTAGAAAATCCATCT+GGG - chr2_4:30924933-30924952 Msa0324910:intron 30.0%
ATTCAGATTCATATTCAGAG+AGG + chr2_4:30928582-30928601 None:intergenic 30.0%
!! ACTGTAGAAGTATTGCTTAT+CGG - chr2_4:30928859-30928878 Msa0324910:intron 30.0%
!!! AGACTGGTTTCCATTTTTAG+TGG + chr2_4:30924370-30924389 None:intergenic 35.0%
! GTTCCATCCTTATCATGTTT+TGG + chr2_4:30924399-30924418 None:intergenic 35.0%
ATAAGGATGGAACCTTAATG+AGG - chr2_4:30924406-30924425 Msa0324910:CDS 35.0%
GAACAAACTGTACCTCATTA+AGG + chr2_4:30924421-30924440 None:intergenic 35.0%
! ACAGTTTGTTCTTGTTCTTC+TGG - chr2_4:30924430-30924449 Msa0324910:CDS 35.0%
! GCACATAAAGGATTTTGTTC+AGG + chr2_4:30924484-30924503 None:intergenic 35.0%
GTGAAATCATTTGGACACTA+AGG - chr2_4:30925463-30925482 Msa0324910:intron 35.0%
!! TTGTTGTTTGATGTACCAAC+AGG - chr2_4:30925548-30925567 Msa0324910:intron 35.0%
GGAGTCAATAGATTTGTGAT+TGG + chr2_4:30925725-30925744 None:intergenic 35.0%
GGTAGAATTGTTGCTGAAAA+TGG + chr2_4:30925746-30925765 None:intergenic 35.0%
ATGGTAGATATGCAGAGAAT+GGG + chr2_4:30925772-30925791 None:intergenic 35.0%
! AAAAAATGGAAGCACACACA+TGG + chr2_4:30925791-30925810 None:intergenic 35.0%
ATGGATCGTAAACAAGAGTT+GGG + chr2_4:30925833-30925852 None:intergenic 35.0%
TCATATCATGTGTTCGAGTA+AGG + chr2_4:30925860-30925879 None:intergenic 35.0%
TAAGGATATGATAGGAGAGT+GGG + chr2_4:30925897-30925916 None:intergenic 35.0%
TTAAGGATATGATAGGAGAG+TGG + chr2_4:30925898-30925917 None:intergenic 35.0%
!! AAACGGGTTAAGGATATGAT+AGG + chr2_4:30925905-30925924 None:intergenic 35.0%
!! TTCAAGTTGGTTGGTTGAAA+TGG - chr2_4:30926091-30926110 Msa0324910:intron 35.0%
CTTATTGCATAAAACACCTG+AGG + chr2_4:30926124-30926143 None:intergenic 35.0%
AAGTAAGTGTTATGGAGATG+AGG - chr2_4:30926247-30926266 Msa0324910:intron 35.0%
GGCAGAAAATGTGACAAAAT+AGG - chr2_4:30926338-30926357 Msa0324910:intron 35.0%
TGACTATGTGTATTGTGGAA+AGG + chr2_4:30926407-30926426 None:intergenic 35.0%
!!! TTTTGGGAAGTGTTTCAAAC+AGG - chr2_4:30926659-30926678 Msa0324910:intron 35.0%
! TGCTTTCTAGCACAACTAAT+TGG - chr2_4:30926759-30926778 Msa0324910:intron 35.0%
! CTTTTTCCCGTTAATTGTCA+AGG + chr2_4:30926980-30926999 None:intergenic 35.0%
GTGTCTATCAAAAATGGTTC+AGG - chr2_4:30927012-30927031 Msa0324910:intron 35.0%
GGGAGAATGATAGAGAATTA+TGG + chr2_4:30927625-30927644 None:intergenic 35.0%
TAATTCTCTATCATTCTCCC+CGG - chr2_4:30927625-30927644 Msa0324910:intron 35.0%
! AAGAAGAATTTCTAGACTCG+AGG + chr2_4:30927667-30927686 None:intergenic 35.0%
GTTGAGATCAAAGTAATCCA+AGG - chr2_4:30927747-30927766 Msa0324910:intron 35.0%
! GTTAGTATGGATTTTTCCCT+TGG + chr2_4:30927767-30927786 None:intergenic 35.0%
ATGTTCAGAACTAAATGCAG+CGG - chr2_4:30927967-30927986 Msa0324910:intron 35.0%
!! ACAGTTTGTTCTTTTTCCTC+TGG - chr2_4:30928120-30928139 Msa0324910:intron 35.0%
GCTATTAACAAGTTTACCAG+AGG + chr2_4:30924449-30924468 None:intergenic 35.0%
! TTCTGAGGATGGTAAGATTA+TGG - chr2_4:30928382-30928401 Msa0324910:intron 35.0%
AAGATTGTTAGCCACATGAA+CGG + chr2_4:30928503-30928522 None:intergenic 35.0%
CTCTCATACAAACGTGTTAT+AGG - chr2_4:30928760-30928779 Msa0324910:CDS 35.0%
ATAGCTCTTCATATTCTTGC+TGG + chr2_4:30929073-30929092 None:intergenic 35.0%
ATGAAGAGCTATGTAAAGTG+AGG - chr2_4:30929081-30929100 Msa0324910:intron 35.0%
TGAAGAGCTATGTAAAGTGA+GGG - chr2_4:30929082-30929101 Msa0324910:intron 35.0%
AAAATTCCGTCCTAACACAA+AGG - chr2_4:30929120-30929139 Msa0324910:intron 35.0%
! CTCAAGAGAATCGTTTTCAT+TGG + chr2_4:30929180-30929199 None:intergenic 35.0%
ACTGGGGAATCCACTAAAAA+TGG - chr2_4:30924357-30924376 Msa0324910:CDS 40.0%
TTCGGCACCAAAACATGATA+AGG - chr2_4:30924389-30924408 Msa0324910:CDS 40.0%
GCACCAAAACATGATAAGGA+TGG - chr2_4:30924393-30924412 Msa0324910:CDS 40.0%
! AAAGGATTTTGTTCAGGCCT+TGG + chr2_4:30924478-30924497 None:intergenic 40.0%
GATCTCTGCTTCATACTTGA+AGG + chr2_4:30924754-30924773 None:intergenic 40.0%
TGTAGAAAATCCATCTGGGA+TGG - chr2_4:30924937-30924956 Msa0324910:intron 40.0%
GGTACATACATGACCATGAT+CGG - chr2_4:30925255-30925274 Msa0324910:intron 40.0%
TGCTAACCCACAAAAAACCA+AGG + chr2_4:30925635-30925654 None:intergenic 40.0%
TGGTAGATATGCAGAGAATG+GGG + chr2_4:30925771-30925790 None:intergenic 40.0%
CATGGTAGATATGCAGAGAA+TGG + chr2_4:30925773-30925792 None:intergenic 40.0%
CATGGATCGTAAACAAGAGT+TGG + chr2_4:30925834-30925853 None:intergenic 40.0%
TGTGTTCGAGTAAGGAAACA+TGG + chr2_4:30925852-30925871 None:intergenic 40.0%
!! GCTATCGTATTCAAGTTGGT+TGG - chr2_4:30926082-30926101 Msa0324910:intron 40.0%
! TTTAGTGGACAACAGTGAGA+CGG - chr2_4:30926172-30926191 Msa0324910:intron 40.0%
TGTTGTATGGTACGAAGTGT+TGG - chr2_4:30926199-30926218 Msa0324910:intron 40.0%
! GTTGTATGGTACGAAGTGTT+GGG - chr2_4:30926200-30926219 Msa0324910:intron 40.0%
TGGCTTGACTATGTGTATTG+TGG + chr2_4:30926412-30926431 None:intergenic 40.0%
ACAGTATGACTTAACCTCTG+TGG - chr2_4:30926859-30926878 Msa0324910:intron 40.0%
CAGTATGACTTAACCTCTGT+GGG - chr2_4:30926860-30926879 Msa0324910:intron 40.0%
! TTTAGGATTGTTTCCCACAG+AGG + chr2_4:30926876-30926895 None:intergenic 40.0%
TTTCCCGTTAATTGTCAAGG+CGG + chr2_4:30926977-30926996 None:intergenic 40.0%
AACGGGAAAAAGAGAGTTGT+CGG - chr2_4:30926988-30927007 Msa0324910:intron 40.0%
GTCGGTGTGTCTATCAAAAA+TGG - chr2_4:30927006-30927025 Msa0324910:intron 40.0%
! ATAAGATCTCAACTGGCTCA+CGG - chr2_4:30927253-30927272 Msa0324910:intron 40.0%
CTTGAGTATGCCTAAACACT+TGG - chr2_4:30927363-30927382 Msa0324910:intron 40.0%
!! TAGCATCTCTGGAACTTTCT+AGG + chr2_4:30927513-30927532 None:intergenic 40.0%
TAGGATCATCTTAGCATCTC+TGG + chr2_4:30927524-30927543 None:intergenic 40.0%
AATTCTCTATCATTCTCCCC+GGG - chr2_4:30927626-30927645 Msa0324910:intron 40.0%
TCCATACTAACAACTTGGCA+AGG - chr2_4:30927776-30927795 Msa0324910:intron 40.0%
ATACTAACAACTTGGCAAGG+CGG - chr2_4:30927779-30927798 Msa0324910:intron 40.0%
GATGGGACATACATAACTGA+AGG - chr2_4:30927813-30927832 Msa0324910:intron 40.0%
AAGGTGAGAAAAACACGAGA+GGG - chr2_4:30927832-30927851 Msa0324910:intron 40.0%
! CTGATCAGTGTTTTCAGCTT+AGG + chr2_4:30927919-30927938 None:intergenic 40.0%
! GTTCCATCCCTAGCATTTTT+CGG + chr2_4:30928089-30928108 None:intergenic 40.0%
GAACAAACTGTACCTCATTG+AGG + chr2_4:30928111-30928130 None:intergenic 40.0%
AATTACATCCTTTCTGTGGC+AGG - chr2_4:30928322-30928341 Msa0324910:CDS 40.0%
! TGACTCTGACGCTGAATTTT+GGG - chr2_4:30928603-30928622 Msa0324910:intron 40.0%
CTATAGCTGCTAGCATATCA+CGG + chr2_4:30928835-30928854 None:intergenic 40.0%
TCTTCATATTCTTGCTGGCA+AGG + chr2_4:30929068-30929087 None:intergenic 40.0%
TAAAGTGAGGGACACTCTTA+AGG - chr2_4:30929094-30929113 Msa0324910:intron 40.0%
GGAAGCAAGAGATCAAGAGA+TGG - chr2_4:30924518-30924537 Msa0324910:intron 45.0%
AGGAGAGTCCTGCCAAAAAA+AGG + chr2_4:30924734-30924753 None:intergenic 45.0%
AAATTCTGAGCCATCCCAGA+TGG + chr2_4:30924950-30924969 None:intergenic 45.0%
! ATCTGGGATGGCTCAGAATT+TGG - chr2_4:30924949-30924968 Msa0324910:intron 45.0%
! TCTGGGATGGCTCAGAATTT+GGG - chr2_4:30924950-30924969 Msa0324910:intron 45.0%
! ATGTTGCAATGCACCGATCA+TGG + chr2_4:30925271-30925290 None:intergenic 45.0%
TGGATTCAAATCCAGACCCT+GGG + chr2_4:30925423-30925442 None:intergenic 45.0%
TTGGATTCAAATCCAGACCC+TGG + chr2_4:30925424-30925443 None:intergenic 45.0%
TCTCTATCTTGCGCACCAAA+CGG + chr2_4:30925491-30925510 None:intergenic 45.0%
GTGCGCAAGATAGAGAGATA+GGG - chr2_4:30925495-30925514 Msa0324910:intron 45.0%
AGATATGCAGAGAATGGGGT+CGG + chr2_4:30925767-30925786 None:intergenic 45.0%
GTGAGACGGACAATGTTGTA+TGG - chr2_4:30926186-30926205 Msa0324910:intron 45.0%
! AAGAGGCATAACACTGCATC+TGG + chr2_4:30926374-30926393 None:intergenic 45.0%
GACTGTAGTAGGCATACGTT+TGG + chr2_4:30926916-30926935 None:intergenic 45.0%
CGCAAACTCAAGACTGTAGT+AGG + chr2_4:30926927-30926946 None:intergenic 45.0%
ACTACAGTCTTGAGTTTGCG+AGG - chr2_4:30926927-30926946 Msa0324910:intron 45.0%
GAAGCCGCCTTGACAATTAA+CGG - chr2_4:30926970-30926989 Msa0324910:intron 45.0%
AAGCCGCCTTGACAATTAAC+GGG - chr2_4:30926971-30926990 Msa0324910:intron 45.0%
AAATGGTTCAGGGTTGCGTT+TGG - chr2_4:30927023-30927042 Msa0324910:intron 45.0%
!!! TCAGGGTTGCGTTTGGTTTT+TGG - chr2_4:30927030-30927049 Msa0324910:intron 45.0%
GAGTATGCCTAAACACTTGG+TGG - chr2_4:30927366-30927385 Msa0324910:intron 45.0%
GCCTTGCCAAGTTGTTAGTA+TGG + chr2_4:30927780-30927799 None:intergenic 45.0%
GAAGGTGAGAAAAACACGAG+AGG - chr2_4:30927831-30927850 Msa0324910:intron 45.0%
AGGTGAGAAAAACACGAGAG+GGG - chr2_4:30927833-30927852 Msa0324910:intron 45.0%
TGCTGCACCGAAAAATGCTA+GGG - chr2_4:30928079-30928098 Msa0324910:intron 45.0%
CGAAGCAAGAGATCAACAGA+TGG - chr2_4:30928208-30928227 Msa0324910:intron 45.0%
GAACGGTAGTTCATGGTGTT+TGG + chr2_4:30928486-30928505 None:intergenic 45.0%
ACCATGAACTACCGTTCATG+TGG - chr2_4:30928489-30928508 Msa0324910:intron 45.0%
TGTAGAAAATCCATCTGGGC+TGG - chr2_4:30928537-30928556 Msa0324910:CDS 45.0%
! CTGACTCTGACGCTGAATTT+TGG - chr2_4:30928602-30928621 Msa0324910:intron 45.0%
CAGTAGGATGTGCACATACT+TGG - chr2_4:30928717-30928736 Msa0324910:intron 45.0%
AGCGATCCTTTGTGTTAGGA+CGG + chr2_4:30929129-30929148 None:intergenic 45.0%
GCTTAGCGATCCTTTGTGTT+AGG + chr2_4:30929133-30929152 None:intergenic 45.0%
!!! ATGTTTTAAAATAAAATAAA+AGG - chr2_4:30926046-30926065 Msa0324910:intron 5.0%
!!! TGTTTTAAAATAAAATAAAA+GGG - chr2_4:30926047-30926066 Msa0324910:intron 5.0%
!!! AAAGTTTTTTTTTTTTTTTT+TGG - chr2_4:30928663-30928682 Msa0324910:intron 5.0%
!! TTTGTTTAAAAAATTTATTA+GGG + chr2_4:30928802-30928821 None:intergenic 5.0%
!! ATTTGTTTAAAAAATTTATT+AGG + chr2_4:30928803-30928822 None:intergenic 5.0%
!!! CATGTTTTGGTGCCGAAGAC+TGG + chr2_4:30924386-30924405 None:intergenic 50.0%
TTGCTGCACTGCGCACATAA+AGG + chr2_4:30924496-30924515 None:intergenic 50.0%
CACATGAACTGCAGTTCACG+TGG - chr2_4:30924889-30924908 Msa0324910:intron 50.0%
CTGGGATGGCTCAGAATTTG+GGG - chr2_4:30924951-30924970 Msa0324910:intron 50.0%
GAATTTGGGGACACTCGTCA+AGG - chr2_4:30924964-30924983 Msa0324910:intron 50.0%
TCTACAGAAATCCCAGGGTC+TGG - chr2_4:30925409-30925428 Msa0324910:intron 50.0%
CTCTATCTTGCGCACCAAAC+GGG + chr2_4:30925490-30925509 None:intergenic 50.0%
GGTGCGCAAGATAGAGAGAT+AGG - chr2_4:30925494-30925513 Msa0324910:intron 50.0%
TCGAAGGAGGTTGAAGGGTA+AGG + chr2_4:30925695-30925714 None:intergenic 50.0%
GTGAGTCGAAGGAGGTTGAA+GGG + chr2_4:30925700-30925719 None:intergenic 50.0%
TGTGAGTCGAAGGAGGTTGA+AGG + chr2_4:30925701-30925720 None:intergenic 50.0%
TGTGATTGGGTGTGAGTCGA+AGG + chr2_4:30925711-30925730 None:intergenic 50.0%
!! TTGAAATGGAGAAGCGCCTC+AGG - chr2_4:30926105-30926124 Msa0324910:intron 50.0%
!! GTATGGTACGAAGTGTTGGG+CGG - chr2_4:30926203-30926222 Msa0324910:intron 50.0%
TGGAGATGAGGATGTTGCGT+TGG - chr2_4:30926259-30926278 Msa0324910:intron 50.0%
GGAAAGGCTGTGAACTGAAG+AGG + chr2_4:30926391-30926410 None:intergenic 50.0%
ATCTATCCGTTGTGCGAAGC+AGG - chr2_4:30926798-30926817 Msa0324910:intron 50.0%
CAGTAACCTGCTTCGCACAA+CGG + chr2_4:30926807-30926826 None:intergenic 50.0%
! TCAACTGGCTCACGGACAAA+AGG - chr2_4:30927261-30927280 Msa0324910:intron 50.0%
TGGCTCACGGACAAAAGGAA+AGG - chr2_4:30927266-30927285 Msa0324910:intron 50.0%
AGGCTCACCACCAAGTGTTT+AGG + chr2_4:30927376-30927395 None:intergenic 50.0%
AAGGCGGCTTAGGAATTGGA+TGG - chr2_4:30927795-30927814 Msa0324910:intron 50.0%
AGGCGGCTTAGGAATTGGAT+GGG - chr2_4:30927796-30927815 Msa0324910:intron 50.0%
GGTGAGAAAAACACGAGAGG+GGG - chr2_4:30927834-30927853 Msa0324910:intron 50.0%
GTGAGAAAAACACGAGAGGG+GGG - chr2_4:30927835-30927854 Msa0324910:intron 50.0%
TGAGAAAAACACGAGAGGGG+GGG - chr2_4:30927836-30927855 Msa0324910:intron 50.0%
!! CATTTTTCGGTGCAGCAGAC+TGG + chr2_4:30928076-30928095 None:intergenic 50.0%
CTGCTGCACCGAAAAATGCT+AGG - chr2_4:30928078-30928097 Msa0324910:intron 50.0%
GCACCGAAAAATGCTAGGGA+TGG - chr2_4:30928083-30928102 Msa0324910:intron 50.0%
CTAGGGATGGAACCTCAATG+AGG - chr2_4:30928096-30928115 Msa0324910:intron 50.0%
AGGAGAATCCTGCCACAGAA+AGG + chr2_4:30928333-30928352 None:intergenic 50.0%
GCCACATGAACGGTAGTTCA+TGG + chr2_4:30928493-30928512 None:intergenic 50.0%
AAATTCTGAGCCAGCCCAGA+TGG + chr2_4:30928550-30928569 None:intergenic 50.0%
!! TCTGGGCTGGCTCAGAATTT+AGG - chr2_4:30928550-30928569 Msa0324910:CDS 50.0%
!! CTGGGCTGGCTCAGAATTTA+GGG - chr2_4:30928551-30928570 Msa0324910:CDS 50.0%
TATGTGCGCAGTGCAGCAAG+TGG - chr2_4:30924497-30924516 Msa0324910:intron 55.0%
TTGGACACTAAGGGCCCGTT+TGG - chr2_4:30925473-30925492 Msa0324910:intron 55.0%
GATTGGGTGTGAGTCGAAGG+AGG + chr2_4:30925708-30925727 None:intergenic 55.0%
CTCTATCATTCTCCCCGGGT+TGG - chr2_4:30927630-30927649 Msa0324910:intron 55.0%
AGGACGAGTCTCTTCCAACC+CGG + chr2_4:30927647-30927666 None:intergenic 55.0%
ACAACTTGGCAAGGCGGCTT+AGG - chr2_4:30927785-30927804 Msa0324910:intron 55.0%
TGGCAAGGCGGCTTAGGAAT+TGG - chr2_4:30927791-30927810 Msa0324910:intron 55.0%
GAGAAAAACACGAGAGGGGG+GGG - chr2_4:30927837-30927856 Msa0324910:intron 55.0%
AGAAAAACACGAGAGGGGGG+GGG - chr2_4:30927838-30927857 Msa0324910:intron 55.0%
GACGAGTCTCTTCCAACCCG+GGG + chr2_4:30927645-30927664 None:intergenic 60.0%
GGACGAGTCTCTTCCAACCC+GGG + chr2_4:30927646-30927665 None:intergenic 60.0%
GAAAAACACGAGAGGGGGGG+GGG - chr2_4:30927839-30927858 Msa0324910:intron 60.0%
AAAAACACGAGAGGGGGGGG+GGG - chr2_4:30927840-30927859 Msa0324910:intron 60.0%
AAAACACGAGAGGGGGGGGG+GGG - chr2_4:30927841-30927860 Msa0324910:intron 65.0%
AAACACGAGAGGGGGGGGGG+GGG - chr2_4:30927842-30927861 Msa0324910:intron 70.0%
AACACGAGAGGGGGGGGGGG+GGG - chr2_4:30927843-30927862 Msa0324910:intron 75.0%
! ACACGAGAGGGGGGGGGGGG+GGG - chr2_4:30927844-30927863 Msa0324910:intron 80.0%
! CACGAGAGGGGGGGGGGGGG+GGG - chr2_4:30927845-30927864 Msa0324910:intron 85.0%
! ACGAGAGGGGGGGGGGGGGG+GGG - chr2_4:30927846-30927865 Msa0324910:intron 85.0%
! CGAGAGGGGGGGGGGGGGGG+GGG - chr2_4:30927847-30927866 Msa0324910:intron 90.0%
! GAGAGGGGGGGGGGGGGGGG+GGG - chr2_4:30927848-30927867 Msa0324910:intron 90.0%
! AGAGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927849-30927868 Msa0324910:intron 90.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927850-30927869 Msa0324910:intron 95.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:30927851-30927870 Msa0324910:intron 95.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 30924354 30929199 30924354 ID=Msa0324910;Name=Msa0324910
chr2_4 mRNA 30924354 30929199 30924354 ID=Msa0324910-mRNA-1;Parent=Msa0324910;Name=Msa0324910-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0.6|0.66|6|0|157
chr2_4 exon 30929126 30929199 30929126 ID=Msa0324910-mRNA-1:exon:10380;Parent=Msa0324910-mRNA-1
chr2_4 exon 30928991 30929045 30928991 ID=Msa0324910-mRNA-1:exon:10379;Parent=Msa0324910-mRNA-1
chr2_4 exon 30928760 30928808 30928760 ID=Msa0324910-mRNA-1:exon:10378;Parent=Msa0324910-mRNA-1
chr2_4 exon 30928523 30928611 30928523 ID=Msa0324910-mRNA-1:exon:10377;Parent=Msa0324910-mRNA-1
chr2_4 exon 30928298 30928375 30928298 ID=Msa0324910-mRNA-1:exon:10376;Parent=Msa0324910-mRNA-1
chr2_4 exon 30924354 30924479 30924354 ID=Msa0324910-mRNA-1:exon:10375;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30929126 30929199 30929126 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30928991 30929045 30928991 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30928760 30928808 30928760 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30928523 30928611 30928523 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30928298 30928375 30928298 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
chr2_4 CDS 30924354 30924479 30924354 ID=Msa0324910-mRNA-1:cds;Parent=Msa0324910-mRNA-1
Gene Sequence

>Msa0324910

ATGACTGGGGAATCCACTAAAAATGGAAACCAGTCTTCGGCACCAAAACATGATAAGGATGGAACCTTAATGAGTGCAGCAAGTGGAAGCAAGAGATCAAGAGATGGAAATCAAGATGATAGTAACAAAGACTCTCCTTCAAGTATGAAGCAGAGATCTAACATCATTATTGGTGATGAAAATCCATCTGGGATGGCTCAGAATTTGGGGACACTCGTCAAGGAATCAGACACTGACATTGATGTTGATGCTCAACTAAAAAATATGGAAGTTGATGAAATAAGAAAAGAAAGAAAAAGACTGTCAAACAGGAAATCAGCTCAAAGATCAAAGATAAAGAAACAGCAAGAATATGAAGAGCTATGTAAAGTGAGGGACACTCTTAAGGAAGAAAATTCCGTCCTAACACAAAGGATCGCTAAGCTTTCTGAGAAATGTCTAGCGCTCACCAATGAAAACGATTCTCTTGAG

Protein sequence

>Msa0324910

MTGESTKNGNQSSAPKHDKDGTLMSAASGSKRSRDGNQDDSNKDSPSSMKQRSNIIIGDENPSGMAQNLGTLVKESDTDIDVDAQLKNMEVDEIRKERKRLSNRKSAQRSKIKKQQEYEELCKVRDTLKEENSVLTQRIAKLSEKCLALTNENDSLE