AlfalfaGEDB | Msa0327230

M. sativa cultivar zhongmu-4 / Msa0327230

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327230	XP_039682845.1	92.000	150	12	0	102	251	1	150	5.57e-92	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0327230	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327230	MtrunA17_Chr2g0289081	73.451	113	27	2	91	200	8	120	4.87e-49	158
Msa0327230	MtrunA17_Chr1g0198761	35.256	156	79	8	116	251	17	170	9.89e-11	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCATAAGAGCAAGGACA+AGG	0.546788	2_4:+38903042	Msa0327230:CDS
AACTCTAAAACCTTCTTTCT+TGG	0.184975	2_4:-38904949	None:intergenic
AAGAAAGGAACTTGGGTTGA+AGG	0.471139	2_4:+38903088	Msa0327230:CDS
AAGCAGGGAAGAGAAGTAAA+TGG	0.304863	2_4:+38905114	Msa0327230:CDS
AATAAGTCAAGAAAGGAACT+TGG	0.534929	2_4:+38903080	Msa0327230:CDS
AATATTAGCTTCAGGTGACT+TGG	0.474696	2_4:-38904862	None:intergenic
AATCGATTATGTTTAGCAGG+TGG	0.579440	2_4:-38902908	None:intergenic
AATGGTTAGTCCTAAGAGTG+TGG	0.676645	2_4:+38905172	Msa0327230:CDS
ACACATCATCAACTATCTCA+TGG	0.582009	2_4:-38904809	None:intergenic
ACATAATCGATTCTCACCAG+TGG	0.684055	2_4:+38902919	Msa0327230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGCATAAGCATCTGATAA+CGG	+	chr2_4:38902171-38902190	Msa0327230:intron	30.0%
TGTCTAATTGTCAACTTAGT+GGG	-	chr2_4:38902465-38902484	None:intergenic	30.0%
TAATAACCGTAAGACAATGA+TGG	+	chr2_4:38902521-38902540	Msa0327230:intron	30.0%
GAAAAACCATCATTGTCTTA+CGG	-	chr2_4:38902530-38902549	None:intergenic	30.0%
TTCAAAATTGGGCATACAAA+AGG	+	chr2_4:38902598-38902617	Msa0327230:intron	30.0%
TTGTGAAAGAAATCAACACT+TGG	-	chr2_4:38902801-38902820	None:intergenic	30.0%
GTTAAACAATCCAAACTACT+CGG	+	chr2_4:38902959-38902978	Msa0327230:CDS	30.0%
GAATGCAAATAAGTCAAGAA+AGG	+	chr2_4:38903073-38903092	Msa0327230:CDS	30.0%
AATAAGTCAAGAAAGGAACT+TGG	+	chr2_4:38903080-38903099	Msa0327230:CDS	30.0%
ATAAGTCAAGAAAGGAACTT+GGG	+	chr2_4:38903081-38903100	Msa0327230:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	38902150	38905217	38902150	ID=Msa0327230;Name=Msa0327230
chr2_4	mRNA	38902150	38905217	38902150	ID=Msa0327230-mRNA-1;Parent=Msa0327230;Name=Msa0327230-mRNA-1;_AED=0.14;_eAED=0.34;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|252
chr2_4	exon	38902150	38902153	38902150	ID=Msa0327230-mRNA-1:exon:11641;Parent=Msa0327230-mRNA-1
chr2_4	exon	38902828	38902991	38902828	ID=Msa0327230-mRNA-1:exon:11642;Parent=Msa0327230-mRNA-1
chr2_4	exon	38903002	38903132	38903002	ID=Msa0327230-mRNA-1:exon:11643;Parent=Msa0327230-mRNA-1
chr2_4	exon	38904758	38905217	38904758	ID=Msa0327230-mRNA-1:exon:11644;Parent=Msa0327230-mRNA-1
chr2_4	CDS	38902150	38902153	38902150	ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1
chr2_4	CDS	38902828	38902991	38902828	ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1
chr2_4	CDS	38903002	38903132	38903002	ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1
chr2_4	CDS	38904758	38905217	38904758	ID=Msa0327230-mRNA-1:cds;Parent=Msa0327230-mRNA-1

Gene Sequence

>Msa0327230

ATGGACGATGAGTATCCTAGAAGAGAAGTTAACAGTGAGGCCAAAAGATATTTTTTACTTATTCGGGTTAAAAGAGAATGGAATCCACCTGCTAAACATAATCGATTCTCACCAGTGGCATCACTATATCAATCTGTTAAACAATCCAAACTACTCGGAACTTGTAAAGTTAGAGAAGAAGTGTTTGATAAAAGAGCAACATATGAAGAACTCATAAGAGCAAGGACAAGGGATCCCAGGAATGCAAATAAGTCAAGAAAGGAACTTGGGTTGAAGGAGTTTTTTGAGACAGAAATAAGGTACATGGATAATGAGTATGTGGAAAATTCTACTGTTGAGTGTTTAGAAGACCATGAGATAGTTGATGATGTGTCTAATGATTTAGAACCAAATTTAGAAAATTCCAAGTCACCTGAAGCTAATATTTGTCCTATTGTTGATATGGAATTTGACTCCATTGTGGATGTAAAAGAATTCTACACATCGTTTGCCAAGAAAGAAGGTTTTAGAGTTCGTGTTCGGTCTACTAAGCAAATTTTTTGCATGCTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGAGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCACAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCAATCTGCTTTCTCATAATTAG

Protein sequence

>Msa0327230

MDDEYPRREVNSEAKRYFLLIRVKREWNPPAKHNRFSPVASLYQSVKQSKLLGTCKVREEVFDKRATYEELIRARTRDPRNANKSRKELGLKEFFETEIRYMDNEYVENSTVECLEDHEIVDDVSNDLEPNLENSKSPEANICPIVDMEFDSIVDVKEFYTSFAKKEGFRVRVRSTKQIFCMLVCANEGTHIVKGENEEGKRKSSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMVSPKSVANLLSHN*