Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327080 | KEH38906.1 | 65.992 | 247 | 73 | 2 | 5 | 245 | 1 | 242 | 7.09e-105 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327080 | sp|Q1G3Q4|RITF1_ARATH | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.53e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0327080 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327080 | MtrunA17_Chr2g0320561 | 68.145 | 248 | 68 | 2 | 4 | 245 | 1 | 243 | 9.69e-107 | 308 |
| Msa0327080 | MtrunA17_Chr4g0020811 | 94.483 | 145 | 8 | 0 | 2 | 146 | 1 | 145 | 1.85e-102 | 294 |
| Msa0327080 | MtrunA17_Chr2g0308401 | 94.406 | 143 | 8 | 0 | 4 | 146 | 1 | 143 | 1.08e-100 | 289 |
| Msa0327080 | MtrunA17_Chr2g0320521 | 64.000 | 250 | 66 | 4 | 2 | 245 | 1 | 232 | 1.61e-98 | 287 |
| Msa0327080 | MtrunA17_Chr2g0320551 | 70.323 | 155 | 41 | 1 | 4 | 153 | 1 | 155 | 4.66e-75 | 225 |
| Msa0327080 | MtrunA17_Chr1g0179781 | 39.200 | 250 | 96 | 8 | 2 | 244 | 1 | 201 | 3.94e-46 | 152 |
| Msa0327080 | MtrunA17_Chr5g0395181 | 37.131 | 237 | 98 | 6 | 8 | 244 | 22 | 207 | 1.61e-43 | 146 |
| Msa0327080 | MtrunA17_Chr5g0411151 | 35.772 | 246 | 108 | 7 | 3 | 244 | 31 | 230 | 4.41e-43 | 145 |
| Msa0327080 | MtrunA17_Chr4g0040071 | 36.555 | 238 | 105 | 7 | 8 | 244 | 16 | 208 | 3.65e-42 | 142 |
| Msa0327080 | MtrunA17_Chr7g0265291 | 38.645 | 251 | 98 | 10 | 1 | 244 | 1 | 202 | 7.66e-42 | 141 |
| Msa0327080 | MtrunA17_Chr8g0366581 | 48.551 | 138 | 61 | 3 | 8 | 145 | 34 | 161 | 9.29e-40 | 137 |
| Msa0327080 | MtrunA17_Chr2g0297251 | 35.270 | 241 | 129 | 12 | 9 | 244 | 39 | 257 | 9.53e-28 | 106 |
| Msa0327080 | MtrunA17_Chr7g0230511 | 30.769 | 260 | 139 | 12 | 6 | 244 | 7 | 246 | 5.72e-24 | 96.3 |
| Msa0327080 | MtrunA17_Chr4g0065041 | 27.668 | 253 | 155 | 8 | 9 | 244 | 10 | 251 | 3.02e-19 | 84.0 |
| Msa0327080 | MtrunA17_Chr4g0052451 | 38.554 | 83 | 49 | 1 | 60 | 142 | 10 | 90 | 1.36e-12 | 62.0 |
| Msa0327080 | MtrunA17_Chr8g0392151 | 30.201 | 149 | 87 | 5 | 9 | 144 | 15 | 159 | 3.56e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327080 | AT1G43000.2 | 39.669 | 242 | 116 | 6 | 3 | 244 | 12 | 223 | 6.76e-49 | 160 |
| Msa0327080 | AT1G43000.1 | 39.669 | 242 | 116 | 6 | 3 | 244 | 5 | 216 | 8.68e-49 | 160 |
| Msa0327080 | AT1G21000.2 | 38.492 | 252 | 128 | 9 | 3 | 244 | 9 | 243 | 7.37e-44 | 148 |
| Msa0327080 | AT1G21000.1 | 38.492 | 252 | 128 | 9 | 3 | 244 | 12 | 246 | 8.26e-44 | 148 |
| Msa0327080 | AT1G32700.1 | 36.864 | 236 | 106 | 5 | 9 | 244 | 14 | 206 | 1.18e-40 | 139 |
| Msa0327080 | AT4G17900.1 | 50.360 | 139 | 58 | 4 | 8 | 145 | 35 | 163 | 1.65e-40 | 139 |
| Msa0327080 | AT4G17900.2 | 50.360 | 139 | 58 | 4 | 8 | 145 | 21 | 149 | 3.66e-40 | 138 |
| Msa0327080 | AT1G76590.1 | 35.628 | 247 | 129 | 9 | 8 | 244 | 19 | 245 | 5.36e-40 | 138 |
| Msa0327080 | AT2G27930.1 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.48e-35 | 124 |
| Msa0327080 | AT2G27930.4 | 47.857 | 140 | 67 | 3 | 9 | 145 | 6 | 142 | 2.48e-35 | 124 |
| Msa0327080 | AT2G27930.3 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.23e-35 | 123 |
| Msa0327080 | AT2G27930.2 | 48.175 | 137 | 65 | 3 | 9 | 142 | 6 | 139 | 7.23e-35 | 123 |
| Msa0327080 | AT1G32700.2 | 36.058 | 208 | 91 | 4 | 37 | 244 | 2 | 167 | 1.90e-32 | 117 |
| Msa0327080 | AT5G46710.3 | 33.891 | 239 | 112 | 9 | 9 | 244 | 14 | 209 | 4.88e-29 | 109 |
| Msa0327080 | AT5G46710.1 | 33.891 | 239 | 112 | 9 | 9 | 244 | 30 | 225 | 7.74e-29 | 108 |
| Msa0327080 | AT5G46710.2 | 42.222 | 135 | 67 | 4 | 9 | 142 | 30 | 154 | 5.30e-28 | 105 |
| Msa0327080 | AT1G31040.1 | 30.204 | 245 | 139 | 8 | 9 | 244 | 21 | 242 | 1.50e-26 | 103 |
| Msa0327080 | AT2G12646.1 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.65e-20 | 85.9 |
| Msa0327080 | AT2G12646.2 | 38.060 | 134 | 72 | 5 | 9 | 142 | 8 | 130 | 7.65e-20 | 85.9 |
| Msa0327080 | AT2G12646.3 | 38.060 | 134 | 72 | 5 | 9 | 142 | 5 | 127 | 8.15e-20 | 85.9 |
| Msa0327080 | AT3G60670.1 | 38.806 | 134 | 71 | 4 | 9 | 142 | 9 | 131 | 4.19e-19 | 83.6 |
| Msa0327080 | AT2G27930.5 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.30e-18 | 79.7 |
| Msa0327080 | AT2G27930.6 | 49.425 | 87 | 39 | 2 | 62 | 145 | 61 | 145 | 5.30e-18 | 79.7 |
| Msa0327080 | AT2G01818.1 | 29.752 | 242 | 133 | 9 | 9 | 245 | 13 | 222 | 1.72e-16 | 76.3 |
Find 31 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAAAGGAATACCTTAT+AGG | 0.254520 | 2_4:-38565644 | Msa0327080:CDS |
| TTACCAATCTTGTACCTCTT+AGG | 0.298690 | 2_4:+38566801 | None:intergenic |
| AAGAAAAGGAATACCTTATA+GGG | 0.333491 | 2_4:-38565643 | Msa0327080:CDS |
| TTTATGCAAGATCCACATAA+TGG | 0.340696 | 2_4:+38567143 | None:intergenic |
| CACAAAAGAGATGGAAGAAA+TGG | 0.353414 | 2_4:-38565898 | Msa0327080:CDS |
| GGAAGAGGAAGAAGAGCAAA+AGG | 0.388538 | 2_4:-38565754 | Msa0327080:CDS |
| AGGTACAAGATTGGTAAAAT+TGG | 0.400779 | 2_4:-38566795 | Msa0327080:CDS |
| CAACACTTACTTGGATTACT+CGG | 0.451223 | 2_4:+38567102 | None:intergenic |
| CAATCTTGTACCTCTTAGGT+TGG | 0.478301 | 2_4:+38566805 | None:intergenic |
| AAGTCCAATTCAAGAAGAAA+AGG | 0.488785 | 2_4:-38565657 | Msa0327080:CDS |
| AATCTTGTACCTCTTAGGTT+GGG | 0.514191 | 2_4:+38566806 | None:intergenic |
| TACAAGCATGTTGACATCCT+CGG | 0.515051 | 2_4:-38566888 | Msa0327080:CDS |
| TGCAATGGCAATCCATTATG+TGG | 0.515095 | 2_4:-38567155 | Msa0327080:CDS |
| GAGCTCGTGCCCAACCTAAG+AGG | 0.520699 | 2_4:-38566815 | Msa0327080:CDS |
| ATTGATGAAGAAAATGAAGA+GGG | 0.521661 | 2_4:-38565777 | Msa0327080:CDS |
| AAACGAAAACAAGGAGAAGC+AGG | 0.534783 | 2_4:-38565801 | Msa0327080:CDS |
| CAACCTAAGAGGTACAAGAT+TGG | 0.546024 | 2_4:-38566804 | Msa0327080:CDS |
| TTTCGTAAGCACAAAAGAGA+TGG | 0.552789 | 2_4:-38565907 | Msa0327080:CDS |
| AGGATATGATGTTGGTACCC+TGG | 0.557529 | 2_4:-38567271 | Msa0327080:CDS |
| GACATGCGATAGAAATCTTG+TGG | 0.559118 | 2_4:-38566748 | Msa0327080:CDS |
| ATTGCTGCATGAATCAATCA+AGG | 0.566797 | 2_4:-38565871 | Msa0327080:CDS |
| AATTGATGAAGAAAATGAAG+AGG | 0.587208 | 2_4:-38565778 | Msa0327080:CDS |
| AACATGCTTGTAAATTTCAG+TGG | 0.588826 | 2_4:+38566899 | None:intergenic |
| ATGGATTGCCATTGCAATCG+AGG | 0.594757 | 2_4:+38567162 | None:intergenic |
| CACAATCTGAAACGAAAACA+AGG | 0.595824 | 2_4:-38565810 | Msa0327080:CDS |
| TCACGTAGGTTTGAATTCCG+AGG | 0.612981 | 2_4:+38566871 | None:intergenic |
| TGATGAAGAAAATGAAGAGG+GGG | 0.616125 | 2_4:-38565775 | Msa0327080:CDS |
| AAGTTCTGCCTCGATTGCAA+TGG | 0.617127 | 2_4:-38567170 | Msa0327080:CDS |
| GCATGCCAAAGAGCAAAAGT+AGG | 0.621061 | 2_4:+38566719 | None:intergenic |
| TTGATGAAGAAAATGAAGAG+GGG | 0.641325 | 2_4:-38565776 | Msa0327080:CDS |
| AGTAGAGCTATTGATCACGT+AGG | 0.696424 | 2_4:+38566857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATCATTTTTTTTTACTT+TGG | - | chr2_4:38565989-38566008 | Msa0327080:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | chr2_4:38566388-38566407 | Msa0327080:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | chr2_4:38566418-38566437 | Msa0327080:intron | 10.0% |
| !!! | TTAATCATTTTTTTTTACTT+TGG | - | chr2_4:38565989-38566008 | Msa0327080:intron | 10.0% |
| !!! | ATATATTTTAAAATAGTGTT+TGG | - | chr2_4:38566388-38566407 | Msa0327080:intron | 10.0% |
| !!! | ATTGAGAATAATTTTTTTAT+TGG | - | chr2_4:38566418-38566437 | Msa0327080:intron | 10.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | chr2_4:38565694-38565713 | Msa0327080:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | chr2_4:38566035-38566054 | Msa0327080:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | chr2_4:38566824-38566843 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | chr2_4:38566871-38566890 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | chr2_4:38567045-38567064 | Msa0327080:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | chr2_4:38567049-38567068 | Msa0327080:intron | 15.0% |
| !!! | AATTTTTGTCTTTTTTTCTT+AGG | - | chr2_4:38565694-38565713 | Msa0327080:CDS | 15.0% |
| !! | TTGCAATTATAAATTAGATA+AGG | - | chr2_4:38566035-38566054 | Msa0327080:intron | 15.0% |
| !! | AATAAAAAGAAACTATCAAA+TGG | + | chr2_4:38566824-38566843 | None:intergenic | 15.0% |
| !!! | ATAAAAAGTACTAGTTTTTA+TGG | + | chr2_4:38566871-38566890 | None:intergenic | 15.0% |
| !! | CAAGTTTGAATATATAAAAA+AGG | - | chr2_4:38567045-38567064 | Msa0327080:intron | 15.0% |
| !! | TTTGAATATATAAAAAAGGA+GGG | - | chr2_4:38567049-38567068 | Msa0327080:intron | 15.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | chr2_4:38566028-38566047 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | chr2_4:38566029-38566048 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | chr2_4:38566467-38566486 | Msa0327080:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | chr2_4:38567048-38567067 | Msa0327080:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | chr2_4:38567148-38567167 | None:intergenic | 20.0% |
| !! | TTTATAATTGCAAGTATCAA+GGG | + | chr2_4:38566028-38566047 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCAAGTATCA+AGG | + | chr2_4:38566029-38566048 | None:intergenic | 20.0% |
| !!! | AGATTAGAATATATTTTCAC+TGG | - | chr2_4:38566467-38566486 | Msa0327080:intron | 20.0% |
| !! | GTTTGAATATATAAAAAAGG+AGG | - | chr2_4:38567048-38567067 | Msa0327080:intron | 20.0% |
| !!! | GATATTTTAGCTTTTTCTTT+TGG | + | chr2_4:38567148-38567167 | None:intergenic | 20.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | chr2_4:38565706-38565725 | Msa0327080:CDS | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | chr2_4:38566795-38566814 | Msa0327080:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | chr2_4:38566796-38566815 | Msa0327080:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | chr2_4:38566895-38566914 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | chr2_4:38566898-38566917 | Msa0327080:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | chr2_4:38566946-38566965 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | chr2_4:38567207-38567226 | Msa0327080:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | chr2_4:38567208-38567227 | Msa0327080:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | chr2_4:38567335-38567354 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | chr2_4:38567342-38567361 | Msa0327080:intron | 25.0% |
| !! | TTTTTCTTAGGATATGATGT+TGG | - | chr2_4:38565706-38565725 | Msa0327080:CDS | 25.0% |
| ! | AACTAGACAGAAAATTAGAA+TGG | - | chr2_4:38566795-38566814 | Msa0327080:CDS | 25.0% |
| ! | ACTAGACAGAAAATTAGAAT+GGG | - | chr2_4:38566796-38566815 | Msa0327080:CDS | 25.0% |
| ! | TTTGGATCAATAGAAATGAA+TGG | + | chr2_4:38566895-38566914 | None:intergenic | 25.0% |
| ! | ATTTCTATTGATCCAAACAT+TGG | - | chr2_4:38566898-38566917 | Msa0327080:CDS | 25.0% |
| !! | AATGAAAGAAAGAAAAGCAT+AGG | + | chr2_4:38566946-38566965 | None:intergenic | 25.0% |
| ! | AATTGATGAAGAAAATGAAG+AGG | - | chr2_4:38567207-38567226 | Msa0327080:CDS | 25.0% |
| ! | ATTGATGAAGAAAATGAAGA+GGG | - | chr2_4:38567208-38567227 | Msa0327080:CDS | 25.0% |
| !! | TATTCCTTTTCTTCTTGAAT+TGG | + | chr2_4:38567335-38567354 | None:intergenic | 25.0% |
| ! | AAGAAAAGGAATACCTTATA+GGG | - | chr2_4:38567342-38567361 | Msa0327080:intron | 25.0% |
| TTTATGCAAGATCCACATAA+TGG | + | chr2_4:38565845-38565864 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | chr2_4:38565895-38565914 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | chr2_4:38566089-38566108 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | chr2_4:38566190-38566209 | Msa0327080:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | chr2_4:38566307-38566326 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | chr2_4:38566794-38566813 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | chr2_4:38566913-38566932 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | chr2_4:38566911-38566930 | Msa0327080:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | chr2_4:38566971-38566990 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | chr2_4:38567052-38567071 | Msa0327080:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | chr2_4:38567209-38567228 | Msa0327080:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | chr2_4:38567250-38567269 | Msa0327080:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | chr2_4:38567328-38567347 | Msa0327080:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | chr2_4:38567341-38567360 | Msa0327080:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | chr2_4:38567358-38567377 | None:intergenic | 30.0% |
| TTTATGCAAGATCCACATAA+TGG | + | chr2_4:38565845-38565864 | None:intergenic | 30.0% | |
| CAAACTAAACAACACTTACT+TGG | + | chr2_4:38565895-38565914 | None:intergenic | 30.0% | |
| AACATGCTTGTAAATTTCAG+TGG | + | chr2_4:38566089-38566108 | None:intergenic | 30.0% | |
| AGGTACAAGATTGGTAAAAT+TGG | - | chr2_4:38566190-38566209 | Msa0327080:intron | 30.0% | |
| GAAAAAAAGAAGTGAGATTG+AGG | + | chr2_4:38566307-38566326 | None:intergenic | 30.0% | |
| !! | TCTAATTTTCTGTCTAGTTC+AGG | + | chr2_4:38566794-38566813 | None:intergenic | 30.0% |
| ! | CATTATTTTCCTCCAATGTT+TGG | + | chr2_4:38566913-38566932 | None:intergenic | 30.0% |
| CAAACATTGGAGGAAAATAA+TGG | - | chr2_4:38566911-38566930 | Msa0327080:CDS | 30.0% | |
| ! | AAATAACGAAAGTGCAACAA+TGG | + | chr2_4:38566971-38566990 | None:intergenic | 30.0% |
| GAATATATAAAAAAGGAGGG+AGG | - | chr2_4:38567052-38567071 | Msa0327080:intron | 30.0% | |
| TTGATGAAGAAAATGAAGAG+GGG | - | chr2_4:38567209-38567228 | Msa0327080:CDS | 30.0% | |
| AAGGAAGAAGAAAAAGAAGA+AGG | - | chr2_4:38567250-38567269 | Msa0327080:CDS | 30.0% | |
| AAGTCCAATTCAAGAAGAAA+AGG | - | chr2_4:38567328-38567347 | Msa0327080:intron | 30.0% | |
| GAAGAAAAGGAATACCTTAT+AGG | - | chr2_4:38567341-38567360 | Msa0327080:intron | 30.0% | |
| !! | TAAAAAAAAGGTGCCCTATA+AGG | + | chr2_4:38567358-38567377 | None:intergenic | 30.0% |
| !! | ACTCATTTTTCGACTCTCTT+GGG | + | chr2_4:38565790-38565809 | None:intergenic | 35.0% |
| CAACACTTACTTGGATTACT+CGG | + | chr2_4:38565886-38565905 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | chr2_4:38566182-38566201 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | chr2_4:38566187-38566206 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | chr2_4:38566261-38566280 | Msa0327080:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | chr2_4:38566788-38566807 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | chr2_4:38566901-38566920 | Msa0327080:CDS | 35.0% | |
| TTTCGTAAGCACAAAAGAGA+TGG | - | chr2_4:38567078-38567097 | Msa0327080:intron | 35.0% | |
| CACAAAAGAGATGGAAGAAA+TGG | - | chr2_4:38567087-38567106 | Msa0327080:intron | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | chr2_4:38567114-38567133 | Msa0327080:CDS | 35.0% | |
| ! | CACAATCTGAAACGAAAACA+AGG | - | chr2_4:38567175-38567194 | Msa0327080:CDS | 35.0% |
| TGATGAAGAAAATGAAGAGG+GGG | - | chr2_4:38567210-38567229 | Msa0327080:CDS | 35.0% | |
| !! | ACTCATTTTTCGACTCTCTT+GGG | + | chr2_4:38565790-38565809 | None:intergenic | 35.0% |
| CAACACTTACTTGGATTACT+CGG | + | chr2_4:38565886-38565905 | None:intergenic | 35.0% | |
| AATCTTGTACCTCTTAGGTT+GGG | + | chr2_4:38566182-38566201 | None:intergenic | 35.0% | |
| TTACCAATCTTGTACCTCTT+AGG | + | chr2_4:38566187-38566206 | None:intergenic | 35.0% | |
