AlfalfaGEDB | Msa0329240

M. sativa cultivar zhongmu-4 / Msa0329240

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329240	XP_039686568.1	96.583	1229	33	2	1	1228	1	1221	0.0	2443

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329240	sp\|Q9C9U5\|SIS8_ARATH	37.586	290	155	8	926	1212	737	1003	1.27e-47	189

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329240	MtrunA17_Chr2g0310761	96.583	1229	33	2	1	1228	1	1221	0.0	2443
Msa0329240	MtrunA17_Chr2g0310781	55.206	1239	424	26	9	1228	1	1127	0.0	1234
Msa0329240	MtrunA17_Chr8g0357611	50.688	945	365	19	325	1228	768	1652	0.0	829
Msa0329240	MtrunA17_Chr8g0357611	47.837	393	195	8	7	391	13	403	4.10e-93	330
Msa0329240	MtrunA17_Chr6g0461841	64.675	385	100	6	839	1221	891	1241	3.16e-155	498
Msa0329240	MtrunA17_Chr6g0461841	62.162	148	53	3	154	298	175	322	7.13e-44	174
Msa0329240	MtrunA17_Chr1g0196631	75.084	297	66	1	924	1220	886	1174	4.83e-153	490
Msa0329240	MtrunA17_Chr1g0196631	37.377	305	138	6	51	306	34	334	1.06e-41	167
Msa0329240	MtrunA17_Chr2g0305141	70.358	307	82	2	919	1225	1064	1361	4.45e-141	462
Msa0329240	MtrunA17_Chr2g0305141	47.701	174	80	4	144	311	147	315	8.36e-35	145

Showing 1 to 10 of 508 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0329240	AT1G79570.2	46.878	913	358	26	355	1228	424	1248	0.0	691
Msa0329240	AT1G79570.2	50.402	373	167	9	7	368	12	377	1.18e-92	325
Msa0329240	AT1G79570.1	46.878	913	358	26	355	1228	424	1248	0.0	691
Msa0329240	AT1G79570.1	50.402	373	167	9	7	368	12	377	1.18e-92	325
Msa0329240	AT1G16270.1	64.286	504	128	7	729	1228	692	1147	0.0	629
Msa0329240	AT1G16270.1	37.275	668	317	19	18	617	23	656	2.52e-92	323
Msa0329240	AT1G16270.2	64.286	504	128	7	729	1228	692	1147	0.0	629
Msa0329240	AT1G16270.2	37.275	668	317	19	18	617	23	656	2.52e-92	323
Msa0329240	AT1G16270.3	64.286	504	128	7	729	1228	692	1147	0.0	629
Msa0329240	AT1G16270.3	37.275	668	317	19	18	617	23	656	2.52e-92	323

Showing 1 to 10 of 519 entries

Previous1 2 3 4 5…52Next

Find 349 sgRNAs with CRISPR-Local

Find 547 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACGAGCCTAAAAGT+TGG	0.600577	2_4:-42388874	Msa0329240:CDS
AAACGATGAGACAAGGGATG+CGG	0.621788	2_4:-42388417	Msa0329240:CDS
AAAGGAATCTTAGGTCATCC+AGG	0.545485	2_4:-42390945	Msa0329240:CDS
AAATAACCCTTCTGAACTTA+AGG	0.336629	2_4:-42388597	Msa0329240:CDS
AACAAATCTGCCTGTTCCCT+GGG	0.440569	2_4:+42389550	None:intergenic
AACACTGATGGAGCAGTGTT+GGG	0.480300	2_4:-42385197	Msa0329240:CDS
AACAGGCAGATTTGTTGAAC+CGG	0.415946	2_4:-42389543	Msa0329240:CDS
AACAGTTCGGCTCTCAATCT+AGG	0.443807	2_4:-42390030	Msa0329240:CDS
AACCAAAGGACAAGGACACA+AGG	0.621645	2_4:-42385098	Msa0329240:CDS
AACCAAGGAATCACGAGCAA+AGG	0.580951	2_4:-42389970	Msa0329240:CDS

