Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327230 | XP_039682845.1 | 92.000 | 150 | 12 | 0 | 102 | 251 | 1 | 150 | 5.57e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0327230 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327230 | MtrunA17_Chr2g0289081 | 73.451 | 113 | 27 | 2 | 91 | 200 | 8 | 120 | 4.87e-49 | 158 |
| Msa0327230 | MtrunA17_Chr1g0198761 | 35.256 | 156 | 79 | 8 | 116 | 251 | 17 | 170 | 9.89e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTAAAACCTTCTTTCT+TGG | 0.184975 | 2_4:-38904949 | None:intergenic |
| TATTTGTCCTATTGTTGATA+TGG | 0.229024 | 2_4:+38904881 | Msa0327230:CDS |
| TCTTGACTTATTTGCATTCC+TGG | 0.236917 | 2_4:-38903069 | None:intergenic |
| TCACTGTTAACTTCTCTTCT+AGG | 0.257651 | 2_4:-38902839 | None:intergenic |
| AAGCAGGGAAGAGAAGTAAA+TGG | 0.304863 | 2_4:+38905114 | Msa0327230:CDS |
| AGCAGATTGGCCACACTCTT+AGG | 0.344272 | 2_4:-38905182 | None:intergenic |
| TTTACAAGTTCCGAGTAGTT+TGG | 0.366365 | 2_4:-38902969 | None:intergenic |
| CTTGACTTATTTGCATTCCT+GGG | 0.400269 | 2_4:-38903068 | None:intergenic |
| TCAAATTCCATATCAACAAT+AGG | 0.427064 | 2_4:-38904888 | None:intergenic |
| GAAGGTACACATATAGTAAA+GGG | 0.439216 | 2_4:+38905020 | Msa0327230:CDS |
| TCACTTACTGTTTCAAAAGC+AGG | 0.452498 | 2_4:+38905098 | Msa0327230:CDS |
| ACATCGTTTGCCAAGAAAGA+AGG | 0.462978 | 2_4:+38904939 | Msa0327230:CDS |
| AAGAAAGGAACTTGGGTTGA+AGG | 0.471139 | 2_4:+38903088 | Msa0327230:CDS |
| ATAAACAATGTTCACAATCA+TGG | 0.474196 | 2_4:+38905149 | Msa0327230:CDS |
| AATATTAGCTTCAGGTGACT+TGG | 0.474696 | 2_4:-38904862 | None:intergenic |
| TTATTCGGGTTAAAAGAGAA+TGG | 0.478178 | 2_4:+38902882 | Msa0327230:CDS |
| ATAGGACAAATATTAGCTTC+AGG | 0.478911 | 2_4:-38904870 | None:intergenic |
| GAGAATCGATTATGTTTAGC+AGG | 0.481467 | 2_4:-38902911 | None:intergenic |
| AGCAGGGAAGAGAAGTAAAT+GGG | 0.489503 | 2_4:+38905115 | Msa0327230:CDS |
| TGAAGGTACACATATAGTAA+AGG | 0.494494 | 2_4:+38905019 | Msa0327230:CDS |
| GTAAAGGGTGAAAATGAAGA+AGG | 0.507431 | 2_4:+38905035 | Msa0327230:CDS |
| GAGCAAGGACAAGGGATCCC+AGG | 0.520917 | 2_4:+38903051 | Msa0327230:CDS |
| CTAATTATGAGAAAGCAGAT+TGG | 0.522880 | 2_4:-38905195 | None:intergenic |
| AATAAGTCAAGAAAGGAACT+TGG | 0.534929 | 2_4:+38903080 | Msa0327230:CDS |
| TGCTTTACAATCAGTTCTTG+AGG | 0.537334 | 2_4:-38905075 | None:intergenic |
| CACTTACTGTTTCAAAAGCA+GGG | 0.542698 | 2_4:+38905099 | Msa0327230:CDS |
| GAATGCAAATAAGTCAAGAA+AGG | 0.543821 | 2_4:+38903073 | Msa0327230:CDS |
| AACTCATAAGAGCAAGGACA+AGG | 0.546788 | 2_4:+38903042 | Msa0327230:CDS |
| GTACATGGATAATGAGTATG+TGG | 0.550566 | 2_4:+38904758 | Msa0327230:CDS |
| TAAAGGGTGAAAATGAAGAA+GGG | 0.554329 | 2_4:+38905036 | Msa0327230:CDS |
| CAATGTTCACAATCATGGAA+TGG | 0.570975 | 2_4:+38905154 | Msa0327230:CDS |
| AATCGATTATGTTTAGCAGG+TGG | 0.579440 | 2_4:-38902908 | None:intergenic |
| ACACATCATCAACTATCTCA+TGG | 0.582009 | 2_4:-38904809 | None:intergenic |
| ATAAGTCAAGAAAGGAACTT+GGG | 0.594482 | 2_4:+38903081 | Msa0327230:CDS |
| TATGGAATTTGACTCCATTG+TGG | 0.618496 | 2_4:+38904899 | Msa0327230:CDS |
| ATGAAGAACTCATAAGAGCA+AGG | 0.637895 | 2_4:+38903036 | Msa0327230:CDS |
| GTTAAACAATCCAAACTACT+CGG | 0.642167 | 2_4:+38902959 | Msa0327230:CDS |
| ATGCTTGTATGCGCTAATGA+AGG | 0.648792 | 2_4:+38905002 | Msa0327230:CDS |
| ACTCATAAGAGCAAGGACAA+GGG | 0.674480 | 2_4:+38903043 | Msa0327230:CDS |
| AATGGTTAGTCCTAAGAGTG+TGG | 0.676645 | 2_4:+38905172 | Msa0327230:CDS |
| GATTGATATAGTGATGCCAC+TGG | 0.678540 | 2_4:-38902935 | None:intergenic |
| ACATAATCGATTCTCACCAG+TGG | 0.684055 | 2_4:+38902919 | Msa0327230:CDS |
| TAGAAGAGAAGTTAACAGTG+AGG | 0.712556 | 2_4:+38902841 | Msa0327230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATAATAATA+TGG | - | chr2_4:38904653-38904672 | None:intergenic | 0.0% |
| !!! | AATTTTTCTTTATTCAAAAT+TGG | + | chr2_4:38902586-38902605 | Msa0327230:intron | 10.0% |
| !!! | ATTTTTCTTTATTCAAAATT+GGG | + | chr2_4:38902587-38902606 | Msa0327230:intron | 10.0% |
| !!! | AATAAGTAAAAAATATCTTT+TGG | - | chr2_4:38902867-38902886 | None:intergenic | 10.0% |
| !!! | AAAGATATTTTTTACTTATT+CGG | + | chr2_4:38902867-38902886 | Msa0327230:CDS | 10.0% |
| !!! | TTAAAAGAAATGTTATTTAT+CGG | + | chr2_4:38903420-38903439 | Msa0327230:intron | 10.0% |
| !!! | ATTTTTTTTTTATATCCTAT+AGG | + | chr2_4:38904736-38904755 | Msa0327230:intron | 10.0% |
| !!! | AAGATATTTTTTACTTATTC+GGG | + | chr2_4:38902868-38902887 | Msa0327230:CDS | 15.0% |
| !!! | ATGGATTATATATATATAAC+TGG | - | chr2_4:38903378-38903397 | None:intergenic | 15.0% |
| !!! | AATAAAATGATAATGTATGA+TGG | + | chr2_4:38903532-38903551 | Msa0327230:intron | 15.0% |
| !! | AGACAAATAAAAGAATATTA+TGG | - | chr2_4:38904556-38904575 | None:intergenic | 15.0% |
| !!! | CAATGAAAGTATTTAATTAT+GGG | - | chr2_4:38904606-38904625 | None:intergenic | 15.0% |
| !!! | ACAATGAAAGTATTTAATTA+TGG | - | chr2_4:38904607-38904626 | None:intergenic | 15.0% |
| !!! | AGAAAAATTTTAACTCCAAA+GGG | - | chr2_4:38902575-38902594 | None:intergenic | 20.0% |
| !!! | AAGAAAAATTTTAACTCCAA+AGG | - | chr2_4:38902576-38902595 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAAAGGTTGTTTT+CGG | - | chr2_4:38902704-38902723 | None:intergenic | 20.0% |
| !!! | TAGTGTAATTGATTTAACAA+TGG | - | chr2_4:38903397-38903416 | None:intergenic | 20.0% |
| !!! | TCAGTAGTTATTTTCTTAAT+TGG | + | chr2_4:38903735-38903754 | Msa0327230:intron | 20.0% |
| !! | ATTAAGAAAGAGAAAAAAGA+AGG | - | chr2_4:38903820-38903839 | None:intergenic | 20.0% |
| !! | AACTTTATGATTAATAGATC+TGG | - | chr2_4:38904237-38904256 | None:intergenic | 20.0% |
| !!! | CACAATGTTTACTTTTAAAA+AGG | + | chr2_4:38904257-38904276 | Msa0327230:intron | 20.0% |
| !!! | TACTTTTAAAAAGGAAACTT+AGG | + | chr2_4:38904266-38904285 | Msa0327230:intron | 20.0% |
| !! | ATAATAATAATAATATGGCG+TGG | - | chr2_4:38904648-38904667 | None:intergenic | 20.0% |
| !!! | AGTTTTTTGAGACAGAAATA+AGG | + | chr2_4:38903111-38903130 | Msa0327230:CDS | 25.0% |
| ! | TCAAAATTGCTTAAGGTATA+GGG | + | chr2_4:38903179-38903198 | Msa0327230:intron | 25.0% |
| ! | TAATTATAGTTCAACGTGTT+TGG | + | chr2_4:38903344-38903363 | Msa0327230:intron | 25.0% |
| !!! | TTATTTTCTTTTGACTCAAG+TGG | - | chr2_4:38903517-38903536 | None:intergenic | 25.0% |
| ! | CTGAATAATAACACCATAAA+CGG | - | chr2_4:38903719-38903738 | None:intergenic | 25.0% |
| ! | TAACTCATAAACCTTTCAAT+TGG | - | chr2_4:38903769-38903788 | None:intergenic | 25.0% |
| !! | TATATATATCCAAGCCTTTT+AGG | - | chr2_4:38904118-38904137 | None:intergenic | 25.0% |
| ! | TTATGATTAATAGATCTGGA+CGG | - | chr2_4:38904233-38904252 | None:intergenic | 25.0% |
| ! | ATTTAATTATGGGAGAAACA+TGG | - | chr2_4:38904596-38904615 | None:intergenic | 25.0% |
| ! | AATACTTTCATTGTTCATTG+AGG | + | chr2_4:38904613-38904632 | Msa0327230:intron | 25.0% |
| ! | TCATGAATACTCATTATTCA+TGG | + | chr2_4:38904705-38904724 | Msa0327230:intron | 25.0% |
| !! | TTTTATATCCTATAGGTACA+TGG | + | chr2_4:38904743-38904762 | Msa0327230:intron | 25.0% |
| !! | GACTTGGAATTTTCTAAATT+TGG | - | chr2_4:38904849-38904868 | None:intergenic | 25.0% |
| ! | TATTTGTCCTATTGTTGATA+TGG | + | chr2_4:38904881-38904900 | Msa0327230:CDS | 25.0% |
| ! | TCAAATTCCATATCAACAAT+AGG | - | chr2_4:38904891-38904910 | None:intergenic | 25.0% |
| ! | ATAAACAATGTTCACAATCA+TGG | + | chr2_4:38905149-38905168 | Msa0327230:CDS | 25.0% |
| TAAGCATAAGCATCTGATAA+CGG | + | chr2_4:38902171-38902190 | Msa0327230:intron | 30.0% | |
| TGTCTAATTGTCAACTTAGT+GGG | - | chr2_4:38902465-38902484 | None:intergenic | 30.0% | |
| TAATAACCGTAAGACAATGA+TGG | + | chr2_4:38902521-38902540 | Msa0327230:intron | 30.0% | |
| GAAAAACCATCATTGTCTTA+CGG | - | chr2_4:38902530-38902549 | None:intergenic | 30.0% | |
| TTCAAAATTGGGCATACAAA+AGG | + | chr2_4:38902598-38902617 | Msa0327230:intron | 30.0% | |
| !!! | CTAGGGTTACTTTTGAAAAA+AGG | - | chr2_4:38902714-38902733 | None:intergenic | 30.0% |
| TTGTGAAAGAAATCAACACT+TGG | - | chr2_4:38902801-38902820 | None:intergenic | 30.0% | |
| ! | TTATTCGGGTTAAAAGAGAA+TGG | + | chr2_4:38902882-38902901 | Msa0327230:CDS | 30.0% |
| GTTAAACAATCCAAACTACT+CGG | + | chr2_4:38902959-38902978 | Msa0327230:CDS | 30.0% | |
| !! | GGAACTTGTAAAGTACTTTT+AGG | + | chr2_4:38902980-38902999 | Msa0327230:intron | 30.0% |
| GAATGCAAATAAGTCAAGAA+AGG | + | chr2_4:38903073-38903092 | Msa0327230:CDS | 30.0% | |
| AATAAGTCAAGAAAGGAACT+TGG | + | chr2_4:38903080-38903099 | Msa0327230:CDS | 30.0% | |
| ATAAGTCAAGAAAGGAACTT+GGG | + | chr2_4:38903081-38903100 | Msa0327230:CDS | 30.0% | |
| !!! | CCTTAAGCAATTTTGAGATT+AGG | - | chr2_4:38903175-38903194 | None:intergenic | 30.0% |
| CCTAATCTCAAAATTGCTTA+AGG | + | chr2_4:38903172-38903191 | Msa0327230:intron | 30.0% | |
| CTCAAAATTGCTTAAGGTAT+AGG | + | chr2_4:38903178-38903197 | Msa0327230:intron | 30.0% | |
| ! | GAACTATTTTCGAATTGGTT+CGG | - | chr2_4:38903216-38903235 | None:intergenic | 30.0% |
| ! | TCAAGTTAATTTGACTCGTT+TGG | - | chr2_4:38903282-38903301 | None:intergenic | 30.0% |
| AAATCCAATAGAGAAAGAGA+TGG | + | chr2_4:38903491-38903510 | Msa0327230:intron | 30.0% | |
| AAAATGTTGACAGCAAACTA+AGG | + | chr2_4:38903568-38903587 | Msa0327230:intron | 30.0% | |
| GCCTATTTCCTTCTTTAATA+CGG | + | chr2_4:38903689-38903708 | Msa0327230:intron | 30.0% | |
| CCTATTTCCTTCTTTAATAC+GGG | + | chr2_4:38903690-38903709 | Msa0327230:intron | 30.0% | |
| !! | TGGTTTTTAGACCAATTGAA+AGG | + | chr2_4:38903755-38903774 | Msa0327230:intron | 30.0% |
| TAAACGAATTGAACTTGAGT+TGG | + | chr2_4:38903931-38903950 | Msa0327230:intron | 30.0% | |
| CAGATTCATCTACGTTAATA+GGG | - | chr2_4:38904042-38904061 | None:intergenic | 30.0% | |
| TCAGATTCATCTACGTTAAT+AGG | - | chr2_4:38904043-38904062 | None:intergenic | 30.0% | |
| TAATTAGAGACAAGCCTAAA+AGG | + | chr2_4:38904101-38904120 | Msa0327230:intron | 30.0% | |
| ! | CTTTTTCCCTCAAGATTTTA+TGG | + | chr2_4:38904434-38904453 | Msa0327230:intron | 30.0% |
| CTTTGTCCATAAAATCTTGA+GGG | - | chr2_4:38904443-38904462 | None:intergenic | 30.0% | |
| ! | ATAGGACAAATATTAGCTTC+AGG | - | chr2_4:38904873-38904892 | None:intergenic | 30.0% |
| ! | GAATTCTTTTACATCCACAA+TGG | - | chr2_4:38904916-38904935 | None:intergenic | 30.0% |
| !! | AACTCTAAAACCTTCTTTCT+TGG | - | chr2_4:38904952-38904971 | None:intergenic | 30.0% |
| ! | TGAAGGTACACATATAGTAA+AGG | + | chr2_4:38905019-38905038 | Msa0327230:CDS | 30.0% |
| ! | GAAGGTACACATATAGTAAA+GGG | + | chr2_4:38905020-38905039 | Msa0327230:CDS | 30.0% |
| TAAAGGGTGAAAATGAAGAA+GGG | + | chr2_4:38905036-38905055 | Msa0327230:CDS | 30.0% | |
| CTAATTATGAGAAAGCAGAT+TGG | - | chr2_4:38905198-38905217 | None:intergenic | 30.0% | |
| AAGCATAAGCATCTGATAAC+GGG | + | chr2_4:38902172-38902191 | Msa0327230:intron | 35.0% | |
| ATACTTCCATGACATTGCTT+GGG | - | chr2_4:38902335-38902354 | None:intergenic | 35.0% | |
| AATACTTCCATGACATTGCT+TGG | - | chr2_4:38902336-38902355 | None:intergenic | 35.0% | |
| GAGATTCTGATGTTATCAGA+GGG | - | chr2_4:38902360-38902379 | None:intergenic | 35.0% | |
| AGAGATTCTGATGTTATCAG+AGG | - | chr2_4:38902361-38902380 | None:intergenic | 35.0% | |
| !! | AATCTCTGAAACCTCAAACT+CGG | + | chr2_4:38902374-38902393 | Msa0327230:intron | 35.0% |
| CTTATATGACACGCTAGATT+TGG | - | chr2_4:38902407-38902426 | None:intergenic | 35.0% | |
| AATCTAGCGTGTCATATAAG+TGG | + | chr2_4:38902407-38902426 | Msa0327230:intron | 35.0% | |
| CTGTCTAATTGTCAACTTAG+TGG | - | chr2_4:38902466-38902485 | None:intergenic | 35.0% | |
| GTGTGTGAATGATTGTGTAA+CGG | - | chr2_4:38902640-38902659 | None:intergenic | 35.0% | |
| !! | TGAAAAAAGGTTGTTTTCGG+AGG | - | chr2_4:38902701-38902720 | None:intergenic | 35.0% |
| TCACTGTTAACTTCTCTTCT+AGG | - | chr2_4:38902842-38902861 | None:intergenic | 35.0% | |
| TAGAAGAGAAGTTAACAGTG+AGG | + | chr2_4:38902841-38902860 | Msa0327230:CDS | 35.0% | |
| AATCGATTATGTTTAGCAGG+TGG | - | chr2_4:38902911-38902930 | None:intergenic | 35.0% | |
| GAGAATCGATTATGTTTAGC+AGG | - | chr2_4:38902914-38902933 | None:intergenic | 35.0% | |
| TTTACAAGTTCCGAGTAGTT+TGG | - | chr2_4:38902972-38902991 | None:intergenic | 35.0% | |
| ATGAAGAACTCATAAGAGCA+AGG | + | chr2_4:38903036-38903055 | Msa0327230:CDS | 35.0% | |
| CTTGACTTATTTGCATTCCT+GGG | - | chr2_4:38903071-38903090 | None:intergenic | 35.0% | |
| TCTTGACTTATTTGCATTCC+TGG | - | chr2_4:38903072-38903091 | None:intergenic | 35.0% | |
| ! | GTCTCGAACTATTTTCGAAT+TGG | - | chr2_4:38903221-38903240 | None:intergenic | 35.0% |
| AAATAGTTCGAGACTCGATT+CGG | + | chr2_4:38903227-38903246 | Msa0327230:intron | 35.0% | |
| !!! | TGCTGTCAACATTTTCAAGT+GGG | - | chr2_4:38903563-38903582 | None:intergenic | 35.0% |
| !! | TTGCTGTCAACATTTTCAAG+TGG | - | chr2_4:38903564-38903583 | None:intergenic | 35.0% |
| TTCAGGAACTAGCTACTATT+AGG | + | chr2_4:38903594-38903613 | Msa0327230:intron | 35.0% | |
| CCCGTATTAAAGAAGGAAAT+AGG | - | chr2_4:38903693-38903712 | None:intergenic | 35.0% | |
| TTAATACGGGAATCCGTTTA+TGG | + | chr2_4:38903703-38903722 | Msa0327230:intron | 35.0% | |
| GAAAAAAGAAGGAGAAACTG+TGG | - | chr2_4:38903809-38903828 | None:intergenic | 35.0% | |
| CACACACACATATATGAGAT+AGG | + | chr2_4:38904160-38904179 | Msa0327230:intron | 35.0% | |
| ATTAATAGATCTGGACGGTT+GGG | - | chr2_4:38904228-38904247 | None:intergenic | 35.0% | |
| GCTTTGTCCATAAAATCTTG+AGG | - | chr2_4:38904444-38904463 | None:intergenic | 35.0% | |
| GTGTACTCAATTGATCTTAG+GGG | - | chr2_4:38904474-38904493 | None:intergenic | 35.0% | |
| GGTGTACTCAATTGATCTTA+GGG | - | chr2_4:38904475-38904494 | None:intergenic | 35.0% | |
| ACACGTGAAAGACAATCATA+TGG | - | chr2_4:38904518-38904537 | None:intergenic | 35.0% | |
| ATTGTCTTTCACGTGTCAAT+AGG | + | chr2_4:38904522-38904541 | Msa0327230:intron | 35.0% | |
| TTTCACGTGTCAATAGGAAT+TGG | + | chr2_4:38904528-38904547 | Msa0327230:intron | 35.0% | |
| CTCATTATCCATGTACCTAT+AGG | - | chr2_4:38904754-38904773 | None:intergenic | 35.0% | |
| GTACATGGATAATGAGTATG+TGG | + | chr2_4:38904758-38904777 | Msa0327230:CDS | 35.0% | |
| ACACATCATCAACTATCTCA+TGG | - | chr2_4:38904812-38904831 | None:intergenic | 35.0% | |
| ! | AATATTAGCTTCAGGTGACT+TGG | - | chr2_4:38904865-38904884 | None:intergenic | 35.0% |
| TATGGAATTTGACTCCATTG+TGG | + | chr2_4:38904899-38904918 | Msa0327230:CDS | 35.0% | |
| !!! | AAGGTTTTAGAGTTCGTGTT+CGG | + | chr2_4:38904958-38904977 | Msa0327230:CDS | 35.0% |
| GTAAAGGGTGAAAATGAAGA+AGG | + | chr2_4:38905035-38905054 | Msa0327230:CDS | 35.0% | |
| TGCTTTACAATCAGTTCTTG+AGG | - | chr2_4:38905078-38905097 | None:intergenic | 35.0% | |
| TCACTTACTGTTTCAAAAGC+AGG | + | chr2_4:38905098-38905117 | Msa0327230:CDS | 35.0% | |
| CACTTACTGTTTCAAAAGCA+GGG | + | chr2_4:38905099-38905118 | Msa0327230:CDS | 35.0% | |
| CAATGTTCACAATCATGGAA+TGG | + | chr2_4:38905154-38905173 | Msa0327230:CDS | 35.0% | |
| ! | TGATGTGTGTTGATGGATGT+GGG | - | chr2_4:38902279-38902298 | None:intergenic | 40.0% |
| ! | TTGATGTGTGTTGATGGATG+TGG | - | chr2_4:38902280-38902299 | None:intergenic | 40.0% |
| CATCCATCAACACACATCAA+CGG | + | chr2_4:38902280-38902299 | Msa0327230:intron | 40.0% | |
| ! | TTGGTTCTTATCCGAGTTTG+AGG | - | chr2_4:38902388-38902407 | None:intergenic | 40.0% |
| AGCGTGTCATATAAGTGGAA+AGG | + | chr2_4:38902412-38902431 | Msa0327230:intron | 40.0% | |
| TCAACTACTTTGTTGACACC+TGG | + | chr2_4:38902439-38902458 | Msa0327230:intron | 40.0% | |
| TGACGTGTATCTCAACTGTT+GGG | + | chr2_4:38902498-38902517 | Msa0327230:intron | 40.0% | |
| !! | AAAAAGGTTGTTTTCGGAGG+AGG | - | chr2_4:38902698-38902717 | None:intergenic | 40.0% |
| !!! | CTGAAGGCTTTTGGTTTCTA+GGG | - | chr2_4:38902731-38902750 | None:intergenic | 40.0% |
| !!! | TCTGAAGGCTTTTGGTTTCT+AGG | - | chr2_4:38902732-38902751 | None:intergenic | 40.0% |
| !! | TTGAGACTTCTGAAGGCTTT+TGG | - | chr2_4:38902740-38902759 | None:intergenic | 40.0% |
| GATGTCATTGAGACTTCTGA+AGG | - | chr2_4:38902747-38902766 | None:intergenic | 40.0% | |
| ! | ACATAATCGATTCTCACCAG+TGG | + | chr2_4:38902919-38902938 | Msa0327230:CDS | 40.0% |
| GATTGATATAGTGATGCCAC+TGG | - | chr2_4:38902938-38902957 | None:intergenic | 40.0% | |
| AACTCATAAGAGCAAGGACA+AGG | + | chr2_4:38903042-38903061 | Msa0327230:CDS | 40.0% | |
| ACTCATAAGAGCAAGGACAA+GGG | + | chr2_4:38903043-38903062 | Msa0327230:CDS | 40.0% | |
| !! | AAGAAAGGAACTTGGGTTGA+AGG | + | chr2_4:38903088-38903107 | Msa0327230:CDS | 40.0% |
| ACAGCAAACTAAGGTCATTC+AGG | + | chr2_4:38903577-38903596 | Msa0327230:intron | 40.0% | |
| CCGATGTAAACTTCCAATGT+GGG | - | chr2_4:38903636-38903655 | None:intergenic | 40.0% | |
| CCCACATTGGAAGTTTACAT+CGG | + | chr2_4:38903633-38903652 | Msa0327230:intron | 40.0% | |
| CCACATTGGAAGTTTACATC+GGG | + | chr2_4:38903634-38903653 | Msa0327230:intron | 40.0% | |
| CACATTGGAAGTTTACATCG+GGG | + | chr2_4:38903635-38903654 | Msa0327230:intron | 40.0% | |
| ACGGATTCCCGTATTAAAGA+AGG | - | chr2_4:38903700-38903719 | None:intergenic | 40.0% | |
| TTCATCTACGTTAATAGGGC+TGG | - | chr2_4:38904038-38904057 | None:intergenic | 40.0% | |
| GATTAATAGATCTGGACGGT+TGG | - | chr2_4:38904229-38904248 | None:intergenic | 40.0% | |
| ATCAAAACCTCAAGACAACG+CGG | - | chr2_4:38904333-38904352 | None:intergenic | 40.0% | |
| CTCAATTGATCTTAGGGGAA+AGG | - | chr2_4:38904469-38904488 | None:intergenic | 40.0% | |
| CGGTGTACTCAATTGATCTT+AGG | - | chr2_4:38904476-38904495 | None:intergenic | 40.0% | |
| AGTACACCGTCAAAAACAAG+TGG | + | chr2_4:38904487-38904506 | Msa0327230:intron | 40.0% | |
| CGTGAAAGACAATCATATGG+CGG | - | chr2_4:38904515-38904534 | None:intergenic | 40.0% | |
| ACATCGTTTGCCAAGAAAGA+AGG | + | chr2_4:38904939-38904958 | Msa0327230:CDS | 40.0% | |
| ATGCTTGTATGCGCTAATGA+AGG | + | chr2_4:38905002-38905021 | Msa0327230:CDS | 40.0% | |
| AAGCAGGGAAGAGAAGTAAA+TGG | + | chr2_4:38905114-38905133 | Msa0327230:CDS | 40.0% | |
| AGCAGGGAAGAGAAGTAAAT+GGG | + | chr2_4:38905115-38905134 | Msa0327230:CDS | 40.0% | |
| ! | AATGGTTAGTCCTAAGAGTG+TGG | + | chr2_4:38905172-38905191 | Msa0327230:CDS | 40.0% |
| !! | TCTGATAACGGGTTCCACTT+TGG | + | chr2_4:38902183-38902202 | Msa0327230:intron | 45.0% |
| ACACAACTATGGCACCAAAG+TGG | - | chr2_4:38902200-38902219 | None:intergenic | 45.0% | |
| ! | GATGTGTGTTGATGGATGTG+GGG | - | chr2_4:38902278-38902297 | None:intergenic | 45.0% |
| GATTGCATCAATGGCACCAA+TGG | + | chr2_4:38902307-38902326 | Msa0327230:intron | 45.0% | |
| ! | AATTGTCAACTTAGTGGGCC+AGG | - | chr2_4:38902460-38902479 | None:intergenic | 45.0% |
| GTGACGTGTATCTCAACTGT+TGG | + | chr2_4:38902497-38902516 | Msa0327230:intron | 45.0% | |
| GAAATAAGGTCATCTGTCCC+AGG | + | chr2_4:38903125-38903144 | Msa0327230:intron | 45.0% | |
| GTGGCCATCTCTTTCTCTAT+TGG | - | chr2_4:38903498-38903517 | None:intergenic | 45.0% | |
| CCCGATGTAAACTTCCAATG+TGG | - | chr2_4:38903637-38903656 | None:intergenic | 45.0% | |
| AGTCAAGCTCGCAAACAACT+TGG | - | chr2_4:38903870-38903889 | None:intergenic | 45.0% | |
| AGAGACAAGCCTAAAAGGCT+TGG | + | chr2_4:38904106-38904125 | Msa0327230:intron | 45.0% | |
| AGATAGGATCCGTTGACACT+AGG | + | chr2_4:38904176-38904195 | Msa0327230:intron | 45.0% | |
| !! | AATTGGTGTCGACGAATTCG+TGG | - | chr2_4:38904205-38904224 | None:intergenic | 45.0% |
| GTGCCATAGTTGTGTGCCAT+TGG | + | chr2_4:38902205-38902224 | Msa0327230:intron | 50.0% | |
| GCACCAATGGCACACAACTA+TGG | - | chr2_4:38902211-38902230 | None:intergenic | 50.0% | |
| !! | TTGTGTGCCATTGGTGCCAT+TGG | + | chr2_4:38902214-38902233 | Msa0327230:intron | 50.0% |
| TGTGATGTGTGTGTGTGTGG+TGG | - | chr2_4:38902248-38902267 | None:intergenic | 50.0% | |
| GTGTGTGATGTGTGTGTGTG+TGG | - | chr2_4:38902251-38902270 | None:intergenic | 50.0% | |
| TGGCCGTTGATGTGTGTTGA+TGG | - | chr2_4:38902286-38902305 | None:intergenic | 50.0% | |
| ATCAACACACATCAACGGCC+AGG | + | chr2_4:38902285-38902304 | Msa0327230:intron | 50.0% | |
| AACGGCCAGGATTGCATCAA+TGG | + | chr2_4:38902298-38902317 | Msa0327230:intron | 50.0% | |
| !! | TGGTGCCATTGATGCAATCC+TGG | - | chr2_4:38902306-38902325 | None:intergenic | 50.0% |
| ! | TGACATTGCTTGGGTGCCAT+TGG | - | chr2_4:38902326-38902345 | None:intergenic | 50.0% |
| ATGGCACCCAAGCAATGTCA+TGG | + | chr2_4:38902326-38902345 | Msa0327230:intron | 50.0% | |
| ! | AGGCCTTTTGTGATGACCAG+CGG | - | chr2_4:38903155-38903174 | None:intergenic | 50.0% |
| GCAGTTCACTAGTCCCACAT+TGG | + | chr2_4:38903620-38903639 | Msa0327230:intron | 50.0% | |
| TCGTGGACACCTAGTGTCAA+CGG | - | chr2_4:38904188-38904207 | None:intergenic | 50.0% | |
| AGATCTGGACGGTTGGGAAT+TGG | - | chr2_4:38904222-38904241 | None:intergenic | 50.0% | |
| ! | CTTTTCTCCGCGTTGTCTTG+AGG | + | chr2_4:38904323-38904342 | Msa0327230:intron | 50.0% |
| AAGGTGCAGAACCTTCTCCT+CGG | - | chr2_4:38904383-38904402 | None:intergenic | 50.0% | |
| GAAAACTCACGCGATGACGA+AGG | - | chr2_4:38904402-38904421 | None:intergenic | 50.0% | |
| !!! | GCGGTGCCACTTGTTTTTGA+CGG | - | chr2_4:38904496-38904515 | None:intergenic | 50.0% |
| ! | AGCAGATTGGCCACACTCTT+AGG | - | chr2_4:38905185-38905204 | None:intergenic | 50.0% |
| GATGGCACCAATGGCACCAA+TGG | - | chr2_4:38902224-38902243 | None:intergenic | 55.0% | |
| ! | TGTGGTGGAGATGGCACCAA+TGG | - | chr2_4:38902233-38902252 | None:intergenic | 55.0% |
| ! | GTGTGTGTGTGTGGTGGAGA+TGG | - | chr2_4:38902242-38902261 | None:intergenic | 55.0% |
| GCTCCGCTGGTCATCACAAA+AGG | + | chr2_4:38903149-38903168 | Msa0327230:intron | 55.0% | |
| GAGCAAGGACAAGGGATCCC+AGG | + | chr2_4:38903051-38903070 | Msa0327230:CDS | 60.0% | |
| TGATGACCAGCGGAGCTCCT+GGG | - | chr2_4:38903145-38903164 | None:intergenic | 60.0% | |
| AACCTTCTCCTCGGCGGCAA+TGG | - | chr2_4:38904374-38904393 | None:intergenic | 60.0% | |
| GTGCAGAACCTTCTCCTCGG+CGG | - | chr2_4:38904380-38904399 | None:intergenic | 60.0% | |
| GCTGTGTCTCGCGCTCCCTT+TGG | + | chr2_4:38902557-38902576 | Msa0327230:intron | 65.0% | |
| ATCTGTCCCAGGAGCTCCGC+TGG | + | chr2_4:38903136-38903155 | Msa0327230:intron | 65.0% | |
| GTGATGACCAGCGGAGCTCC+TGG | - | chr2_4:38903146-38903165 | None:intergenic | 65.0% | |
| GCAAGTCACCATTGCCGCCG+AGG | + | chr2_4:38904363-38904382 | Msa0327230:intron | 65.0% | |
| CACCATTGCCGCCGAGGAGA+AGG | + | chr2_4:38904369-38904388 | Msa0327230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38902150 | 38905217 | 38902150 | ID=Msa0327230;Name=Msa0327230 |
| chr2_4 | mRNA | 38902150 | 38905217 | 38902150 | ID=Msa0327230-mRNA-1;Parent=Msa0327230;Name=Msa0327230-mRNA-1;_AED=0.14;_eAED=0.34;_QI=0|0|0|0.75|1|1|4|0|252 |
| chr2_4 | exon | 38902150 | 38902153 | 38902150 | ID=Msa0327230-mRNA-1:exon:11641;Parent=Msa0327230-mRNA-1 |
| chr2_4 | exon | 38902828 | 38902991 | 38902828 | ID=Msa0327230-mRNA-1:exon:11642;Parent=Msa0327230-mRNA-1 |
| chr2_4 | exon | 38903002 | 38903132 | 38903002 | ID=Msa0327230-mRNA-1:exon:11643;Parent=Msa0327230-mRNA-1 |
| chr2_4 | exon | 38904758 | 38905217 | 38904758 | ID=Msa0327230-mRNA-1:exon:11644;Parent=Msa0327230-mRNA-1 |
| chr2_4 | CDS | 38902150 | 38902153 | 38902150 | ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1 |
| chr2_4 | CDS | 38902828 | 38902991 | 38902828 | ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1 |
| chr2_4 | CDS | 38903002 | 38903132 | 38903002 | ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1 |
| chr2_4 | CDS | 38904758 | 38905217 | 38904758 | ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
