Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327270 | XP_003610737.1 | 91.447 | 152 | 13 | 0 | 3 | 154 | 39 | 190 | 3.99e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327270 | sp|P05332|YP20_BACLI | 32.450 | 151 | 91 | 3 | 4 | 148 | 27 | 172 | 1.36e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0327270 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327270 | MtrunA17_Chr5g0394621 | 91.447 | 152 | 13 | 0 | 3 | 154 | 39 | 190 | 3.67e-100 | 285 |
| Msa0327270 | MtrunA17_Chr5g0394631 | 78.014 | 141 | 31 | 0 | 4 | 144 | 40 | 180 | 4.37e-74 | 226 |
| Msa0327270 | MtrunA17_Chr5g0394631 | 74.194 | 155 | 34 | 4 | 4 | 154 | 249 | 401 | 5.96e-71 | 218 |
| Msa0327270 | MtrunA17_Chr1g0204951 | 65.132 | 152 | 51 | 1 | 3 | 154 | 41 | 190 | 3.03e-68 | 204 |
| Msa0327270 | MtrunA17_Chr1g0204971 | 61.842 | 152 | 56 | 1 | 3 | 154 | 41 | 190 | 1.64e-64 | 195 |
| Msa0327270 | MtrunA17_Chr7g0273661 | 39.394 | 132 | 77 | 1 | 5 | 136 | 28 | 156 | 1.79e-29 | 105 |
| Msa0327270 | MtrunA17_Chr7g0223361 | 38.776 | 147 | 86 | 2 | 5 | 151 | 28 | 170 | 1.22e-28 | 103 |
| Msa0327270 | MtrunA17_Chr7g0223351 | 37.584 | 149 | 88 | 2 | 3 | 151 | 26 | 169 | 3.13e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327270 | AT2G32030.1 | 51.007 | 149 | 66 | 3 | 4 | 151 | 43 | 185 | 1.72e-48 | 155 |
| Msa0327270 | AT2G32020.1 | 51.007 | 149 | 66 | 2 | 4 | 151 | 38 | 180 | 5.86e-45 | 145 |
| Msa0327270 | AT3G22560.1 | 36.242 | 149 | 90 | 2 | 5 | 151 | 27 | 172 | 6.91e-27 | 99.8 |
Find 29 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCTAGGCTCTAAATTT+TGG | 0.141937 | 2_4:+38978837 | Msa0327270:CDS |
| TGTTGGGTCTCAAAGAGTTT+TGG | 0.282550 | 2_4:+38978961 | Msa0327270:CDS |
| ATATATCTTCAAAGTTTCTA+TGG | 0.289200 | 2_4:+38978714 | Msa0327270:CDS |
| GCAGAACTTGGCTATGTTCT+AGG | 0.302641 | 2_4:+38978824 | Msa0327270:CDS |
| ATTCTGTGAGTTGTCTTACT+TGG | 0.388223 | 2_4:+38978907 | Msa0327270:CDS |
| CCAAACAATTGAATTATAGT+TGG | 0.393357 | 2_4:-38979084 | Msa0327260:intron |
| TGCATCAATGATCGTGCAAT+TGG | 0.403589 | 2_4:+38978749 | Msa0327270:CDS |
| AGTTGCCAAGTTCTGCTCTT+GGG | 0.428431 | 2_4:+38978649 | Msa0327270:CDS |
| GTTGATGCCATCATCCTTGC+TGG | 0.429573 | 2_4:-38978681 | Msa0327260:intron |
| AAGTTGCCAAGTTCTGCTCT+TGG | 0.477212 | 2_4:+38978648 | Msa0327270:CDS |
| AGGAAATATTTGTTCATGAA+AGG | 0.480337 | 2_4:+38979016 | Msa0327270:CDS |
| GTGAGTTGTCTTACTTGGAA+AGG | 0.487957 | 2_4:+38978912 | Msa0327270:CDS |
| GCTTGAAGCTTTAGTTGATG+TGG | 0.488968 | 2_4:+38978934 | Msa0327270:CDS |
| TAGTTGATGTGGAAAATGTT+GGG | 0.494202 | 2_4:+38978945 | Msa0327270:CDS |
| TCGTTCCTTGATTTATCACC+AGG | 0.504570 | 2_4:-38978797 | Msa0327260:intron |
| GTTCACCTGGTGATAAATCA+AGG | 0.507986 | 2_4:+38978792 | Msa0327270:CDS |
| TTAGTTGATGTGGAAAATGT+TGG | 0.523001 | 2_4:+38978944 | Msa0327270:CDS |
| AGGAACGAATGTGCAGAACT+TGG | 0.523520 | 2_4:+38978812 | Msa0327270:CDS |
| AAGTAAGACAACTCACAGAA+TGG | 0.538254 | 2_4:-38978905 | Msa0327260:intron |
| TCTCTATCCTCAAGTTCACC+TGG | 0.545696 | 2_4:+38978779 | Msa0327270:CDS |
| TGTTGTGAAACAAGTGGTTA+AGG | 0.553508 | 2_4:+38978880 | Msa0327270:CDS |
| CTCTACACCAGCAAGGATGA+TGG | 0.559987 | 2_4:+38978674 | Msa0327270:CDS |
| GCATCAATGATCGTGCAATT+GGG | 0.567462 | 2_4:+38978750 | Msa0327270:CDS |
| GAGTTCCCAAGAGCAGAACT+TGG | 0.571214 | 2_4:-38978654 | Msa0327260:intron |
| TTTATCACCAGGTGAACTTG+AGG | 0.579933 | 2_4:-38978786 | Msa0327260:intron |
| CACTTGTTTCACAACACACG+TGG | 0.596860 | 2_4:-38978873 | Msa0327260:intron |
| GAGATCAGTAGAAAGAACAC+TGG | 0.658551 | 2_4:-38979062 | Msa0327260:intron |
| TTGGGAACTCTACACCAGCA+AGG | 0.679749 | 2_4:+38978667 | Msa0327270:CDS |
| CACGTGTGTTGTGAAACAAG+TGG | 0.736637 | 2_4:+38978874 | Msa0327270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTAAATGTATATTTTTA+AGG | + | chr2_4:38977806-38977825 | Msa0327270:intron | 10.0% |
| !!! | TATGTAAATGTATATTTTTA+AGG | + | chr2_4:38977806-38977825 | Msa0327270:intron | 10.0% |
| !! | TATGTAAAAAATTAATAGTC+AGG | - | chr2_4:38977788-38977807 | Msa0327260:intron | 15.0% |
| !! | ATATATCATATATCATCATT+TGG | + | chr2_4:38978398-38978417 | Msa0327270:intron | 15.0% |
| !! | TATGTAAAAAATTAATAGTC+AGG | - | chr2_4:38977788-38977807 | Msa0327260:intron | 15.0% |
| !! | ATATATCATATATCATCATT+TGG | + | chr2_4:38978398-38978417 | Msa0327270:intron | 15.0% |
| !! | CTTCTATTCTTATATTAAGA+AGG | + | chr2_4:38977911-38977930 | Msa0327270:intron | 20.0% |
| !! | TGTTGAAACATATTATACAT+AGG | + | chr2_4:38978326-38978345 | Msa0327270:intron | 20.0% |
| !! | GTTGAAACATATTATACATA+GGG | + | chr2_4:38978327-38978346 | Msa0327270:intron | 20.0% |
| !! | TATATGATATATCACACTTA+GGG | - | chr2_4:38978390-38978409 | Msa0327260:intron | 20.0% |
| !! | ATATATGATATATCACACTT+AGG | - | chr2_4:38978391-38978410 | Msa0327260:intron | 20.0% |
| !!! | ATCATTTGGTCTTATTATTA+AGG | + | chr2_4:38978412-38978431 | Msa0327270:intron | 20.0% |
| !! | ATATATCTTCAAAGTTTCTA+TGG | + | chr2_4:38978714-38978733 | Msa0327270:CDS | 20.0% |
| !! | CTTCTATTCTTATATTAAGA+AGG | + | chr2_4:38977911-38977930 | Msa0327270:intron | 20.0% |
| !! | TGTTGAAACATATTATACAT+AGG | + | chr2_4:38978326-38978345 | Msa0327270:intron | 20.0% |
| !! | GTTGAAACATATTATACATA+GGG | + | chr2_4:38978327-38978346 | Msa0327270:intron | 20.0% |
| !! | TATATGATATATCACACTTA+GGG | - | chr2_4:38978390-38978409 | Msa0327260:intron | 20.0% |
| !! | ATATATGATATATCACACTT+AGG | - | chr2_4:38978391-38978410 | Msa0327260:intron | 20.0% |
| !!! | ATCATTTGGTCTTATTATTA+AGG | + | chr2_4:38978412-38978431 | Msa0327270:intron | 20.0% |
| !! | ATATATCTTCAAAGTTTCTA+TGG | + | chr2_4:38978714-38978733 | Msa0327270:CDS | 20.0% |
| ! | TGAATCTGTGTTATATATTC+AGG | + | chr2_4:38977602-38977621 | Msa0327270:intron | 25.0% |
| !!! | TATATTCAGGTTAAACCTTT+TGG | + | chr2_4:38977615-38977634 | Msa0327270:intron | 25.0% |
| !!! | ATATTCAGGTTAAACCTTTT+GGG | + | chr2_4:38977616-38977635 | Msa0327270:intron | 25.0% |
| !! | TAAAACCTAAATTACCCTTT+TGG | - | chr2_4:38977882-38977901 | Msa0327260:intron | 25.0% |
| ! | TATAAGAATAGAAGATGTTG+TGG | - | chr2_4:38977905-38977924 | Msa0327260:intron | 25.0% |
| !!! | AACTTTAGAGTAAGTTTTAC+TGG | + | chr2_4:38978464-38978483 | Msa0327270:intron | 25.0% |
| !!! | ACTTTAGAGTAAGTTTTACT+GGG | + | chr2_4:38978465-38978484 | Msa0327270:intron | 25.0% |
| ! | TTGTTCATAAAATTGCAAAG+CGG | + | chr2_4:38978504-38978523 | Msa0327270:intron | 25.0% |
| ! | AGGAAATATTTGTTCATGAA+AGG | + | chr2_4:38979016-38979035 | Msa0327270:CDS | 25.0% |
| ! | TGAATCTGTGTTATATATTC+AGG | + | chr2_4:38977602-38977621 | Msa0327270:intron | 25.0% |
| !!! | TATATTCAGGTTAAACCTTT+TGG | + | chr2_4:38977615-38977634 | Msa0327270:intron | 25.0% |
| !!! | ATATTCAGGTTAAACCTTTT+GGG | + | chr2_4:38977616-38977635 | Msa0327270:intron | 25.0% |
| !! | TAAAACCTAAATTACCCTTT+TGG | - | chr2_4:38977882-38977901 | Msa0327260:intron | 25.0% |
| ! | TATAAGAATAGAAGATGTTG+TGG | - | chr2_4:38977905-38977924 | Msa0327260:intron | 25.0% |
| !!! | AACTTTAGAGTAAGTTTTAC+TGG | + | chr2_4:38978464-38978483 | Msa0327270:intron | 25.0% |
| !!! | ACTTTAGAGTAAGTTTTACT+GGG | + | chr2_4:38978465-38978484 | Msa0327270:intron | 25.0% |
| ! | TTGTTCATAAAATTGCAAAG+CGG | + | chr2_4:38978504-38978523 | Msa0327270:intron | 25.0% |
| ! | AGGAAATATTTGTTCATGAA+AGG | + | chr2_4:38979016-38979035 | Msa0327270:CDS | 25.0% |
| AGAATCTCAAAAGGAAAGAA+GGG | - | chr2_4:38977484-38977503 | Msa0327260:CDS | 30.0% | |
| AAGAACAAGAGAATCTCAAA+AGG | - | chr2_4:38977493-38977512 | Msa0327260:CDS | 30.0% | |
| CATCTTTCATTCTAACATCA+GGG | - | chr2_4:38977584-38977603 | Msa0327260:intron | 30.0% | |
| TCATCTTTCATTCTAACATC+AGG | - | chr2_4:38977585-38977604 | Msa0327260:intron | 30.0% | |
| !! | TTAAGTTGAAGTAGCTCAAT+AGG | + | chr2_4:38977846-38977865 | Msa0327270:intron | 30.0% |
| GTCATGTATAAACTCCAAAA+GGG | - | chr2_4:38978038-38978057 | Msa0327260:intron | 30.0% | |
| TGTCATGTATAAACTCCAAA+AGG | - | chr2_4:38978039-38978058 | Msa0327260:intron | 30.0% | |
| ACACATAGTCCACATATTAA+GGG | - | chr2_4:38978187-38978206 | Msa0327260:intron | 30.0% | |
| AACACATAGTCCACATATTA+AGG | - | chr2_4:38978188-38978207 | Msa0327260:intron | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+GGG | - | chr2_4:38978600-38978619 | Msa0327260:intron | 30.0% | |
| !!! | ATGTTCTAGGCTCTAAATTT+TGG | + | chr2_4:38978837-38978856 | Msa0327270:CDS | 30.0% |