Showing 1 to 10 of 349 entries

Previous1 2 3 4 5…35Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTGTGTGTGTGTAAAAA+CGG	-	chr2_4:42384665-42384684	Msa0329240:three_prime_UTR	30.0%
CAAAATTCATCAAACTTGAG+GGG	+	chr2_4:42385102-42385121	None:intergenic	30.0%
CCAAAATTCATCAAACTTGA+GGG	+	chr2_4:42385103-42385122	None:intergenic	30.0%
TCCAAAATTCATCAAACTTG+AGG	+	chr2_4:42385104-42385123	None:intergenic	30.0%
CAATTCAACCACCTAAAAAA+AGG	+	chr2_4:42385180-42385199	None:intergenic	30.0%
TATATTGCACTGAAGAAGTT+AGG	+	chr2_4:42385300-42385319	None:intergenic	30.0%
TGTTCTTCTAATGGTACTTT+AGG	-	chr2_4:42385381-42385400	Msa0329240:intron	30.0%
GTTCTTCTAATGGTACTTTA+GGG	-	chr2_4:42385382-42385401	Msa0329240:intron	30.0%
TAACCAAATGAAGATCATGA+AGG	-	chr2_4:42385637-42385656	Msa0329240:intron	30.0%
TGTACTCTTCAAGAAATTGT+AGG	-	chr2_4:42385722-42385741	Msa0329240:intron	30.0%

Showing 1 to 10 of 547 entries

Previous1 2 3 4 5…55Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	42384586	42393060	42384586	ID=Msa0329240;Name=Msa0329240
chr2_4	mRNA	42384586	42393060	42384586	ID=Msa0329240-mRNA-1;Parent=Msa0329240;Name=Msa0329240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=619\|0.88\|0.8\|1\|0.77\|0.7\|10\|501\|1228
chr2_4	exon	42384586	42385280	42384586	ID=Msa0329240-mRNA-1:exon:13118;Parent=Msa0329240-mRNA-1
chr2_4	exon	42386334	42386421	42386334	ID=Msa0329240-mRNA-1:exon:13117;Parent=Msa0329240-mRNA-1
chr2_4	exon	42386745	42386867	42386745	ID=Msa0329240-mRNA-1:exon:13116;Parent=Msa0329240-mRNA-1
chr2_4	exon	42386955	42387136	42386955	ID=Msa0329240-mRNA-1:exon:13115;Parent=Msa0329240-mRNA-1
chr2_4	exon	42387431	42387584	42387431	ID=Msa0329240-mRNA-1:exon:13114;Parent=Msa0329240-mRNA-1
chr2_4	exon	42387695	42387847	42387695	ID=Msa0329240-mRNA-1:exon:13113;Parent=Msa0329240-mRNA-1
chr2_4	exon	42388364	42388444	42388364	ID=Msa0329240-mRNA-1:exon:13112;Parent=Msa0329240-mRNA-1
chr2_4	exon	42388532	42391386	42388532	ID=Msa0329240-mRNA-1:exon:13111;Parent=Msa0329240-mRNA-1
chr2_4	exon	42391448	42391569	42391448	ID=Msa0329240-mRNA-1:exon:13110;Parent=Msa0329240-mRNA-1
chr2_4	exon	42392707	42393060	42392707	ID=Msa0329240-mRNA-1:exon:13109;Parent=Msa0329240-mRNA-1
chr2_4	five_prime_UTR	42392707	42393060	42392707	ID=Msa0329240-mRNA-1:five_prime_utr;Parent=Msa0329240-mRNA-1
chr2_4	five_prime_UTR	42391448	42391569	42391448	ID=Msa0329240-mRNA-1:five_prime_utr;Parent=Msa0329240-mRNA-1
chr2_4	five_prime_UTR	42391244	42391386	42391244	ID=Msa0329240-mRNA-1:five_prime_utr;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42388532	42391243	42388532	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42388364	42388444	42388364	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42387695	42387847	42387695	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42387431	42387584	42387431	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42386955	42387136	42386955	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42386745	42386867	42386745	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42386334	42386421	42386334	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	CDS	42385087	42385280	42385087	ID=Msa0329240-mRNA-1:cds;Parent=Msa0329240-mRNA-1
chr2_4	three_prime_UTR	42384586	42385086	42384586	ID=Msa0329240-mRNA-1:three_prime_utr;Parent=Msa0329240-mRNA-1

Gene Sequence

>Msa0329240

ATGCAGAAACATCAATACAATTCTCTGGATCCTCGAAATGAGGAATACCATTCTGCACCGCAACCGGTCCGGCAAGACCATCTGGATGGCATGCATACCAATACAAGGCCTCCTCCTGCCTTTAGCATGTCAGAAAATAAACCTGTACATAATTTCTCCATACAGACGGGTGAGGAATTCGCTCTTGAGTTTATGAGAGATAGGGTGAATGTCAAGAAGCCTGCGTTTCCAAATGTCGTGGGCGAGCCTAATTATTCAACAGGGTATATGGAATTGAAAGGAATCTTAGGTCATCCAGGATCTGAAAGTGGTACCGAGATTTCTATCCTCACAAATATTGAAAAAGTTCCGAAAGAGTTTGACAGAAGGAATTCTGTTCTACATCAGGAAAGAAGTAATTATGGCTCAGCTCGATCGATTCCAAGATCATCTAATCAAGACAATAACCGAGTCTTTCAAGGAATTTCCTCCTCTGGATCTTCTGAAAACTTATCTATGAAGATGAAGATTCTATGCAGCTTTGGTGGTAGAATATTACCACGTCCGGGTGACGGAAAGCTTAGATATGTCGGGGGTGAAACATGGATTATTAGTATAAGAAAGGACATAAGTTGGCCGGAGCTTATGCAGAAAATATTATCGATCTATAATGAAACTCGTGTAATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCCCTAGTTTCGGTATCTTCCGATGAGGATCTCCGGAATATGATGGAGGAATGTCATGATCTACAAAGAAGGAGAGGATCGTTAAAGCTTAGGATGTTCTTATTCTCGATAAATGAATTGGAGGATACCCAGTTTGGTCTTGGTAGCATGGATGGTGGTGATTCTGAAATCCAGTATGTCGTTGCTATTAATGGTATGGACATGGAATCAAGAAGCAACTCTATCCTTCGTTGCGGAGGAAGTTCTAATAATATAAATGAATTGGACAGACAAAGTATTGACAGGGAGACTAAAAGAGTTGCGGTAGAATCATATGGTGTCGGTAGTTCTTCCTTAACCGGCAATGTTAACTCAGTATTGACAAATCAGTCTTCGCAACCAATTCTACCAACACCCTCAAATGCTTATGAAGCTTATCCGTTCTTTTACGAGGATCCGATCATTCAACAAGGGGGAACTGGTCAATATCCAATACACACTGGTCCTTTTCCTTCTAACAGTTCGGCTCTCAATCTAGGAGAGGTTCCTGTTTCTTTGCCTACTCATGGTGTTGTGAACCAAGGAATCACGAGCAAAGGACAATTATCCAGTGAGTTGCAAGTACAAAGAAAGGGTGATAATGTCATTCATGCAGCAAATGACCGAGTGAACGCTTTATCAACAGAAGCACCATATTCTCTTCCTTTGAATCCATTCGAGGGAAGTTTGCAAGGTAATTTATCAGAGGCATCAGTTCCAGCTGCTGTATCAGAAGCAATCCATCCTGCAGTTCCATTAGAAAACAAGATTCCAGCTGCTGTATCAGAAGTGCTGAATCCTATACAGATTCCAAGATCTGGGGAAGATGACTTCTATACTGCATCCACAGACGCATTCAGTCGTGCTCTTGTTGATGCCGAGTCCAATGTAATTGATTTCAGTTGCCTTGAACCACCTCCGCTTCCTAATAGAGTATATTATTCAGAGAGAGTTTTTCCCAGGGAACAGGCAGATTTGTTGAACCGGTCTGCAAAGTCGGATGATGCATATGGTTCTCACTTACTCATGTCAGATTTACTTTCCGATTTGAACCATATGAATTCAGTTAATGAATCCAGTGCCATGTTGCACAGCGAGAATATGTCGAATCTGAACACAGTGTCCAACACATCAGCAAAGCCCTTGCATGCAGATGGCCATAGCATCAGCAGCAAACCTTTGCCTGATGCAACAAGTCAGGTGAATTCAAAGTTATATCAGGGTGTGGATTCTGATTTGAAGCCGGTATTATCAGATAACAAAATTTCTGAAAATGAGACAAATATCTCCAAAGATAGGCATAAAATTCCTCAAGTTGATGAAACCAAGGGCAGTGAGCATCTTGCATTTCATCGTGTTCCTTCTGTTGAACATAATGAGAATCTAGCATCTAAACTTCAAGAGAAAAATTTGTCTGCGGTTCCTACAAGGGATCCCAATAATGATGCTAAAGTCCAAGCTCCGCCTTTTGATGCTAAATCTAAACCTTCTCAAGGTGACATTCTGATTGATATTGAAGACAGGTTTCCCCGTGATTTCCTTTATGATATGTTCTCGAAAGCAGTTCATTCTGAAGATTCTGCAAATATTAGTCCATTGCCAGCTGATAGAGCAGGTTTGAGCTTAAAAATGGAAAATCACGAGCCTAAAAGTTGGTCATATTTTCAGAAGTTGGCTCATGAAGGGTTTGATAATGTTTCGCTAATTGATCAGGATAATCTCGGTTATTCATCAGCTGTTAGTAAAGTAAAAGAAGGGGATGGTATGTTACAGCATTCTGCACCTCTACCAGCTGAGAGTGTTATTATGACAGGACCCAAGGAATCCCATTCCCAACTAAATTTCGTAGAGGAAAATCAGAATAGTTTACCTGTAACCACCAAAACCGAGGCTGTTGTTTTTCAACCAGAAAATAACCCTTCTGAACTTAAGGGAAATGAAAATAAGAACGTCAACGCCACAGTGGAAAACGATAGAGCTCAGGAGCCTGAATATCTTGATGGAAACGATGAGACAAGGGATGCGGTTGTAGTTCCTCAAGATATTAGTTTTGGGGAGTTTGACATTAGTACTTTGCAGATCATAATGAATGCGGATCTTGAAGAACTGAGAGAACTCGGATCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGGGGATCAGACGTTGCAATTAAAAGAATAAAGAAAAGCTGTTTCTCCGGTCGGTCTTCAGAACAAGAGAGACTGACCATAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCCTTTTATGGTGTAGTTCAAGATGGACCAGGAGGAACAATGGCCACGGTTACAGAGTTCATGGTTGATGGTTCTCTTCGGCATGTTTTGCTACGATTTTTGCATGATCTTATAATTGTTCCATCCAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAGTACTTACATGCAAAAAATATTGTTCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACATGAAGGATCCTTTACGGCCAATATGCAAGGTTGGAGATTTTGGCCTGTCAAAAATTAAGCGGAATACCCTGGTGACAGGTGGCGTGCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTGAATGGGAGCAGTAATAAGGTTTCAGAAAAGGTTGATGTATTTTCCTTTGGCATTGTACTATGGGAGATTCTTACTGGGGAGGAGCCATATGCTAATATGCACTATGGTGCAATCATAGGAGGTATTGTGAACAACACATTAAGACCTACAATCCCAAGTTATTGTGATCTAGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCTAACCCTGCAGTAAGGCCATCCTTTACAGAAATTGCGCGCCGCTTGCGCGTGATGTCTGCAGCTGCTGCTCAAACCAAAGGACAAGGACACAAGGCATCTAAATGA

Protein sequence

>Msa0329240

MQKHQYNSLDPRNEEYHSAPQPVRQDHLDGMHTNTRPPPAFSMSENKPVHNFSIQTGEEFALEFMRDRVNVKKPAFPNVVGEPNYSTGYMELKGILGHPGSESGTEISILTNIEKVPKEFDRRNSVLHQERSNYGSARSIPRSSNQDNNRVFQGISSSGSSENLSMKMKILCSFGGRILPRPGDGKLRYVGGETWIISIRKDISWPELMQKILSIYNETRVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQRRRGSLKLRMFLFSINELEDTQFGLGSMDGGDSEIQYVVAINGMDMESRSNSILRCGGSSNNINELDRQSIDRETKRVAVESYGVGSSSLTGNVNSVLTNQSSQPILPTPSNAYEAYPFFYEDPIIQQGGTGQYPIHTGPFPSNSSALNLGEVPVSLPTHGVVNQGITSKGQLSSELQVQRKGDNVIHAANDRVNALSTEAPYSLPLNPFEGSLQGNLSEASVPAAVSEAIHPAVPLENKIPAAVSEVLNPIQIPRSGEDDFYTASTDAFSRALVDAESNVIDFSCLEPPPLPNRVYYSERVFPREQADLLNRSAKSDDAYGSHLLMSDLLSDLNHMNSVNESSAMLHSENMSNLNTVSNTSAKPLHADGHSISSKPLPDATSQVNSKLYQGVDSDLKPVLSDNKISENETNISKDRHKIPQVDETKGSEHLAFHRVPSVEHNENLASKLQEKNLSAVPTRDPNNDAKVQAPPFDAKSKPSQGDILIDIEDRFPRDFLYDMFSKAVHSEDSANISPLPADRAGLSLKMENHEPKSWSYFQKLAHEGFDNVSLIDQDNLGYSSAVSKVKEGDGMLQHSAPLPAESVIMTGPKESHSQLNFVEENQNSLPVTTKTEAVVFQPENNPSELKGNENKNVNATVENDRAQEPEYLDGNDETRDAVVVPQDISFGEFDISTLQIIMNADLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFSGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRFLHDLIIVPSRYLDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCDNLLVNMKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAAQTKGQGHKASK*