Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327630 | XP_003595830.2 | 93.925 | 428 | 25 | 1 | 27 | 454 | 1 | 427 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327630 | sp|Q9SYJ8|SOK1_ARATH | 38.177 | 406 | 158 | 15 | 31 | 425 | 7 | 330 | 4.95e-63 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0327630 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327630 | MtrunA17_Chr2g0309101 | 93.925 | 428 | 25 | 1 | 27 | 454 | 1 | 427 | 0.0 | 798 |
| Msa0327630 | MtrunA17_Chr2g0320281 | 45.055 | 91 | 49 | 1 | 35 | 125 | 31 | 120 | 4.32e-21 | 95.9 |
| Msa0327630 | MtrunA17_Chr4g0030891 | 42.857 | 91 | 51 | 1 | 35 | 125 | 33 | 122 | 1.08e-20 | 94.0 |
| Msa0327630 | MtrunA17_Chr4g0028131 | 45.556 | 90 | 48 | 1 | 36 | 125 | 31 | 119 | 3.10e-20 | 93.2 |
| Msa0327630 | MtrunA17_Chr1g0212601 | 41.121 | 107 | 59 | 4 | 24 | 129 | 3 | 106 | 1.05e-17 | 82.8 |
| Msa0327630 | MtrunA17_Chr8g0382651 | 41.000 | 100 | 57 | 2 | 27 | 125 | 22 | 120 | 2.77e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327630 | AT1G05577.1 | 38.177 | 406 | 158 | 15 | 31 | 425 | 7 | 330 | 5.03e-64 | 211 |
| Msa0327630 | AT2G28150.1 | 46.739 | 92 | 48 | 1 | 34 | 125 | 31 | 121 | 1.72e-23 | 103 |
| Msa0327630 | AT3G46110.2 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 2.43e-22 | 97.4 |
| Msa0327630 | AT3G46110.1 | 43.269 | 104 | 58 | 1 | 22 | 125 | 5 | 107 | 3.02e-22 | 97.8 |
| Msa0327630 | AT5G10150.1 | 39.823 | 113 | 66 | 2 | 27 | 139 | 36 | 146 | 2.82e-21 | 95.9 |
| Msa0327630 | AT5G10150.2 | 39.823 | 113 | 66 | 2 | 27 | 139 | 36 | 146 | 7.75e-21 | 94.4 |
| Msa0327630 | AT5G59790.1 | 41.758 | 91 | 52 | 1 | 35 | 125 | 45 | 134 | 9.56e-21 | 94.7 |
| Msa0327630 | AT5G59790.2 | 41.758 | 91 | 52 | 1 | 35 | 125 | 45 | 134 | 1.19e-20 | 94.0 |
Find 71 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGACAAAGATCTCTTT+TGG | 0.288400 | 2_4:-39525881 | Msa0327630:CDS |
| GGCATATTAGTAGGCTCCTT+AGG | 0.302792 | 2_4:+39523904 | None:intergenic |
| CATGATCAAAATGAACATTA+TGG | 0.310101 | 2_4:-39523805 | Msa0327630:CDS |
| CAAATCCACACTACCCCTTT+TGG | 0.310924 | 2_4:-39524695 | Msa0327630:intron |
| ATATGTGTGGCAGGATTTAA+TGG | 0.312486 | 2_4:-39524771 | Msa0327630:CDS |
| GGAGGATCAGCTAGGTGCTT+TGG | 0.317386 | 2_4:-39523844 | Msa0327630:CDS |
| GAGGATCAGCTAGGTGCTTT+GGG | 0.353768 | 2_4:-39523843 | Msa0327630:CDS |
| GACGTATTCATTATCAGAAA+TGG | 0.358743 | 2_4:+39524730 | None:intergenic |
| TAGGACCAAGCAAAGGATTC+AGG | 0.359159 | 2_4:+39524946 | None:intergenic |
| CAAACTTCTTATAAACCATT+TGG | 0.361784 | 2_4:-39523297 | Msa0327630:CDS |
| AGAAATCAGTCAGGATTCAT+TGG | 0.387998 | 2_4:-39524322 | Msa0327630:CDS |
| GCATATTAGTAGGCTCCTTA+GGG | 0.407205 | 2_4:+39523905 | None:intergenic |
| ACGTATTCATTATCAGAAAT+GGG | 0.408507 | 2_4:+39524731 | None:intergenic |
| CTAGGTGCTTTGGGACTGCT+TGG | 0.417878 | 2_4:-39523834 | Msa0327630:CDS |
| TCAGTTACTTACGAGCAAAT+TGG | 0.422889 | 2_4:+39523270 | None:intergenic |
| CAAAAGGTGGAGAAGTTAGA+AGG | 0.438816 | 2_4:-39525635 | Msa0327630:CDS |
| TGTGGATTTGTGATCCTTTG+AGG | 0.457496 | 2_4:+39524708 | None:intergenic |
| ACTTCTTATAAACCATTTGG+TGG | 0.460136 | 2_4:-39523294 | Msa0327630:CDS |
| ATGATTCAACAACCTCTTGT+AGG | 0.473719 | 2_4:+39524927 | None:intergenic |
| AAAGATATTAAGAGATGGCT+TGG | 0.473793 | 2_4:-39524991 | Msa0327630:intron |
| GATTCTTCTTCTGATAAAGA+TGG | 0.475364 | 2_4:+39524399 | None:intergenic |
| TGTAAAGGAATGAAAGGAAT+GGG | 0.487033 | 2_4:-39522493 | Msa0327630:CDS |
| GTTCTTCATCTTGCTCGAAA+CGG | 0.488480 | 2_4:-39525549 | Msa0327630:CDS |
| TGCTCAGAAAATTGCCCCTA+AGG | 0.491836 | 2_4:-39523920 | Msa0327630:CDS |
| CATGACCACCCATGTGACTA+AGG | 0.493290 | 2_4:+39525595 | None:intergenic |
| CATAATTTGATGAGTAAGAA+GGG | 0.494107 | 2_4:-39524153 | Msa0327630:CDS |
| TGATAAAGTACATACCAAAA+GGG | 0.495189 | 2_4:+39524681 | None:intergenic |
| GAGCAAATTGGTCCACCAAA+TGG | 0.501260 | 2_4:+39523282 | None:intergenic |
| AAAAGGGCTGAGATTTGTAA+AGG | 0.506932 | 2_4:-39523877 | Msa0327630:CDS |
| TCATAATTTGATGAGTAAGA+AGG | 0.513194 | 2_4:-39524154 | Msa0327630:CDS |
| CAAGAGTGGATATGTGTGGC+AGG | 0.519703 | 2_4:-39524780 | Msa0327630:CDS |
| AAATCAAGCATGGAAACAAA+AGG | 0.522656 | 2_4:-39525651 | Msa0327630:CDS |
| AGATGGCTTGGTGAAGTGAG+AGG | 0.523481 | 2_4:-39524979 | Msa0327630:CDS |
| ACCTACCTGAATCCTTTGCT+TGG | 0.529099 | 2_4:-39524951 | Msa0327630:CDS |
| AGAGATCTTTGTCTCTCTGC+CGG | 0.533661 | 2_4:+39525886 | None:intergenic |
| TTGTAAAGGAATGAAAGGAA+TGG | 0.534299 | 2_4:-39522494 | Msa0327630:CDS |
| TTTCAGCTCGGACAGGTCAT+CGG | 0.536641 | 2_4:-39524298 | Msa0327630:CDS |
| GAGATGAAATAATCAAGAGC+AGG | 0.544676 | 2_4:-39523344 | Msa0327630:CDS |
| AAAATGAACATTATGGAGCC+AGG | 0.547597 | 2_4:-39523798 | Msa0327630:intron |
| CTTGAAAAGATATTAAGAGA+TGG | 0.548408 | 2_4:-39524996 | Msa0327630:intron |
| ATCAAATTATGATACAAAGA+AGG | 0.549252 | 2_4:+39524165 | None:intergenic |
| AATTTACTTCCTTAGTCACA+TGG | 0.559038 | 2_4:-39525604 | Msa0327630:CDS |
| AAACACATGAAGTCTTGTAA+AGG | 0.559207 | 2_4:-39522508 | Msa0327630:CDS |
| AAGTCTTGTAAAGGAATGAA+AGG | 0.559264 | 2_4:-39522499 | Msa0327630:CDS |
| AGTGTTATCAGAAATCAGTC+AGG | 0.567696 | 2_4:-39524331 | Msa0327630:CDS |
| GATAATGAATACGTCCTCAA+AGG | 0.574396 | 2_4:-39524722 | Msa0327630:CDS |
| CGTATTCATTATCAGAAATG+GGG | 0.578739 | 2_4:+39524732 | None:intergenic |
| CCTTTGCTTGGTCCTACAAG+AGG | 0.578853 | 2_4:-39524939 | Msa0327630:intron |
| ATTTGTAAAGGAGACAAACT+AGG | 0.580114 | 2_4:-39523865 | Msa0327630:CDS |
| ACATACCAAAAGGGGTAGTG+TGG | 0.583512 | 2_4:+39524690 | None:intergenic |
| TGAAGCTGTACAAGTTGAAG+AGG | 0.593606 | 2_4:-39524445 | Msa0327630:CDS |
| GTTGATGATGCAGGCAATGT+GGG | 0.595370 | 2_4:-39522558 | Msa0327630:intron |
| AAGTTCATCAAAATCAAGCA+TGG | 0.603008 | 2_4:-39525661 | Msa0327630:CDS |
| GATAAAGTACATACCAAAAG+GGG | 0.611244 | 2_4:+39524682 | None:intergenic |
| ATTTACTTCCTTAGTCACAT+GGG | 0.617781 | 2_4:-39525603 | Msa0327630:CDS |
| TACTTCCTTAGTCACATGGG+TGG | 0.620447 | 2_4:-39525600 | Msa0327630:CDS |
| ACAAACTAGGAGGATCAGCT+AGG | 0.620815 | 2_4:-39523852 | Msa0327630:CDS |
| TTCAGCTACAACAATTGCTG+AGG | 0.631029 | 2_4:-39522467 | Msa0327630:CDS |
| TCAAGCATGGAAACAAAAGG+TGG | 0.631710 | 2_4:-39525648 | Msa0327630:CDS |