| !! | TTCTACCTACTTTTGCTCTT+TGG | - | chr2_4:38566261-38566280 | Msa0327080:intron | 35.0% |
| ! | TTTCTGTCTAGTTCAGGATT+AGG | + | chr2_4:38566788-38566807 | None:intergenic | 35.0% |
| TCTATTGATCCAAACATTGG+AGG | - | chr2_4:38566901-38566920 | Msa0327080:CDS | 35.0% | |
| TTTCGTAAGCACAAAAGAGA+TGG | - | chr2_4:38567078-38567097 | Msa0327080:intron | 35.0% | |
| CACAAAAGAGATGGAAGAAA+TGG | - | chr2_4:38567087-38567106 | Msa0327080:intron | 35.0% | |
| ATTGCTGCATGAATCAATCA+AGG | - | chr2_4:38567114-38567133 | Msa0327080:CDS | 35.0% | |
| ! | CACAATCTGAAACGAAAACA+AGG | - | chr2_4:38567175-38567194 | Msa0327080:CDS | 35.0% |
| TGATGAAGAAAATGAAGAGG+GGG | - | chr2_4:38567210-38567229 | Msa0327080:CDS | 35.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | chr2_4:38565730-38565749 | Msa0327080:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | chr2_4:38565734-38565753 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | chr2_4:38565735-38565754 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | chr2_4:38565791-38565810 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | chr2_4:38565830-38565849 | Msa0327080:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | chr2_4:38566097-38566116 | Msa0327080:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | chr2_4:38566131-38566150 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | chr2_4:38566183-38566202 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | chr2_4:38566181-38566200 | Msa0327080:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | chr2_4:38566237-38566256 | Msa0327080:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | chr2_4:38566281-38566300 | Msa0327080:intron | 40.0% | |
| AAACGAAAACAAGGAGAAGC+AGG | - | chr2_4:38567184-38567203 | Msa0327080:CDS | 40.0% | |
| ACCCTGGTTAGAAAAATTGC+TGG | - | chr2_4:38565730-38565749 | Msa0327080:CDS | 40.0% | |
| ! | GCCAGCAATTTTTCTAACCA+GGG | + | chr2_4:38565734-38565753 | None:intergenic | 40.0% |
| ! | TGCCAGCAATTTTTCTAACC+AGG | + | chr2_4:38565735-38565754 | None:intergenic | 40.0% |
| !! | CACTCATTTTTCGACTCTCT+TGG | + | chr2_4:38565791-38565810 | None:intergenic | 40.0% |
| TGCAATGGCAATCCATTATG+TGG | - | chr2_4:38565830-38565849 | Msa0327080:CDS | 40.0% | |
| TACAAGCATGTTGACATCCT+CGG | - | chr2_4:38566097-38566116 | Msa0327080:intron | 40.0% | |
| AGTAGAGCTATTGATCACGT+AGG | + | chr2_4:38566131-38566150 | None:intergenic | 40.0% | |
| CAATCTTGTACCTCTTAGGT+TGG | + | chr2_4:38566183-38566202 | None:intergenic | 40.0% | |
| ! | CAACCTAAGAGGTACAAGAT+TGG | - | chr2_4:38566181-38566200 | Msa0327080:intron | 40.0% |
| GACATGCGATAGAAATCTTG+TGG | - | chr2_4:38566237-38566256 | Msa0327080:intron | 40.0% | |
| TGGCATGCAAGGTAAATTCT+TGG | - | chr2_4:38566281-38566300 | Msa0327080:intron | 40.0% | |
| AAACGAAAACAAGGAGAAGC+AGG | - | chr2_4:38567184-38567203 | Msa0327080:CDS | 40.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | chr2_4:38565714-38565733 | Msa0327080:CDS | 45.0% | |
| !! | CATTTTTCGACTCTCTTGGG+TGG | + | chr2_4:38565787-38565806 | None:intergenic | 45.0% |
| AAGTTCTGCCTCGATTGCAA+TGG | - | chr2_4:38565815-38565834 | Msa0327080:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | chr2_4:38565826-38565845 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | chr2_4:38566117-38566136 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | chr2_4:38566269-38566288 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_4:38566270-38566289 | Msa0327080:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | chr2_4:38566783-38566802 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | chr2_4:38567216-38567235 | Msa0327080:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | chr2_4:38567231-38567250 | Msa0327080:CDS | 45.0% | |
| AGGATATGATGTTGGTACCC+TGG | - | chr2_4:38565714-38565733 | Msa0327080:CDS | 45.0% | |
| !! | CATTTTTCGACTCTCTTGGG+TGG | + | chr2_4:38565787-38565806 | None:intergenic | 45.0% |
| AAGTTCTGCCTCGATTGCAA+TGG | - | chr2_4:38565815-38565834 | Msa0327080:CDS | 45.0% | |
| ! | ATGGATTGCCATTGCAATCG+AGG | + | chr2_4:38565826-38565845 | None:intergenic | 45.0% |
| TCACGTAGGTTTGAATTCCG+AGG | + | chr2_4:38566117-38566136 | None:intergenic | 45.0% | |
| GCATGCCAAAGAGCAAAAGT+AGG | + | chr2_4:38566269-38566288 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTTTGGCATGCA+AGG | - | chr2_4:38566270-38566289 | Msa0327080:intron | 45.0% |
| ! | GTCTAGTTCAGGATTAGGAC+TGG | + | chr2_4:38566783-38566802 | None:intergenic | 45.0% |
| AGAAAATGAAGAGGGGGAAG+AGG | - | chr2_4:38567216-38567235 | Msa0327080:CDS | 45.0% | |
| GGAAGAGGAAGAAGAGCAAA+AGG | - | chr2_4:38567231-38567250 | Msa0327080:CDS | 45.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | chr2_4:38566170-38566189 | Msa0327080:intron | 60.0% | |
| GAGCTCGTGCCCAACCTAAG+AGG | - | chr2_4:38566170-38566189 | Msa0327080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38565629 | 38567378 | 38565629 | ID=Msa0327080;Name=Msa0327080 |
| chr2_4 | mRNA | 38565629 | 38567378 | 38565629 | ID=Msa0327080-mRNA-1;Parent=Msa0327080;Name=Msa0327080-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|0.66|0.75|4|0|245 |
| chr2_4 | exon | 38567373 | 38567378 | 38567373 | ID=Msa0327080-mRNA-1:exon:11561;Parent=Msa0327080-mRNA-1 |
| chr2_4 | exon | 38567112 | 38567291 | 38567112 | ID=Msa0327080-mRNA-1:exon:11560;Parent=Msa0327080-mRNA-1 |
| chr2_4 | exon | 38566716 | 38566955 | 38566716 | ID=Msa0327080-mRNA-1:exon:11559;Parent=Msa0327080-mRNA-1 |
| chr2_4 | exon | 38565629 | 38565940 | 38565629 | ID=Msa0327080-mRNA-1:exon:11558;Parent=Msa0327080-mRNA-1 |
| chr2_4 | CDS | 38567373 | 38567378 | 38567373 | ID=Msa0327080-mRNA-1:cds;Parent=Msa0327080-mRNA-1 |
| chr2_4 | CDS | 38567112 | 38567291 | 38567112 | ID=Msa0327080-mRNA-1:cds;Parent=Msa0327080-mRNA-1 |
| chr2_4 | CDS | 38566716 | 38566955 | 38566716 | ID=Msa0327080-mRNA-1:cds;Parent=Msa0327080-mRNA-1 |
| chr2_4 | CDS | 38565629 | 38565940 | 38565629 | ID=Msa0327080-mRNA-1:cds;Parent=Msa0327080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