| !!! | TGTTCTAGGCTCTAAATTTT+GGG | + | chr2_4:38978838-38978857 | Msa0327270:CDS | 30.0% |
| ! | TTAGTTGATGTGGAAAATGT+TGG | + | chr2_4:38978944-38978963 | Msa0327270:CDS | 30.0% |
| ! | TAGTTGATGTGGAAAATGTT+GGG | + | chr2_4:38978945-38978964 | Msa0327270:CDS | 30.0% |
| ! | AAAGTTGGTTTCCAAAAAGA+GGG | + | chr2_4:38978986-38979005 | Msa0327270:CDS | 30.0% |
| AGAATCTCAAAAGGAAAGAA+GGG | - | chr2_4:38977484-38977503 | Msa0327260:CDS | 30.0% | |
| AAGAACAAGAGAATCTCAAA+AGG | - | chr2_4:38977493-38977512 | Msa0327260:CDS | 30.0% | |
| CATCTTTCATTCTAACATCA+GGG | - | chr2_4:38977584-38977603 | Msa0327260:intron | 30.0% | |
| TCATCTTTCATTCTAACATC+AGG | - | chr2_4:38977585-38977604 | Msa0327260:intron | 30.0% | |
| !! | TTAAGTTGAAGTAGCTCAAT+AGG | + | chr2_4:38977846-38977865 | Msa0327270:intron | 30.0% |
| GTCATGTATAAACTCCAAAA+GGG | - | chr2_4:38978038-38978057 | Msa0327260:intron | 30.0% | |
| TGTCATGTATAAACTCCAAA+AGG | - | chr2_4:38978039-38978058 | Msa0327260:intron | 30.0% | |
| ACACATAGTCCACATATTAA+GGG | - | chr2_4:38978187-38978206 | Msa0327260:intron | 30.0% | |
| AACACATAGTCCACATATTA+AGG | - | chr2_4:38978188-38978207 | Msa0327260:intron | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+GGG | - | chr2_4:38978600-38978619 | Msa0327260:intron | 30.0% | |
| !!! | ATGTTCTAGGCTCTAAATTT+TGG | + | chr2_4:38978837-38978856 | Msa0327270:CDS | 30.0% |
| !!! | TGTTCTAGGCTCTAAATTTT+GGG | + | chr2_4:38978838-38978857 | Msa0327270:CDS | 30.0% |
| ! | TTAGTTGATGTGGAAAATGT+TGG | + | chr2_4:38978944-38978963 | Msa0327270:CDS | 30.0% |
| ! | TAGTTGATGTGGAAAATGTT+GGG | + | chr2_4:38978945-38978964 | Msa0327270:CDS | 30.0% |
| ! | AAAGTTGGTTTCCAAAAAGA+GGG | + | chr2_4:38978986-38979005 | Msa0327270:CDS | 30.0% |
| GAGAATCTCAAAAGGAAAGA+AGG | - | chr2_4:38977485-38977504 | Msa0327260:CDS | 35.0% | |
| ! | GTTAAACCTTTTGGGCTTAT+GGG | + | chr2_4:38977624-38977643 | Msa0327270:intron | 35.0% |
| ! | CATTGTTTGGTAATACTCGT+GGG | + | chr2_4:38977661-38977680 | Msa0327270:intron | 35.0% |
| !! | CACATTTTGATCAAGCTTGA+GGG | - | chr2_4:38977722-38977741 | Msa0327260:intron | 35.0% |
| !! | ACACATTTTGATCAAGCTTG+AGG | - | chr2_4:38977723-38977742 | Msa0327260:intron | 35.0% |
| ATGATATATCACACTTAGGG+TGG | - | chr2_4:38978387-38978406 | Msa0327260:intron | 35.0% | |
| GAACAGATTCATATTCAAGG+AGG | + | chr2_4:38978526-38978545 | Msa0327270:intron | 35.0% | |
| TCAAGGTCAGAAAGATTAAG+GGG | - | chr2_4:38978599-38978618 | Msa0327260:intron | 35.0% | |
| CATCAAGGTCAGAAAGATTA+AGG | - | chr2_4:38978601-38978620 | Msa0327260:intron | 35.0% | |
| TCTATACCATGAGATCATCA+AGG | - | chr2_4:38978616-38978635 | Msa0327260:intron | 35.0% | |
| !!! | GTTCTAGGCTCTAAATTTTG+GGG | + | chr2_4:38978839-38978858 | Msa0327270:CDS | 35.0% |
| !!! | GCTCTAAATTTTGGGGTAAA+GGG | + | chr2_4:38978846-38978865 | Msa0327270:CDS | 35.0% |
| !!! | CTCTAAATTTTGGGGTAAAG+GGG | + | chr2_4:38978847-38978866 | Msa0327270:CDS | 35.0% |
| TGTTGTGAAACAAGTGGTTA+AGG | + | chr2_4:38978880-38978899 | Msa0327270:CDS | 35.0% | |
| AAGTAAGACAACTCACAGAA+TGG | - | chr2_4:38978908-38978927 | Msa0327260:intron | 35.0% | |
| ATTCTGTGAGTTGTCTTACT+TGG | + | chr2_4:38978907-38978926 | Msa0327270:CDS | 35.0% | |
| !!! | CAAAGAGTTTTGGAGAAAGT+TGG | + | chr2_4:38978971-38978990 | Msa0327270:CDS | 35.0% |
| ! | GAAAGTTGGTTTCCAAAAAG+AGG | + | chr2_4:38978985-38979004 | Msa0327270:CDS | 35.0% |
| GAGAATCTCAAAAGGAAAGA+AGG | - | chr2_4:38977485-38977504 | Msa0327260:CDS | 35.0% | |
| ! | GTTAAACCTTTTGGGCTTAT+GGG | + | chr2_4:38977624-38977643 | Msa0327270:intron | 35.0% |
| ! | CATTGTTTGGTAATACTCGT+GGG | + | chr2_4:38977661-38977680 | Msa0327270:intron | 35.0% |
| !! | CACATTTTGATCAAGCTTGA+GGG | - | chr2_4:38977722-38977741 | Msa0327260:intron | 35.0% |
| !! | ACACATTTTGATCAAGCTTG+AGG | - | chr2_4:38977723-38977742 | Msa0327260:intron | 35.0% |
| ATGATATATCACACTTAGGG+TGG | - | chr2_4:38978387-38978406 | Msa0327260:intron | 35.0% | |
| GAACAGATTCATATTCAAGG+AGG | + | chr2_4:38978526-38978545 | Msa0327270:intron | 35.0% | |
| TCAAGGTCAGAAAGATTAAG+GGG | - | chr2_4:38978599-38978618 | Msa0327260:intron | 35.0% | |
| CATCAAGGTCAGAAAGATTA+AGG | - | chr2_4:38978601-38978620 | Msa0327260:intron | 35.0% | |
| TCTATACCATGAGATCATCA+AGG | - | chr2_4:38978616-38978635 | Msa0327260:intron | 35.0% | |
| !!! | GTTCTAGGCTCTAAATTTTG+GGG | + | chr2_4:38978839-38978858 | Msa0327270:CDS | 35.0% |
| !!! | GCTCTAAATTTTGGGGTAAA+GGG | + | chr2_4:38978846-38978865 | Msa0327270:CDS | 35.0% |
| !!! | CTCTAAATTTTGGGGTAAAG+GGG | + | chr2_4:38978847-38978866 | Msa0327270:CDS | 35.0% |
| TGTTGTGAAACAAGTGGTTA+AGG | + | chr2_4:38978880-38978899 | Msa0327270:CDS | 35.0% | |
| AAGTAAGACAACTCACAGAA+TGG | - | chr2_4:38978908-38978927 | Msa0327260:intron | 35.0% | |
| ATTCTGTGAGTTGTCTTACT+TGG | + | chr2_4:38978907-38978926 | Msa0327270:CDS | 35.0% | |
| !!! | CAAAGAGTTTTGGAGAAAGT+TGG | + | chr2_4:38978971-38978990 | Msa0327270:CDS | 35.0% |
| ! | GAAAGTTGGTTTCCAAAAAG+AGG | + | chr2_4:38978985-38979004 | Msa0327270:CDS | 35.0% |
| ATCTCAAAAGGAAAGAAGGG+TGG | - | chr2_4:38977481-38977500 | Msa0327260:CDS | 40.0% | |
| CATTCTAACATCAGGGTTTC+AGG | - | chr2_4:38977577-38977596 | Msa0327260:intron | 40.0% | |
| ! | GGTTAAACCTTTTGGGCTTA+TGG | + | chr2_4:38977623-38977642 | Msa0327270:intron | 40.0% |
| CTTGGACTTAGTGCATTGTT+TGG | + | chr2_4:38977648-38977667 | Msa0327270:intron | 40.0% | |
| ! | GCATTGTTTGGTAATACTCG+TGG | + | chr2_4:38977660-38977679 | Msa0327270:intron | 40.0% |
| CGTGTCCAAAAGGGTAATTT+AGG | + | chr2_4:38977874-38977893 | Msa0327270:intron | 40.0% | |
| GCGGAACAGATTCATATTCA+AGG | + | chr2_4:38978523-38978542 | Msa0327270:intron | 40.0% | |
| ! | TTCTGACCTTGATGATCTCA+TGG | + | chr2_4:38978607-38978626 | Msa0327270:intron | 40.0% |
| TGCATCAATGATCGTGCAAT+TGG | + | chr2_4:38978749-38978768 | Msa0327270:CDS | 40.0% | |
| GCATCAATGATCGTGCAATT+GGG | + | chr2_4:38978750-38978769 | Msa0327270:CDS | 40.0% | |
| TTTATCACCAGGTGAACTTG+AGG | - | chr2_4:38978789-38978808 | Msa0327260:intron | 40.0% | |
| GTTCACCTGGTGATAAATCA+AGG | + | chr2_4:38978792-38978811 | Msa0327270:CDS | 40.0% | |
| TCGTTCCTTGATTTATCACC+AGG | - | chr2_4:38978800-38978819 | Msa0327260:intron | 40.0% | |
| !!! | GGCTCTAAATTTTGGGGTAA+AGG | + | chr2_4:38978845-38978864 | Msa0327270:CDS | 40.0% |
| GTGAGTTGTCTTACTTGGAA+AGG | + | chr2_4:38978912-38978931 | Msa0327270:CDS | 40.0% | |
| ! | GCTTGAAGCTTTAGTTGATG+TGG | + | chr2_4:38978934-38978953 | Msa0327270:CDS | 40.0% |
| ! | TGTTGGGTCTCAAAGAGTTT+TGG | + | chr2_4:38978961-38978980 | Msa0327270:CDS | 40.0% |
| TCCAAAAAGAGGGAGTTCTA+AGG | + | chr2_4:38978996-38979015 | Msa0327270:CDS | 40.0% | |
| ! | TCCTTAGAACTCCCTCTTTT+TGG | - | chr2_4:38979000-38979019 | Msa0327260:intron | 40.0% |
| GAGATCAGTAGAAAGAACAC+TGG | - | chr2_4:38979065-38979084 | Msa0327260:intron | 40.0% | |
| ATCTCAAAAGGAAAGAAGGG+TGG | - | chr2_4:38977481-38977500 | Msa0327260:CDS | 40.0% | |
| CATTCTAACATCAGGGTTTC+AGG | - | chr2_4:38977577-38977596 | Msa0327260:intron | 40.0% | |
| ! | GGTTAAACCTTTTGGGCTTA+TGG | + | chr2_4:38977623-38977642 | Msa0327270:intron | 40.0% |
| CTTGGACTTAGTGCATTGTT+TGG | + | chr2_4:38977648-38977667 | Msa0327270:intron | 40.0% | |
| ! | GCATTGTTTGGTAATACTCG+TGG | + | chr2_4:38977660-38977679 | Msa0327270:intron | 40.0% |
| CGTGTCCAAAAGGGTAATTT+AGG | + | chr2_4:38977874-38977893 | Msa0327270:intron | 40.0% | |
| GCGGAACAGATTCATATTCA+AGG | + | chr2_4:38978523-38978542 | Msa0327270:intron | 40.0% | |
| ! | TTCTGACCTTGATGATCTCA+TGG | + | chr2_4:38978607-38978626 | Msa0327270:intron | 40.0% |
| TGCATCAATGATCGTGCAAT+TGG | + | chr2_4:38978749-38978768 | Msa0327270:CDS | 40.0% | |
| GCATCAATGATCGTGCAATT+GGG | + | chr2_4:38978750-38978769 | Msa0327270:CDS | 40.0% | |
| TTTATCACCAGGTGAACTTG+AGG | - | chr2_4:38978789-38978808 | Msa0327260:intron | 40.0% | |
| GTTCACCTGGTGATAAATCA+AGG | + | chr2_4:38978792-38978811 | Msa0327270:CDS | 40.0% | |
| TCGTTCCTTGATTTATCACC+AGG | - | chr2_4:38978800-38978819 | Msa0327260:intron | 40.0% | |
| !!! | GGCTCTAAATTTTGGGGTAA+AGG | + | chr2_4:38978845-38978864 | Msa0327270:CDS | 40.0% |
| GTGAGTTGTCTTACTTGGAA+AGG | + | chr2_4:38978912-38978931 | Msa0327270:CDS | 40.0% | |
| ! | GCTTGAAGCTTTAGTTGATG+TGG | + | chr2_4:38978934-38978953 | Msa0327270:CDS | 40.0% |
| ! | TGTTGGGTCTCAAAGAGTTT+TGG | + | chr2_4:38978961-38978980 | Msa0327270:CDS | 40.0% |
| TCCAAAAAGAGGGAGTTCTA+AGG | + | chr2_4:38978996-38979015 | Msa0327270:CDS | 40.0% | |
| ! | TCCTTAGAACTCCCTCTTTT+TGG | - | chr2_4:38979000-38979019 | Msa0327260:intron | 40.0% |
| GAGATCAGTAGAAAGAACAC+TGG | - | chr2_4:38979065-38979084 | Msa0327260:intron | 40.0% | |
| ATAGGTGACACGTGTCCAAA+AGG | + | chr2_4:38977864-38977883 | Msa0327270:intron | 45.0% | |
| TAGGTGACACGTGTCCAAAA+GGG | + | chr2_4:38977865-38977884 | Msa0327270:intron | 45.0% | |
| ! | ACATAGTGCGCAATCCCTTT+TGG | + | chr2_4:38978021-38978040 | Msa0327270:intron | 45.0% |
| GTGCGCAATCCCTTAATATG+TGG | + | chr2_4:38978175-38978194 | Msa0327270:intron | 45.0% | |
| GGTCAGAAAGATTAAGGGGT+CGG | - | chr2_4:38978595-38978614 | Msa0327260:intron | 45.0% | |
| AAGTTGCCAAGTTCTGCTCT+TGG | + | chr2_4:38978648-38978667 | Msa0327270:CDS | 45.0% | |
| AGTTGCCAAGTTCTGCTCTT+GGG | + | chr2_4:38978649-38978668 | Msa0327270:CDS | 45.0% | |
| TCTCTATCCTCAAGTTCACC+TGG | + | chr2_4:38978779-38978798 | Msa0327270:CDS | 45.0% | |
| AGGAACGAATGTGCAGAACT+TGG | + | chr2_4:38978812-38978831 | Msa0327270:CDS | 45.0% | |
| GCAGAACTTGGCTATGTTCT+AGG | + | chr2_4:38978824-38978843 | Msa0327270:CDS | 45.0% | |
| CACTTGTTTCACAACACACG+TGG | - | chr2_4:38978876-38978895 | Msa0327260:intron | 45.0% | |
| CACGTGTGTTGTGAAACAAG+TGG | + | chr2_4:38978874-38978893 | Msa0327270:CDS | 45.0% | |
| ATAGGTGACACGTGTCCAAA+AGG | + | chr2_4:38977864-38977883 | Msa0327270:intron | 45.0% | |
| TAGGTGACACGTGTCCAAAA+GGG | + | chr2_4:38977865-38977884 | Msa0327270:intron | 45.0% | |
| ! | ACATAGTGCGCAATCCCTTT+TGG | + | chr2_4:38978021-38978040 | Msa0327270:intron | 45.0% |
| GTGCGCAATCCCTTAATATG+TGG | + | chr2_4:38978175-38978194 | Msa0327270:intron | 45.0% | |
| GGTCAGAAAGATTAAGGGGT+CGG | - | chr2_4:38978595-38978614 | Msa0327260:intron | 45.0% | |
| AAGTTGCCAAGTTCTGCTCT+TGG | + | chr2_4:38978648-38978667 | Msa0327270:CDS | 45.0% | |
| AGTTGCCAAGTTCTGCTCTT+GGG | + | chr2_4:38978649-38978668 | Msa0327270:CDS | 45.0% | |
| TCTCTATCCTCAAGTTCACC+TGG | + | chr2_4:38978779-38978798 | Msa0327270:CDS | 45.0% | |
| AGGAACGAATGTGCAGAACT+TGG | + | chr2_4:38978812-38978831 | Msa0327270:CDS | 45.0% | |
| GCAGAACTTGGCTATGTTCT+AGG | + | chr2_4:38978824-38978843 | Msa0327270:CDS | 45.0% | |
| CACTTGTTTCACAACACACG+TGG | - | chr2_4:38978876-38978895 | Msa0327260:intron | 45.0% | |
| CACGTGTGTTGTGAAACAAG+TGG | + | chr2_4:38978874-38978893 | Msa0327270:CDS | 45.0% | |
| CCAAGACCCATAAGCCCAAA+AGG | - | chr2_4:38977633-38977652 | Msa0327260:intron | 50.0% | |
| ! | CCTTTTGGGCTTATGGGTCT+TGG | + | chr2_4:38977630-38977649 | Msa0327270:intron | 50.0% |
| AAGGGGTCGGAGTGTGATTT+GGG | - | chr2_4:38978582-38978601 | Msa0327260:intron | 50.0% | |
| TAAGGGGTCGGAGTGTGATT+TGG | - | chr2_4:38978583-38978602 | Msa0327260:intron | 50.0% | |
| GAGTTCCCAAGAGCAGAACT+TGG | - | chr2_4:38978657-38978676 | Msa0327260:intron | 50.0% | |
| TTGGGAACTCTACACCAGCA+AGG | + | chr2_4:38978667-38978686 | Msa0327270:CDS | 50.0% | |
| CTCTACACCAGCAAGGATGA+TGG | + | chr2_4:38978674-38978693 | Msa0327270:CDS | 50.0% | |
| GTTGATGCCATCATCCTTGC+TGG | - | chr2_4:38978684-38978703 | Msa0327260:intron | 50.0% | |
| CCAAGACCCATAAGCCCAAA+AGG | - | chr2_4:38977633-38977652 | Msa0327260:intron | 50.0% | |
| ! | CCTTTTGGGCTTATGGGTCT+TGG | + | chr2_4:38977630-38977649 | Msa0327270:intron | 50.0% |
| AAGGGGTCGGAGTGTGATTT+GGG | - | chr2_4:38978582-38978601 | Msa0327260:intron | 50.0% | |
| TAAGGGGTCGGAGTGTGATT+TGG | - | chr2_4:38978583-38978602 | Msa0327260:intron | 50.0% | |
| GAGTTCCCAAGAGCAGAACT+TGG | - | chr2_4:38978657-38978676 | Msa0327260:intron | 50.0% | |
| TTGGGAACTCTACACCAGCA+AGG | + | chr2_4:38978667-38978686 | Msa0327270:CDS | 50.0% | |
| CTCTACACCAGCAAGGATGA+TGG | + | chr2_4:38978674-38978693 | Msa0327270:CDS | 50.0% | |
| GTTGATGCCATCATCCTTGC+TGG | - | chr2_4:38978684-38978703 | Msa0327260:intron | 50.0% | |
| ! | GCACCTCGAGAGCACAATCA+GGG | - | chr2_4:38977524-38977543 | Msa0327260:CDS | 55.0% |
| ! | AGCACCTCGAGAGCACAATC+AGG | - | chr2_4:38977525-38977544 | Msa0327260:CDS | 55.0% |
| ! | GCACCTCGAGAGCACAATCA+GGG | - | chr2_4:38977524-38977543 | Msa0327260:CDS | 55.0% |
| ! | AGCACCTCGAGAGCACAATC+AGG | - | chr2_4:38977525-38977544 | Msa0327260:CDS | 55.0% |
| ! | GAGAGCACAATCAGGGCGGT+CGG | - | chr2_4:38977517-38977536 | Msa0327260:CDS | 60.0% |
| ! | CCTCGAGAGCACAATCAGGG+CGG | - | chr2_4:38977521-38977540 | Msa0327260:CDS | 60.0% |
| ! | GAGAGCACAATCAGGGCGGT+CGG | - | chr2_4:38977517-38977536 | Msa0327260:CDS | 60.0% |
| ! | CCTCGAGAGCACAATCAGGG+CGG | - | chr2_4:38977521-38977540 | Msa0327260:CDS | 60.0% |
| CCGCCCTGATTGTGCTCTCG+AGG | + | chr2_4:38977518-38977537 | Msa0327270:intron | 65.0% | |
| CCGCCCTGATTGTGCTCTCG+AGG | + | chr2_4:38977518-38977537 | Msa0327270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38977434 | 38979093 | 38977434 | ID=Msa0327270;Name=Msa0327270 |
| chr2_4 | mRNA | 38977434 | 38979093 | 38977434 | ID=Msa0327270-mRNA-1;Parent=Msa0327270;Name=Msa0327270-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.5|1|1|2|0|154 |
| chr2_4 | exon | 38977434 | 38977439 | 38977434 | ID=Msa0327270-mRNA-1:exon:11639;Parent=Msa0327270-mRNA-1 |
| chr2_4 | exon | 38978635 | 38979093 | 38978635 | ID=Msa0327270-mRNA-1:exon:11640;Parent=Msa0327270-mRNA-1 |
| chr2_4 | CDS | 38977434 | 38977439 | 38977434 | ID=Msa0327270-mRNA-1:cds;Parent=Msa0327270-mRNA-1 |
| chr2_4 | CDS | 38978635 | 38979093 | 38978635 | ID=Msa0327270-mRNA-1:cds;Parent=Msa0327270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
