AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0324940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324940 MtrunA17_Chr1g0162721 58.252 309 58 9 14 253 1 307 6.42e-103 301
Msa0324940 MtrunA17_Chr2g0302481 55.660 212 54 2 57 253 2 188 1.78e-71 217
Msa0324940 MtrunA17_Chr2g0302501 62.069 116 38 2 7 116 13 128 3.35e-39 133
Msa0324940 MtrunA17_Chr4g0065261 62.921 89 32 1 165 253 88 175 3.78e-28 105
Msa0324940 MtrunA17_Chr8g0373571 47.500 80 42 0 168 247 260 339 2.54e-18 82.8
Msa0324940 MtrunA17_Chr5g0410531 38.542 96 57 2 146 240 286 380 8.80e-13 67.4
Msa0324940 MtrunA17_Chr8g0369161 37.363 91 55 2 146 235 285 374 1.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324940 AT4G36730.2 46.250 80 43 0 168 247 220 299 6.56e-17 79.0
Msa0324940 AT4G36730.1 46.250 80 43 0 168 247 222 301 7.38e-17 79.0
Msa0324940 AT2G35530.1 42.857 77 43 1 160 235 296 372 1.34e-13 70.1
Msa0324940 AT1G32150.1 43.750 64 36 0 168 231 295 358 9.51e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGGGCTGGGTCAGAATT+TGG 0.147766 2_4:-30973432 Msa0324940:CDS
GCAAATAATTTGTTGAAATC+TGG 0.194573 2_4:+30978851 None:intergenic
CACAAGTTTCTCGAGCTTAA+TGG 0.203537 2_4:-30979406 Msa0324940:CDS
TCTGGGCTGGGTCAGAATTT+GGG 0.213477 2_4:-30973431 Msa0324940:CDS
CTTCTGCATCAAAACATAAT+AGG 0.230110 2_4:-30978766 Msa0324940:CDS
CATTGAAGTAGTGCAATATT+TGG 0.230581 2_4:+30979221 None:intergenic
AAACACTCGCTGAGCTTTCT+AGG 0.255804 2_4:-30972706 Msa0324940:CDS
CTCTGCTACATGAGGATTAT+AGG 0.310651 2_4:+30979169 None:intergenic
AAATAAGAAAAGAAAGAAAA+AGG 0.331181 2_4:-30972921 Msa0324940:CDS
TTCTTTGTAGAAAATCCATC+TGG 0.342852 2_4:-30973449 Msa0324940:intron
CAAATAATTTGTTGAAATCT+GGG 0.364865 2_4:+30978852 None:intergenic
AGGATTATAGGAGAGCTCTA+TGG 0.365834 2_4:+30979181 None:intergenic
GAAGAGCTAGTTAAAGAGTA+TGG 0.380462 2_4:-30972373 Msa0324940:CDS
AATAGATCTGCAACCAATTC+TGG 0.383766 2_4:+30972349 None:intergenic
GCTCAGCGAGTGTTTGTGTT+AGG 0.391881 2_4:+30972714 None:intergenic
TTCTGCATCAAAACATAATA+GGG 0.394063 2_4:-30978765 Msa0324940:CDS
TCTTGATGCTCAACTAAAAC+TGG 0.396539 2_4:-30973375 Msa0324940:intron
TAAAGAGTATGGACCAGAAT+TGG 0.406806 2_4:-30972362 Msa0324940:CDS
GAATTTGGGGACAGTTGTTA+AGG 0.407905 2_4:-30973417 Msa0324940:CDS
TGGCAGACCTTACAATTTCT+CGG 0.413188 2_4:-30979361 Msa0324940:CDS
GTTTATCTGCGCAGGGCGGC+TGG 0.415010 2_4:-30978660 Msa0324940:intron
CCAGTAATTAAACTTAAAAC+AGG 0.417895 2_4:+30978815 None:intergenic
AAGATCAAAGATAAGGAAAC+AGG 0.427615 2_4:-30972875 Msa0324940:intron
AAGAAAGAATCCAATCCATT+TGG 0.432707 2_4:-30979381 Msa0324940:CDS
TCTGCGTACCATTTCTGAAA+AGG 0.446864 2_4:+30978880 None:intergenic
TGTAGAAAATCCATCTGGGC+TGG 0.452613 2_4:-30973444 Msa0324940:intron
CTGGGCTGGGTCAGAATTTG+GGG 0.465599 2_4:-30973430 Msa0324940:CDS
GTAAGGTCTGCCAAATGGAT+TGG 0.472361 2_4:+30979371 None:intergenic
CGGCTAAAAGATCAAAGATA+AGG 0.476540 2_4:-30972882 Msa0324940:CDS
AAGGCTGTCAAACAGGAAAT+CGG 0.480160 2_4:-30972902 Msa0324940:CDS
TGAGCTTTCTAGGAAATGTC+TGG 0.515005 2_4:-30972696 Msa0324940:CDS
GTAGAAAATCCATCTGGGCT+GGG 0.520703 2_4:-30973443 Msa0324940:intron
AAATTGTAAGGTCTGCCAAA+TGG 0.525325 2_4:+30979366 None:intergenic
AAATTCTGACCCAGCCCAGA+TGG 0.526322 2_4:+30973434 None:intergenic
TATCTGCGCAGGGCGGCTGG+TGG 0.532947 2_4:-30978657 Msa0324940:intron
GGATTATAGGAGAGCTCTAT+GGG 0.536305 2_4:+30979182 None:intergenic
AGCGGCGCCGAGAAATTGTA+AGG 0.545305 2_4:+30979354 None:intergenic
AGCGAGTGTTTGTGTTAGGA+CGG 0.551336 2_4:+30972718 None:intergenic
AATATTTATTCAGGAAGCTA+CGG 0.551586 2_4:-30979434 Msa0324940:intron
GCATCAAAACATAATAGGGA+TGG 0.558193 2_4:-30978761 Msa0324940:CDS
CAATGAAAACAATTCTATTG+TGG 0.574707 2_4:-30972666 Msa0324940:intron
TCTTTGTAGAAAATCCATCT+GGG 0.584157 2_4:-30973448 Msa0324940:intron
CTATAATCCTCATGTAGCAG+AGG 0.606649 2_4:-30979168 Msa0324940:intron
CGACCCACCTCTGCTACATG+AGG 0.618025 2_4:+30979161 None:intergenic
GGAAGTAAGAGATCAACAGA+TGG 0.635178 2_4:-30978636 Msa0324940:CDS
CATGATTTACTGACATCTAG+CGG 0.690857 2_4:+30979336 None:intergenic
ATAGGGATGGAACTTCAATG+AGG 0.746306 2_4:-30978748 Msa0324940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATAAAAAAAA+AGG + chr2_4:30974216-30974235 None:intergenic 0.0%
!!! TTATTTTAGTACTAATTTTA+TGG + chr2_4:30974255-30974274 None:intergenic 10.0%
!! ATGTTTATCAAAATATAATT+GGG + chr2_4:30974320-30974339 None:intergenic 10.0%
!!! ATTTTAATTTTTTTCCATTT+TGG + chr2_4:30975453-30975472 Msa0324950:intron 10.0%
!! ATTAAATAAATAGTTAAACA+AGG - chr2_4:30975841-30975860 Msa0324940:intron 10.0%
!!! AAATAAATGTATTTTTTTAG+TGG - chr2_4:30977963-30977982 Msa0324940:intron 10.0%
!!! TTTTTTTAATCGAAAAATAT+TGG - chr2_4:30978035-30978054 Msa0324940:intron 10.0%
!!! TAGGATTATGATATTTTTTA+GGG - chr2_4:30972387-30972406 Msa0324940:intron 15.0%
!! TTAAAAGCAAATATTTATTC+AGG - chr2_4:30972637-30972656 Msa0324940:intron 15.0%
!! TATAGTTAGTATATATTTAG+TGG - chr2_4:30973010-30973029 Msa0324940:intron 15.0%
!!! TGGATTTTCATATTTTTTTA+GGG - chr2_4:30973030-30973049 Msa0324940:intron 15.0%
!!! ATAAAAATGTTTATGCATTT+TGG - chr2_4:30973160-30973179 Msa0324940:intron 15.0%
!!! TTAAAATTTTTCTTTAGTAC+AGG - chr2_4:30973795-30973814 Msa0324940:intron 15.0%
!!! ACTAATTTTATGGAATATTA+TGG + chr2_4:30974245-30974264 None:intergenic 15.0%
!! GATGTTTATCAAAATATAAT+TGG + chr2_4:30974321-30974340 None:intergenic 15.0%
!!! CTTTAATATTGTTGTTATTT+AGG + chr2_4:30974857-30974876 None:intergenic 15.0%
!! AAAAATGTTACATTATAGTT+AGG - chr2_4:30975229-30975248 Msa0324940:intron 15.0%
!! AAAATGTTACATTATAGTTA+GGG - chr2_4:30975230-30975249 Msa0324940:intron 15.0%
!!! ATAGATAGATACTTTTTAAA+TGG - chr2_4:30977853-30977872 Msa0324940:intron 15.0%
!! AAATAAGAAAAGAAAGAAAA+AGG - chr2_4:30979159-30979178 Msa0324940:intron 15.0%
!! TTTCACTATTAATTAAGAAA+AGG - chr2_4:30979527-30979546 Msa0324940:intron 15.0%
!! ATAAATACTATAAAAGAAGA+TGG + chr2_4:30979553-30979572 None:intergenic 15.0%
!!! GTAGGATTATGATATTTTTT+AGG - chr2_4:30972386-30972405 Msa0324940:intron 20.0%
!! ATTAGATGTTTATCAATTAC+TGG + chr2_4:30972559-30972578 None:intergenic 20.0%
!! ACTTAATGTCAAAGAATATT+GGG + chr2_4:30972597-30972616 None:intergenic 20.0%
!! TACTTAATGTCAAAGAATAT+TGG + chr2_4:30972598-30972617 None:intergenic 20.0%
!!! GTGGATTTTCATATTTTTTT+AGG - chr2_4:30973029-30973048 Msa0324940:intron 20.0%
!!! GGATTTTCATATTTTTTTAG+GGG - chr2_4:30973031-30973050 Msa0324940:intron 20.0%
!!! CAAATAATTTGTTGAAATCT+GGG + chr2_4:30973231-30973250 None:intergenic 20.0%
!! TAATCACTACTAGAAAAATT+GGG - chr2_4:30973832-30973851 Msa0324940:intron 20.0%
!!! AAAAAAAAGGTTTTTAGAGA+CGG + chr2_4:30974203-30974222 None:intergenic 20.0%
!! ATAGAGAGATATAGTATTTA+GGG + chr2_4:30974775-30974794 None:intergenic 20.0%
!! AATAGAGAGATATAGTATTT+AGG + chr2_4:30974776-30974795 None:intergenic 20.0%
!! CTTATTAACTTACTTTGATT+TGG + chr2_4:30975290-30975309 Msa0324950:intron 20.0%
!! CAAATCAAAGTAAGTTAATA+AGG - chr2_4:30975288-30975307 Msa0324940:intron 20.0%
!!! TATTTTCACCAAAATTATTC+AGG + chr2_4:30975337-30975356 Msa0324950:intron 20.0%
!! ATACAATTGAAAACAACTTA+TGG - chr2_4:30975592-30975611 Msa0324940:intron 20.0%
!!! AATGTTTTTTTGTGTTGTTT+TGG + chr2_4:30975814-30975833 Msa0324950:exon 20.0%
!! AAATAGTTAAACAAGGATTA+AGG - chr2_4:30975848-30975867 Msa0324940:intron 20.0%
!! AATAGTTAAACAAGGATTAA+GGG - chr2_4:30975849-30975868 Msa0324940:intron 20.0%
!! AAGTATAATATGAAGAAATC+TGG + chr2_4:30975890-30975909 Msa0324950:CDS 20.0%
!! AACAAAGTAATAGAGAATTT+GGG - chr2_4:30975930-30975949 Msa0324940:intron 20.0%
!!! AATTTTACAAGTATTAACGT+GGG - chr2_4:30976063-30976082 Msa0324940:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG - chr2_4:30976563-30976582 Msa0324940:intron 20.0%
!! ATGTTAGTTAAAAATTCGTA+AGG + chr2_4:30976673-30976692 Msa0324950:intron 20.0%
!!! AATTTAATGTTGGTGATAAT+TGG + chr2_4:30976791-30976810 None:intergenic 20.0%
!! TTTAAGCTTGAATTTAATGT+TGG + chr2_4:30976801-30976820 None:intergenic 20.0%
!!! GAATGGATTATTATTAATGT+GGG + chr2_4:30977004-30977023 None:intergenic 20.0%
!!! AGAATGGATTATTATTAATG+TGG + chr2_4:30977005-30977024 None:intergenic 20.0%
!!! TTTTGCAATTTTTCTTCAAT+TGG + chr2_4:30977165-30977184 None:intergenic 20.0%
!!! TGTGTTTTCATTTTCTATTT+GGG + chr2_4:30977454-30977473 None:intergenic 20.0%
!!! TTGTGTTTTCATTTTCTATT+TGG + chr2_4:30977455-30977474 None:intergenic 20.0%
!!! GAAATTTTTTGGTTAAATTC+TGG - chr2_4:30977769-30977788 Msa0324940:intron 20.0%
!! AAATATGTGAATTATTTGAG+AGG - chr2_4:30977993-30978012 Msa0324940:intron 20.0%
!!! TTTTAATCGAAAAATATTGG+AGG - chr2_4:30978038-30978057 Msa0324940:intron 20.0%
!! TTTAATCGAAAAATATTGGA+GGG - chr2_4:30978039-30978058 Msa0324940:intron 20.0%
!!! TTATATCTTTTAGTTAGAGA+CGG - chr2_4:30978124-30978143 Msa0324940:intron 20.0%
!! AAATTAACGTAATAAAAGAC+TGG + chr2_4:30978810-30978829 None:intergenic 20.0%
!! AATTATATTCTACTACGATA+TGG + chr2_4:30978950-30978969 None:intergenic 20.0%
!! ATAATTGAACAAAGAAGAAA+GGG + chr2_4:30979455-30979474 None:intergenic 20.0%
!! TATAATTGAACAAAGAAGAA+AGG + chr2_4:30979456-30979475 None:intergenic 20.0%
! TTCAAAAATTCAGTTTCAAC+TGG - chr2_4:30972362-30972381 Msa0324940:CDS 25.0%
!!! TTTTGATAATTCCCCAAAAT+TGG - chr2_4:30972477-30972496 Msa0324940:intron 25.0%
!! TTTGATAATTCCCCAAAATT+GGG - chr2_4:30972478-30972497 Msa0324940:intron 25.0%
!! TTTACAAATCTCCCAATTTT+GGG + chr2_4:30972492-30972511 None:intergenic 25.0%
! TGACATTAAGTACATTATCT+CGG - chr2_4:30972606-30972625 Msa0324940:intron 25.0%
! AATATTTATTCAGGAAGCTA+CGG - chr2_4:30972646-30972665 Msa0324940:intron 25.0%
! TAAAGAAAACTAGTTAAGAC+AGG + chr2_4:30972775-30972794 None:intergenic 25.0%
! CAATGAATATATCTACTGAA+AGG + chr2_4:30972948-30972967 None:intergenic 25.0%
!!! TTTTCATATTTTTTTAGGGG+TGG - chr2_4:30973034-30973053 Msa0324940:intron 25.0%
!!! TTTCATATTTTTTTAGGGGT+GGG - chr2_4:30973035-30973054 Msa0324940:intron 25.0%
!!! GCAAATAATTTGTTGAAATC+TGG + chr2_4:30973232-30973251 None:intergenic 25.0%
! CCAGTAATTAAACTTAAAAC+AGG + chr2_4:30973268-30973287 None:intergenic 25.0%
!!! CCTGTTTTAAGTTTAATTAC+TGG - chr2_4:30973265-30973284 Msa0324940:intron 25.0%
! TTCTGCATCAAAACATAATA+GGG - chr2_4:30973315-30973334 Msa0324940:intron 25.0%
! CTAATCACTACTAGAAAAAT+TGG - chr2_4:30973831-30973850 Msa0324940:intron 25.0%
! CTCTTCTTTCATTTAAACAT+TGG + chr2_4:30974046-30974065 None:intergenic 25.0%
! GGAAATATATTTATCTGAGA+CGG + chr2_4:30974100-30974119 None:intergenic 25.0%
! AAGAAACATAATTGTTGCTA+TGG + chr2_4:30974464-30974483 None:intergenic 25.0%
! TAAAAAGAGCTTCAATAGTA+GGG + chr2_4:30974600-30974619 None:intergenic 25.0%
! TTAAAAAGAGCTTCAATAGT+AGG + chr2_4:30974601-30974620 None:intergenic 25.0%
!!! CATGATATTTTTTTGTTCGT+AGG + chr2_4:30974660-30974679 None:intergenic 25.0%
!!! TGAAGTTGTGTATTTTGAAA+AGG - chr2_4:30974678-30974697 Msa0324940:intron 25.0%
! TAGAGAGATATAGTATTTAG+GGG + chr2_4:30974774-30974793 None:intergenic 25.0%
! GAAACAATTGTTACAAATAG+TGG + chr2_4:30974809-30974828 None:intergenic 25.0%
! TTGAAAGTTGAAATGGAAAA+TGG + chr2_4:30974834-30974853 None:intergenic 25.0%
!!! ATTTAGGTTGAAAGTTGAAA+TGG + chr2_4:30974841-30974860 None:intergenic 25.0%
! TCACATCATATAAAGCAAAT+AGG - chr2_4:30974887-30974906 Msa0324940:intron 25.0%
! GTATTTATATTGGTGAAGAT+TGG + chr2_4:30974941-30974960 None:intergenic 25.0%
! TCTTCACCAATATAAATACA+AGG - chr2_4:30974942-30974961 Msa0324940:intron 25.0%
! CATTCTCCTTGTATTTATAT+TGG + chr2_4:30974951-30974970 None:intergenic 25.0%
! TTAACATTAGACAAATCAAG+AGG - chr2_4:30975076-30975095 Msa0324940:intron 25.0%
!! GTGCAGTTTAGATTTTTAAT+TGG + chr2_4:30975383-30975402 Msa0324950:intron 25.0%
! TATTGTATACAGGAAGAATT+TGG + chr2_4:30975418-30975437 Msa0324950:intron 25.0%
! ATGAAACTTGTATTGTATAC+AGG + chr2_4:30975428-30975447 Msa0324950:intron 25.0%
! TACAAGTTTCATAACCAAAA+TGG - chr2_4:30975436-30975455 Msa0324940:intron 25.0%
! TCATACTTGAAAATCTGATA+TGG + chr2_4:30975506-30975525 Msa0324950:five_prime_UTR 25.0%
!!! TTTTGGTTTCAGTTAAGATT+GGG + chr2_4:30975797-30975816 Msa0324950:five_prime_UTR 25.0%
!!! GTTCTAAAAAAACTCATAAG+TGG + chr2_4:30975913-30975932 Msa0324950:intron 25.0%
! GAACAAAGTAATAGAGAATT+TGG - chr2_4:30975929-30975948 Msa0324940:intron 25.0%
! ACAAAGTAATAGAGAATTTG+GGG - chr2_4:30975931-30975950 Msa0324940:intron 25.0%
!! ACCTTTTGAACTTGAAATAT+AGG - chr2_4:30975964-30975983 Msa0324940:intron 25.0%
!! CCTTTTGAACTTGAAATATA+GGG - chr2_4:30975965-30975984 Msa0324940:intron 25.0%
!! CTTTTGAACTTGAAATATAG+GGG - chr2_4:30975966-30975985 Msa0324940:intron 25.0%
!! GAATTTTACAAGTATTAACG+TGG - chr2_4:30976062-30976081 Msa0324940:intron 25.0%
!! ATTTTACAAGTATTAACGTG+GGG - chr2_4:30976064-30976083 Msa0324940:intron 25.0%
! ATCAAACCTTCTTAAATTCT+GGG - chr2_4:30976275-30976294 Msa0324940:intron 25.0%
!! ATGGTTAGCTAACAAAATTA+CGG + chr2_4:30976393-30976412 Msa0324950:intron 25.0%
!! TCAAACGATTTTTAATGCTA+TGG + chr2_4:30976412-30976431 Msa0324950:intron 25.0%
!! GAAATTTATATCCGATTTGA+AGG - chr2_4:30976562-30976581 Msa0324940:intron 25.0%
!!! ATTTTGGTGATTATTGAGAA+TGG + chr2_4:30977021-30977040 None:intergenic 25.0%
!! TCTAACAGACTCATTTTAAA+GGG - chr2_4:30977057-30977076 Msa0324940:intron 25.0%
!! CTCTTTTGTTCAAAAACTTT+GGG - chr2_4:30977679-30977698 Msa0324940:intron 25.0%
! AATATGTGATGTGATTTAGA+AGG - chr2_4:30977710-30977729 Msa0324940:intron 25.0%
!!! ACACTATACGTGAAATTTTT+TGG - chr2_4:30977758-30977777 Msa0324940:intron 25.0%
! TTAATCTTTAGCATTAGAGA+CGG + chr2_4:30978342-30978361 None:intergenic 25.0%
! CAGAAATTTATTGTTAGAGA+CGG + chr2_4:30978368-30978387 None:intergenic 25.0%
! CAAAAGAAATGCAACTAAAT+AGG + chr2_4:30979125-30979144 None:intergenic 25.0%
!! CACAATAGAATTGTTTTCAT+TGG + chr2_4:30979416-30979435 None:intergenic 25.0%
! CAATGAAAACAATTCTATTG+TGG - chr2_4:30979414-30979433 Msa0324940:CDS 25.0%
! TTAGGGTTTCCTTGTTTAAT+TGG - chr2_4:30972404-30972423 Msa0324940:intron 30.0%
! TTACAAATCTCCCAATTTTG+GGG + chr2_4:30972491-30972510 None:intergenic 30.0%
! GTTTACAAATCTCCCAATTT+TGG + chr2_4:30972493-30972512 None:intergenic 30.0%
AACTATCATCTGGTATTGTA+TGG - chr2_4:30972528-30972547 Msa0324940:intron 30.0%
AAGAAAGAATCCAATCCATT+TGG - chr2_4:30972699-30972718 Msa0324940:CDS 30.0%
CATTGAAGTAGTGCAATATT+TGG + chr2_4:30972862-30972881 None:intergenic 30.0%
!!! TTCATATTTTTTTAGGGGTG+GGG - chr2_4:30973036-30973055 Msa0324940:intron 30.0%
!! AATGTTTATGCATTTTGGTC+AGG - chr2_4:30973165-30973184 Msa0324940:intron 30.0%
CTTCTGCATCAAAACATAAT+AGG - chr2_4:30973314-30973333 Msa0324940:intron 30.0%
! ACACATTCAATTAGAAGTGT+CGG - chr2_4:30973689-30973708 Msa0324940:intron 30.0%
AGAAAAATTGGGAATAGAGA+CGG - chr2_4:30973843-30973862 Msa0324940:intron 30.0%
!!! GATTTTTCCTGTTTTAGAGA+CGG + chr2_4:30973876-30973895 None:intergenic 30.0%
CGGATTATATAAATTGGTGA+CGG + chr2_4:30974020-30974039 None:intergenic 30.0%
TTTCATTTAAACATTGGCGA+CGG + chr2_4:30974040-30974059 None:intergenic 30.0%
! AATATATTTATCTGAGACGG+TGG + chr2_4:30974097-30974116 None:intergenic 30.0%
TGTTTCTTCTCATGTTCAAT+AGG - chr2_4:30974418-30974437 Msa0324940:intron 30.0%
AAACATAATTGTTGCTATGG+AGG + chr2_4:30974461-30974480 None:intergenic 30.0%
TGTTTCTTCTCATGTTCAAT+AGG - chr2_4:30974418-30974437 Msa0324940:intron 30.0%
AAAAAGAGCTTCAATAGTAG+GGG + chr2_4:30974599-30974618 None:intergenic 30.0%
! GAAGCTTCATATTGTTACTT+AGG + chr2_4:30974719-30974738 None:intergenic 30.0%
! AACTCTCAAGTTCAGAATTT+TGG + chr2_4:30975018-30975037 Msa0324950:five_prime_UTR 30.0%
GATTTGTCTAATGTTAAAGC+TGG + chr2_4:30975073-30975092 Msa0324950:five_prime_UTR 30.0%
! ATTGAAACTTGGATTAGAGA+TGG + chr2_4:30975140-30975159 Msa0324950:five_prime_UTR 30.0%
ATCCAAGTTTCAATTCCATA+AGG - chr2_4:30975185-30975204 Msa0324940:intron 30.0%
CAATCGTCAAATCAAATACA+TGG - chr2_4:30975254-30975273 Msa0324940:intron 30.0%
TAATTGGAAATTGAAACTCG+TGG + chr2_4:30975367-30975386 Msa0324950:intron 30.0%
CTTCTATATTGCAACTTTGA+AGG + chr2_4:30975531-30975550 Msa0324950:five_prime_UTR 30.0%
GAGAGTTTATGGAAATAAGT+TGG + chr2_4:30975636-30975655 Msa0324950:intron 30.0%
!!! AGTTGTTTTTTGTGTCATCA+TGG + chr2_4:30975658-30975677 Msa0324950:intron 30.0%
!!! GTTTTGGTTTCAGTTAAGAT+TGG + chr2_4:30975798-30975817 Msa0324950:five_prime_UTR 30.0%
!! CCCTATATTTCAAGTTCAAA+AGG + chr2_4:30975968-30975987 Msa0324950:intron 30.0%
!!! ACAGTTTTCTGAAACAATAG+AGG - chr2_4:30976026-30976045 Msa0324940:intron 30.0%
AAGCACTTATTGGAAATTGA+GGG + chr2_4:30976240-30976259 Msa0324950:intron 30.0%
CATCAAACCTTCTTAAATTC+TGG - chr2_4:30976274-30976293 Msa0324940:intron 30.0%
TAGATGATTTCGAAGTTTGA+GGG + chr2_4:30976323-30976342 Msa0324950:CDS 30.0%
! TAACAAAATTACGGACGTTT+TGG + chr2_4:30976384-30976403 Msa0324950:intron 30.0%
! GAAAGTTCTTACTCTTTTAG+CGG - chr2_4:30976448-30976467 Msa0324940:intron 30.0%
GATATAAATTTCGCGTGATT+CGG + chr2_4:30976554-30976573 Msa0324950:intron 30.0%
ACATTCAATTCCCTTCAAAT+CGG + chr2_4:30976576-30976595 Msa0324950:intron 30.0%
ACTTGGAATTGATTGATTGT+TGG + chr2_4:30976612-30976631 Msa0324950:intron 30.0%
GTATATGTTGCTATGTAACT+TGG + chr2_4:30976629-30976648 Msa0324950:intron 30.0%
! TTGTCAAAACAGATTGGTTA+TGG + chr2_4:30976706-30976725 None:intergenic 30.0%
TAGAAAATTGCAGGAGTAAA+TGG + chr2_4:30976834-30976853 None:intergenic 30.0%
! ACTTTTGTTCAAAACGTGTT+TGG + chr2_4:30976909-30976928 None:intergenic 30.0%
AAAATGAGTCTGTTAGAGAA+AGG + chr2_4:30977054-30977073 None:intergenic 30.0%
! CTCTAACAGACTCATTTTAA+AGG - chr2_4:30977056-30977075 Msa0324940:intron 30.0%
! GGTTTATAGAATTTTCGCTT+GGG + chr2_4:30977121-30977140 None:intergenic 30.0%
! TGGTTTATAGAATTTTCGCT+TGG + chr2_4:30977122-30977141 None:intergenic 30.0%
!!! TGTCTTTATTTTGTGCTACA+TGG + chr2_4:30977142-30977161 None:intergenic 30.0%
AACTCAATATTCGAGAATGA+AGG - chr2_4:30977368-30977387 Msa0324940:intron 30.0%
!! TTTTCTATTTGGGTTCCATT+GGG + chr2_4:30977444-30977463 None:intergenic 30.0%
!! ATTTTCTATTTGGGTTCCAT+TGG + chr2_4:30977445-30977464 None:intergenic 30.0%
CAGCAAACATAAAGACAATT+CGG - chr2_4:30977543-30977562 Msa0324940:intron 30.0%
ATAAAGACAATTCGGAGATT+GGG - chr2_4:30977551-30977570 Msa0324940:intron 30.0%
!! AATCAAAATCTTGATGGGTT+TGG - chr2_4:30977638-30977657 Msa0324940:intron 30.0%
! GCTCTTTTGTTCAAAAACTT+TGG - chr2_4:30977678-30977697 Msa0324940:intron 30.0%
! TTTGTTCAAAAACTTTGGGA+TGG - chr2_4:30977683-30977702 Msa0324940:intron 30.0%
ATTTAGAAGGTTTGAATGAG+AGG - chr2_4:30977723-30977742 Msa0324940:intron 30.0%
TTTAGAAGGTTTGAATGAGA+GGG - chr2_4:30977724-30977743 Msa0324940:intron 30.0%
CTGGTTTAACTCAAGTTATT+TGG - chr2_4:30977788-30977807 Msa0324940:intron 30.0%
TAGTTAGAGACGGAATAATT+TGG - chr2_4:30978134-30978153 Msa0324940:intron 30.0%
ATTAGAGACAGAATTAGAGA+CGG - chr2_4:30978178-30978197 Msa0324940:intron 30.0%
GAAATTTGACCTAATAGAGA+CGG - chr2_4:30978269-30978288 Msa0324940:intron 30.0%
CAGAGATCTAACATGATTAT+TGG - chr2_4:30978510-30978529 Msa0324940:intron 30.0%
TCTAACATGATTATTGGTGA+TGG - chr2_4:30978516-30978535 Msa0324940:intron 30.0%
!! TATTGGTGATGGTAAGATTA+TGG - chr2_4:30978527-30978546 Msa0324940:intron 30.0%
! GGATTTTCTACAAAGAAACA+AGG + chr2_4:30978628-30978647 None:intergenic 30.0%
TTCTTTGTAGAAAATCCATC+TGG - chr2_4:30978631-30978650 Msa0324940:CDS 30.0%
TCTTTGTAGAAAATCCATCT+GGG - chr2_4:30978632-30978651 Msa0324940:CDS 30.0%
AGTTTAGCTAATTCACAGAA+AGG + chr2_4:30978777-30978796 None:intergenic 30.0%
CTCTCATACAAACATGTTAT+AGG - chr2_4:30978895-30978914 Msa0324940:CDS 30.0%
!!! TAGGAAGTGTTTTTAAGTAG+TGG - chr2_4:30978914-30978933 Msa0324940:intron 30.0%
! TTAGTTGCATTTCTTTTGAC+AGG - chr2_4:30979127-30979146 Msa0324940:intron 30.0%
AAGATCAAAGATAAGGAAAC+AGG - chr2_4:30979205-30979224 Msa0324940:CDS 30.0%
ATTCAACGATGTCTATGAAT+TGG - chr2_4:30979253-30979272 Msa0324940:intron 30.0%
ATCTAACAAAGAGAGATCAA+AGG + chr2_4:30979612-30979631 None:intergenic 30.0%
AATTCAGTTTCAACTGGAGT+AGG - chr2_4:30972368-30972387 Msa0324940:CDS 35.0%
! GGTTTCCTTGTTTAATTGGT+GGG - chr2_4:30972408-30972427 Msa0324940:intron 35.0%
TTTAATTGGTGGGAGTTGAA+GGG - chr2_4:30972418-30972437 Msa0324940:intron 35.0%
! TTGAAGGGTATAAGCGATTA+CGG - chr2_4:30972433-30972452 Msa0324940:intron 35.0%
! GATAGTTTGTCAGGTTTGAT+AGG + chr2_4:30972515-30972534 None:intergenic 35.0%
AAACCTGACAAACTATCATC+TGG - chr2_4:30972518-30972537 Msa0324940:intron 35.0%
! ATACCAGATGATAGTTTGTC+AGG + chr2_4:30972524-30972543 None:intergenic 35.0%
ATCATCTGGTATTGTATGGT+TGG - chr2_4:30972532-30972551 Msa0324940:intron 35.0%
AAATTGTAAGGTCTGCCAAA+TGG + chr2_4:30972717-30972736 None:intergenic 35.0%
CATGATTTACTGACATCTAG+CGG + chr2_4:30972747-30972766 None:intergenic 35.0%
!!! TATGTTTTGATGCAGAAGAC+TGG + chr2_4:30973312-30973331 None:intergenic 35.0%
GCATCAAAACATAATAGGGA+TGG - chr2_4:30973319-30973338 Msa0324940:intron 35.0%
! ACAGTTTGTTCTTGTTCTTC+TGG - chr2_4:30973356-30973375 Msa0324940:intron 35.0%
! AAACGATTTTGTTCACGCTT+TGG + chr2_4:30973404-30973423 None:intergenic 35.0%
!! TCAATTAGAAGTGTCGGTAT+CGG - chr2_4:30973695-30973714 Msa0324940:intron 35.0%
CTACAAAGGTTAGAACACTT+AGG - chr2_4:30973751-30973770 Msa0324940:intron 35.0%
GAAAAATTGGGAATAGAGAC+GGG - chr2_4:30973844-30973863 Msa0324940:intron 35.0%
AATCTAAATTCCGTCCCTAA+AGG + chr2_4:30973970-30973989 None:intergenic 35.0%
!! TGGCGACGGATTATATAAAT+TGG + chr2_4:30974026-30974045 None:intergenic 35.0%
TTTGTGACAGAGTTTAGAGA+CGG + chr2_4:30974121-30974140 None:intergenic 35.0%
! GGAATTTCATTGACTAGAGA+CGG + chr2_4:30974155-30974174 None:intergenic 35.0%
TCAATGAAATTCCGTCTCTA+CGG - chr2_4:30974162-30974181 Msa0324940:intron 35.0%
ATTAAAAGTTGCTGCTATGG+AGG + chr2_4:30974519-30974538 None:intergenic 35.0%
AGATAGATGTATACAGCCTT+TGG + chr2_4:30974543-30974562 None:intergenic 35.0%
AAAAGAGCTTCAATAGTAGG+GGG + chr2_4:30974598-30974617 None:intergenic 35.0%
TTCTGAACTTGAGAGTTTAG+AGG - chr2_4:30975021-30975040 Msa0324940:intron 35.0%
!! AATGTTAAAGCTGGTGGATT+TGG + chr2_4:30975064-30975083 Msa0324950:five_prime_UTR 35.0%
TTGTCTAATGTTAAAGCTGG+TGG + chr2_4:30975070-30975089 Msa0324950:five_prime_UTR 35.0%
GAAGTGAGAAGAATGAGTAT+TGG - chr2_4:30975098-30975117 Msa0324940:intron 35.0%
! GTTGATAGGGAATTGAAACT+TGG + chr2_4:30975151-30975170 Msa0324950:five_prime_UTR 35.0%
TGCCTTATGGAATTGAAACT+TGG + chr2_4:30975190-30975209 Msa0324950:five_prime_UTR 35.0%
! TGCTAACAGATTTTGCCTTA+TGG + chr2_4:30975203-30975222 Msa0324950:five_prime_UTR 35.0%
AGGCAAAATCTGTTAGCATA+AGG - chr2_4:30975205-30975224 Msa0324940:intron 35.0%
! CTCAGTCACCTGAATAATTT+TGG - chr2_4:30975326-30975345 Msa0324940:intron 35.0%
!!! GTCACAACTAGTTTTATTGG+AGG + chr2_4:30976002-30976021 Msa0324950:intron 35.0%
!!! GTCGTCACAACTAGTTTTAT+TGG + chr2_4:30976005-30976024 Msa0324950:intron 35.0%
TAAGCATTAATCTACCCCAA+AGG - chr2_4:30976134-30976153 Msa0324940:intron 35.0%
TTTAGATAGAACCCACCTTT+GGG + chr2_4:30976152-30976171 Msa0324950:intron 35.0%
! GAAGCACTTATTGGAAATTG+AGG + chr2_4:30976241-30976260 Msa0324950:intron 35.0%
CAATTTCCAATAAGTGCTTC+TGG - chr2_4:30976241-30976260 Msa0324940:intron 35.0%
GTAGATGATTTCGAAGTTTG+AGG + chr2_4:30976324-30976343 Msa0324950:CDS 35.0%
!!! GGTATCAGTTTCACTGATTT+TGG + chr2_4:30976363-30976382 Msa0324950:intron 35.0%
! GAAAAATGGTTACGGGTTTT+GGG + chr2_4:30976482-30976501 Msa0324950:intron 35.0%
!! GAGTTCTGAAAACACATTTG+AGG + chr2_4:30976522-30976541 Msa0324950:intron 35.0%
! GTGTTGTTGTCAAAACAGAT+TGG + chr2_4:30976712-30976731 None:intergenic 35.0%
! GTTGTTGTTGTATTATGAGC+TGG + chr2_4:30976734-30976753 None:intergenic 35.0%
! AACAACAACAGTCCATTTTC+AGG - chr2_4:30976745-30976764 Msa0324940:intron 35.0%
GATGTTTAAGCACCTGAAAA+TGG + chr2_4:30976760-30976779 None:intergenic 35.0%
!! TTGGTGTTGTAGAAAATTGC+AGG + chr2_4:30976843-30976862 None:intergenic 35.0%
! CTTGGAGTTTGAGTTATTCT+TGG + chr2_4:30976862-30976881 None:intergenic 35.0%
! GTTCAAAACGTGTTTGGAAT+TGG + chr2_4:30976903-30976922 None:intergenic 35.0%
AAGAGTTTGGATTGAAGAGT+TGG + chr2_4:30976933-30976952 None:intergenic 35.0%
AACTCTTCAATCCAAACTCT+TGG - chr2_4:30976932-30976951 Msa0324940:intron 35.0%
!!! TATTTTGACCACCAAGAGTT+TGG + chr2_4:30976946-30976965 None:intergenic 35.0%
! GAAAGGTTAGATGCGAATTT+TGG + chr2_4:30977037-30977056 None:intergenic 35.0%
TAAAGGGAAAATAGCACTCA+AGG - chr2_4:30977073-30977092 Msa0324940:intron 35.0%
ACTTGATTGAACTGGGAAAA+TGG + chr2_4:30977267-30977286 None:intergenic 35.0%
TGTTCGAACTTGATTGAACT+GGG + chr2_4:30977274-30977293 None:intergenic 35.0%
TTGTTCGAACTTGATTGAAC+TGG + chr2_4:30977275-30977294 None:intergenic 35.0%
GTTCAATCAAGTTCGAACAA+AGG - chr2_4:30977275-30977294 Msa0324940:intron 35.0%
!! AGAATGAAGGTACCTGATTA+GGG - chr2_4:30977381-30977400 Msa0324940:intron 35.0%
CATAAAGACAATTCGGAGAT+TGG - chr2_4:30977550-30977569 Msa0324940:intron 35.0%
AGCTCGAATCAAAATCTTGA+TGG - chr2_4:30977632-30977651 Msa0324940:intron 35.0%
GCTCGAATCAAAATCTTGAT+GGG - chr2_4:30977633-30977652 Msa0324940:intron 35.0%
GTTTGAATGAGAGGGATAAA+GGG - chr2_4:30977732-30977751 Msa0324940:intron 35.0%
! TTATTTGAGAGGAGAAGTGT+TGG - chr2_4:30978004-30978023 Msa0324940:intron 35.0%
TTTGACCTTTAGTGGAATGA+AGG - chr2_4:30978065-30978084 Msa0324940:intron 35.0%
! AGTAATTTTTCCCTCTGTGT+TGG + chr2_4:30978099-30978118 None:intergenic 35.0%
GAACATTCTGTCTCTAAATG+TGG - chr2_4:30978216-30978235 Msa0324940:intron 35.0%
TGACTAAATCCGTCTCTATT+AGG + chr2_4:30978281-30978300 None:intergenic 35.0%
! AATAGAGACGGATTTAGTCA+CGG - chr2_4:30978281-30978300 Msa0324940:intron 35.0%
TATTCCATCTCTAACAGAGA+CGG + chr2_4:30978400-30978419 None:intergenic 35.0%
!! AGAAAAGTTCTGAATACCGA+CGG + chr2_4:30978440-30978459 None:intergenic 35.0%
TCTTGATGCTCAACTAAAAC+TGG - chr2_4:30978705-30978724 Msa0324940:intron 35.0%
!!! TATTGTTTTTGACACGCTAG+CGG - chr2_4:30978984-30979003 Msa0324940:intron 35.0%
AAGCTGAGCAACATTAAGAA+GGG + chr2_4:30979071-30979090 None:intergenic 35.0%
TAAGCTGAGCAACATTAAGA+AGG + chr2_4:30979072-30979091 None:intergenic 35.0%
AAAGAAAAAGGCTGTCAAAC+AGG - chr2_4:30979171-30979190 Msa0324940:CDS 35.0%
CGGCTAAAAGATCAAAGATA+AGG - chr2_4:30979198-30979217 Msa0324940:CDS 35.0%
TCTTCACATTCTTTCTGACA+AGG + chr2_4:30979304-30979323 None:intergenic 35.0%
ACTCAAATTAGGAGCAATCT+TGG + chr2_4:30979667-30979686 None:intergenic 35.0%
CTCCTAATTTGAGTGTGATT+TGG - chr2_4:30979673-30979692 Msa0324940:intron 35.0%
CACCAAATCACACTCAAATT+AGG + chr2_4:30979678-30979697 None:intergenic 35.0%
! CTAATTTGAGTGTGATTTGG+TGG - chr2_4:30979676-30979695 Msa0324940:intron 35.0%
GAAGAGCTAGTTAAAGAGTA+TGG - chr2_4:30979707-30979726 Msa0324940:intron 35.0%
! TAAAGAGTATGGACCAGAAT+TGG - chr2_4:30979718-30979737 Msa0324940:intron 35.0%
AATAGATCTGCAACCAATTC+TGG + chr2_4:30979734-30979753 None:intergenic 35.0%
! GGGTTTCCTTGTTTAATTGG+TGG - chr2_4:30972407-30972426 Msa0324940:intron 40.0%
CAACTCCCACCAATTAAACA+AGG + chr2_4:30972416-30972435 None:intergenic 40.0%
GTTTAATTGGTGGGAGTTGA+AGG - chr2_4:30972417-30972436 Msa0324940:intron 40.0%
CACAAGTTTCTCGAGCTTAA+TGG - chr2_4:30972674-30972693 Msa0324940:CDS 40.0%
TGGCAGACCTTACAATTTCT+CGG - chr2_4:30972719-30972738 Msa0324940:CDS 40.0%
GGATTATAGGAGAGCTCTAT+GGG + chr2_4:30972901-30972920 None:intergenic 40.0%
AGGATTATAGGAGAGCTCTA+TGG + chr2_4:30972902-30972921 None:intergenic 40.0%
CTCTGCTACATGAGGATTAT+AGG + chr2_4:30972914-30972933 None:intergenic 40.0%
CTATAATCCTCATGTAGCAG+AGG - chr2_4:30972912-30972931 Msa0324940:CDS 40.0%
!!! TATTTTTTTAGGGGTGGGGT+TGG - chr2_4:30973040-30973059 Msa0324940:intron 40.0%
!!! ATTTTTTTAGGGGTGGGGTT+GGG - chr2_4:30973041-30973060 Msa0324940:intron 40.0%
! TCTGCGTACCATTTCTGAAA+AGG + chr2_4:30973203-30973222 None:intergenic 40.0%
! TTTTGATGCAGAAGACTGGT+TGG + chr2_4:30973308-30973327 None:intergenic 40.0%
ATAGGGATGGAACTTCAATG+AGG - chr2_4:30973332-30973351 Msa0324940:intron 40.0%
ACAAAATCGTTTATCTGCGC+AGG - chr2_4:30973412-30973431 Msa0324940:CDS 40.0%
CAAAATCGTTTATCTGCGCA+GGG - chr2_4:30973413-30973432 Msa0324940:CDS 40.0%
GGAAGTAAGAGATCAACAGA+TGG - chr2_4:30973444-30973463 Msa0324940:intron 40.0%
TACTACAGATGTTGACGTGT+CGG + chr2_4:30973590-30973609 None:intergenic 40.0%
! ACACCTTCGTTTAGAAGTGT+CGG - chr2_4:30973726-30973745 Msa0324940:intron 40.0%
!! GCAAAATCCGTCTCTAAAAC+AGG - chr2_4:30973866-30973885 Msa0324940:intron 40.0%
GTCTCTAAACATGTCTGTGA+CGG - chr2_4:30973897-30973916 Msa0324940:intron 40.0%
AGAGACGACAAAAACAACGA+CGG + chr2_4:30973943-30973962 None:intergenic 40.0%
!! TTGTCGTCTCTAAAGCCTTT+AGG - chr2_4:30973952-30973971 Msa0324940:intron 40.0%
!! TGTCGTCTCTAAAGCCTTTA+GGG - chr2_4:30973953-30973972 Msa0324940:intron 40.0%
ATTTCCGTCTCTGATAGAGA+CGG - chr2_4:30973987-30974006 Msa0324940:intron 40.0%
TAATCCGTCTCTATCAGAGA+CGG + chr2_4:30973994-30974013 None:intergenic 40.0%
GGCATTAAAAGTTGCTGCTA+TGG + chr2_4:30974522-30974541 None:intergenic 40.0%
! GCAGCAACTTTTAATGCCAA+AGG - chr2_4:30974524-30974543 Msa0324940:intron 40.0%
! CTTGGATTAGAGAACTTGAG+AGG + chr2_4:30975133-30975152 Msa0324950:five_prime_UTR 40.0%
GTGTCATCATGGAGAGTTTA+TGG + chr2_4:30975647-30975666 Msa0324950:intron 40.0%
!!! GCAAAGATCTCTGCTTTTTC+AGG + chr2_4:30975733-30975752 Msa0324950:intron 40.0%
TGGTTTCAGTTAAGATTGGG+AGG + chr2_4:30975794-30975813 Msa0324950:five_prime_UTR 40.0%
CATTAATCTACCCCAAAGGT+GGG - chr2_4:30976138-30976157 Msa0324940:intron 40.0%
TTAGATAGAACCCACCTTTG+GGG + chr2_4:30976151-30976170 Msa0324950:intron 40.0%
CTTTAGATAGAACCCACCTT+TGG + chr2_4:30976153-30976172 Msa0324950:intron 40.0%
! CAAAGGTGGGTTCTATCTAA+AGG - chr2_4:30976151-30976170 Msa0324940:intron 40.0%
!!! CTTGTGCTGTTTTGCAAAAG+CGG + chr2_4:30976199-30976218 Msa0324950:intron 40.0%
!! AAGCATCCAGAAGCACTTAT+TGG + chr2_4:30976250-30976269 Msa0324950:intron 40.0%
GCTGAACCCAGAATTTAAGA+AGG + chr2_4:30976284-30976303 Msa0324950:intron 40.0%
AGAACTTTCTCTCTGTAGCT+TGG + chr2_4:30976437-30976456 Msa0324950:intron 40.0%
! GGAAAAATGGTTACGGGTTT+TGG + chr2_4:30976483-30976502 Msa0324950:intron 40.0%
TCCTGCTGGAAAAATGGTTA+CGG + chr2_4:30976490-30976509 Msa0324950:intron 40.0%
CTACTTGGAAGCTTGAAACT+TGG + chr2_4:30976880-30976899 None:intergenic 40.0%
TCTTCAATCCAAACTCTTGG+TGG - chr2_4:30976935-30976954 Msa0324940:intron 40.0%
! TTAATGTGGGCTATGTGTGT+GGG + chr2_4:30976991-30977010 None:intergenic 40.0%
! ATTAATGTGGGCTATGTGTG+TGG + chr2_4:30976992-30977011 None:intergenic 40.0%
CAATCAAGTTCGAACAAAGG+CGG - chr2_4:30977278-30977297 Msa0324940:intron 40.0%
!! GAGAATGAAGGTACCTGATT+AGG - chr2_4:30977380-30977399 Msa0324940:intron 40.0%
TCATTCCACAAACCCTAATC+AGG + chr2_4:30977396-30977415 None:intergenic 40.0%
TGATTAGGGTTTGTGGAATG+AGG - chr2_4:30977395-30977414 Msa0324940:intron 40.0%
!!! GTACGGTAGTATTGCTGTTT+TGG + chr2_4:30977422-30977441 None:intergenic 40.0%
! TATTTGGGTTCCATTGGGTA+CGG + chr2_4:30977439-30977458 None:intergenic 40.0%
GTGAAAGTGAATCGCAGATT+GGG - chr2_4:30977600-30977619 Msa0324940:intron 40.0%
GGTTTGAATGAGAGGGATAA+AGG - chr2_4:30977731-30977750 Msa0324940:intron 40.0%
!! GAGGGAATTTTGACCTTTAG+TGG - chr2_4:30978057-30978076 Msa0324940:intron 40.0%
CAAAGCCTTCATTCCACTAA+AGG + chr2_4:30978073-30978092 None:intergenic 40.0%
CTTTAGTGGAATGAAGGCTT+TGG - chr2_4:30978071-30978090 Msa0324940:intron 40.0%
ACGGATTTAGTCACGGAATA+TGG - chr2_4:30978288-30978307 Msa0324940:intron 40.0%
AATTCCGTCTCTGTTAGAGA+TGG - chr2_4:30978393-30978412 Msa0324940:intron 40.0%
AATCCGTCTCTAAATTCCGT+CGG - chr2_4:30978421-30978440 Msa0324940:intron 40.0%
ATACCGACGGAATTTAGAGA+CGG + chr2_4:30978427-30978446 None:intergenic 40.0%
AGTGAATCACATCCTTTCCT+TGG - chr2_4:30978463-30978482 Msa0324940:intron 40.0%
GATCTCTGCTTCATACTTGA+AGG + chr2_4:30978498-30978517 None:intergenic 40.0%
GAATTTGGGGACAGTTGTTA+AGG - chr2_4:30978663-30978682 Msa0324940:intron 40.0%
GAAAATCTGCTCACAACAAC+AGG - chr2_4:30978870-30978889 Msa0324940:CDS 40.0%
TACAGTAGCAATGATGCCTA+CGG - chr2_4:30979016-30979035 Msa0324940:intron 40.0%
AAGGCTGTCAAACAGGAAAT+CGG - chr2_4:30979178-30979197 Msa0324940:CDS 40.0%
TCGTTGAATTGCACCAATCA+TGG + chr2_4:30979242-30979261 None:intergenic 40.0%
! TGAGCTTTCTAGGAAATGTC+TGG - chr2_4:30979384-30979403 Msa0324940:CDS 40.0%
!! ATTTGAGTGTGATTTGGTGG+TGG - chr2_4:30979679-30979698 Msa0324940:intron 40.0%
GTAAGGTCTGCCAAATGGAT+TGG + chr2_4:30972712-30972731 None:intergenic 45.0%
TAATCCTCATGTAGCAGAGG+TGG - chr2_4:30972915-30972934 Msa0324940:CDS 45.0%
AATCCTCATGTAGCAGAGGT+GGG - chr2_4:30972916-30972935 Msa0324940:CDS 45.0%
!!! TTTTTTTAGGGGTGGGGTTG+GGG - chr2_4:30973042-30973061 Msa0324940:intron 45.0%
!!! TGCACTGGCCTTTTCAGAAA+TGG - chr2_4:30973192-30973211 Msa0324940:intron 45.0%
!! AACCTATGAAGCATCGACAC+TGG - chr2_4:30973555-30973574 Msa0324940:intron 45.0%
!! TAGAAGTGTCGGTGCTACAA+AGG - chr2_4:30973737-30973756 Msa0324940:intron 45.0%
!! GTCTCTAAAGCCTTTAGGGA+CGG - chr2_4:30973957-30973976 Msa0324940:intron 45.0%
AGAGATTAATCCGTCGCAGT+TGG - chr2_4:30974062-30974081 Msa0324940:intron 45.0%
AAATTCCGTCTCTACGGAGA+CGG - chr2_4:30974168-30974187 Msa0324940:intron 45.0%
CTTCAATAGTAGGGGGTCTT+TGG + chr2_4:30974591-30974610 None:intergenic 45.0%
! AGAGATGGCTGTGGTTGATA+GGG + chr2_4:30975164-30975183 Msa0324950:five_prime_UTR 45.0%
TAGAGATGGCTGTGGTTGAT+AGG + chr2_4:30975165-30975184 Msa0324950:five_prime_UTR 45.0%
! ACTTGGATTAGAGATGGCTG+TGG + chr2_4:30975173-30975192 Msa0324950:five_prime_UTR 45.0%
AGCAGAGATCTTTGCTTGTC+AGG - chr2_4:30975738-30975757 Msa0324940:intron 45.0%
GCATTAATCTACCCCAAAGG+TGG - chr2_4:30976137-30976156 Msa0324940:intron 45.0%
GAACTCACCAAAACAGCTTC+TGG - chr2_4:30976173-30976192 Msa0324940:intron 45.0%
CCTGCTGGAAAAATGGTTAC+GGG + chr2_4:30976489-30976508 Msa0324950:intron 45.0%
GCGAAATCCTGCTGGAAAAA+TGG + chr2_4:30976496-30976515 Msa0324950:intron 45.0%
! CGTGTTTGGAATTGGCTACT+TGG + chr2_4:30976895-30976914 None:intergenic 45.0%
! CTTGGGTTGTACTTGAGGTT+GGG + chr2_4:30977104-30977123 None:intergenic 45.0%
! TTTCGCTTGGGTTGTACTTG+AGG + chr2_4:30977109-30977128 None:intergenic 45.0%
AGGTACCTGATTAGGGTTTG+TGG - chr2_4:30977388-30977407 Msa0324940:intron 45.0%
AGCAATACTACCGTACCCAA+TGG - chr2_4:30977426-30977445 Msa0324940:intron 45.0%
TTCGGAGATTGGGTGTCAAT+CGG - chr2_4:30977561-30977580 Msa0324940:intron 45.0%
AATCGGCGATTGAGAAGGTT+GGG - chr2_4:30977578-30977597 Msa0324940:intron 45.0%
GGTGAAAGTGAATCGCAGAT+TGG - chr2_4:30977599-30977618 Msa0324940:intron 45.0%
!! TTTGAGAGGAGAAGTGTTGG+AGG - chr2_4:30978007-30978026 Msa0324940:intron 45.0%
!! TTGAGAGGAGAAGTGTTGGA+GGG - chr2_4:30978008-30978027 Msa0324940:intron 45.0%
GAGACGGAACTCATTTGACA+CGG - chr2_4:30978194-30978213 Msa0324940:intron 45.0%
GTCACGGAATATGGTTGTGA+CGG - chr2_4:30978297-30978316 Msa0324940:intron 45.0%
TCACGGAATATGGTTGTGAC+GGG - chr2_4:30978298-30978317 Msa0324940:intron 45.0%
AATCACATCCTTTCCTTGGC+AGG - chr2_4:30978467-30978486 Msa0324940:intron 45.0%
CACAAGAACTGCAGTTCATG+TGG - chr2_4:30978588-30978607 Msa0324940:intron 45.0%
TGTAGAAAATCCATCTGGGC+TGG - chr2_4:30978636-30978655 Msa0324940:CDS 45.0%
GTAGAAAATCCATCTGGGCT+GGG - chr2_4:30978637-30978656 Msa0324940:CDS 45.0%
ACAGTAGCAATGATGCCTAC+GGG - chr2_4:30979017-30979036 Msa0324940:intron 45.0%
AATGATGCCTACGGGAAGAT+TGG - chr2_4:30979025-30979044 Msa0324940:intron 45.0%
GGTACGTACTAGACCATGAT+TGG - chr2_4:30979226-30979245 Msa0324940:CDS 45.0%
AGCGAGTGTTTGTGTTAGGA+CGG + chr2_4:30979365-30979384 None:intergenic 45.0%
AAACACTCGCTGAGCTTTCT+AGG - chr2_4:30979374-30979393 Msa0324940:CDS 45.0%
!!! TTTTTTAGGGGTGGGGTTGG+GGG - chr2_4:30973043-30973062 Msa0324940:intron 50.0%
! TTTTGGTCAGGATGCTGCAC+TGG - chr2_4:30973177-30973196 Msa0324940:intron 50.0%
AATCGTTTATCTGCGCAGGG+CGG - chr2_4:30973416-30973435 Msa0324940:CDS 50.0%
!! GTCCAGTGTCGATGCTTCAT+AGG + chr2_4:30973560-30973579 None:intergenic 50.0%
! AGATGTTGACGTGTCGGTGT+CGG + chr2_4:30973584-30973603 None:intergenic 50.0%
TCATGCGTTGCGTCAGTATC+AGG - chr2_4:30973633-30973652 Msa0324940:intron 50.0%
! AGTGACACACGTGTTGGTGT+TGG - chr2_4:30973657-30973676 Msa0324940:intron 50.0%
! GCACCGACACTTCTAAACGA+AGG + chr2_4:30973732-30973751 None:intergenic 50.0%
! GTCTGTGACGGAATCAGAGA+CGG - chr2_4:30973909-30973928 Msa0324940:intron 50.0%
ACGGAATCAGAGACGGAACT+AGG - chr2_4:30973916-30973935 Msa0324940:intron 50.0%
TAATCCGTCGCAGTTGGAGA+CGG - chr2_4:30974068-30974087 Msa0324940:intron 50.0%
CAGTTAAGATTGGGAGGCCT+GGG + chr2_4:30975788-30975807 Msa0324950:five_prime_UTR 50.0%
TCAGTTAAGATTGGGAGGCC+TGG + chr2_4:30975789-30975808 Msa0324950:five_prime_UTR 50.0%
! AAAGCGGCCAGAAGCTGTTT+TGG + chr2_4:30976183-30976202 Msa0324950:intron 50.0%
CGAAGTTTGAGGGCTGATGT+AGG + chr2_4:30976313-30976332 Msa0324950:CDS 50.0%
!!! ATGGTTACGGGTTTTGGGAC+AGG + chr2_4:30976477-30976496 Msa0324950:intron 50.0%
!! CCCGTAACCATTTTTCCAGC+AGG - chr2_4:30976486-30976505 Msa0324940:intron 50.0%
TGGGCTATGTGTGTGGGATT+TGG + chr2_4:30976985-30977004 None:intergenic 50.0%
! GCTTGGGTTGTACTTGAGGT+TGG + chr2_4:30977105-30977124 None:intergenic 50.0%
GTGTCAATCGGCGATTGAGA+AGG - chr2_4:30977573-30977592 Msa0324940:intron 50.0%
CAATCGGCGATTGAGAAGGT+TGG - chr2_4:30977577-30977596 Msa0324940:intron 50.0%
AGGATAGTCCTGCCAAGGAA+AGG + chr2_4:30978478-30978497 None:intergenic 50.0%
CTTGAAGGATAGTCCTGCCA+AGG + chr2_4:30978483-30978502 None:intergenic 50.0%
AAATTCTGACCCAGCCCAGA+TGG + chr2_4:30978649-30978668 None:intergenic 50.0%
! ATCTGGGCTGGGTCAGAATT+TGG - chr2_4:30978648-30978667 Msa0324940:CDS 50.0%
! TCTGGGCTGGGTCAGAATTT+GGG - chr2_4:30978649-30978668 Msa0324940:CDS 50.0%
TGACACGCTAGCGGTTATAG+CGG - chr2_4:30978993-30979012 Msa0324940:intron 50.0%
TCCATCTCCAATCTTCCCGT+AGG + chr2_4:30979035-30979054 None:intergenic 50.0%
GCTCAGCGAGTGTTTGTGTT+AGG + chr2_4:30979369-30979388 None:intergenic 50.0%
!! GTGTGATTTGGTGGTGGAAC+AGG - chr2_4:30979685-30979704 Msa0324940:intron 50.0%
! AGCGGCGCCGAGAAATTGTA+AGG + chr2_4:30972729-30972748 None:intergenic 55.0%
TCAGGCAGTGACACACGTGT+TGG - chr2_4:30973651-30973670 Msa0324940:intron 55.0%
GTTTCCGTCTCCAACTGCGA+CGG + chr2_4:30974075-30974094 None:intergenic 55.0%
GTGATCCGTCTCCGTAGAGA+CGG + chr2_4:30974176-30974195 None:intergenic 55.0%
TGCTTAGTCACGCGATACCC+AGG - chr2_4:30975768-30975787 Msa0324940:intron 55.0%
TGAGGCTTGCGAAATCCTGC+TGG + chr2_4:30976504-30976523 Msa0324950:intron 55.0%
!! AGGCTTTGGAGCCAACACAG+AGG - chr2_4:30978085-30978104 Msa0324940:intron 55.0%
!! GGCTTTGGAGCCAACACAGA+GGG - chr2_4:30978086-30978105 Msa0324940:intron 55.0%
! CTGGGCTGGGTCAGAATTTG+GGG - chr2_4:30978650-30978669 Msa0324940:intron 55.0%
GCCTACGGGAAGATTGGAGA+TGG - chr2_4:30979031-30979050 Msa0324940:intron 55.0%
CGACCCACCTCTGCTACATG+AGG + chr2_4:30972922-30972941 None:intergenic 60.0%
GTTTATCTGCGCAGGGCGGC+TGG - chr2_4:30973420-30973439 Msa0324940:CDS 65.0%
TATCTGCGCAGGGCGGCTGG+TGG - chr2_4:30973423-30973442 Msa0324940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 30972330 30979772 30972330 ID=Msa0324940;Name=Msa0324940
chr2_4 mRNA 30972330 30979772 30972330 ID=Msa0324940-mRNA-1;Parent=Msa0324940;Name=Msa0324940-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.88|0.75|0.66|9|0|253
chr2_4 exon 30979768 30979772 30979768 ID=Msa0324940-mRNA-1:exon:10363;Parent=Msa0324940-mRNA-1
chr2_4 exon 30979350 30979443 30979350 ID=Msa0324940-mRNA-1:exon:10362;Parent=Msa0324940-mRNA-1
chr2_4 exon 30979169 30979249 30979169 ID=Msa0324940-mRNA-1:exon:10361;Parent=Msa0324940-mRNA-1
chr2_4 exon 30978749 30978915 30978749 ID=Msa0324940-mRNA-1:exon:10360;Parent=Msa0324940-mRNA-1
chr2_4 exon 30978610 30978668 30978610 ID=Msa0324940-mRNA-1:exon:10359;Parent=Msa0324940-mRNA-1
chr2_4 exon 30973376 30973461 30973376 ID=Msa0324940-mRNA-1:exon:10358;Parent=Msa0324940-mRNA-1
chr2_4 exon 30972876 30972953 30972876 ID=Msa0324940-mRNA-1:exon:10357;Parent=Msa0324940-mRNA-1
chr2_4 exon 30972667 30972792 30972667 ID=Msa0324940-mRNA-1:exon:10356;Parent=Msa0324940-mRNA-1
chr2_4 exon 30972330 30972395 30972330 ID=Msa0324940-mRNA-1:exon:10355;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30979768 30979772 30979768 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30979350 30979443 30979350 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30979169 30979249 30979169 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30978749 30978915 30978749 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30978610 30978668 30978610 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30973376 30973461 30973376 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30972876 30972953 30972876 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30972667 30972792 30972667 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
chr2_4 CDS 30972330 30972395 30972330 ID=Msa0324940-mRNA-1:cds;Parent=Msa0324940-mRNA-1
Gene Sequence

>Msa0324940

ATGATGAAGCTACGGTATTTCACAAGTTTCTCGAGCTTAATGGAGAAGAAAGAATCCAATCCATTTGGCAGACCTTACAATTTCTCGGCGCCGCTAGATCAAACTCCAAATATTGCACTACTTCAATGTGATGCTGTACATGATCCCATAGAGCTCTCCTATAATCCTCATGTAGCAGAGGATGCTGCACTGGCCTTTTCAGAAATGGTACGCAGAAGAAACCCAGATTTCAACAAATTATTTGCTAGAAACTCAGAGCCTGTTTTAAGTTTAATTACTGGTGAATCGAGAGAATATGCCAACCAGTCTTCTGCATCAAAACATAATAGGGATGGAACTTCAATGAGGGCGGCTGGTGGAAGTAAGAGATCAACAGATGGAGATCAAGATGATAGTAACAAAGTACAAAATCCATCTGGGCTGGGTCAGAATTTGGGGACAGTTGTTAAGGAATCTGACACTGACATTGATCTTGATGCTCAACTAAAACTGGAAGCTGATGAAATAAGAAAAGAAAGAAAAAGGCTGTCAAACAGGAAATCGGCTAAAAGATCAAAGATAAGGAAACAGAAAGAATGTGAAGAGCTATGTCAAAAGATAGACACTCTTAAAGATGAAAATGCCGTCCTAACACAAACACTCGCTGAGCTTTCTAGGAAATGTCTGGAGCTCACCAATGAAAACAATTCTATTGTGGAAGAGCTAGTTAAAGAGTATGGACCAGAATTGGTTGCAGATCTATTGCACATGAAGCCTACTTGA

Protein sequence

>Msa0324940

MMKLRYFTSFSSLMEKKESNPFGRPYNFSAPLDQTPNIALLQCDAVHDPIELSYNPHVAEDAALAFSEMVRRRNPDFNKLFARNSEPVLSLITGESREYANQSSASKHNRDGTSMRAAGGSKRSTDGDQDDSNKVQNPSGLGQNLGTVVKESDTDIDLDAQLKLEADEIRKERKRLSNRKSAKRSKIRKQKECEELCQKIDTLKDENAVLTQTLAELSRKCLELTNENNSIVEELVKEYGPELVADLLHMKPT*