Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325200 | XP_013465039.1 | 91.489 | 235 | 11 | 1 | 1 | 226 | 1 | 235 | 6.79e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325200 | sp|Q8GZA8|ULT1_ARATH | 64.957 | 234 | 73 | 1 | 2 | 226 | 3 | 236 | 3.21e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0325200 | TF | ULT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325200 | MtrunA17_Chr2g0323881 | 91.489 | 235 | 11 | 1 | 1 | 226 | 1 | 235 | 6.24e-159 | 439 |
| Msa0325200 | MtrunA17_Chr4g0022491 | 72.766 | 235 | 55 | 1 | 1 | 226 | 4 | 238 | 1.45e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325200 | AT4G28190.1 | 64.957 | 234 | 73 | 1 | 2 | 226 | 3 | 236 | 3.26e-111 | 319 |
| Msa0325200 | AT4G28190.2 | 57.358 | 265 | 73 | 1 | 2 | 226 | 3 | 267 | 5.33e-106 | 306 |
| Msa0325200 | AT2G20825.1 | 63.362 | 232 | 69 | 3 | 5 | 226 | 1 | 226 | 9.06e-104 | 300 |
Find 50 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTTAGCTGATCCTAAT+TGG | 0.234644 | 2_4:-31703625 | Msa0325200:CDS |
| GGAAATGGAAGAACAATATC+TGG | 0.257147 | 2_4:-31703850 | Msa0325200:CDS |
| ATTGATGGAGTGAAGAAAAT+TGG | 0.281708 | 2_4:-31704891 | Msa0325200:CDS |
| AGATCGGAACATTTCCAATT+AGG | 0.291460 | 2_4:+31703611 | None:intergenic |
| GTGGCACGCCTGCCCATTAT+TGG | 0.300408 | 2_4:+31703733 | None:intergenic |
| GGTTCCCACAAATCCAATAA+TGG | 0.313909 | 2_4:-31703746 | Msa0325200:CDS |
| GCTGCGTTTGAGAAACATTC+TGG | 0.316093 | 2_4:-31703887 | Msa0325200:CDS |
| ACAAGAAGTGCAACCTTTGC+AGG | 0.345352 | 2_4:+31702594 | None:intergenic |
| TGCACTTCTTGTGTGTGCTT+TGG | 0.357522 | 2_4:-31702583 | Msa0325200:CDS |
| CATGATATGAACTCAATCTT+TGG | 0.366356 | 2_4:+31702498 | None:intergenic |
| TTGCACTTGCCAGACTTGTA+TGG | 0.394373 | 2_4:-31702536 | Msa0325200:CDS |
| CCTGCCCATTATTGGATTTG+TGG | 0.412539 | 2_4:+31703741 | None:intergenic |
| GTGATGTTGTTGGAAGGCTT+AGG | 0.417335 | 2_4:-31704824 | Msa0325200:CDS |
| GAAGAGAAACAACTAGGAAA+TGG | 0.418849 | 2_4:-31703865 | Msa0325200:CDS |
| CATATATACGGTGATGTTGT+TGG | 0.419440 | 2_4:-31704834 | Msa0325200:CDS |
| TGTTCAGTGATGAAGAGTTA+AGG | 0.424542 | 2_4:-31704917 | Msa0325200:CDS |
| GACATTCCTCTTTAGTTCTC+AGG | 0.425086 | 2_4:+31703660 | None:intergenic |
| GTTCCCACAAATCCAATAAT+GGG | 0.426469 | 2_4:-31703745 | Msa0325200:CDS |
| CTGCCCATTATTGGATTTGT+GGG | 0.429490 | 2_4:+31703742 | None:intergenic |
| TGATGTTGTTGGAAGGCTTA+GGG | 0.433847 | 2_4:-31704823 | Msa0325200:CDS |
| TTTGATAGAAAATGTCAAAC+GGG | 0.447762 | 2_4:-31704965 | None:intergenic |
| GTTCAGTGATGAAGAGTTAA+GGG | 0.457322 | 2_4:-31704916 | Msa0325200:CDS |
| GAAGAGTTAAGGGATATTGA+TGG | 0.458252 | 2_4:-31704906 | Msa0325200:CDS |
| GATTGAACATACTTGTCATA+TGG | 0.463333 | 2_4:+31703587 | None:intergenic |
| TTGTAAAGTCCATACAAGTC+TGG | 0.482167 | 2_4:+31702527 | None:intergenic |
| ATTGGATTTGTGGGAACCAT+TGG | 0.483851 | 2_4:+31703751 | None:intergenic |
| GGTTGTACTAGTCATATATA+CGG | 0.502591 | 2_4:-31704846 | Msa0325200:CDS |
| AGACTTGTATGGACTTTACA+AGG | 0.505964 | 2_4:-31702525 | Msa0325200:CDS |
| GAATGTTTCTCAAACGCAGC+AGG | 0.520755 | 2_4:+31703890 | None:intergenic |
| AACGGGTTAGAGAGAGAAAG+TGG | 0.529218 | 2_4:-31704948 | Msa0325200:CDS |
| AATATCTGGGTAACAGTTGA+CGG | 0.535992 | 2_4:-31703836 | Msa0325200:CDS |
| CCACAAATCCAATAATGGGC+AGG | 0.543451 | 2_4:-31703741 | Msa0325200:CDS |
| TGTGATGATGAAGAAGAAAG+AGG | 0.552017 | 2_4:-31702655 | Msa0325200:CDS |
| ACTCATTCTGCAGCCTGCAA+AGG | 0.562795 | 2_4:-31702607 | Msa0325200:CDS |
| CAGCTAAAGCATCATGGTGA+CGG | 0.575142 | 2_4:+31703636 | None:intergenic |
| GAAATGGAAGAACAATATCT+GGG | 0.577525 | 2_4:-31703849 | Msa0325200:CDS |
| GTTCCGCCTGAGAACTAAAG+AGG | 0.578750 | 2_4:-31703666 | Msa0325200:CDS |
| TATACGGTGATGTTGTTGGA+AGG | 0.580862 | 2_4:-31704830 | Msa0325200:CDS |
| ATACTTGTCATATGGAAGAT+CGG | 0.592135 | 2_4:+31703595 | None:intergenic |
| TAACTCTTCATCACTGAACA+TGG | 0.592135 | 2_4:+31704920 | None:intergenic |
| TAGGATCAGCTAAAGCATCA+TGG | 0.594494 | 2_4:+31703630 | None:intergenic |
| GGTAACAGTTGACGGCGAGA+AGG | 0.623616 | 2_4:-31703828 | Msa0325200:CDS |
| ATTCTGGAAGAGAAACAACT+AGG | 0.630683 | 2_4:-31703871 | Msa0325200:CDS |
| TACAGCAGATAAACTCGTCA+CGG | 0.635905 | 2_4:+31703711 | None:intergenic |
| CTAGATGTAACAAAGAGCGC+AGG | 0.644243 | 2_4:-31703688 | Msa0325200:CDS |
| ATTCCTCTTTAGTTCTCAGG+CGG | 0.652096 | 2_4:+31703663 | None:intergenic |
| GGCAGTCGCAGAGTTTACAG+AGG | 0.678401 | 2_4:-31702634 | Msa0325200:CDS |
| GAATGTATTGAAGTTATGTG+TGG | 0.706126 | 2_4:-31704867 | Msa0325200:CDS |
| ACGGGTTAGAGAGAGAAAGT+GGG | 0.717955 | 2_4:-31704947 | Msa0325200:CDS |
| AGCAGATAAACTCGTCACGG+TGG | 0.722161 | 2_4:+31703714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTCTTATTATTAAAAA+TGG | - | chr2_4:31702881-31702900 | Msa0325200:intron | 10.0% |
| !! | ATTCTCTTATTATTAAAAAT+GGG | - | chr2_4:31702882-31702901 | Msa0325200:intron | 10.0% |
| !! | TAAAAATCATAATGAAAATT+AGG | + | chr2_4:31703535-31703554 | None:intergenic | 10.0% |
| !! | TTATCTATAAATTTATGTAT+TGG | - | chr2_4:31703988-31704007 | Msa0325200:intron | 10.0% |
| !! | TTCTCTTATTATTAAAAATG+GGG | - | chr2_4:31702883-31702902 | Msa0325200:intron | 15.0% |
| !! | GAGATATAATAGATAGAAAA+AGG | + | chr2_4:31702726-31702745 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTCATTTGATAT+TGG | - | chr2_4:31702977-31702996 | Msa0325200:intron | 20.0% |
| !! | TGAAGGTAAATAATTAAACT+TGG | + | chr2_4:31703446-31703465 | None:intergenic | 20.0% |
| !! | CAAAAATTATCACAAGATAA+GGG | + | chr2_4:31703947-31703966 | None:intergenic | 20.0% |
| !! | ACAAAAATTATCACAAGATA+AGG | + | chr2_4:31703948-31703967 | None:intergenic | 20.0% |
| !! | ATAGATAAACAAAAGTTACT+TGG | + | chr2_4:31703976-31703995 | None:intergenic | 20.0% |
| !! | CTATAAATTTATGTATTGGA+AGG | - | chr2_4:31703992-31704011 | Msa0325200:intron | 20.0% |
| !! | GATTTAGTGATATAAATGTA+TGG | + | chr2_4:31704074-31704093 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTTGCCATTT+AGG | + | chr2_4:31704606-31704625 | None:intergenic | 20.0% |
| ! | ATTTGTCAAAGTGAAAACTT+TGG | - | chr2_4:31703109-31703128 | Msa0325200:intron | 25.0% |
| !! | AAAGTCAATGAAATCTGTTT+TGG | - | chr2_4:31703227-31703246 | Msa0325200:intron | 25.0% |
| ! | GAAACAAGTTATAATTCACT+TGG | + | chr2_4:31703424-31703443 | None:intergenic | 25.0% |
| !!! | AGCATTTTGATTCAAAATGA+AGG | + | chr2_4:31703463-31703482 | None:intergenic | 25.0% |
| !! | GTAGAACTGTTTTATACAAT+GGG | + | chr2_4:31703663-31703682 | None:intergenic | 25.0% |
| !! | AGTAGAACTGTTTTATACAA+TGG | + | chr2_4:31703664-31703683 | None:intergenic | 25.0% |
| !! | ATTGCATTTTGAATCCTAAA+TGG | - | chr2_4:31704589-31704608 | Msa0325200:intron | 25.0% |
| !!! | GCTTTTCAACTTTTTTACAA+TGG | - | chr2_4:31704718-31704737 | Msa0325200:intron | 25.0% |
| ATTGATGGAGTGAAGAAAAT+TGG | - | chr2_4:31702573-31702592 | Msa0325200:CDS | 30.0% | |
| GAATGTATTGAAGTTATGTG+TGG | - | chr2_4:31702597-31702616 | Msa0325200:CDS | 30.0% | |
| GGTTGTACTAGTCATATATA+CGG | - | chr2_4:31702618-31702637 | Msa0325200:CDS | 30.0% | |
| ATTACATGATTCTAGACAAG+TGG | - | chr2_4:31703134-31703153 | Msa0325200:intron | 30.0% | |
| !!! | TAGCATGTTATGTTGACTTT+TGG | - | chr2_4:31703197-31703216 | Msa0325200:intron | 30.0% |
| !!! | CTGTTTTGGTTTGTTATGTA+CGG | - | chr2_4:31703241-31703260 | Msa0325200:intron | 30.0% |
| TAAAGCAATTCTGTAATCTG+TGG | + | chr2_4:31703294-31703313 | None:intergenic | 30.0% | |
| TTGCTTTAATTCTTACGTTG+TGG | - | chr2_4:31703306-31703325 | Msa0325200:intron | 30.0% | |
| GATAGAGGGAAATATAAACA+TGG | + | chr2_4:31703348-31703367 | None:intergenic | 30.0% | |
| ! | ACTAGCTTAAAACAGATAGA+GGG | + | chr2_4:31703362-31703381 | None:intergenic | 30.0% |
| ! | AACTAGCTTAAAACAGATAG+AGG | + | chr2_4:31703363-31703382 | None:intergenic | 30.0% |
| GAAATGGAAGAACAATATCT+GGG | - | chr2_4:31703615-31703634 | Msa0325200:CDS | 30.0% | |
| ATACTTGTCATATGGAAGAT+CGG | + | chr2_4:31703872-31703891 | None:intergenic | 30.0% | |
| GATTGAACATACTTGTCATA+TGG | + | chr2_4:31703880-31703899 | None:intergenic | 30.0% | |
| AAGTATGTTCAATCTGTTGT+AGG | - | chr2_4:31703886-31703905 | Msa0325200:CDS | 30.0% | |
| ATTTATGTATTGGAAGGCAA+TGG | - | chr2_4:31703998-31704017 | Msa0325200:intron | 30.0% | |
| !!! | ACTACTACTTTTTTAAAGGC+AGG | + | chr2_4:31704308-31704327 | None:intergenic | 30.0% |
| ! | GCCTTTAAAAAAGTAGTAGT+CGG | - | chr2_4:31704308-31704327 | Msa0325200:intron | 30.0% |
| !!! | ACCGACTACTACTTTTTTAA+AGG | + | chr2_4:31704312-31704331 | None:intergenic | 30.0% |
| !!! | TTATGTTGTTTTGCTATGCA+TGG | - | chr2_4:31704351-31704370 | Msa0325200:intron | 30.0% |
| GTTACATTACCTATTATGCA+TGG | - | chr2_4:31704403-31704422 | Msa0325200:intron | 30.0% | |
| TTAAATCAGCCATGCATAAT+AGG | + | chr2_4:31704415-31704434 | None:intergenic | 30.0% | |
| ! | ATGGCTGATTTAAATATGCA+TGG | - | chr2_4:31704422-31704441 | Msa0325200:intron | 30.0% |
| CAAATTCGGACAAACATAAA+AGG | + | chr2_4:31704487-31704506 | None:intergenic | 30.0% | |
| GTGAGACATCTAAACAAATT+CGG | + | chr2_4:31704501-31704520 | None:intergenic | 30.0% | |
| AGTTTAGATGTCTCACTTTA+CGG | - | chr2_4:31704547-31704566 | Msa0325200:intron | 30.0% | |
| TCTGTATAGAAGATTCAAGT+TGG | - | chr2_4:31704632-31704651 | Msa0325200:intron | 30.0% | |
| ! | CTGTATAGAAGATTCAAGTT+GGG | - | chr2_4:31704633-31704652 | Msa0325200:intron | 30.0% |
| !! | TGTATAGAAGATTCAAGTTG+GGG | - | chr2_4:31704634-31704653 | Msa0325200:intron | 30.0% |
| TAACTCTTCATCACTGAACA+TGG | + | chr2_4:31702547-31702566 | None:intergenic | 35.0% | |
| TGTTCAGTGATGAAGAGTTA+AGG | - | chr2_4:31702547-31702566 | Msa0325200:CDS | 35.0% | |
| GTTCAGTGATGAAGAGTTAA+GGG | - | chr2_4:31702548-31702567 | Msa0325200:CDS | 35.0% | |
| GAAGAGTTAAGGGATATTGA+TGG | - | chr2_4:31702558-31702577 | Msa0325200:CDS | 35.0% | |
| CATATATACGGTGATGTTGT+TGG | - | chr2_4:31702630-31702649 | Msa0325200:CDS | 35.0% | |
| ! | AGGCTTAGGGTTTTTGTTAA+TGG | - | chr2_4:31702654-31702673 | Msa0325200:CDS | 35.0% |
| TGTTAGTGTAGTGTTAGTGT+CGG | + | chr2_4:31702795-31702814 | None:intergenic | 35.0% | |
| !!! | TGGATGGTTGTTTTAATGTG+TGG | - | chr2_4:31703018-31703037 | Msa0325200:intron | 35.0% |
| TATGAACTCTGTTGTGATGT+TGG | - | chr2_4:31703061-31703080 | Msa0325200:intron | 35.0% | |
| TTATGTACGGTACTACTCTA+AGG | - | chr2_4:31703254-31703273 | Msa0325200:intron | 35.0% | |
| ! | ATTCTGGAAGAGAAACAACT+AGG | - | chr2_4:31703593-31703612 | Msa0325200:intron | 35.0% |
| GAAGAGAAACAACTAGGAAA+TGG | - | chr2_4:31703599-31703618 | Msa0325200:CDS | 35.0% | |
| GGAAATGGAAGAACAATATC+TGG | - | chr2_4:31703614-31703633 | Msa0325200:CDS | 35.0% | |
| AATATCTGGGTAACAGTTGA+CGG | - | chr2_4:31703628-31703647 | Msa0325200:CDS | 35.0% | |
| CAAGCATTAAAAACAGCCAA+TGG | - | chr2_4:31703697-31703716 | Msa0325200:CDS | 35.0% | |
| GTTCCCACAAATCCAATAAT+GGG | - | chr2_4:31703719-31703738 | Msa0325200:CDS | 35.0% | |
| ATGCTTTAGCTGATCCTAAT+TGG | - | chr2_4:31703839-31703858 | Msa0325200:CDS | 35.0% | |
| AGATCGGAACATTTCCAATT+AGG | + | chr2_4:31703856-31703875 | None:intergenic | 35.0% | |
| ATTATCACAAGATAAGGGCT+AGG | + | chr2_4:31703942-31703961 | None:intergenic | 35.0% | |
| ATGTGGTCGAAGATATAACA+TGG | + | chr2_4:31704037-31704056 | None:intergenic | 35.0% | |
| TGTCTTGACAATGCAACTTT+GGG | - | chr2_4:31704211-31704230 | Msa0325200:intron | 35.0% | |
| ! | TTCATTGATTGCTGCATGAA+CGG | - | chr2_4:31704267-31704286 | Msa0325200:intron | 35.0% |
| GTATCGTGAAAGAACTATCA+CGG | - | chr2_4:31704453-31704472 | Msa0325200:intron | 35.0% | |
| ! | TGTGATGATGAAGAAGAAAG+AGG | - | chr2_4:31704809-31704828 | Msa0325200:CDS | 35.0% |
| TTGTAAAGTCCATACAAGTC+TGG | + | chr2_4:31704940-31704959 | None:intergenic | 35.0% | |
| AGACTTGTATGGACTTTACA+AGG | - | chr2_4:31704939-31704958 | Msa0325200:CDS | 35.0% | |
| TATACGGTGATGTTGTTGGA+AGG | - | chr2_4:31702634-31702653 | Msa0325200:CDS | 40.0% | |
| TGATGTTGTTGGAAGGCTTA+GGG | - | chr2_4:31702641-31702660 | Msa0325200:CDS | 40.0% | |
| ! | TCGAGTATGAGTGTTGTGTT+CGG | - | chr2_4:31702833-31702852 | Msa0325200:intron | 40.0% |
| TTGATATTGGCACGTGTCAT+TGG | - | chr2_4:31702990-31703009 | Msa0325200:intron | 40.0% | |
| AATTCTTACGTTGTGGCTAG+TGG | - | chr2_4:31703313-31703332 | Msa0325200:intron | 40.0% | |
| ATTGGATTTGTGGGAACCAT+TGG | + | chr2_4:31703716-31703735 | None:intergenic | 40.0% | |
| GGTTCCCACAAATCCAATAA+TGG | - | chr2_4:31703718-31703737 | Msa0325200:CDS | 40.0% | |
| CTGCCCATTATTGGATTTGT+GGG | + | chr2_4:31703725-31703744 | None:intergenic | 40.0% | |
| TACAGCAGATAAACTCGTCA+CGG | + | chr2_4:31703756-31703775 | None:intergenic | 40.0% | |
| !! | ATTCCTCTTTAGTTCTCAGG+CGG | + | chr2_4:31703804-31703823 | None:intergenic | 40.0% |
| !! | GACATTCCTCTTTAGTTCTC+AGG | + | chr2_4:31703807-31703826 | None:intergenic | 40.0% |
| ! | TAGGATCAGCTAAAGCATCA+TGG | + | chr2_4:31703837-31703856 | None:intergenic | 40.0% |
| TTGTCAAGACACGAAACTCT+AGG | + | chr2_4:31704202-31704221 | None:intergenic | 40.0% | |
| GTGTCTTGACAATGCAACTT+TGG | - | chr2_4:31704210-31704229 | Msa0325200:intron | 40.0% | |
| GTCTTGACAATGCAACTTTG+GGG | - | chr2_4:31704212-31704231 | Msa0325200:intron | 40.0% | |
| TTTAAAGGCAGGACCAAGAT+TGG | + | chr2_4:31704297-31704316 | None:intergenic | 40.0% | |
| TAACCGTGACAGTTCTTTCA+GGG | + | chr2_4:31704387-31704406 | None:intergenic | 40.0% | |
| GGCAAGTGCAATCTGAAAAA+CGG | + | chr2_4:31704919-31704938 | None:intergenic | 40.0% | |
| !! | AACGGGTTAGAGAGAGAAAG+TGG | - | chr2_4:31702516-31702535 | Msa0325200:CDS | 45.0% |
| !! | ACGGGTTAGAGAGAGAAAGT+GGG | - | chr2_4:31702517-31702536 | Msa0325200:CDS | 45.0% |
| GTGATGTTGTTGGAAGGCTT+AGG | - | chr2_4:31702640-31702659 | Msa0325200:CDS | 45.0% | |
| ATCACTTGTGAATGCATCCC+TGG | - | chr2_4:31702687-31702706 | Msa0325200:intron | 45.0% | |
| GAATGTTTCTCAAACGCAGC+AGG | + | chr2_4:31703577-31703596 | None:intergenic | 45.0% | |
| GCTGCGTTTGAGAAACATTC+TGG | - | chr2_4:31703577-31703596 | Msa0325200:intron | 45.0% | |
| CCTGCCCATTATTGGATTTG+TGG | + | chr2_4:31703726-31703745 | None:intergenic | 45.0% | |
| !! | CCACAAATCCAATAATGGGC+AGG | - | chr2_4:31703723-31703742 | Msa0325200:CDS | 45.0% |
| ! | CTAGATGTAACAAAGAGCGC+AGG | - | chr2_4:31703776-31703795 | Msa0325200:CDS | 45.0% |
| ! | CAGCTAAAGCATCATGGTGA+CGG | + | chr2_4:31703831-31703850 | None:intergenic | 45.0% |
| ACAAGATAAGGGCTAGGCAA+GGG | + | chr2_4:31703936-31703955 | None:intergenic | 45.0% | |
| CGACCACATTGTAGTAACTC+TGG | - | chr2_4:31704048-31704067 | Msa0325200:intron | 45.0% | |
| TGGCCAGAGTTACTACAATG+TGG | + | chr2_4:31704054-31704073 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | + | chr2_4:31704134-31704153 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr2_4:31704139-31704158 | None:intergenic | 45.0% |
| CATGAACGGTGTTCCAATCT+TGG | - | chr2_4:31704281-31704300 | Msa0325200:intron | 45.0% | |
| GTAACCGTGACAGTTCTTTC+AGG | + | chr2_4:31704388-31704407 | None:intergenic | 45.0% | |
| ! | ACAAGAAGTGCAACCTTTGC+AGG | + | chr2_4:31704873-31704892 | None:intergenic | 45.0% |
| TGCACTTCTTGTGTGTGCTT+TGG | - | chr2_4:31704881-31704900 | Msa0325200:CDS | 45.0% | |
| TTGCACTTGCCAGACTTGTA+TGG | - | chr2_4:31704928-31704947 | Msa0325200:CDS | 45.0% | |
| AAGGACCTTCTTCAGAGCCA+GGG | + | chr2_4:31702707-31702726 | None:intergenic | 50.0% | |
| AAAGGACCTTCTTCAGAGCC+AGG | + | chr2_4:31702708-31702727 | None:intergenic | 50.0% | |
| !! | TTCGGTGTCTGTGTCTGTGT+TGG | - | chr2_4:31702851-31702870 | Msa0325200:intron | 50.0% |
| ! | CGTGTCATTGGCACATTGGA+TGG | - | chr2_4:31703002-31703021 | Msa0325200:intron | 50.0% |
| GCAGGAGTCAACTTGTCTGT+TGG | + | chr2_4:31703559-31703578 | None:intergenic | 50.0% | |
| AGCAGATAAACTCGTCACGG+TGG | + | chr2_4:31703753-31703772 | None:intergenic | 50.0% | |
| GTTCCGCCTGAGAACTAAAG+AGG | - | chr2_4:31703798-31703817 | Msa0325200:CDS | 50.0% | |
| CACAAGATAAGGGCTAGGCA+AGG | + | chr2_4:31703937-31703956 | None:intergenic | 50.0% | |
| TGTTAGCCGATCCCACTTAG+TGG | - | chr2_4:31704125-31704144 | Msa0325200:intron | 50.0% | |
| GTTAGCCGATCCCACTTAGT+GGG | - | chr2_4:31704126-31704145 | Msa0325200:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | - | chr2_4:31704132-31704151 | Msa0325200:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr2_4:31704140-31704159 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr2_4:31704137-31704156 | Msa0325200:intron | 50.0% | |
| CAGCCCTGAAAGAACTGTCA+CGG | - | chr2_4:31704381-31704400 | Msa0325200:intron | 50.0% | |
| ACTCATTCTGCAGCCTGCAA+AGG | - | chr2_4:31704857-31704876 | Msa0325200:CDS | 50.0% | |
| !! | TGCATCCCTGGCTCTGAAGA+AGG | - | chr2_4:31702699-31702718 | Msa0325200:intron | 55.0% |
| ! | GGCACGTGTCATTGGCACAT+TGG | - | chr2_4:31702998-31703017 | Msa0325200:intron | 55.0% |
| GGTAACAGTTGACGGCGAGA+AGG | - | chr2_4:31703636-31703655 | Msa0325200:CDS | 55.0% | |
| GGCAGTCGCAGAGTTTACAG+AGG | - | chr2_4:31704830-31704849 | Msa0325200:CDS | 55.0% | |
| GTGGCACGCCTGCCCATTAT+TGG | + | chr2_4:31703734-31703753 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 31702510 | 31704976 | 31702510 | ID=Msa0325200;Name=Msa0325200 |
| chr2_4 | mRNA | 31702510 | 31704976 | 31702510 | ID=Msa0325200-mRNA-1;Parent=Msa0325200;Name=Msa0325200-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|3|0|227 |
| chr2_4 | exon | 31704793 | 31704976 | 31704793 | ID=Msa0325200-mRNA-1:exon:10524;Parent=Msa0325200-mRNA-1 |
| chr2_4 | exon | 31703599 | 31703923 | 31703599 | ID=Msa0325200-mRNA-1:exon:10523;Parent=Msa0325200-mRNA-1 |
| chr2_4 | exon | 31702510 | 31702684 | 31702510 | ID=Msa0325200-mRNA-1:exon:10522;Parent=Msa0325200-mRNA-1 |
| chr2_4 | CDS | 31704793 | 31704976 | 31704793 | ID=Msa0325200-mRNA-1:cds;Parent=Msa0325200-mRNA-1 |
| chr2_4 | CDS | 31703599 | 31703923 | 31703599 | ID=Msa0325200-mRNA-1:cds;Parent=Msa0325200-mRNA-1 |
| chr2_4 | CDS | 31702510 | 31702684 | 31702510 | ID=Msa0325200-mRNA-1:cds;Parent=Msa0325200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