| TGAAGAACACGAATGAGATG+AGG | 0.633710 | 2_4:+39525564 | None:intergenic |
| AACTATAGGAGGTACAAGAG+TGG | 0.640091 | 2_4:-39524794 | Msa0327630:intron |
| GTATTCATTATCAGAAATGG+GGG | 0.640428 | 2_4:+39524733 | None:intergenic |
| TGAGACGATGTTGATGACGT+TGG | 0.649599 | 2_4:+39524063 | None:intergenic |
| CGAAACGGTGTTTATCTCAG+AGG | 0.652327 | 2_4:-39525534 | Msa0327630:intron |
| ACCAAGCAAAGGATTCAGGT+AGG | 0.685603 | 2_4:+39524950 | None:intergenic |
| GGTACAAGAGTGGATATGTG+TGG | 0.687025 | 2_4:-39524784 | Msa0327630:CDS |
| CATATTAGTAGGCTCCTTAG+GGG | 0.687178 | 2_4:+39523906 | None:intergenic |
| TGTAAAGGAGACAAACTAGG+AGG | 0.689066 | 2_4:-39523862 | Msa0327630:CDS |
| AGTTGATGATGCAGGCAATG+TGG | 0.692418 | 2_4:-39522559 | Msa0327630:intron |
| CCTCTTGTAGGACCAAGCAA+AGG | 0.696251 | 2_4:+39524939 | None:intergenic |
| TTGGATTGGATGTGGAACTG+TGG | 0.719863 | 2_4:-39523977 | Msa0327630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTGAATAAATAAAAAT+GGG | + | chr2_4:39523658-39523677 | None:intergenic | 10.0% |
| !! | TTAATGTGAATAAATAAAAA+TGG | + | chr2_4:39523659-39523678 | None:intergenic | 10.0% |
| !! | TAACAAATTGAATGAAAATA+TGG | + | chr2_4:39522809-39522828 | None:intergenic | 15.0% |
| !! | TAATTAAAACATTATTTGGT+TGG | - | chr2_4:39524876-39524895 | Msa0327630:intron | 15.0% |
| !!! | CCATTTTTTCAAATTAATAA+CGG | + | chr2_4:39525232-39525251 | None:intergenic | 15.0% |
| !! | CAAGGAAATAATGATTAATA+AGG | + | chr2_4:39523400-39523419 | None:intergenic | 20.0% |
| !! | AGTTAAAAGTTAAAAAAACG+AGG | + | chr2_4:39523442-39523461 | None:intergenic | 20.0% |
| !! | TTAGTTGCAAAAATTGATTA+TGG | + | chr2_4:39523477-39523496 | None:intergenic | 20.0% |
| !! | ACTAACAATTATTGAACTAT+AGG | - | chr2_4:39523492-39523511 | Msa0327630:intron | 20.0% |
| !!! | TCACATTAATATTTTGAGTA+TGG | - | chr2_4:39523670-39523689 | Msa0327630:intron | 20.0% |
| !! | TTAGCAAAAGTTACATAATA+AGG | + | chr2_4:39523728-39523747 | None:intergenic | 20.0% |
| !! | ATCAAATTATGATACAAAGA+AGG | + | chr2_4:39524138-39524157 | None:intergenic | 20.0% |
| !! | ATTCAAAACCATGTTTAAAA+GGG | + | chr2_4:39524730-39524749 | None:intergenic | 20.0% |
| !!! | CCGTTATTAATTTGAAAAAA+TGG | - | chr2_4:39525229-39525248 | Msa0327630:intron | 20.0% |
| !! | AAATATACTGAAACTACAAT+TGG | - | chr2_4:39525402-39525421 | Msa0327630:intron | 20.0% |
| !!! | TCAAAAAAAGTGTCATTGTT+TGG | - | chr2_4:39522557-39522576 | Msa0327630:intron | 25.0% |
| !!! | TCATTCAATTTGTTATGTAC+AGG | - | chr2_4:39522814-39522833 | Msa0327630:intron | 25.0% |
| ! | CTTGAAAAGATATTAAGAGA+TGG | - | chr2_4:39523304-39523323 | Msa0327630:CDS | 25.0% |
| ! | AACAATTATTGAACTATAGG+AGG | - | chr2_4:39523495-39523514 | Msa0327630:intron | 25.0% |
| ! | ACGTATTCATTATCAGAAAT+GGG | + | chr2_4:39523572-39523591 | None:intergenic | 25.0% |
| ! | TGATAAAGTACATACCAAAA+GGG | + | chr2_4:39523622-39523641 | None:intergenic | 25.0% |
| ! | ATGATAAAGTACATACCAAA+AGG | + | chr2_4:39523623-39523642 | None:intergenic | 25.0% |
| ! | TCATAATTTGATGAGTAAGA+AGG | - | chr2_4:39524146-39524165 | Msa0327630:CDS | 25.0% |
| ! | CATAATTTGATGAGTAAGAA+GGG | - | chr2_4:39524147-39524166 | Msa0327630:CDS | 25.0% |
| ! | TACTAATATGCCAGAAAAAA+GGG | - | chr2_4:39524407-39524426 | Msa0327630:CDS | 25.0% |
| ! | CATGATCAAAATGAACATTA+TGG | - | chr2_4:39524495-39524514 | Msa0327630:CDS | 25.0% |
| ! | CAACTGTATACACAATTTAA+AGG | + | chr2_4:39524564-39524583 | None:intergenic | 25.0% |
| ! | TTAAATTGTGTATACAGTTG+CGG | - | chr2_4:39524564-39524583 | Msa0327630:intron | 25.0% |
| ! | GATTATGAATATTCTAAGCA+TGG | + | chr2_4:39524703-39524722 | None:intergenic | 25.0% |
| ! | GATTCAAAACCATGTTTAAA+AGG | + | chr2_4:39524731-39524750 | None:intergenic | 25.0% |
| !!! | TTTTAAGAATGGCTTTTAAC+AGG | + | chr2_4:39524753-39524772 | None:intergenic | 25.0% |
| ! | TGTTAAAAGCCATTCTTAAA+AGG | - | chr2_4:39524752-39524771 | Msa0327630:CDS | 25.0% |
| ! | GTTAAAAGCCATTCTTAAAA+GGG | - | chr2_4:39524753-39524772 | Msa0327630:CDS | 25.0% |
| ! | CAAACTTCTTATAAACCATT+TGG | - | chr2_4:39525003-39525022 | Msa0327630:intron | 25.0% |
| ! | TTGAGTAAACTTCAATTGTT+TGG | - | chr2_4:39525062-39525081 | Msa0327630:intron | 25.0% |
| ! | GATTTCAACTATGAAATGTT+AGG | - | chr2_4:39525084-39525103 | Msa0327630:intron | 25.0% |
| ! | ATGTTGTCTATATTAGACAT+TGG | - | chr2_4:39525280-39525299 | Msa0327630:intron | 25.0% |
| ! | ATGTTGAACACTAACATTAA+CGG | - | chr2_4:39525306-39525325 | Msa0327630:intron | 25.0% |
| !! | CTAAAGTATCAAAACTACAT+AGG | - | chr2_4:39525338-39525357 | Msa0327630:intron | 25.0% |
| !!! | TATAAGTTGATATTGATTGC+TGG | - | chr2_4:39525531-39525550 | Msa0327630:intron | 25.0% |
| ! | TAATGTGTCTTTACACATAT+GGG | + | chr2_4:39525673-39525692 | None:intergenic | 25.0% |
| ! | TTAATGTGTCTTTACACATA+TGG | + | chr2_4:39525674-39525693 | None:intergenic | 25.0% |
| ACTAAGAGAAACAACTAACA+TGG | + | chr2_4:39522451-39522470 | None:intergenic | 30.0% | |
| !!! | GACACTTTTTTTGAAACACA+AGG | + | chr2_4:39522551-39522570 | None:intergenic | 30.0% |
| !! | AAAGTGTCATTGTTTGGTTT+TGG | - | chr2_4:39522563-39522582 | Msa0327630:intron | 30.0% |
| AAGTTCATCAAAATCAAGCA+TGG | - | chr2_4:39522639-39522658 | Msa0327630:intron | 30.0% | |
| AAATCAAGCATGGAAACAAA+AGG | - | chr2_4:39522649-39522668 | Msa0327630:intron | 30.0% | |
| AATTTACTTCCTTAGTCACA+TGG | - | chr2_4:39522696-39522715 | Msa0327630:intron | 30.0% | |
| ATTTACTTCCTTAGTCACAT+GGG | - | chr2_4:39522697-39522716 | Msa0327630:intron | 30.0% | |
| TCACACATAGTTCAAAATTG+CGG | - | chr2_4:39522889-39522908 | Msa0327630:intron | 30.0% | |
| !! | CCTCTAAAACCTTTATATTG+CGG | + | chr2_4:39522922-39522941 | None:intergenic | 30.0% |
| GTGTACTAAATTGTGTATCA+CGG | + | chr2_4:39523125-39523144 | None:intergenic | 30.0% | |
| AATTGCAGATCATAGACAAT+AGG | + | chr2_4:39523191-39523210 | None:intergenic | 30.0% | |
| AAAGATATTAAGAGATGGCT+TGG | - | chr2_4:39523309-39523328 | Msa0327630:CDS | 30.0% | |
| AAAAAACGAGGTTGAGAAAA+TGG | + | chr2_4:39523430-39523449 | None:intergenic | 30.0% | |
| GTATTCATTATCAGAAATGG+GGG | + | chr2_4:39523570-39523589 | None:intergenic | 30.0% | |
| CGTATTCATTATCAGAAATG+GGG | + | chr2_4:39523571-39523590 | None:intergenic | 30.0% | |
| GACGTATTCATTATCAGAAA+TGG | + | chr2_4:39523573-39523592 | None:intergenic | 30.0% | |
| GATAAAGTACATACCAAAAG+GGG | + | chr2_4:39523621-39523640 | None:intergenic | 30.0% | |
| GATTCTTCTTCTGATAAAGA+TGG | + | chr2_4:39523904-39523923 | None:intergenic | 30.0% | |
| ! | TTGAAGAAGAGAAGCTTTTA+GGG | - | chr2_4:39524052-39524071 | Msa0327630:CDS | 30.0% |
| AGTAAGAAGGGTAAAAAAGA+TGG | - | chr2_4:39524159-39524178 | Msa0327630:CDS | 30.0% | |
| ! | GCTTTTAATCTTAGTGAATG+AGG | + | chr2_4:39524271-39524290 | None:intergenic | 30.0% |
| TGACTAGTGTGTTCAAAAAT+TGG | - | chr2_4:39524304-39524323 | Msa0327630:CDS | 30.0% | |
| AGTGTGTTCAAAAATTGGAT+TGG | - | chr2_4:39524309-39524328 | Msa0327630:CDS | 30.0% | |
| ! | TTCAAAAATTGGATTGGATG+TGG | - | chr2_4:39524315-39524334 | Msa0327630:CDS | 30.0% |
| !!! | CTTTTTTCTGGCATATTAGT+AGG | + | chr2_4:39524408-39524427 | None:intergenic | 30.0% |
| CTACTAATATGCCAGAAAAA+AGG | - | chr2_4:39524406-39524425 | Msa0327630:CDS | 30.0% | |
| ATTTGTAAAGGAGACAAACT+AGG | - | chr2_4:39524435-39524454 | Msa0327630:CDS | 30.0% | |
| TTATGATACAATTTCTCACC+TGG | + | chr2_4:39524523-39524542 | None:intergenic | 30.0% | |
| AATCCAATGCTACTATGATT+GGG | - | chr2_4:39524784-39524803 | Msa0327630:CDS | 30.0% | |
| ! | TTTTACAGAAAAAGCTGTGA+TGG | - | chr2_4:39524934-39524953 | Msa0327630:intron | 30.0% |
| ACTTCTTATAAACCATTTGG+TGG | - | chr2_4:39525006-39525025 | Msa0327630:intron | 30.0% | |
| ! | GCATGAAATTTTTGTCTCAT+AGG | - | chr2_4:39525116-39525135 | Msa0327630:intron | 30.0% |
| ! | TGAAATTTTTGTCTCATAGG+TGG | - | chr2_4:39525119-39525138 | Msa0327630:intron | 30.0% |
| TTGTTGTGTCTATCAATGTT+TGG | + | chr2_4:39525193-39525212 | None:intergenic | 30.0% | |
| TTCCAACAGAAAAACCAATA+AGG | - | chr2_4:39525432-39525451 | Msa0327630:intron | 30.0% | |
| GCATCATCAACTACTATTTA+TGG | + | chr2_4:39525733-39525752 | None:intergenic | 30.0% | |
| !! | TAAATAGTAGTTGATGATGC+AGG | - | chr2_4:39525733-39525752 | Msa0327630:intron | 30.0% |
| ! | AAACACATGAAGTCTTGTAA+AGG | - | chr2_4:39525792-39525811 | Msa0327630:intron | 30.0% |
| ! | AAGTCTTGTAAAGGAATGAA+AGG | - | chr2_4:39525801-39525820 | Msa0327630:intron | 30.0% |
| TTGTAAAGGAATGAAAGGAA+TGG | - | chr2_4:39525806-39525825 | Msa0327630:intron | 30.0% | |
| TGTAAAGGAATGAAAGGAAT+GGG | - | chr2_4:39525807-39525826 | Msa0327630:intron | 30.0% | |
| ! | AGAGAGACAAAGATCTCTTT+TGG | - | chr2_4:39522419-39522438 | Msa0327630:CDS | 35.0% |
| ! | GAGAGACAAAGATCTCTTTT+GGG | - | chr2_4:39522420-39522439 | Msa0327630:CDS | 35.0% |
| TGTCATTGTTGAGTTTGTGT+TGG | - | chr2_4:39522586-39522605 | Msa0327630:intron | 35.0% | |
| !! | CCGCAATATAAAGGTTTTAG+AGG | - | chr2_4:39522919-39522938 | Msa0327630:intron | 35.0% |
| ACACAATGTTGTCAAATAGC+TGG | - | chr2_4:39523141-39523160 | Msa0327630:intron | 35.0% | |
| ATGATTCAACAACCTCTTGT+AGG | + | chr2_4:39523376-39523395 | None:intergenic | 35.0% | |
| !! | TGAGAAAATGGACTAAAGCA+AGG | + | chr2_4:39523418-39523437 | None:intergenic | 35.0% |
| ATATGTGTGGCAGGATTTAA+TGG | - | chr2_4:39523529-39523548 | Msa0327630:intron | 35.0% | |
| GATAATGAATACGTCCTCAA+AGG | - | chr2_4:39523578-39523597 | Msa0327630:intron | 35.0% | |
| GAGTTTCTGCATTAGTACAA+AGG | + | chr2_4:39523792-39523811 | None:intergenic | 35.0% | |
| AGTGTTATCAGAAATCAGTC+AGG | - | chr2_4:39523969-39523988 | Msa0327630:CDS | 35.0% | |
| AGAAATCAGTCAGGATTCAT+TGG | - | chr2_4:39523978-39523997 | Msa0327630:CDS | 35.0% | |
| ! | GTTGAAGAAGAGAAGCTTTT+AGG | - | chr2_4:39524051-39524070 | Msa0327630:CDS | 35.0% |
| !! | CTTTTAGGGAATGGAAAAGA+AGG | - | chr2_4:39524066-39524085 | Msa0327630:CDS | 35.0% |
| GTAGAAAAAGTTGAATCAGG+AGG | + | chr2_4:39524216-39524235 | None:intergenic | 35.0% | |
| GGAGTAGAAAAAGTTGAATC+AGG | + | chr2_4:39524219-39524238 | None:intergenic | 35.0% | |
| AAAAGGGCTGAGATTTGTAA+AGG | - | chr2_4:39524423-39524442 | Msa0327630:CDS | 35.0% | |
| AAAATGAACATTATGGAGCC+AGG | - | chr2_4:39524502-39524521 | Msa0327630:intron | 35.0% | |
| ! | AATCGTGACCCTTTTAAACA+TGG | - | chr2_4:39524719-39524738 | Msa0327630:CDS | 35.0% |
| !! | CACAAACACCCTTTTAAGAA+TGG | + | chr2_4:39524764-39524783 | None:intergenic | 35.0% |
| GAATCCAATGCTACTATGAT+TGG | - | chr2_4:39524783-39524802 | Msa0327630:CDS | 35.0% | |
| TAACCCAATCATAGTAGCAT+TGG | + | chr2_4:39524790-39524809 | None:intergenic | 35.0% | |
| GAGATGAAATAATCAAGAGC+AGG | - | chr2_4:39524956-39524975 | Msa0327630:CDS | 35.0% | |
| TCAGTTACTTACGAGCAAAT+TGG | + | chr2_4:39525033-39525052 | None:intergenic | 35.0% | |
| !! | GTGTTGACTAGTTTGTAAGT+CGG | - | chr2_4:39525360-39525379 | Msa0327630:intron | 35.0% |
| !! | TGTTGACTAGTTTGTAAGTC+GGG | - | chr2_4:39525361-39525380 | Msa0327630:intron | 35.0% |
| !!! | GACCTTATTGGTTTTTCTGT+TGG | + | chr2_4:39525437-39525456 | None:intergenic | 35.0% |
| TTACGATGTTTACCAACTCT+TGG | - | chr2_4:39525555-39525574 | Msa0327630:CDS | 35.0% | |
| ! | ATGTGTTTGTGCATTTTCTC+AGG | + | chr2_4:39525780-39525799 | None:intergenic | 35.0% |
| TCAAGCATGGAAACAAAAGG+TGG | - | chr2_4:39522652-39522671 | Msa0327630:intron | 40.0% | |
| CAAAAGGTGGAGAAGTTAGA+AGG | - | chr2_4:39522665-39522684 | Msa0327630:intron | 40.0% | |
| TGAAGAACACGAATGAGATG+AGG | + | chr2_4:39522739-39522758 | None:intergenic | 40.0% | |
| GTTCTTCATCTTGCTCGAAA+CGG | - | chr2_4:39522751-39522770 | Msa0327630:intron | 40.0% | |
| GATCAGCAGTACTAAGATCA+GGG | + | chr2_4:39522840-39522859 | None:intergenic | 40.0% | |
| TGATCAGCAGTACTAAGATC+AGG | + | chr2_4:39522841-39522860 | None:intergenic | 40.0% | |
| GGTACACAACCGCAATATAA+AGG | - | chr2_4:39522910-39522929 | Msa0327630:intron | 40.0% | |
| ACTATGCTGTCACAATTGCT+TGG | - | chr2_4:39522983-39523002 | Msa0327630:intron | 40.0% | |
| !! | ATTGCTTGGTTTGTCTGTTC+TGG | - | chr2_4:39522997-39523016 | Msa0327630:intron | 40.0% |
| ! | AACTATAGGAGGTACAAGAG+TGG | - | chr2_4:39523506-39523525 | Msa0327630:intron | 40.0% |
| TATCAGAAATGGGGGTTATG+AGG | + | chr2_4:39523562-39523581 | None:intergenic | 40.0% | |
| TGTGGATTTGTGATCCTTTG+AGG | + | chr2_4:39523595-39523614 | None:intergenic | 40.0% | |
| ! | TGAAGCTGTACAAGTTGAAG+AGG | - | chr2_4:39523855-39523874 | Msa0327630:CDS | 40.0% |
| !!! | GGATTCATTGGTTTTCAGCT+CGG | - | chr2_4:39523990-39524009 | Msa0327630:CDS | 40.0% |
| !! | GAAGAGAAGCTTTTAGGGAA+TGG | - | chr2_4:39524057-39524076 | Msa0327630:CDS | 40.0% |
| CATATTAGTAGGCTCCTTAG+GGG | + | chr2_4:39524397-39524416 | None:intergenic | 40.0% | |
| GCATATTAGTAGGCTCCTTA+GGG | + | chr2_4:39524398-39524417 | None:intergenic | 40.0% | |
| !!! | CAAATCTCAGCCCTTTTTTC+TGG | + | chr2_4:39524420-39524439 | None:intergenic | 40.0% |
| TGTAAAGGAGACAAACTAGG+AGG | - | chr2_4:39524438-39524457 | Msa0327630:CDS | 40.0% | |
| TTACACTGCGAACCAAAATG+TGG | - | chr2_4:39524587-39524606 | Msa0327630:intron | 40.0% | |
| ! | CAATTGCATCAGCCACATTT+TGG | + | chr2_4:39524602-39524621 | None:intergenic | 40.0% |
| CCACAATACAAACCATTTCG+AGG | + | chr2_4:39524653-39524672 | None:intergenic | 40.0% | |
| ! | CCTCGAAATGGTTTGTATTG+TGG | - | chr2_4:39524650-39524669 | Msa0327630:intron | 40.0% |
| TTGTATTGTGGTCGCAATTG+CGG | - | chr2_4:39524662-39524681 | Msa0327630:intron | 40.0% | |
| CAGCAGAATCTTGACCTTAT+TGG | + | chr2_4:39525449-39525468 | None:intergenic | 40.0% | |
| CAATAAGGTCAAGATTCTGC+TGG | - | chr2_4:39525447-39525466 | Msa0327630:intron | 40.0% | |
| TTCAGCTACAACAATTGCTG+AGG | - | chr2_4:39525833-39525852 | Msa0327630:intron | 40.0% | |
| AGAGATCTTTGTCTCTCTGC+CGG | + | chr2_4:39522417-39522436 | None:intergenic | 45.0% | |
| TACTTCCTTAGTCACATGGG+TGG | - | chr2_4:39522700-39522719 | Msa0327630:intron | 45.0% | |
| CGAAACGGTGTTTATCTCAG+AGG | - | chr2_4:39522766-39522785 | Msa0327630:intron | 45.0% | |
| ACCTACCTGAATCCTTTGCT+TGG | - | chr2_4:39523349-39523368 | Msa0327630:CDS | 45.0% | |
| ACCAAGCAAAGGATTCAGGT+AGG | + | chr2_4:39523353-39523372 | None:intergenic | 45.0% | |
| TAGGACCAAGCAAAGGATTC+AGG | + | chr2_4:39523357-39523376 | None:intergenic | 45.0% | |
| GGTACAAGAGTGGATATGTG+TGG | - | chr2_4:39523516-39523535 | Msa0327630:intron | 45.0% | |
| ! | CAAATCCACACTACCCCTTT+TGG | - | chr2_4:39523605-39523624 | Msa0327630:intron | 45.0% |
| ACATACCAAAAGGGGTAGTG+TGG | + | chr2_4:39523613-39523632 | None:intergenic | 45.0% | |
| !! | TGAGACGATGTTGATGACGT+TGG | + | chr2_4:39524240-39524259 | None:intergenic | 45.0% |
| ! | TTGGATTGGATGTGGAACTG+TGG | - | chr2_4:39524323-39524342 | Msa0327630:CDS | 45.0% |
| ! | TAGGGGCAATTTTCTGAGCA+GGG | + | chr2_4:39524380-39524399 | None:intergenic | 45.0% |
| ! | TTAGGGGCAATTTTCTGAGC+AGG | + | chr2_4:39524381-39524400 | None:intergenic | 45.0% |
| TGCTCAGAAAATTGCCCCTA+AGG | - | chr2_4:39524380-39524399 | Msa0327630:CDS | 45.0% | |
| GGCATATTAGTAGGCTCCTT+AGG | + | chr2_4:39524399-39524418 | None:intergenic | 45.0% | |
| ACAAACTAGGAGGATCAGCT+AGG | - | chr2_4:39524448-39524467 | Msa0327630:CDS | 45.0% | |
| GCAACTGTATTCTGTTGCAG+AGG | - | chr2_4:39524627-39524646 | Msa0327630:intron | 45.0% | |
| GAGCAAATTGGTCCACCAAA+TGG | + | chr2_4:39525021-39525040 | None:intergenic | 45.0% | |
| TTTACCAACTCTTGGCTGCA+TGG | - | chr2_4:39525563-39525582 | Msa0327630:CDS | 45.0% | |
| TTACCAACTCTTGGCTGCAT+GGG | - | chr2_4:39525564-39525583 | Msa0327630:CDS | 45.0% | |
| !! | AGTTGATGATGCAGGCAATG+TGG | - | chr2_4:39525741-39525760 | Msa0327630:intron | 45.0% |
| !! | GTTGATGATGCAGGCAATGT+GGG | - | chr2_4:39525742-39525761 | Msa0327630:intron | 45.0% |
| !! | ATATATATATAATTAACAAA+AGG | - | chr2_4:39522508-39522527 | Msa0327630:CDS | 5.0% |
| !! | TATATATATAATTAACAAAA+GGG | - | chr2_4:39522509-39522528 | Msa0327630:CDS | 5.0% |
| !!! | AAATAATGTTTTAATTAAAT+TGG | + | chr2_4:39524873-39524892 | None:intergenic | 5.0% |
| !! | AATTTAATTAAAACATTATT+TGG | - | chr2_4:39524872-39524891 | Msa0327630:intron | 5.0% |
| CATGACCACCCATGTGACTA+AGG | + | chr2_4:39522708-39522727 | None:intergenic | 50.0% | |
| !! | AGATGGCTTGGTGAAGTGAG+AGG | - | chr2_4:39523321-39523340 | Msa0327630:CDS | 50.0% |
| CCTCTTGTAGGACCAAGCAA+AGG | + | chr2_4:39523364-39523383 | None:intergenic | 50.0% | |
| CCTTTGCTTGGTCCTACAAG+AGG | - | chr2_4:39523361-39523380 | Msa0327630:CDS | 50.0% | |
| CAAGAGTGGATATGTGTGGC+AGG | - | chr2_4:39523520-39523539 | Msa0327630:intron | 50.0% | |
| !!! | CATTGGTTTTCAGCTCGGAC+AGG | - | chr2_4:39523995-39524014 | Msa0327630:CDS | 50.0% |
| TTTCAGCTCGGACAGGTCAT+CGG | - | chr2_4:39524002-39524021 | Msa0327630:CDS | 50.0% | |
| GAGGATCAGCTAGGTGCTTT+GGG | - | chr2_4:39524457-39524476 | Msa0327630:CDS | 50.0% | |
| GGAGGATCAGCTAGGTGCTT+TGG | - | chr2_4:39524456-39524475 | Msa0327630:CDS | 55.0% | |
| !! | CTAGGTGCTTTGGGACTGCT+TGG | - | chr2_4:39524466-39524485 | Msa0327630:CDS | 55.0% |
| CTGTTGCAGAGGCCTCGAAA+TGG | - | chr2_4:39524638-39524657 | Msa0327630:intron | 55.0% | |
| TAGCCCATGCAGCCAAGAGT+TGG | + | chr2_4:39525570-39525589 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 39522411 | 39525911 | 39522411 | ID=Msa0327630;Name=Msa0327630 |
| chr2_4 | mRNA | 39522411 | 39525911 | 39522411 | ID=Msa0327630-mRNA-1;Parent=Msa0327630;Name=Msa0327630-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|454 |
| chr2_4 | exon | 39525871 | 39525911 | 39525871 | ID=Msa0327630-mRNA-1:exon:11946;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39525535 | 39525701 | 39525535 | ID=Msa0327630-mRNA-1:exon:11945;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39524940 | 39525009 | 39524940 | ID=Msa0327630-mRNA-1:exon:11944;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39524696 | 39524808 | 39524696 | ID=Msa0327630-mRNA-1:exon:11943;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39523799 | 39524516 | 39523799 | ID=Msa0327630-mRNA-1:exon:11942;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39523282 | 39523380 | 39523282 | ID=Msa0327630-mRNA-1:exon:11941;Parent=Msa0327630-mRNA-1 |
| chr2_4 | exon | 39522411 | 39522567 | 39522411 | ID=Msa0327630-mRNA-1:exon:11940;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39525871 | 39525911 | 39525871 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39525535 | 39525701 | 39525535 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39524940 | 39525009 | 39524940 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39524696 | 39524808 | 39524696 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39523799 | 39524516 | 39523799 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39523282 | 39523380 | 39523282 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| chr2_4 | CDS | 39522411 | 39522567 | 39522411 | ID=Msa0327630-mRNA-1:cds;Parent=Msa0327630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
